Multiple sequence alignment - TraesCS6B01G138200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G138200 chr6B 100.000 4210 0 0 1 4210 135706764 135710973 0.000000e+00 7775.0
1 TraesCS6B01G138200 chr6B 96.250 160 5 1 3703 3862 135710314 135710472 1.160000e-65 261.0
2 TraesCS6B01G138200 chr6B 96.250 160 5 1 3551 3709 135710466 135710625 1.160000e-65 261.0
3 TraesCS6B01G138200 chr6D 90.533 3433 238 46 1 3405 61790400 61793773 0.000000e+00 4458.0
4 TraesCS6B01G138200 chr6D 92.143 280 18 3 3931 4209 61794225 61794501 3.950000e-105 392.0
5 TraesCS6B01G138200 chr6D 92.776 263 19 0 3430 3692 61793764 61794026 8.540000e-102 381.0
6 TraesCS6B01G138200 chr6D 89.510 143 14 1 3703 3845 61793885 61794026 3.340000e-41 180.0
7 TraesCS6B01G138200 chr6A 91.774 3015 166 43 427 3405 79086282 79089250 0.000000e+00 4119.0
8 TraesCS6B01G138200 chr6A 91.413 361 27 4 3703 4062 79089362 79089719 3.780000e-135 492.0
9 TraesCS6B01G138200 chr6A 87.050 417 36 10 23 425 79085825 79086237 4.960000e-124 455.0
10 TraesCS6B01G138200 chr6A 93.116 276 19 0 3430 3705 79089241 79089516 5.070000e-109 405.0
11 TraesCS6B01G138200 chr7B 88.136 118 11 3 3059 3175 443343625 443343510 2.040000e-28 137.0
12 TraesCS6B01G138200 chr7B 82.895 76 11 2 308 383 286833043 286832970 2.720000e-07 67.6
13 TraesCS6B01G138200 chr7A 86.614 127 14 3 3050 3175 507173692 507173816 2.040000e-28 137.0
14 TraesCS6B01G138200 chr2D 91.463 82 7 0 3866 3947 551437782 551437863 3.440000e-21 113.0
15 TraesCS6B01G138200 chr2D 95.833 48 2 0 3948 3995 551437882 551437929 1.250000e-10 78.7
16 TraesCS6B01G138200 chr1D 89.333 75 8 0 3875 3949 203755794 203755868 1.250000e-15 95.3
17 TraesCS6B01G138200 chr4A 88.312 77 8 1 3870 3945 601018677 601018601 1.610000e-14 91.6
18 TraesCS6B01G138200 chr1A 94.595 37 2 0 3430 3466 478551305 478551341 1.630000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G138200 chr6B 135706764 135710973 4209 False 2765.666667 7775 97.50000 1 4210 3 chr6B.!!$F1 4209
1 TraesCS6B01G138200 chr6D 61790400 61794501 4101 False 1352.750000 4458 91.24050 1 4209 4 chr6D.!!$F1 4208
2 TraesCS6B01G138200 chr6A 79085825 79089719 3894 False 1367.750000 4119 90.83825 23 4062 4 chr6A.!!$F1 4039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 398 0.740149 TCGAATGGGCATGACATTGC 59.260 50.0 17.42 10.06 38.57 3.56 F
1024 1087 0.036010 ACAAGGAGAATGCCTGTCCG 60.036 55.0 0.00 0.00 38.58 4.79 F
1594 1664 0.179111 CAACCGATCGAAGCTGCCTA 60.179 55.0 18.66 0.00 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1438 1508 0.183971 TCATCCTCCTCCTCCTCGTC 59.816 60.0 0.00 0.0 0.00 4.20 R
2309 2393 0.250640 GATTGCATCGGAGATGGCCT 60.251 55.0 3.32 0.0 45.12 5.19 R
3268 3361 0.105593 ACGTACCGATCGAGAGGCTA 59.894 55.0 18.66 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.367646 TGGATCCAGTCTTCTCTACGT 57.632 47.619 11.44 0.00 0.00 3.57
24 25 1.540267 TCCAGTCTTCTCTACGTGTGC 59.460 52.381 0.00 0.00 0.00 4.57
30 31 4.459685 AGTCTTCTCTACGTGTGCTTACAT 59.540 41.667 0.00 0.00 0.00 2.29
43 44 5.182001 GTGTGCTTACATGTTTGATCCTTCT 59.818 40.000 2.30 0.00 0.00 2.85
51 52 7.016153 ACATGTTTGATCCTTCTAACCTACA 57.984 36.000 0.00 0.00 36.95 2.74
65 66 2.872732 ACCTACACTTCTCTTCACCGA 58.127 47.619 0.00 0.00 0.00 4.69
69 70 1.887198 ACACTTCTCTTCACCGACGAT 59.113 47.619 0.00 0.00 0.00 3.73
70 71 2.296471 ACACTTCTCTTCACCGACGATT 59.704 45.455 0.00 0.00 0.00 3.34
74 75 4.022589 ACTTCTCTTCACCGACGATTGTTA 60.023 41.667 0.00 0.00 0.00 2.41
87 88 8.723311 ACCGACGATTGTTATTCTTTTATTTCA 58.277 29.630 0.00 0.00 0.00 2.69
159 165 6.942576 ACAATAAAATTCTAGTGTGCTGGTCT 59.057 34.615 0.00 0.00 29.42 3.85
168 174 1.065854 GTGTGCTGGTCTTATGGCTCT 60.066 52.381 0.00 0.00 0.00 4.09
170 176 1.208052 GTGCTGGTCTTATGGCTCTGA 59.792 52.381 0.00 0.00 0.00 3.27
231 244 7.175104 AGGTAGTTCATGAACATGGTTGTATT 58.825 34.615 33.92 15.84 43.47 1.89
251 264 9.968870 TTGTATTTTTATGGTGTTCTTTGTACC 57.031 29.630 0.00 0.00 35.05 3.34
284 297 7.931948 ACGGATTATGAATAGATCGGAAGTTTT 59.068 33.333 0.00 0.00 0.00 2.43
285 298 8.223769 CGGATTATGAATAGATCGGAAGTTTTG 58.776 37.037 0.00 0.00 0.00 2.44
296 309 1.646189 GAAGTTTTGCCCGCAACAAA 58.354 45.000 0.61 0.00 35.46 2.83
298 311 2.323968 AGTTTTGCCCGCAACAAAAT 57.676 40.000 0.61 0.00 45.70 1.82
384 398 0.740149 TCGAATGGGCATGACATTGC 59.260 50.000 17.42 10.06 38.57 3.56
385 399 0.742505 CGAATGGGCATGACATTGCT 59.257 50.000 17.42 0.00 42.38 3.91
421 435 8.492748 TCCTATAATTTTACAATCGTGCGAATC 58.507 33.333 0.00 0.00 0.00 2.52
435 492 4.544215 CGTGCGAATCAAAAATGCAATACG 60.544 41.667 0.00 0.00 37.30 3.06
497 557 2.254546 TGACCAAAGACAAGACGCAT 57.745 45.000 0.00 0.00 0.00 4.73
518 578 5.572475 GCATATATCTGCCCCTTTTAGCTCT 60.572 44.000 1.69 0.00 36.10 4.09
529 589 6.758416 GCCCCTTTTAGCTCTTTAATCAAATG 59.242 38.462 0.00 0.00 0.00 2.32
532 592 7.322664 CCTTTTAGCTCTTTAATCAAATGGCA 58.677 34.615 0.00 0.00 0.00 4.92
533 593 7.983484 CCTTTTAGCTCTTTAATCAAATGGCAT 59.017 33.333 0.00 0.00 0.00 4.40
606 666 1.557099 ACGGAGTGGCAGTTCAGATA 58.443 50.000 0.73 0.00 42.51 1.98
634 694 0.996762 AAGGGGGTCAGTGTCCCAAA 60.997 55.000 24.44 0.00 46.26 3.28
652 712 4.202070 CCCAAACCAAAAGAAAACTAGCGA 60.202 41.667 0.00 0.00 0.00 4.93
653 713 5.508994 CCCAAACCAAAAGAAAACTAGCGAT 60.509 40.000 0.00 0.00 0.00 4.58
682 742 2.775911 TTTGGAGTCAGAGCCAGATG 57.224 50.000 0.00 0.00 35.23 2.90
780 840 3.708403 ATGACAAAGATCTCACTGGCA 57.292 42.857 9.67 9.67 0.00 4.92
845 906 5.403466 GCTCATGAACTTAACCAAAAGCTTG 59.597 40.000 0.00 0.00 0.00 4.01
1024 1087 0.036010 ACAAGGAGAATGCCTGTCCG 60.036 55.000 0.00 0.00 38.58 4.79
1031 1094 0.819666 GAATGCCTGTCCGATTCCCC 60.820 60.000 0.00 0.00 0.00 4.81
1033 1096 4.547367 GCCTGTCCGATTCCCCCG 62.547 72.222 0.00 0.00 0.00 5.73
1036 1099 1.332144 CCTGTCCGATTCCCCCGTAA 61.332 60.000 0.00 0.00 0.00 3.18
1104 1167 5.730550 CACACCAGTGGTACAGTACATATT 58.269 41.667 16.22 0.00 41.96 1.28
1106 1169 7.497595 CACACCAGTGGTACAGTACATATTAT 58.502 38.462 16.22 0.00 41.96 1.28
1174 1237 4.104831 TCTTCTTCCTTCCCCTTTCCTAG 58.895 47.826 0.00 0.00 0.00 3.02
1181 1244 0.417841 TCCCCTTTCCTAGTCCTGCT 59.582 55.000 0.00 0.00 0.00 4.24
1183 1246 2.045326 TCCCCTTTCCTAGTCCTGCTTA 59.955 50.000 0.00 0.00 0.00 3.09
1236 1306 4.280436 TCGAGAGAGAGAAAGAGTGAGT 57.720 45.455 0.00 0.00 34.84 3.41
1243 1313 4.700213 AGAGAGAAAGAGTGAGTGAGCTAC 59.300 45.833 0.00 0.00 0.00 3.58
