Multiple sequence alignment - TraesCS6B01G137900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G137900 chr6B 100.000 2502 0 0 1 2502 135359127 135361628 0.000000e+00 4621.0
1 TraesCS6B01G137900 chr6B 86.455 347 38 8 782 1125 135139133 135139473 3.040000e-99 372.0
2 TraesCS6B01G137900 chr6B 91.000 100 9 0 2262 2361 498518658 498518559 4.340000e-28 135.0
3 TraesCS6B01G137900 chr6D 94.561 717 29 6 794 1505 61411684 61412395 0.000000e+00 1099.0
4 TraesCS6B01G137900 chr6D 94.964 139 7 0 651 789 279120858 279120720 4.190000e-53 219.0
5 TraesCS6B01G137900 chr6D 94.964 139 7 0 651 789 283094690 283094552 4.190000e-53 219.0
6 TraesCS6B01G137900 chr6D 94.186 86 4 1 567 652 352086390 352086474 2.020000e-26 130.0
7 TraesCS6B01G137900 chr6D 94.805 77 4 0 483 559 61411491 61411567 1.220000e-23 121.0
8 TraesCS6B01G137900 chr6D 82.222 90 13 3 1136 1222 61192119 61192208 9.600000e-10 75.0
9 TraesCS6B01G137900 chr6D 100.000 28 0 0 2155 2182 368991711 368991684 4.000000e-03 52.8
10 TraesCS6B01G137900 chr6D 100.000 28 0 0 2155 2182 394681747 394681720 4.000000e-03 52.8
11 TraesCS6B01G137900 chr6A 91.704 675 42 10 876 1537 78567277 78567950 0.000000e+00 924.0
12 TraesCS6B01G137900 chr6A 95.549 337 13 2 1873 2208 78570394 78570729 2.830000e-149 538.0
13 TraesCS6B01G137900 chr6A 93.413 334 17 2 1545 1876 78567928 78568258 8.040000e-135 490.0
14 TraesCS6B01G137900 chr6A 86.742 445 46 9 782 1222 77962897 77963332 1.350000e-132 483.0
15 TraesCS6B01G137900 chr6A 85.843 445 49 10 782 1222 78127432 78127866 6.310000e-126 460.0
16 TraesCS6B01G137900 chr6A 84.944 445 51 13 782 1222 77912339 77912771 1.060000e-118 436.0
17 TraesCS6B01G137900 chr6A 92.808 292 21 0 2206 2497 78570788 78571079 8.270000e-115 424.0
18 TraesCS6B01G137900 chr6A 90.598 234 15 3 1 230 78566822 78567052 1.120000e-78 303.0
19 TraesCS6B01G137900 chr7A 95.785 261 9 1 228 486 101272061 101271801 1.070000e-113 420.0
20 TraesCS6B01G137900 chr7A 95.113 266 10 2 228 490 506291583 506291318 1.380000e-112 416.0
21 TraesCS6B01G137900 chr5B 95.785 261 8 2 225 483 544533433 544533174 3.850000e-113 418.0
22 TraesCS6B01G137900 chr5B 94.366 142 8 0 651 792 407636885 407637026 4.190000e-53 219.0
23 TraesCS6B01G137900 chr5B 91.228 57 5 0 2138 2194 214138157 214138213 7.420000e-11 78.7
24 TraesCS6B01G137900 chr4A 94.796 269 12 1 222 488 690420787 690421055 3.850000e-113 418.0
25 TraesCS6B01G137900 chr4A 93.258 89 5 1 564 652 422285037 422285124 2.020000e-26 130.0
26 TraesCS6B01G137900 chr4A 91.304 69 6 0 2138 2206 161260600 161260668 7.370000e-16 95.3
27 TraesCS6B01G137900 chr4A 88.406 69 8 0 2138 2206 3998632 3998564 1.590000e-12 84.2
28 TraesCS6B01G137900 chr3A 95.437 263 10 1 227 487 234262846 234263108 3.850000e-113 418.0
29 TraesCS6B01G137900 chr3A 92.754 69 4 1 2129 2196 40850578 40850646 5.700000e-17 99.0
30 TraesCS6B01G137900 chr3A 94.737 57 3 0 2138 2194 107565605 107565549 3.430000e-14 89.8
31 TraesCS6B01G137900 chr1B 95.437 263 10 1 226 486 657346570 657346308 3.850000e-113 418.0