1245 1315 3.501349 AGAAAGAGTGAGTGAGCTACCA 58.499 45.455 0.00 0.00 0.00 3.25
1253 1323 6.488683 AGAGTGAGTGAGCTACCAAGTATATC 59.511 42.308 0.00 0.00 0.00 1.63
1255 1325 6.264292 AGTGAGTGAGCTACCAAGTATATCTG 59.736 42.308 0.00 0.00 0.00 2.90
1256 1326 5.010112 TGAGTGAGCTACCAAGTATATCTGC 59.990 44.000 0.00 0.00 0.00 4.26
1258 1328 6.307776 AGTGAGCTACCAAGTATATCTGCTA 58.692 40.000 0.00 0.00 0.00 3.49
1259 1329 6.951198 AGTGAGCTACCAAGTATATCTGCTAT 59.049 38.462 0.00 0.00 0.00 2.97
1260 1330 8.110271 AGTGAGCTACCAAGTATATCTGCTATA 58.890 37.037 0.00 0.00 0.00 1.31
1302 1372 3.558608 AGGGAGGAGGAGAGGATTATG 57.441 52.381 0.00 0.00 0.00 1.90
1303 1373 3.075181 AGGGAGGAGGAGAGGATTATGA 58.925 50.000 0.00 0.00 0.00 2.15
1327 1397 1.053835 TGTGGAGGACAAGCAGGTGA 61.054 55.000 0.00 0.00 0.00 4.02
1333 1403 1.209019 AGGACAAGCAGGTGATAGCTG 59.791 52.381 0.00 3.80 45.86 4.24
1340 1410 3.241156 AGCAGGTGATAGCTGAGATCAT 58.759 45.455 11.78 0.00 45.98 2.45
1362 1432 4.554683 TCATGGATGACAGGAAGAGATCT 58.445 43.478 0.00 0.00 36.87 2.75
1363 1433 4.344390 TCATGGATGACAGGAAGAGATCTG 59.656 45.833 0.00 0.00 36.87 2.90
1367 1437 4.161189 GGATGACAGGAAGAGATCTGTGAA 59.839 45.833 0.00 0.00 43.41 3.18
1368 1438 4.797800 TGACAGGAAGAGATCTGTGAAG 57.202 45.455 0.00 0.00 43.41 3.02
1370 1440 3.766591 GACAGGAAGAGATCTGTGAAGGA 59.233 47.826 0.00 0.00 43.41 3.36
1372 1442 2.765699 AGGAAGAGATCTGTGAAGGAGC 59.234 50.000 0.00 0.00 0.00 4.70
1394 1464 2.897436 CACGCTGGATCTCAATGAAGA 58.103 47.619 0.00 0.00 0.00 2.87
1395 1465 3.264947 CACGCTGGATCTCAATGAAGAA 58.735 45.455 0.00 0.00 0.00 2.52
1413 1483 4.433186 AGAAATCGATATGGAGAGCGAG 57.567 45.455 0.00 0.00 36.12 5.03
1416 1486 2.271944 TCGATATGGAGAGCGAGGAA 57.728 50.000 0.00 0.00 0.00 3.36
1429 1499 1.595993 CGAGGAAGGAGAAGTCGGCA 61.596 60.000 0.00 0.00 0.00 5.69
1443 1513 3.550656 GGCAACGACAAGGACGAG 58.449 61.111 0.00 0.00 34.70 4.18
1446 1516 1.009389 GCAACGACAAGGACGAGGAG 61.009 60.000 0.00 0.00 34.70 3.69
1455 1525 0.996762 AGGACGAGGAGGAGGAGGAT 60.997 60.000 0.00 0.00 0.00 3.24
1476 1546 2.577593 GGAGGTAGCACCACCGAC 59.422 66.667 3.28 2.30 39.19 4.79
1537 1607 0.322456 CCATGCTTCGGAGACCCAAA 60.322 55.000 0.00 0.00 34.32 3.28
1594 1664 0.179111 CAACCGATCGAAGCTGCCTA 60.179 55.000 18.66 0.00 0.00 3.93
1638 1708 1.889105 CATGGCCTTCATACGCGCT 60.889 57.895 5.73 0.00 34.12 5.92
1656 1726 1.821061 CTGTCGAGAGGCTTGGTGGT 61.821 60.000 0.62 0.00 36.07 4.16
1675 1745 5.163632 GGTGGTCAAGAGAGTAAGTACTAGC 60.164 48.000 0.00 0.00 36.50 3.42
1676 1746 5.648960 GTGGTCAAGAGAGTAAGTACTAGCT 59.351 44.000 0.00 0.00 36.50 3.32
1677 1747 6.822676 GTGGTCAAGAGAGTAAGTACTAGCTA 59.177 42.308 0.00 0.00 36.50 3.32
1678 1748 7.011669 GTGGTCAAGAGAGTAAGTACTAGCTAG 59.988 44.444 19.44 19.44 36.50 3.42
1688 1758 9.165035 GAGTAAGTACTAGCTAGAACTTTCTCA 57.835 37.037 27.45 0.55 41.84 3.27
1689 1759 9.689501 AGTAAGTACTAGCTAGAACTTTCTCAT 57.310 33.333 27.45 3.13 35.30 2.90
1720 1790 7.989741 ACTTGATTTCTTGAGATAATCATCGGT 59.010 33.333 13.93 11.66 37.91 4.69
1721 1791 8.737168 TTGATTTCTTGAGATAATCATCGGTT 57.263 30.769 13.93 0.00 37.91 4.44
1722 1792 8.146479 TGATTTCTTGAGATAATCATCGGTTG 57.854 34.615 11.26 0.00 37.89 3.77
1723 1793 7.770433 TGATTTCTTGAGATAATCATCGGTTGT 59.230 33.333 11.26 0.00 37.89 3.32
1746 1816 6.256539 TGTTTTGCTCGTGAGATTCTATGATC 59.743 38.462 0.00 0.00 40.84 2.92
1761 1831 9.808808 GATTCTATGATCTCATGATTTGTTTCG 57.191 33.333 0.00 0.00 37.15 3.46
1762 1832 8.722480 TTCTATGATCTCATGATTTGTTTCGT 57.278 30.769 0.00 0.00 37.15 3.85
1763 1833 8.134905 TCTATGATCTCATGATTTGTTTCGTG 57.865 34.615 0.00 0.00 37.15 4.35
1764 1834 4.973396 TGATCTCATGATTTGTTTCGTGC 58.027 39.130 0.00 0.00 33.50 5.34
1767 1837 3.058293 TCTCATGATTTGTTTCGTGCACC 60.058 43.478 12.15 0.00 33.50 5.01
1783 1853 4.963953 CGTGCACCGAATCTGATTAATTTC 59.036 41.667 12.15 0.00 39.56 2.17
1817 1889 7.061210 CGATTTCTTGTTCATATAGGAGCTACG 59.939 40.741 2.93 0.00 0.00 3.51
1844 1916 2.097142 GCTGGTGCTTCAGATGATGAAC 59.903 50.000 10.32 0.00 43.09 3.18
1905 1978 3.772932 CAGGTAAATCATGCGTGCAAAT 58.227 40.909 0.00 0.00 0.00 2.32
1907 1980 5.339177 CAGGTAAATCATGCGTGCAAATTA 58.661 37.500 0.00 0.00 0.00 1.40
1923 1996 7.428183 CGTGCAAATTACAATTAGTTCGCTTAT 59.572 33.333 0.00 0.00 0.00 1.73
1924 1997 9.710979 GTGCAAATTACAATTAGTTCGCTTATA 57.289 29.630 0.00 0.00 0.00 0.98
1925 1998 9.710979 TGCAAATTACAATTAGTTCGCTTATAC 57.289 29.630 0.00 0.00 0.00 1.47
1926 1999 9.931210 GCAAATTACAATTAGTTCGCTTATACT 57.069 29.630 0.00 0.00 0.00 2.12
1931 2004 9.865321 TTACAATTAGTTCGCTTATACTTCACT 57.135 29.630 0.00 0.00 0.00 3.41
1932 2005 8.773404 ACAATTAGTTCGCTTATACTTCACTT 57.227 30.769 0.00 0.00 0.00 3.16
1933 2006 9.865321 ACAATTAGTTCGCTTATACTTCACTTA 57.135 29.630 0.00 0.00 0.00 2.24
1969 2042 7.813627 GGACTCTCGGTTTATGATCTATTTACC 59.186 40.741 0.00 0.00 0.00 2.85
2004 2077 1.634702 GCAAGAAGCTAGACCACGAG 58.365 55.000 0.00 0.00 41.15 4.18
2025 2098 1.612146 TCAACGGATCAGGGGAGCA 60.612 57.895 0.00 0.00 0.00 4.26
2044 2117 3.522750 AGCAATCTCCTCAGGTTCTCATT 59.477 43.478 0.00 0.00 0.00 2.57
2049 2122 7.278135 CAATCTCCTCAGGTTCTCATTAATCA 58.722 38.462 0.00 0.00 0.00 2.57
2050 2123 7.630005 ATCTCCTCAGGTTCTCATTAATCAT 57.370 36.000 0.00 0.00 0.00 2.45
2051 2124 7.060383 TCTCCTCAGGTTCTCATTAATCATC 57.940 40.000 0.00 0.00 0.00 2.92
2052 2125 6.042552 TCTCCTCAGGTTCTCATTAATCATCC 59.957 42.308 0.00 0.00 0.00 3.51
2053 2126 4.993584 CCTCAGGTTCTCATTAATCATCCG 59.006 45.833 0.00 0.00 0.00 4.18
2056 2129 6.649155 TCAGGTTCTCATTAATCATCCGAAA 58.351 36.000 0.00 0.00 0.00 3.46
2057 2130 7.109501 TCAGGTTCTCATTAATCATCCGAAAA 58.890 34.615 0.00 0.00 0.00 2.29
2058 2131 7.609918 TCAGGTTCTCATTAATCATCCGAAAAA 59.390 33.333 0.00 0.00 0.00 1.94
2060 2133 7.611855 AGGTTCTCATTAATCATCCGAAAAACT 59.388 33.333 0.00 0.00 0.00 2.66
2061 2134 7.910683 GGTTCTCATTAATCATCCGAAAAACTC 59.089 37.037 0.00 0.00 0.00 3.01
2062 2135 7.553881 TCTCATTAATCATCCGAAAAACTCC 57.446 36.000 0.00 0.00 0.00 3.85
2063 2136 7.109501 TCTCATTAATCATCCGAAAAACTCCA 58.890 34.615 0.00 0.00 0.00 3.86
2064 2137 7.065803 TCTCATTAATCATCCGAAAAACTCCAC 59.934 37.037 0.00 0.00 0.00 4.02
2068 2141 3.664107 TCATCCGAAAAACTCCACTCTG 58.336 45.455 0.00 0.00 0.00 3.35
2098 2171 5.413833 CCTAAAACACTTGTGCTGATGAGAT 59.586 40.000 0.10 0.00 0.00 2.75