32 TraesCS6B01G137900 chr1B 92.982 57 4 0 2138 2194 494234817 494234873 1.590000e-12 84.2
33 TraesCS6B01G137900 chr1A 95.420 262 10 1 227 486 62255974 62255713 1.380000e-112 416.0
34 TraesCS6B01G137900 chr1A 94.964 139 7 0 651 789 231444509 231444371 4.190000e-53 219.0
35 TraesCS6B01G137900 chr1A 94.186 86 4 1 567 652 147500051 147500135 2.020000e-26 130.0
36 TraesCS6B01G137900 chr3B 92.982 285 16 3 219 501 200176102 200175820 1.790000e-111 412.0
37 TraesCS6B01G137900 chr3B 92.632 285 17 3 219 501 200221431 200221149 8.330000e-110 407.0
38 TraesCS6B01G137900 chr3B 96.078 51 2 0 2144 2194 256728198 256728148 1.590000e-12 84.2
39 TraesCS6B01G137900 chr3B 88.679 53 6 0 1630 1682 676346603 676346551 5.780000e-07 65.8
40 TraesCS6B01G137900 chr7D 95.000 140 7 0 651 790 112162618 112162757 1.160000e-53 220.0
41 TraesCS6B01G137900 chr7D 94.737 57 3 0 2138 2194 66408566 66408510 3.430000e-14 89.8
42 TraesCS6B01G137900 chr7D 93.617 47 3 0 2151 2197 598742159 598742113 1.240000e-08 71.3
43 TraesCS6B01G137900 chr5A 95.000 140 7 0 651 790 93851109 93851248 1.160000e-53 220.0
44 TraesCS6B01G137900 chr5A 95.294 85 3 1 568 652 642855544 642855627 1.560000e-27 134.0
45 TraesCS6B01G137900 chr5D 94.964 139 7 0 651 789 529603748 529603610 4.190000e-53 219.0
46 TraesCS6B01G137900 chr5D 94.186 86 4 1 567 652 243412312 243412396 2.020000e-26 130.0
47 TraesCS6B01G137900 chr5D 94.186 86 4 1 567 652 243456491 243456575 2.020000e-26 130.0
48 TraesCS6B01G137900 chr4D 94.964 139 7 0 651 789 344912181 344912319 4.190000e-53 219.0
49 TraesCS6B01G137900 chr4D 97.500 80 2 0 573 652 4739526 4739605 1.210000e-28 137.0
50 TraesCS6B01G137900 chr1D 94.964 139 7 0 651 789 38001380 38001242 4.190000e-53 219.0
51 TraesCS6B01G137900 chr2B 87.500 128 16 0 2373 2500 181660637 181660764 5.580000e-32 148.0
52 TraesCS6B01G137900 chr4B 97.500 80 2 0 573 652 640648289 640648368 1.210000e-28 137.0
53 TraesCS6B01G137900 chr4B 89.109 101 11 0 2261 2361 145509271 145509171 2.610000e-25 126.0
54 TraesCS6B01G137900 chr4B 89.000 100 9 2 574 672 546127857 546127955 3.380000e-24 122.0
55 TraesCS6B01G137900 chr4B 89.583 48 5 0 2138 2185 544292356 544292309 7.470000e-06 62.1
56 TraesCS6B01G137900 chr2D 88.496 113 13 0 2260 2372 484906828 484906716 1.210000e-28 137.0
57 TraesCS6B01G137900 chr2D 93.220 59 4 0 2136 2194 52224355 52224413 1.230000e-13 87.9
58 TraesCS6B01G137900 chr2D 95.745 47 2 0 2151 2197 534410642 534410596 2.670000e-10 76.8
59 TraesCS6B01G137900 chr3D 92.982 57 4 0 2138 2194 134958181 134958237 1.590000e-12 84.2
60 TraesCS6B01G137900 chr7B 92.982 57 2 2 2150 2206 180010337 180010391 5.740000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G137900 chr6B 135359127 135361628 2501 False 4621.0 4621 100.0000 1 2502 1 chr6B.!!$F2 2501
1 TraesCS6B01G137900 chr6D 61411491 61412395 904 False 610.0 1099 94.6830 483 1505 2 chr6D.!!$F3 1022