2100 2173 3.690475 ACACTTGTGCTGATGAGATGA 57.310 42.857 0.10 0.00 0.00 2.92
2102 2175 4.586884 ACACTTGTGCTGATGAGATGATT 58.413 39.130 0.10 0.00 0.00 2.57
2104 2177 5.123502 ACACTTGTGCTGATGAGATGATTTC 59.876 40.000 0.10 0.00 0.00 2.17
2105 2178 5.123344 CACTTGTGCTGATGAGATGATTTCA 59.877 40.000 0.00 0.00 0.00 2.69
2106 2179 5.708697 ACTTGTGCTGATGAGATGATTTCAA 59.291 36.000 0.00 0.00 0.00 2.69
2126 2207 0.894835 TCTTCTACATGTGGCGAGCA 59.105 50.000 9.11 0.00 0.00 4.26
2309 2393 2.582052 GGATTCTCCAACACCAACACA 58.418 47.619 0.00 0.00 36.28 3.72
2342 2426 2.867624 TGCAATCTGGCTTCAAGAACT 58.132 42.857 0.00 0.00 34.04 3.01
2375 2460 8.746530 TCAGGTAAATTCTATCACTAGACGTTT 58.253 33.333 0.00 0.00 33.66 3.60
2385 2470 5.972107 TCACTAGACGTTTAAACCTAGCT 57.028 39.130 21.85 13.29 33.70 3.32
2393 2478 5.484715 ACGTTTAAACCTAGCTATTCTGCA 58.515 37.500 12.66 0.00 34.99 4.41
2405 2490 2.483583 ATTCTGCAGAGACGATCGAC 57.516 50.000 24.34 16.66 0.00 4.20
2465 2550 2.432628 GAGTGGGCGTTCGACCAG 60.433 66.667 20.54 0.00 45.14 4.00
2499 2584 1.396653 CAGGAATGATGTGAAGGCCC 58.603 55.000 0.00 0.00 0.00 5.80
2600 2685 2.286301 GCAAATGCGAGATGAGAGCTTC 60.286 50.000 0.00 0.00 0.00 3.86
2781 2872 0.250081 CGAAGCCCTAGATTCCCAGC 60.250 60.000 0.00 0.00 34.85 4.85
2783 2874 1.212935 GAAGCCCTAGATTCCCAGCAA 59.787 52.381 0.00 0.00 32.05 3.91
2832 2923 4.014406 TCTGATTACACTAGCCGACAAGA 58.986 43.478 0.00 0.00 0.00 3.02
2890 2981 3.050275 GTCTCCAGCCACGGCAAC 61.050 66.667 11.35 0.00 44.88 4.17
2937 3028 4.244862 CAAGAAGAGGAAGAAGAGCACTC 58.755 47.826 0.00 0.00 0.00 3.51
2952 3043 1.039785 CACTCCTGCATCGAGGGAGA 61.040 60.000 20.64 5.45 46.82 3.71
2972 3063 2.226962 AAGAGCTGGAACATGCCAAT 57.773 45.000 0.00 0.00 38.20 3.16
2997 3088 1.227409 TCGATCTCGCTCTCGCTCT 60.227 57.895 0.00 0.00 39.60 4.09
3103 3194 2.363359 TGGATCTGACCATGTCGATCAG 59.637 50.000 20.08 6.63 40.56 2.90
3138 3230 7.873505 AGTGAGATCTTTAAGTACTTTGTGTCC 59.126 37.037 14.49 0.43 0.00 4.02
3191 3283 6.403527 CCATGCGATCAGTCAAGATTGTTAAA 60.404 38.462 0.00 0.00 32.91 1.52
3202 3294 9.476202 AGTCAAGATTGTTAAATTAACCTTTGC 57.524 29.630 12.72 8.30 37.88 3.68
3228 3321 8.503573 CCCTCTACCAGTACATATGGAGATATA 58.496 40.741 7.80 0.00 40.51 0.86
3266 3359 9.174166 GTTGGTAAATTTGTCTATGGAGTATGT 57.826 33.333 0.00 0.00 0.00 2.29
3376 3470 7.831193 AGAGACAAGTATCCATTATTGCAGTTT 59.169 33.333 0.00 0.00 0.00 2.66
3405 3499 3.445096 CAGTTCTTTTGGGGCTTATGAGG 59.555 47.826 0.00 0.00 0.00 3.86
3406 3500 2.760650 GTTCTTTTGGGGCTTATGAGGG 59.239 50.000 0.00 0.00 0.00 4.30
3407 3501 2.000048 TCTTTTGGGGCTTATGAGGGT 59.000 47.619 0.00 0.00 0.00 4.34
3408 3502 3.194620 TCTTTTGGGGCTTATGAGGGTA 58.805 45.455 0.00 0.00 0.00 3.69
3409 3503 3.594232 TCTTTTGGGGCTTATGAGGGTAA 59.406 43.478 0.00 0.00 0.00 2.85
3410 3504 4.044825 TCTTTTGGGGCTTATGAGGGTAAA 59.955 41.667 0.00 0.00 0.00 2.01
3411 3505 3.375647 TTGGGGCTTATGAGGGTAAAC 57.624 47.619 0.00 0.00 0.00 2.01
3412 3506 2.280103 TGGGGCTTATGAGGGTAAACA 58.720 47.619 0.00 0.00 0.00 2.83
3413 3507 2.856231 TGGGGCTTATGAGGGTAAACAT 59.144 45.455 0.00 0.00 0.00 2.71
3414 3508 3.270960 TGGGGCTTATGAGGGTAAACATT 59.729 43.478 0.00 0.00 0.00 2.71
3415 3509 4.264623 TGGGGCTTATGAGGGTAAACATTT 60.265 41.667 0.00 0.00 0.00 2.32
3416 3510 4.714802 GGGGCTTATGAGGGTAAACATTTT 59.285 41.667 0.00 0.00 0.00 1.82
3417 3511 5.395214 GGGGCTTATGAGGGTAAACATTTTG 60.395 44.000 0.00 0.00 0.00 2.44
3418 3512 5.395214 GGGCTTATGAGGGTAAACATTTTGG 60.395 44.000 0.00 0.00 0.00 3.28
3419 3513 5.420739 GGCTTATGAGGGTAAACATTTTGGA 59.579 40.000 0.00 0.00 0.00 3.53
3420 3514 6.405842 GGCTTATGAGGGTAAACATTTTGGAG 60.406 42.308 0.00 0.00 0.00 3.86
3421 3515 6.405842 GCTTATGAGGGTAAACATTTTGGAGG 60.406 42.308 0.00 0.00 0.00 4.30
3422 3516 3.773560 TGAGGGTAAACATTTTGGAGGG 58.226 45.455 0.00 0.00 0.00 4.30
3423 3517 3.096852 GAGGGTAAACATTTTGGAGGGG 58.903 50.000 0.00 0.00 0.00 4.79
3424 3518 2.453212 AGGGTAAACATTTTGGAGGGGT 59.547 45.455 0.00 0.00 0.00 4.95
3425 3519 2.565391 GGGTAAACATTTTGGAGGGGTG 59.435 50.000 0.00 0.00 0.00 4.61
3426 3520 3.236047 GGTAAACATTTTGGAGGGGTGT 58.764 45.455 0.00 0.00 0.00 4.16
3427 3521 3.257375 GGTAAACATTTTGGAGGGGTGTC 59.743 47.826 0.00 0.00 0.00 3.67
3428 3522 2.009681 AACATTTTGGAGGGGTGTCC 57.990 50.000 0.00 0.00 37.10 4.02
3429 3523 0.251165 ACATTTTGGAGGGGTGTCCG 60.251 55.000 0.00 0.00 39.81 4.79
3430 3524 0.965363 CATTTTGGAGGGGTGTCCGG 60.965 60.000 0.00 0.00 39.81 5.14
3431 3525 2.781431 ATTTTGGAGGGGTGTCCGGC 62.781 60.000 0.00 0.00 39.81 6.13
3432 3526 4.974438 TTGGAGGGGTGTCCGGCT 62.974 66.667 0.00 0.00 39.81 5.52
3433 3527 4.974438 TGGAGGGGTGTCCGGCTT 62.974 66.667 0.00 0.00 39.81 4.35
3434 3528 2.686106 GGAGGGGTGTCCGGCTTA 60.686 66.667 0.00 0.00 41.52 3.09
3435 3529 2.070650 GGAGGGGTGTCCGGCTTAT 61.071 63.158 0.00 0.00 41.52 1.73
3436 3530 1.146263 GAGGGGTGTCCGGCTTATG 59.854 63.158 0.00 0.00 41.52 1.90
3437 3531 1.306654 AGGGGTGTCCGGCTTATGA 60.307 57.895 0.00 0.00 41.52 2.15
3438 3532 1.146263 GGGGTGTCCGGCTTATGAG 59.854 63.158 0.00 0.00 0.00 2.90
3466 3560 8.548721 GTCTGTCAAAATAAGTTATCCATACCG 58.451 37.037 0.00 0.00 0.00 4.02
3560 3654 0.810031 CGCCCTTAAGCTACACGCAT 60.810 55.000 0.00 0.00 42.61 4.73
3596 3690 9.581289 TTGTGAAATCTTAATCTTGAGGGTTTA 57.419 29.630 0.00 0.00 0.00 2.01
3637 3731 5.063438 ACACATGTTAGCACTAAATGTAGCG 59.937 40.000 0.00 7.90 31.78 4.26
3655 3749 4.868314 AGCGGTAATCTTATGGTAGACC 57.132 45.455 0.00 0.00 0.00 3.85
3656 3750 4.481072 AGCGGTAATCTTATGGTAGACCT 58.519 43.478 0.00 0.00 36.82 3.85
3672 3766 6.214615 TGGTAGACCTTCATCCAAATTAGTCA 59.785 38.462 0.00 0.00 36.82 3.41
3673 3767 7.110155 GGTAGACCTTCATCCAAATTAGTCAA 58.890 38.462 0.00 0.00 0.00 3.18
3705 3799 5.437289 TTGTTTACATCTTCAAGTGGCTG 57.563 39.130 0.00 0.00 0.00 4.85
3706 3800 3.253188 TGTTTACATCTTCAAGTGGCTGC 59.747 43.478 0.00 0.00 0.00 5.25
3707 3801 2.857186 TACATCTTCAAGTGGCTGCA 57.143 45.000 0.50 0.00 0.00 4.41
3708 3802 1.242076 ACATCTTCAAGTGGCTGCAC 58.758 50.000 0.50 0.00 0.00 4.57
3709 3803 0.167470 CATCTTCAAGTGGCTGCACG 59.833 55.000 0.50 0.00 0.00 5.34
3710 3804 1.580845 ATCTTCAAGTGGCTGCACGC 61.581 55.000 0.50 0.00 38.13 5.34
3711 3805 2.515757 TTCAAGTGGCTGCACGCA 60.516 55.556 0.50 0.00 41.67 5.24
3712 3806 1.859427 CTTCAAGTGGCTGCACGCAT 61.859 55.000 0.50 0.00 41.67 4.73
3713 3807 1.855213 TTCAAGTGGCTGCACGCATC 61.855 55.000 0.50 0.00 41.67 3.91
3714 3808 3.058160 AAGTGGCTGCACGCATCC 61.058 61.111 4.94 4.94 41.67 3.51
3715 3809 3.848301 AAGTGGCTGCACGCATCCA 62.848 57.895 10.44 10.44 39.56 3.41
3716 3810 3.136123 GTGGCTGCACGCATCCAT 61.136 61.111 16.89 0.00 43.02 3.41
3717 3811 2.361483 TGGCTGCACGCATCCATT 60.361 55.556 10.44 0.00 37.31 3.16
3718 3812 1.978080 TGGCTGCACGCATCCATTT 60.978 52.632 10.44 0.00 37.31 2.32
3719 3813 1.216178 GGCTGCACGCATCCATTTT 59.784 52.632 7.02 0.00 41.67 1.82
3720 3814 0.390209 GGCTGCACGCATCCATTTTT 60.390 50.000 7.02 0.00 41.67 1.94
3721 3815 1.135141 GGCTGCACGCATCCATTTTTA 60.135 47.619 7.02 0.00 41.67 1.52
3722 3816 2.481795 GGCTGCACGCATCCATTTTTAT 60.482 45.455 7.02 0.00 41.67 1.40
3723 3817 3.189285 GCTGCACGCATCCATTTTTATT 58.811 40.909 0.00 0.00 38.92 1.40
3724 3818 3.000523 GCTGCACGCATCCATTTTTATTG 59.999 43.478 0.00 0.00 38.92 1.90
3725 3819 4.175516 CTGCACGCATCCATTTTTATTGT 58.824 39.130 0.00 0.00 0.00 2.71
3726 3820 3.925299 TGCACGCATCCATTTTTATTGTG 59.075 39.130 0.00 0.00 0.00 3.33
3727 3821 4.172505 GCACGCATCCATTTTTATTGTGA 58.827 39.130 0.00 0.00 0.00 3.58
3728 3822 4.624882 GCACGCATCCATTTTTATTGTGAA 59.375 37.500 0.00 0.00 0.00 3.18
3729 3823 5.119898 GCACGCATCCATTTTTATTGTGAAA 59.880 36.000 0.00 0.00 0.00 2.69
3730 3824 6.183360 GCACGCATCCATTTTTATTGTGAAAT 60.183 34.615 0.00 0.00 0.00 2.17
3731 3825 7.393327 CACGCATCCATTTTTATTGTGAAATC 58.607 34.615 0.00 0.00 0.00 2.17
3732 3826 7.276218 CACGCATCCATTTTTATTGTGAAATCT 59.724 33.333 0.00 0.00 0.00 2.40
3733 3827 7.818930 ACGCATCCATTTTTATTGTGAAATCTT 59.181 29.630 0.00 0.00 0.00 2.40
3734 3828 9.299963 CGCATCCATTTTTATTGTGAAATCTTA 57.700 29.630 0.00 0.00 0.00 2.10
3745 3839 9.753674 TTATTGTGAAATCTTAATCTTGAGGGT 57.246 29.630 0.00 0.00 0.00 4.34
3746 3840 8.655935 ATTGTGAAATCTTAATCTTGAGGGTT 57.344 30.769 0.00 0.00 0.00 4.11
3747 3841 8.477419 TTGTGAAATCTTAATCTTGAGGGTTT 57.523 30.769 0.00 0.00 0.00 3.27
3748 3842 7.885297 TGTGAAATCTTAATCTTGAGGGTTTG 58.115 34.615 0.00 0.00 0.00 2.93
3749 3843 6.808704 GTGAAATCTTAATCTTGAGGGTTTGC 59.191 38.462 0.00 0.00 0.00 3.68
3750 3844 5.921962 AATCTTAATCTTGAGGGTTTGCC 57.078 39.130 0.00 0.00 0.00 4.52
3759 3853 2.595172 GGGTTTGCCCGACGGAAA 60.595 61.111 17.49 6.01 46.51 3.13
3760 3854 2.194889 GGGTTTGCCCGACGGAAAA 61.195 57.895 17.49 12.78 46.51 2.29
3761 3855 1.734748 GGTTTGCCCGACGGAAAAA 59.265 52.632 17.49 12.40 38.50 1.94
3789 3883 9.950680 AATACACATGTTAGCATTAAATGTAGC 57.049 29.630 0.00 0.00 31.99 3.58
3790 3884 6.486248 ACACATGTTAGCATTAAATGTAGCG 58.514 36.000 0.00 0.00 31.99 4.26
3791 3885 5.909054 CACATGTTAGCATTAAATGTAGCGG 59.091 40.000 0.00 0.00 31.99 5.52
3792 3886 5.588648 ACATGTTAGCATTAAATGTAGCGGT 59.411 36.000 0.00 0.00 31.99 5.68
3793 3887 6.764085 ACATGTTAGCATTAAATGTAGCGGTA 59.236 34.615 0.00 0.00 31.99 4.02
3794 3888 7.281324 ACATGTTAGCATTAAATGTAGCGGTAA 59.719 33.333 0.00 0.00 31.99 2.85
3795 3889 7.795482 TGTTAGCATTAAATGTAGCGGTAAT 57.205 32.000 0.00 0.00 0.00 1.89
3796 3890 7.857569 TGTTAGCATTAAATGTAGCGGTAATC 58.142 34.615 0.00 0.00 0.00 1.75
3797 3891 7.713507 TGTTAGCATTAAATGTAGCGGTAATCT 59.286 33.333 0.00 0.00 0.00 2.40
3798 3892 8.557029 GTTAGCATTAAATGTAGCGGTAATCTT 58.443 33.333 0.00 0.00 0.00 2.40
3799 3893 9.767228 TTAGCATTAAATGTAGCGGTAATCTTA 57.233 29.630 0.00 0.00 0.00 2.10
3800 3894 8.848474 AGCATTAAATGTAGCGGTAATCTTAT 57.152 30.769 0.00 0.00 0.00 1.73
3801 3895 8.721478 AGCATTAAATGTAGCGGTAATCTTATG 58.279 33.333 0.00 0.00 0.00 1.90
3802 3896 7.962918 GCATTAAATGTAGCGGTAATCTTATGG 59.037 37.037 0.00 0.00 0.00 2.74
3803 3897 8.999431 CATTAAATGTAGCGGTAATCTTATGGT 58.001 33.333 0.00 0.00 0.00 3.55
3805 3899 9.701098 TTAAATGTAGCGGTAATCTTATGGTAG 57.299 33.333 0.00 0.00 0.00 3.18
3806 3900 7.534723 AATGTAGCGGTAATCTTATGGTAGA 57.465 36.000 0.00 0.00 0.00 2.59
3807 3901 6.323203 TGTAGCGGTAATCTTATGGTAGAC 57.677 41.667 0.00 0.00 0.00 2.59
3808 3902 4.868314 AGCGGTAATCTTATGGTAGACC 57.132 45.455 0.00 0.00 0.00 3.85
3809 3903 4.481072 AGCGGTAATCTTATGGTAGACCT 58.519 43.478 0.00 0.00 36.82 3.85
3810 3904 4.900054 AGCGGTAATCTTATGGTAGACCTT 59.100 41.667 0.00 0.00 36.82 3.50
3811 3905 5.010820 AGCGGTAATCTTATGGTAGACCTTC 59.989 44.000 0.00 0.00 36.82 3.46
3812 3906 5.221382 GCGGTAATCTTATGGTAGACCTTCA 60.221 44.000 0.00 0.00 36.82 3.02
3813 3907 6.518537 GCGGTAATCTTATGGTAGACCTTCAT 60.519 42.308 0.00 0.00 36.82 2.57
3814 3908 7.091443 CGGTAATCTTATGGTAGACCTTCATC 58.909 42.308 0.00 0.00 36.82 2.92
3815 3909 7.387643 GGTAATCTTATGGTAGACCTTCATCC 58.612 42.308 0.00 0.00 36.82 3.51
3816 3910 7.016268 GGTAATCTTATGGTAGACCTTCATCCA 59.984 40.741 0.00 0.00 36.82 3.41
3817 3911 7.451731 AATCTTATGGTAGACCTTCATCCAA 57.548 36.000 0.00 0.00 36.82 3.53
3818 3912 6.884472 TCTTATGGTAGACCTTCATCCAAA 57.116 37.500 0.00 0.00 36.82 3.28
3819 3913 7.451731 TCTTATGGTAGACCTTCATCCAAAT 57.548 36.000 0.00 0.00 36.82 2.32
3820 3914 7.872138 TCTTATGGTAGACCTTCATCCAAATT 58.128 34.615 0.00 0.00 36.82 1.82
3821 3915 8.998814 TCTTATGGTAGACCTTCATCCAAATTA 58.001 33.333 0.00 0.00 36.82 1.40
3822 3916 9.277783 CTTATGGTAGACCTTCATCCAAATTAG 57.722 37.037 0.00 0.00 36.82 1.73
3823 3917 6.636454 TGGTAGACCTTCATCCAAATTAGT 57.364 37.500 0.00 0.00 36.82 2.24
3824 3918 6.650120 TGGTAGACCTTCATCCAAATTAGTC 58.350 40.000 0.00 0.00 36.82 2.59
3825 3919 6.214615 TGGTAGACCTTCATCCAAATTAGTCA 59.785 38.462 0.00 0.00 36.82 3.41
3826 3920 7.110155 GGTAGACCTTCATCCAAATTAGTCAA 58.890 38.462 0.00 0.00 0.00 3.18
3827 3921 7.610305 GGTAGACCTTCATCCAAATTAGTCAAA 59.390 37.037 0.00 0.00 0.00 2.69
3828 3922 7.454260 AGACCTTCATCCAAATTAGTCAAAC 57.546 36.000 0.00 0.00 0.00 2.93
3829 3923 7.004086 AGACCTTCATCCAAATTAGTCAAACA 58.996 34.615 0.00 0.00 0.00 2.83
3830 3924 7.505585 AGACCTTCATCCAAATTAGTCAAACAA 59.494 33.333 0.00 0.00 0.00 2.83
3831 3925 8.017418 ACCTTCATCCAAATTAGTCAAACAAA 57.983 30.769 0.00 0.00 0.00 2.83
3832 3926 8.482128 ACCTTCATCCAAATTAGTCAAACAAAA 58.518 29.630 0.00 0.00 0.00 2.44
3833 3927 9.492973 CCTTCATCCAAATTAGTCAAACAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
3839 3933 9.829507 TCCAAATTAGTCAAACAAAATCATTGT 57.170 25.926 0.00 0.00 0.00 2.71
3855 3949 9.480053 AAAATCATTGTTTACATCTTCAAGTGG 57.520 29.630 0.00 0.00 0.00 4.00
3856 3950 6.012658 TCATTGTTTACATCTTCAAGTGGC 57.987 37.500 0.00 0.00 0.00 5.01
3857 3951 5.769662 TCATTGTTTACATCTTCAAGTGGCT 59.230 36.000 0.00 0.00 0.00 4.75
3858 3952 5.437289 TTGTTTACATCTTCAAGTGGCTG 57.563 39.130 0.00 0.00 0.00 4.85
3859 3953 3.253188 TGTTTACATCTTCAAGTGGCTGC 59.747 43.478 0.00 0.00 0.00 5.25
3862 3956 1.241165 CATCTTCAAGTGGCTGCACA 58.759 50.000 0.50 0.00 0.00 4.57
3867 3961 1.096967 TCAAGTGGCTGCACACACAG 61.097 55.000 18.81 9.41 43.72 3.66
3868 3962 1.096967 CAAGTGGCTGCACACACAGA 61.097 55.000 18.81 0.00 43.72 3.41
3869 3963 0.816825 AAGTGGCTGCACACACAGAG 60.817 55.000 18.81 0.00 43.72 3.35
3875 3969 2.740055 GCACACACAGAGGCGGAG 60.740 66.667 0.00 0.00 0.00 4.63
3893 3987 3.242543 CGGAGCCAGAAAAATCGAATGAG 60.243 47.826 0.00 0.00 0.00 2.90
3894 3988 3.691609 GGAGCCAGAAAAATCGAATGAGT 59.308 43.478 0.00 0.00 0.00 3.41
3932 4026 2.283173 CTTGTTGGGGAGGGCCAC 60.283 66.667 6.18 0.00 38.42 5.01
3975 4069 8.136800 TCATTGTTTACATGCATATTAGGCTTG 58.863 33.333 12.86 12.86 40.89 4.01
4019 4114 1.687612 CCTGCTGGTCCCATGTCTT 59.312 57.895 0.51 0.00 0.00 3.01
4025 4120 1.224592 GGTCCCATGTCTTCGCCAT 59.775 57.895 0.00 0.00 0.00 4.40
4073 4168 7.148069 CCCACGCATCTATATACTACAATGAGA 60.148 40.741 0.00 0.00 0.00 3.27
4095 4190 2.778299 TCACATACAGTTTCAGTGGGC 58.222 47.619 0.00 0.00 0.00 5.36
4209 4304 1.961277 CCAGACGGCCCGAATATGC 60.961 63.158 11.71 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.684242 TCAAACATGTAAGCACACGTAGAG 59.316 41.667 0.00 0.00 37.54 2.43
18 19 3.436704 AGGATCAAACATGTAAGCACACG 59.563 43.478 0.00 0.00 37.54 4.49
20 21 5.316167 AGAAGGATCAAACATGTAAGCACA 58.684 37.500 0.00 0.00 39.52 4.57
24 25 9.099454 GTAGGTTAGAAGGATCAAACATGTAAG 57.901 37.037 0.00 0.00 0.00 2.34
30 31 6.681729 AGTGTAGGTTAGAAGGATCAAACA 57.318 37.500 0.00 0.00 0.00 2.83
43 44 4.217118 GTCGGTGAAGAGAAGTGTAGGTTA 59.783 45.833 0.00 0.00 0.00 2.85
51 52 2.296471 ACAATCGTCGGTGAAGAGAAGT 59.704 45.455 4.18 0.00 0.00 3.01
65 66 9.840427 CCAGTGAAATAAAAGAATAACAATCGT 57.160 29.630 0.00 0.00 0.00 3.73
74 75 7.255942 CCCACAAGACCAGTGAAATAAAAGAAT 60.256 37.037 0.00 0.00 39.30 2.40
87 88 1.655114 AAAGGCCCCACAAGACCAGT 61.655 55.000 0.00 0.00 0.00 4.00
159 165 2.333069 CCTCCCTCATCAGAGCCATAA 58.667 52.381 0.00 0.00 40.68 1.90
168 174 2.142761 CATCGCCCCTCCCTCATCA 61.143 63.158 0.00 0.00 0.00 3.07
170 176 2.143419 GTCATCGCCCCTCCCTCAT 61.143 63.158 0.00 0.00 0.00 2.90
231 244 5.821470 TGACGGTACAAAGAACACCATAAAA 59.179 36.000 0.00 0.00 32.32 1.52
235 248 3.135994 GTGACGGTACAAAGAACACCAT 58.864 45.455 0.00 0.00 32.32 3.55
260 273 8.017946 GCAAAACTTCCGATCTATTCATAATCC 58.982 37.037 0.00 0.00 0.00 3.01
261 274 8.017946 GGCAAAACTTCCGATCTATTCATAATC 58.982 37.037 0.00 0.00 0.00 1.75
284 297 4.264460 AGAAATTATTTTGTTGCGGGCA 57.736 36.364 0.00 0.00 0.00 5.36
285 298 4.688413 TCAAGAAATTATTTTGTTGCGGGC 59.312 37.500 12.64 0.00 42.70 6.13
421 435 3.434984 CCCAAACCCGTATTGCATTTTTG 59.565 43.478 0.00 0.00 0.00 2.44
435 492 6.183360 CCATGTATTTATTACACCCCAAACCC 60.183 42.308 0.00 0.00 43.46 4.11
497 557 6.515512 AAAGAGCTAAAAGGGGCAGATATA 57.484 37.500 0.00 0.00 0.00 0.86
518 578 5.742063 TCATTGGCATGCCATTTGATTAAA 58.258 33.333 38.78 21.57 46.64 1.52
529 589 3.908081 CCGGCTCATTGGCATGCC 61.908 66.667 30.54 30.54 41.89 4.40
557 617 1.480545 ACAAAGCTTTGGTGGTTGACC 59.519 47.619 35.65 0.00 46.37 4.02
606 666 2.040009 CTGACCCCCTTGTCGTGTGT 62.040 60.000 0.00 0.00 38.11 3.72
634 694 5.763204 TCTTGATCGCTAGTTTTCTTTTGGT 59.237 36.000 0.00 0.00 0.00 3.67
652 712 4.914983 TCTGACTCCAAAAGCATCTTGAT 58.085 39.130 0.00 0.00 0.00 2.57
653 713 4.321718 CTCTGACTCCAAAAGCATCTTGA 58.678 43.478 0.00 0.00 0.00 3.02
682 742 0.034186 TCATGTGACCCAATCTGCCC 60.034 55.000 0.00 0.00 0.00 5.36
845 906 3.883489 ACAAACCTAGAAGGCAAAGACAC 59.117 43.478 0.00 0.00 39.63 3.67
994 1057 5.183904 GGCATTCTCCTTGTAACATTGACTT 59.816 40.000 0.00 0.00 0.00 3.01
1003 1066 2.354704 CGGACAGGCATTCTCCTTGTAA 60.355 50.000 0.00 0.00 33.25 2.41
1024 1087 4.521639 GTGGGAATAAATTACGGGGGAATC 59.478 45.833 0.00 0.00 0.00 2.52
1031 1094 4.186159 AGTGACGTGGGAATAAATTACGG 58.814 43.478 0.00 0.00 38.92 4.02
1033 1096 8.548721 CAATCTAGTGACGTGGGAATAAATTAC 58.451 37.037 0.00 0.00 0.00 1.89
1036 1099 6.650120 ACAATCTAGTGACGTGGGAATAAAT 58.350 36.000 0.00 0.00 0.00 1.40
1174 1237 3.232213 TCAGAATCGTGTAAGCAGGAC 57.768 47.619 0.00 0.00 41.51 3.85
1181 1244 3.767131 TGGACTGGATCAGAATCGTGTAA 59.233 43.478 1.59 0.00 35.18 2.41
1183 1246 2.167281 CTGGACTGGATCAGAATCGTGT 59.833 50.000 1.59 0.00 35.18 4.49
1230 1300 6.264292 CAGATATACTTGGTAGCTCACTCACT 59.736 42.308 0.00 0.00 0.00 3.41
1232 1302 5.010112 GCAGATATACTTGGTAGCTCACTCA 59.990 44.000 0.00 0.00 0.00 3.41
1234 1304 5.144100 AGCAGATATACTTGGTAGCTCACT 58.856 41.667 0.00 0.00 0.00 3.41
1236 1306 8.329502 TCTATAGCAGATATACTTGGTAGCTCA 58.670 37.037 0.00 0.00 32.70 4.26
1243 1313 9.249053 TCCTTCTTCTATAGCAGATATACTTGG 57.751 37.037 2.79 0.00 31.77 3.61
1259 1329 9.148879 CCCTAGTTATCATCTTTCCTTCTTCTA 57.851 37.037 0.00 0.00 0.00 2.10
1260 1330 7.846823 TCCCTAGTTATCATCTTTCCTTCTTCT 59.153 37.037 0.00 0.00 0.00 2.85
1302 1372 1.552337 TGCTTGTCCTCCACATCTCTC 59.448 52.381 0.00 0.00 33.90 3.20
1303 1373 1.554160 CTGCTTGTCCTCCACATCTCT 59.446 52.381 0.00 0.00 33.90 3.10
1340 1410 4.344390 CAGATCTCTTCCTGTCATCCATGA 59.656 45.833 0.00 0.00 0.00 3.07
1372 1442 0.807275 TCATTGAGATCCAGCGTGCG 60.807 55.000 0.00 0.00 0.00 5.34
1383 1453 7.955918 TCTCCATATCGATTTCTTCATTGAGA 58.044 34.615 1.71 3.37 0.00 3.27
1394 1464 3.157881 TCCTCGCTCTCCATATCGATTT 58.842 45.455 1.71 0.00 0.00 2.17
1395 1465 2.796557 TCCTCGCTCTCCATATCGATT 58.203 47.619 1.71 0.00 0.00 3.34
1413 1483 1.014564 CGTTGCCGACTTCTCCTTCC 61.015 60.000 0.00 0.00 35.63 3.46
1416 1486 3.773370 TCGTTGCCGACTTCTCCT 58.227 55.556 0.00 0.00 38.40 3.69
1429 1499 0.538977 TCCTCCTCGTCCTTGTCGTT 60.539 55.000 0.00 0.00 0.00 3.85
1436 1506 0.996762 ATCCTCCTCCTCCTCGTCCT 60.997 60.000 0.00 0.00 0.00 3.85
1437 1507 0.825840 CATCCTCCTCCTCCTCGTCC 60.826 65.000 0.00 0.00 0.00 4.79
1438 1508 0.183971 TCATCCTCCTCCTCCTCGTC 59.816 60.000 0.00 0.00 0.00 4.20
1443 1513 1.643310 CTCCATCATCCTCCTCCTCC 58.357 60.000 0.00 0.00 0.00 4.30
1446 1516 2.534990 CTACCTCCATCATCCTCCTCC 58.465 57.143 0.00 0.00 0.00 4.30
1611 1681 3.657398 ATGAAGGCCATGTGAAGATCA 57.343 42.857 5.01 0.00 33.39 2.92
1638 1708 1.816863 GACCACCAAGCCTCTCGACA 61.817 60.000 0.00 0.00 0.00 4.35
1656 1726 8.542080 AGTTCTAGCTAGTACTTACTCTCTTGA 58.458 37.037 23.13 0.00 37.73 3.02
1693 1763 9.481340 CCGATGATTATCTCAAGAAATCAAGTA 57.519 33.333 15.25 1.68 41.52 2.24
1707 1777 5.220662 CGAGCAAAACAACCGATGATTATCT 60.221 40.000 0.00 0.00 0.00 1.98
1711 1781 2.552315 ACGAGCAAAACAACCGATGATT 59.448 40.909 0.00 0.00 0.00 2.57
1715 1785 1.531149 CTCACGAGCAAAACAACCGAT 59.469 47.619 0.00 0.00 0.00 4.18
1716 1786 0.934496 CTCACGAGCAAAACAACCGA 59.066 50.000 0.00 0.00 0.00 4.69
1717 1787 0.934496 TCTCACGAGCAAAACAACCG 59.066 50.000 0.00 0.00 0.00 4.44
1718 1788 3.251004 AGAATCTCACGAGCAAAACAACC 59.749 43.478 0.00 0.00 0.00 3.77
1720 1790 5.931724 TCATAGAATCTCACGAGCAAAACAA 59.068 36.000 0.00 0.00 0.00 2.83
1721 1791 5.478407 TCATAGAATCTCACGAGCAAAACA 58.522 37.500 0.00 0.00 0.00 2.83
1722 1792 6.478344 AGATCATAGAATCTCACGAGCAAAAC 59.522 38.462 0.00 0.00 29.89 2.43
1723 1793 6.577103 AGATCATAGAATCTCACGAGCAAAA 58.423 36.000 0.00 0.00 29.89 2.44
1746 1816 3.236816 GGTGCACGAAACAAATCATGAG 58.763 45.455 11.45 0.00 0.00 2.90
1761 1831 5.066505 AGGAAATTAATCAGATTCGGTGCAC 59.933 40.000 8.80 8.80 0.00 4.57
1762 1832 5.192927 AGGAAATTAATCAGATTCGGTGCA 58.807 37.500 0.00 0.00 0.00 4.57
1763 1833 5.757850 AGGAAATTAATCAGATTCGGTGC 57.242 39.130 0.00 0.00 0.00 5.01
1764 1834 6.992715 AGGTAGGAAATTAATCAGATTCGGTG 59.007 38.462 0.00 0.00 0.00 4.94
1767 1837 7.652105 TCGAAGGTAGGAAATTAATCAGATTCG 59.348 37.037 0.00 0.00 35.80 3.34
1783 1853 9.197694 CTATATGAACAAGAAATCGAAGGTAGG 57.802 37.037 0.00 0.00 0.00 3.18
1844 1916 1.810412 GCAATACTGAGCCCCCTAACG 60.810 57.143 0.00 0.00 0.00 3.18
1905 1978 9.865321 AGTGAAGTATAAGCGAACTAATTGTAA 57.135 29.630 0.00 0.00 0.00 2.41
1907 1980 8.773404 AAGTGAAGTATAAGCGAACTAATTGT 57.227 30.769 0.00 0.00 0.00 2.71
1923 1996 9.422681 AGAGTCCTATGCTATTTAAGTGAAGTA 57.577 33.333 0.00 0.00 0.00 2.24
1924 1997 8.312669 AGAGTCCTATGCTATTTAAGTGAAGT 57.687 34.615 0.00 0.00 0.00 3.01
1925 1998 7.593273 CGAGAGTCCTATGCTATTTAAGTGAAG 59.407 40.741 0.00 0.00 0.00 3.02
1926 1999 7.426410 CGAGAGTCCTATGCTATTTAAGTGAA 58.574 38.462 0.00 0.00 0.00 3.18
1927 2000 6.016192 CCGAGAGTCCTATGCTATTTAAGTGA 60.016 42.308 0.00 0.00 0.00 3.41
1928 2001 6.153067 CCGAGAGTCCTATGCTATTTAAGTG 58.847 44.000 0.00 0.00 0.00 3.16
1929 2002 5.834204 ACCGAGAGTCCTATGCTATTTAAGT 59.166 40.000 0.00 0.00 0.00 2.24
1930 2003 6.334102 ACCGAGAGTCCTATGCTATTTAAG 57.666 41.667 0.00 0.00 0.00 1.85
1931 2004 6.726490 AACCGAGAGTCCTATGCTATTTAA 57.274 37.500 0.00 0.00 0.00 1.52
1932 2005 6.726490 AAACCGAGAGTCCTATGCTATTTA 57.274 37.500 0.00 0.00 0.00 1.40
1933 2006 5.615925 AAACCGAGAGTCCTATGCTATTT 57.384 39.130 0.00 0.00 0.00 1.40
1934 2007 6.493802 TCATAAACCGAGAGTCCTATGCTATT 59.506 38.462 0.00 0.00 29.91 1.73
1935 2008 6.010850 TCATAAACCGAGAGTCCTATGCTAT 58.989 40.000 0.00 0.00 29.91 2.97
1936 2009 5.382616 TCATAAACCGAGAGTCCTATGCTA 58.617 41.667 0.00 0.00 29.91 3.49
1937 2010 4.215908 TCATAAACCGAGAGTCCTATGCT 58.784 43.478 0.00 0.00 29.91 3.79
1943 2016 7.813627 GGTAAATAGATCATAAACCGAGAGTCC 59.186 40.741 0.00 0.00 0.00 3.85
1944 2017 8.578151 AGGTAAATAGATCATAAACCGAGAGTC 58.422 37.037 0.00 0.00 30.30 3.36
2002 2075 1.522569 CCCTGATCCGTTGACCCTC 59.477 63.158 0.00 0.00 0.00 4.30
2004 2077 1.972660 CTCCCCTGATCCGTTGACCC 61.973 65.000 0.00 0.00 0.00 4.46
2025 2098 7.443302 TGATTAATGAGAACCTGAGGAGATT 57.557 36.000 4.99 0.00 0.00 2.40
2044 2117 5.874810 CAGAGTGGAGTTTTTCGGATGATTA 59.125 40.000 0.00 0.00 0.00 1.75
2049 2122 4.559862 ATCAGAGTGGAGTTTTTCGGAT 57.440 40.909 0.00 0.00 0.00 4.18
2050 2123 4.202315 TGAATCAGAGTGGAGTTTTTCGGA 60.202 41.667 0.00 0.00 0.00 4.55
2051 2124 4.065088 TGAATCAGAGTGGAGTTTTTCGG 58.935 43.478 0.00 0.00 0.00 4.30
2052 2125 4.083802 GGTGAATCAGAGTGGAGTTTTTCG 60.084 45.833 0.00 0.00 0.00 3.46
2053 2126 5.066593 AGGTGAATCAGAGTGGAGTTTTTC 58.933 41.667 0.00 0.00 0.00 2.29
2056 2129 5.825593 TTAGGTGAATCAGAGTGGAGTTT 57.174 39.130 0.00 0.00 0.00 2.66
2057 2130 5.825593 TTTAGGTGAATCAGAGTGGAGTT 57.174 39.130 0.00 0.00 0.00 3.01
2058 2131 5.071788 TGTTTTAGGTGAATCAGAGTGGAGT 59.928 40.000 0.00 0.00 0.00 3.85
2060 2133 5.071788 AGTGTTTTAGGTGAATCAGAGTGGA 59.928 40.000 0.00 0.00 0.00 4.02
2061 2134 5.308825 AGTGTTTTAGGTGAATCAGAGTGG 58.691 41.667 0.00 0.00 0.00 4.00
2062 2135 6.260936 ACAAGTGTTTTAGGTGAATCAGAGTG 59.739 38.462 0.00 0.00 0.00 3.51
2063 2136 6.260936 CACAAGTGTTTTAGGTGAATCAGAGT 59.739 38.462 0.00 0.00 0.00 3.24
2064 2137 6.662616 CACAAGTGTTTTAGGTGAATCAGAG 58.337 40.000 0.00 0.00 0.00 3.35
2068 2141 5.008613 TCAGCACAAGTGTTTTAGGTGAATC 59.991 40.000 1.79 0.00 31.52 2.52
2098 2171 5.065090 CGCCACATGTAGAAGATTGAAATCA 59.935 40.000 0.00 0.00 37.89 2.57
2100 2173 5.185454 TCGCCACATGTAGAAGATTGAAAT 58.815 37.500 0.00 0.00 0.00 2.17
2102 2175 4.183865 CTCGCCACATGTAGAAGATTGAA 58.816 43.478 0.00 0.00 0.00 2.69
2104 2177 2.286294 GCTCGCCACATGTAGAAGATTG 59.714 50.000 0.00 0.00 0.00 2.67
2105 2178 2.093500 TGCTCGCCACATGTAGAAGATT 60.093 45.455 0.00 0.00 0.00 2.40
2106 2179 1.482182 TGCTCGCCACATGTAGAAGAT 59.518 47.619 0.00 0.00 0.00 2.40
2126 2207 7.410174 TGGAAATCCATAGGTGAAAATACTGT 58.590 34.615 0.00 0.00 42.01 3.55
2164 2245 2.362169 TGTCATGAAAGCGTCGATCA 57.638 45.000 0.00 0.00 0.00 2.92
2263 2344 1.226888 GCGGCTAGTAGTGTTCCCG 60.227 63.158 8.36 8.36 38.76 5.14
2272 2356 0.775542 TCCCATAGAGGCGGCTAGTA 59.224 55.000 13.24 7.29 35.39 1.82
2274 2358 1.205893 GAATCCCATAGAGGCGGCTAG 59.794 57.143 13.24 2.04 35.39 3.42
2309 2393 0.250640 GATTGCATCGGAGATGGCCT 60.251 55.000 3.32 0.00 45.12 5.19
2342 2426 7.168219 AGTGATAGAATTTACCTGAAACTGCA 58.832 34.615 0.00 0.00 0.00 4.41
2375 2460 5.221067 CGTCTCTGCAGAATAGCTAGGTTTA 60.221 44.000 18.85 0.00 34.99 2.01
2385 2470 2.032808 CGTCGATCGTCTCTGCAGAATA 60.033 50.000 18.85 6.08 34.52 1.75
2405 2490 4.377021 TCATGAATTAGGGTTTCGATCCG 58.623 43.478 0.00 0.00 0.00 4.18
2406 2491 5.997746 TCATCATGAATTAGGGTTTCGATCC 59.002 40.000 0.00 0.00 0.00 3.36
2470 2555 1.272490 CATCATTCCTGGCCATCATGC 59.728 52.381 5.51 0.00 0.00 4.06
2576 2661 2.547826 CTCTCATCTCGCATTTGCTCA 58.452 47.619 0.51 0.00 39.32 4.26
2781 2872 3.004002 TGCTGTTCAAGATGCTTCTGTTG 59.996 43.478 2.39 0.00 30.72 3.33
2783 2874 2.812591 CTGCTGTTCAAGATGCTTCTGT 59.187 45.455 2.39 0.00 30.72 3.41
2816 2907 1.202256 CGCATCTTGTCGGCTAGTGTA 60.202 52.381 0.00 0.00 0.00 2.90
2832 2923 4.845580 CTCTGCCGGAAGCCGCAT 62.846 66.667 5.05 0.00 46.86 4.73
2890 2981 1.257750 TGTCCCATCTGTGGTCTCGG 61.258 60.000 0.00 0.00 44.48 4.63
2894 2985 1.079127 CGGTGTCCCATCTGTGGTC 60.079 63.158 0.00 0.00 44.48 4.02
2895 2986 1.535444 TCGGTGTCCCATCTGTGGT 60.535 57.895 0.00 0.00 44.48 4.16
2937 3028 0.826715 TCTTTCTCCCTCGATGCAGG 59.173 55.000 0.00 0.00 0.00 4.85
2952 3043 1.999648 TTGGCATGTTCCAGCTCTTT 58.000 45.000 0.00 0.00 37.44 2.52
2972 3063 1.600013 GAGAGCGAGATCGACAGCTTA 59.400 52.381 6.39 0.00 43.02 3.09
3103 3194 2.725221 AAGATCTCACTCCAATGCCC 57.275 50.000 0.00 0.00 0.00 5.36
3138 3230 3.191078 TGCAATTTTTGGACAACCCTG 57.809 42.857 0.00 0.00 35.38 4.45
3179 3271 7.877612 AGGGCAAAGGTTAATTTAACAATCTTG 59.122 33.333 18.41 15.03 40.39 3.02
3191 3283 3.591977 ACTGGTAGAGGGCAAAGGTTAAT 59.408 43.478 0.00 0.00 0.00 1.40
3202 3294 4.999310 TCTCCATATGTACTGGTAGAGGG 58.001 47.826 1.24 0.00 35.19 4.30
3228 3321 8.729805 ACAAATTTACCAACAAACATGACATT 57.270 26.923 0.00 0.00 0.00 2.71
3266 3359 2.028658 ACGTACCGATCGAGAGGCTATA 60.029 50.000 18.66 0.00 0.00 1.31
3268 3361 0.105593 ACGTACCGATCGAGAGGCTA 59.894 55.000 18.66 0.00 0.00 3.93
3376 3470 0.178964 CCCAAAAGAACTGGCCCTGA 60.179 55.000 0.00 0.00 32.10 3.86
3405 3499 3.236047 ACACCCCTCCAAAATGTTTACC 58.764 45.455 0.00 0.00 0.00 2.85
3406 3500 3.257375 GGACACCCCTCCAAAATGTTTAC 59.743 47.826 0.00 0.00 0.00 2.01
3407 3501 3.502356 GGACACCCCTCCAAAATGTTTA 58.498 45.455 0.00 0.00 0.00 2.01
3408 3502 2.325484 GGACACCCCTCCAAAATGTTT 58.675 47.619 0.00 0.00 0.00 2.83
3409 3503 1.821666 CGGACACCCCTCCAAAATGTT 60.822 52.381 0.00 0.00 0.00 2.71
3410 3504 0.251165 CGGACACCCCTCCAAAATGT 60.251 55.000 0.00 0.00 0.00 2.71
3411 3505 0.965363 CCGGACACCCCTCCAAAATG 60.965 60.000 0.00 0.00 0.00 2.32
3412 3506 1.382629 CCGGACACCCCTCCAAAAT 59.617 57.895 0.00 0.00 0.00 1.82
3413 3507 2.840576 CCGGACACCCCTCCAAAA 59.159 61.111 0.00 0.00 0.00 2.44
3414 3508 3.961414 GCCGGACACCCCTCCAAA 61.961 66.667 5.05 0.00 0.00 3.28
3415 3509 4.974438 AGCCGGACACCCCTCCAA 62.974 66.667 5.05 0.00 0.00 3.53
3416 3510 2.833151 ATAAGCCGGACACCCCTCCA 62.833 60.000 5.05 0.00 0.00 3.86
3417 3511 2.070650 ATAAGCCGGACACCCCTCC 61.071 63.158 5.05 0.00 0.00 4.30
3418 3512 1.146263 CATAAGCCGGACACCCCTC 59.854 63.158 5.05 0.00 0.00 4.30
3419 3513 1.306654 TCATAAGCCGGACACCCCT 60.307 57.895 5.05 0.00 0.00 4.79
3420 3514 1.146263 CTCATAAGCCGGACACCCC 59.854 63.158 5.05 0.00 0.00 4.95
3421 3515 0.462047 CACTCATAAGCCGGACACCC 60.462 60.000 5.05 0.00 0.00 4.61
3422 3516 0.249398 ACACTCATAAGCCGGACACC 59.751 55.000 5.05 0.00 0.00 4.16
3423 3517 1.204941 AGACACTCATAAGCCGGACAC 59.795 52.381 5.05 0.00 0.00 3.67
3424 3518 1.204704 CAGACACTCATAAGCCGGACA 59.795 52.381 5.05 0.00 0.00 4.02
3425 3519 1.204941 ACAGACACTCATAAGCCGGAC 59.795 52.381 5.05 0.00 0.00 4.79
3426 3520 1.476891 GACAGACACTCATAAGCCGGA 59.523 52.381 5.05 0.00 0.00 5.14
3427 3521 1.204704 TGACAGACACTCATAAGCCGG 59.795 52.381 0.00 0.00 0.00 6.13
3428 3522 2.654749 TGACAGACACTCATAAGCCG 57.345 50.000 0.00 0.00 0.00 5.52
3429 3523 5.886960 ATTTTGACAGACACTCATAAGCC 57.113 39.130 0.00 0.00 0.00 4.35
3430 3524 8.034058 ACTTATTTTGACAGACACTCATAAGC 57.966 34.615 0.00 0.00 31.73 3.09
3434 3528 9.167311 GGATAACTTATTTTGACAGACACTCAT 57.833 33.333 0.00 0.00 0.00 2.90
3435 3529 8.154203 TGGATAACTTATTTTGACAGACACTCA 58.846 33.333 0.00 0.00 0.00 3.41
3436 3530 8.547967 TGGATAACTTATTTTGACAGACACTC 57.452 34.615 0.00 0.00 0.00 3.51
3457 3551 4.102524 TGCCAGAATAAACTCGGTATGGAT 59.897 41.667 0.00 0.00 0.00 3.41
3458 3552 3.452990 TGCCAGAATAAACTCGGTATGGA 59.547 43.478 0.00 0.00 0.00 3.41
3466 3560 1.017387 CCGGCTGCCAGAATAAACTC 58.983 55.000 20.29 0.00 0.00 3.01
3621 3715 6.401047 AGATTACCGCTACATTTAGTGCTA 57.599 37.500 0.00 0.00 34.87 3.49
3633 3727 5.638133 AGGTCTACCATAAGATTACCGCTA 58.362 41.667 1.26 0.00 38.89 4.26
3637 3731 7.016268 TGGATGAAGGTCTACCATAAGATTACC 59.984 40.741 1.26 0.00 38.89 2.85
3655 3749 9.185192 GACTTTGTTTGACTAATTTGGATGAAG 57.815 33.333 0.00 0.00 0.00 3.02
3656 3750 8.690884 TGACTTTGTTTGACTAATTTGGATGAA 58.309 29.630 0.00 0.00 0.00 2.57
3705 3799 4.172505 TCACAATAAAAATGGATGCGTGC 58.827 39.130 0.00 0.00 0.00 5.34
3706 3800 6.702972 TTTCACAATAAAAATGGATGCGTG 57.297 33.333 0.00 0.00 0.00 5.34
3707 3801 7.322664 AGATTTCACAATAAAAATGGATGCGT 58.677 30.769 0.00 0.00 0.00 5.24
3708 3802 7.760131 AGATTTCACAATAAAAATGGATGCG 57.240 32.000 0.00 0.00 0.00 4.73
3719 3813 9.753674 ACCCTCAAGATTAAGATTTCACAATAA 57.246 29.630 0.00 0.00 0.00 1.40
3720 3814 9.753674 AACCCTCAAGATTAAGATTTCACAATA 57.246 29.630 0.00 0.00 0.00 1.90
3721 3815 8.655935 AACCCTCAAGATTAAGATTTCACAAT 57.344 30.769 0.00 0.00 0.00 2.71
3722 3816 8.359642 CAAACCCTCAAGATTAAGATTTCACAA 58.640 33.333 0.00 0.00 0.00 3.33
3723 3817 7.523709 GCAAACCCTCAAGATTAAGATTTCACA 60.524 37.037 0.00 0.00 0.00 3.58
3724 3818 6.808704 GCAAACCCTCAAGATTAAGATTTCAC 59.191 38.462 0.00 0.00 0.00 3.18
3725 3819 6.071391 GGCAAACCCTCAAGATTAAGATTTCA 60.071 38.462 0.00 0.00 0.00 2.69
3726 3820 6.333416 GGCAAACCCTCAAGATTAAGATTTC 58.667 40.000 0.00 0.00 0.00 2.17
3727 3821 6.286240 GGCAAACCCTCAAGATTAAGATTT 57.714 37.500 0.00 0.00 0.00 2.17
3728 3822 5.921962 GGCAAACCCTCAAGATTAAGATT 57.078 39.130 0.00 0.00 0.00 2.40
3743 3837 1.734748 TTTTTCCGTCGGGCAAACC 59.265 52.632 12.29 0.00 27.73 3.27
3763 3857 9.950680 GCTACATTTAATGCTAACATGTGTATT 57.049 29.630 0.00 1.79 36.36 1.89
3764 3858 8.282592 CGCTACATTTAATGCTAACATGTGTAT 58.717 33.333 0.00 0.00 36.36 2.29
3765 3859 7.254624 CCGCTACATTTAATGCTAACATGTGTA 60.255 37.037 0.00 0.00 36.36 2.90
3766 3860 6.458206 CCGCTACATTTAATGCTAACATGTGT 60.458 38.462 0.00 0.00 36.36 3.72
3767 3861 5.909054 CCGCTACATTTAATGCTAACATGTG 59.091 40.000 0.00 0.00 36.36 3.21
3768 3862 5.588648 ACCGCTACATTTAATGCTAACATGT 59.411 36.000 4.68 0.00 36.36 3.21
3769 3863 6.060028 ACCGCTACATTTAATGCTAACATG 57.940 37.500 4.68 0.00 36.36 3.21
3770 3864 7.795482 TTACCGCTACATTTAATGCTAACAT 57.205 32.000 4.68 0.00 38.49 2.71
3771 3865 7.713507 AGATTACCGCTACATTTAATGCTAACA 59.286 33.333 4.68 0.00 0.00 2.41
3772 3866 8.084590 AGATTACCGCTACATTTAATGCTAAC 57.915 34.615 4.68 0.00 0.00 2.34
3773 3867 8.671384 AAGATTACCGCTACATTTAATGCTAA 57.329 30.769 4.68 0.00 0.00 3.09
3774 3868 9.938280 ATAAGATTACCGCTACATTTAATGCTA 57.062 29.630 4.68 0.00 0.00 3.49
3775 3869 8.721478 CATAAGATTACCGCTACATTTAATGCT 58.279 33.333 4.68 0.00 0.00 3.79
3776 3870 7.962918 CCATAAGATTACCGCTACATTTAATGC 59.037 37.037 4.68 0.00 0.00 3.56
3777 3871 8.999431 ACCATAAGATTACCGCTACATTTAATG 58.001 33.333 3.07 3.07 0.00 1.90
3779 3873 9.701098 CTACCATAAGATTACCGCTACATTTAA 57.299 33.333 0.00 0.00 0.00 1.52
3780 3874 9.081204 TCTACCATAAGATTACCGCTACATTTA 57.919 33.333 0.00 0.00 0.00 1.40
3781 3875 7.871463 GTCTACCATAAGATTACCGCTACATTT 59.129 37.037 0.00 0.00 0.00 2.32
3782 3876 7.376615 GTCTACCATAAGATTACCGCTACATT 58.623 38.462 0.00 0.00 0.00 2.71
3783 3877 6.071503 GGTCTACCATAAGATTACCGCTACAT 60.072 42.308 0.00 0.00 35.64 2.29
3784 3878 5.242393 GGTCTACCATAAGATTACCGCTACA 59.758 44.000 0.00 0.00 35.64 2.74
3785 3879 5.476254 AGGTCTACCATAAGATTACCGCTAC 59.524 44.000 1.26 0.00 38.89 3.58
3786 3880 5.638133 AGGTCTACCATAAGATTACCGCTA 58.362 41.667 1.26 0.00 38.89 4.26
3787 3881 4.481072 AGGTCTACCATAAGATTACCGCT 58.519 43.478 1.26 0.00 38.89 5.52
3788 3882 4.868314 AGGTCTACCATAAGATTACCGC 57.132 45.455 1.26 0.00 38.89 5.68
3789 3883 6.401047 TGAAGGTCTACCATAAGATTACCG 57.599 41.667 1.26 0.00 38.89 4.02
3790 3884 7.016268 TGGATGAAGGTCTACCATAAGATTACC 59.984 40.741 1.26 0.00 38.89 2.85
3791 3885 7.963532 TGGATGAAGGTCTACCATAAGATTAC 58.036 38.462 1.26 0.00 38.89 1.89
3792 3886 8.561536 TTGGATGAAGGTCTACCATAAGATTA 57.438 34.615 1.26 0.00 38.89 1.75
3793 3887 7.451731 TTGGATGAAGGTCTACCATAAGATT 57.548 36.000 1.26 0.00 38.89 2.40
3794 3888 7.451731 TTTGGATGAAGGTCTACCATAAGAT 57.548 36.000 1.26 0.00 38.89 2.40
3795 3889 6.884472 TTTGGATGAAGGTCTACCATAAGA 57.116 37.500 1.26 0.00 38.89 2.10
3796 3890 9.277783 CTAATTTGGATGAAGGTCTACCATAAG 57.722 37.037 1.26 0.00 38.89 1.73
3797 3891 8.778059 ACTAATTTGGATGAAGGTCTACCATAA 58.222 33.333 1.26 0.00 38.89 1.90
3798 3892 8.331931 ACTAATTTGGATGAAGGTCTACCATA 57.668 34.615 1.26 0.00 38.89 2.74
3799 3893 7.092444 TGACTAATTTGGATGAAGGTCTACCAT 60.092 37.037 1.26 0.00 38.89 3.55
3800 3894 6.214615 TGACTAATTTGGATGAAGGTCTACCA 59.785 38.462 1.26 0.00 38.89 3.25
3801 3895 6.650120 TGACTAATTTGGATGAAGGTCTACC 58.350 40.000 0.00 0.00 0.00 3.18
3802 3896 8.451748 GTTTGACTAATTTGGATGAAGGTCTAC 58.548 37.037 0.00 0.00 0.00 2.59
3803 3897 8.160765 TGTTTGACTAATTTGGATGAAGGTCTA 58.839 33.333 0.00 0.00 0.00 2.59
3804 3898 7.004086 TGTTTGACTAATTTGGATGAAGGTCT 58.996 34.615 0.00 0.00 0.00 3.85
3805 3899 7.214467 TGTTTGACTAATTTGGATGAAGGTC 57.786 36.000 0.00 0.00 0.00 3.85
3806 3900 7.595819 TTGTTTGACTAATTTGGATGAAGGT 57.404 32.000 0.00 0.00 0.00 3.50
3807 3901 8.885494 TTTTGTTTGACTAATTTGGATGAAGG 57.115 30.769 0.00 0.00 0.00 3.46
3813 3907 9.829507 ACAATGATTTTGTTTGACTAATTTGGA 57.170 25.926 0.00 0.00 0.00 3.53
3829 3923 9.480053 CCACTTGAAGATGTAAACAATGATTTT 57.520 29.630 0.00 0.00 0.00 1.82
3830 3924 7.599998 GCCACTTGAAGATGTAAACAATGATTT 59.400 33.333 0.00 0.00 0.00 2.17
3831 3925 7.039504 AGCCACTTGAAGATGTAAACAATGATT 60.040 33.333 0.00 0.00 0.00 2.57
3832 3926 6.435277 AGCCACTTGAAGATGTAAACAATGAT 59.565 34.615 0.00 0.00 0.00 2.45
3833 3927 5.769662 AGCCACTTGAAGATGTAAACAATGA 59.230 36.000 0.00 0.00 0.00 2.57
3834 3928 5.860182 CAGCCACTTGAAGATGTAAACAATG 59.140 40.000 0.00 0.00 0.00 2.82
3835 3929 5.565439 GCAGCCACTTGAAGATGTAAACAAT 60.565 40.000 0.00 0.00 0.00 2.71
3836 3930 4.261572 GCAGCCACTTGAAGATGTAAACAA 60.262 41.667 0.00 0.00 0.00 2.83
3837 3931 3.253188 GCAGCCACTTGAAGATGTAAACA 59.747 43.478 0.00 0.00 0.00 2.83
3838 3932 3.253188 TGCAGCCACTTGAAGATGTAAAC 59.747 43.478 0.00 0.00 0.00 2.01
3839 3933 3.253188 GTGCAGCCACTTGAAGATGTAAA 59.747 43.478 0.00 0.00 38.93 2.01
3840 3934 2.813754 GTGCAGCCACTTGAAGATGTAA 59.186 45.455 0.00 0.00 38.93 2.41
3841 3935 2.224499 TGTGCAGCCACTTGAAGATGTA 60.224 45.455 0.00 0.00 42.54 2.29
3842 3936 1.242076 GTGCAGCCACTTGAAGATGT 58.758 50.000 0.00 0.00 38.93 3.06
3843 3937 1.068748 GTGTGCAGCCACTTGAAGATG 60.069 52.381 0.00 0.00 42.54 2.90
3844 3938 1.242076 GTGTGCAGCCACTTGAAGAT 58.758 50.000 0.00 0.00 42.54 2.40
3845 3939 0.107263 TGTGTGCAGCCACTTGAAGA 60.107 50.000 13.25 0.00 42.54 2.87
3846 3940 0.029834 GTGTGTGCAGCCACTTGAAG 59.970 55.000 13.25 0.00 42.54 3.02
3847 3941 0.679321 TGTGTGTGCAGCCACTTGAA 60.679 50.000 14.74 0.00 42.54 2.69
3848 3942 1.077858 TGTGTGTGCAGCCACTTGA 60.078 52.632 14.74 0.00 42.54 3.02
3849 3943 1.096967 TCTGTGTGTGCAGCCACTTG 61.097 55.000 14.74 9.04 42.54 3.16
3850 3944 0.816825 CTCTGTGTGTGCAGCCACTT 60.817 55.000 14.74 0.00 42.54 3.16
3851 3945 1.227764 CTCTGTGTGTGCAGCCACT 60.228 57.895 14.74 0.00 42.54 4.00
3852 3946 2.256591 CCTCTGTGTGTGCAGCCAC 61.257 63.158 8.41 8.41 42.40 5.01
3853 3947 2.111669 CCTCTGTGTGTGCAGCCA 59.888 61.111 0.00 0.00 36.49 4.75
3854 3948 3.360340 GCCTCTGTGTGTGCAGCC 61.360 66.667 0.00 0.00 36.49 4.85
3855 3949 3.720193 CGCCTCTGTGTGTGCAGC 61.720 66.667 0.00 0.00 36.49 5.25
3856 3950 3.046087 CCGCCTCTGTGTGTGCAG 61.046 66.667 0.00 0.00 37.81 4.41
3857 3951 3.519973 CTCCGCCTCTGTGTGTGCA 62.520 63.158 0.00 0.00 0.00 4.57
3858 3952 2.740055 CTCCGCCTCTGTGTGTGC 60.740 66.667 0.00 0.00 0.00 4.57
3859 3953 2.740055 GCTCCGCCTCTGTGTGTG 60.740 66.667 0.00 0.00 0.00 3.82
3875 3969 3.428045 CCCACTCATTCGATTTTTCTGGC 60.428 47.826 0.00 0.00 0.00 4.85
3893 3987 0.825840 TTAGCAACACTTGGCCCCAC 60.826 55.000 0.00 0.00 0.00 4.61
3894 3988 0.539438 CTTAGCAACACTTGGCCCCA 60.539 55.000 0.00 0.00 0.00 4.96
3975 4069 2.256117 CCCCCTAACATCACCGATTC 57.744 55.000 0.00 0.00 0.00 2.52
4019 4114 3.029810 GTGTGTGCACAATGGCGA 58.970 55.556 23.59 0.00 43.77 5.54
4036 4131 3.365265 GCGTGGGAGTTTGGCCTG 61.365 66.667 3.32 0.00 0.00 4.85
4043 4138 6.008331 TGTAGTATATAGATGCGTGGGAGTT 58.992 40.000 0.00 0.00 0.00 3.01
4073 4168 3.758554 GCCCACTGAAACTGTATGTGATT 59.241 43.478 0.00 0.00 0.00 2.57
4082 4177 1.605710 CAAGACTGCCCACTGAAACTG 59.394 52.381 0.00 0.00 0.00 3.16
4095 4190 2.802816 GTGCTGGTTGTCTACAAGACTG 59.197 50.000 8.42 0.00 45.27 3.51
4113 4208 7.308435 ACAATATTAGAGTTTCAAGCTTGTGC 58.692 34.615 25.19 15.89 40.05 4.57
4170 4265 7.342026 GTCTGGGTTCTTTTTATATTGGGTCAT 59.658 37.037 0.00 0.00 0.00 3.06
4172 4267 6.183360 CGTCTGGGTTCTTTTTATATTGGGTC 60.183 42.308 0.00 0.00 0.00 4.46
4182 4277 0.826256 GGGCCGTCTGGGTTCTTTTT 60.826 55.000 0.00 0.00 38.44 1.94
4183 4278 1.228459 GGGCCGTCTGGGTTCTTTT 60.228 57.895 0.00 0.00 38.44 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.