2 TraesCS6B01G137900 chr6A 78566822 78571079 4257 False 535.8 924 92.8144 1 2497 5 chr6A.!!$F4 2496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 732 0.03831 GGTGCTTGGGACTTTAGCCT 59.962 55.0 0.0 0.0 34.03 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 4068 1.337387 GGTAGCGGCTAGTAACCTCTG 59.663 57.143 10.54 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.318576 GGGTGTTCACTCAACTTGGG 58.681 55.000 2.98 0.00 35.79 4.12
33 34 1.409661 GGGTGTTCACTCAACTTGGGT 60.410 52.381 2.98 0.00 35.79 4.51
83 87 7.974501 ACTTAGAGATACATTGTTTACGGTCAG 59.025 37.037 0.00 0.00 0.00 3.51
84 88 6.282199 AGAGATACATTGTTTACGGTCAGT 57.718 37.500 0.00 0.00 0.00 3.41
111 115 6.805713 AGTGGTTTTATTGAACAGAACTTGG 58.194 36.000 0.00 0.00 0.00 3.61
115 119 8.573035 TGGTTTTATTGAACAGAACTTGGTATC 58.427 33.333 0.00 0.00 0.00 2.24
142 146 5.710513 TTCAAAGATGAACTCCACCAATG 57.289 39.130 0.00 0.00 40.59 2.82
143 147 4.984295 TCAAAGATGAACTCCACCAATGA 58.016 39.130 0.00 0.00 30.99 2.57
144 148 5.573219 TCAAAGATGAACTCCACCAATGAT 58.427 37.500 0.00 0.00 30.99 2.45
145 149 6.012113 TCAAAGATGAACTCCACCAATGATT 58.988 36.000 0.00 0.00 30.99 2.57
146 150 5.909621 AAGATGAACTCCACCAATGATTG 57.090 39.130 0.00 0.00 0.00 2.67
163 167 8.820933 CCAATGATTGCTATTATATGGTAGACG 58.179 37.037 0.00 0.00 0.00 4.18
185 189 3.641648 CGACCGGTGTTGAACTACTAAA 58.358 45.455 14.63 0.00 0.00 1.85
186 190 4.240096 CGACCGGTGTTGAACTACTAAAT 58.760 43.478 14.63 0.00 0.00 1.40
190 194 7.095691 CGACCGGTGTTGAACTACTAAATTAAA 60.096 37.037 14.63 0.00 0.00 1.52
215 219 1.437089 CTTCGTTGCAACACGCGAG 60.437 57.895 28.01 7.88 46.97 5.03
225 229 2.159761 GCAACACGCGAGCAATTAACTA 60.160 45.455 15.93 0.00 0.00 2.24
226 230 3.659735 CAACACGCGAGCAATTAACTAG 58.340 45.455 15.93 0.00 0.00 2.57
227 231 2.955614 ACACGCGAGCAATTAACTAGT 58.044 42.857 15.93 0.00 0.00 2.57
228 232 4.100707 ACACGCGAGCAATTAACTAGTA 57.899 40.909 15.93 0.00 0.00 1.82
229 233 3.855950 ACACGCGAGCAATTAACTAGTAC 59.144 43.478 15.93 0.00 0.00 2.73
230 234 4.103357 CACGCGAGCAATTAACTAGTACT 58.897 43.478 15.93 0.00 0.00 2.73
231 235 4.204573 CACGCGAGCAATTAACTAGTACTC 59.795 45.833 15.93 0.00 0.00 2.59
232 236 3.729716 CGCGAGCAATTAACTAGTACTCC 59.270 47.826 0.00 0.00 0.00 3.85
233 237 4.049869 GCGAGCAATTAACTAGTACTCCC 58.950 47.826 0.00 0.00 0.00 4.30
234 238 4.202131 GCGAGCAATTAACTAGTACTCCCT 60.202 45.833 0.00 0.00 0.00 4.20
235 239 5.521544 CGAGCAATTAACTAGTACTCCCTC 58.478 45.833 0.00 0.00 0.00 4.30
236 240 5.507650 CGAGCAATTAACTAGTACTCCCTCC 60.508 48.000 0.00 0.00 0.00 4.30
237 241 4.341520 AGCAATTAACTAGTACTCCCTCCG 59.658 45.833 0.00 0.00 0.00 4.63
238 242 4.099113 GCAATTAACTAGTACTCCCTCCGT 59.901 45.833 0.00 0.00 0.00 4.69
239 243 5.394993 GCAATTAACTAGTACTCCCTCCGTT 60.395 44.000 0.00 0.00 0.00 4.44
240 244 6.637657 CAATTAACTAGTACTCCCTCCGTTT 58.362 40.000 0.00 0.00 0.00 3.60
241 245 6.864151 ATTAACTAGTACTCCCTCCGTTTT 57.136 37.500 0.00 0.00 0.00 2.43
242 246 6.670695 TTAACTAGTACTCCCTCCGTTTTT 57.329 37.500 0.00 0.00 0.00 1.94
243 247 7.775053 TTAACTAGTACTCCCTCCGTTTTTA 57.225 36.000 0.00 0.00 0.00 1.52
244 248 6.864151 AACTAGTACTCCCTCCGTTTTTAT 57.136 37.500 0.00 0.00 0.00 1.40
245 249 6.864151 ACTAGTACTCCCTCCGTTTTTATT 57.136 37.500 0.00 0.00 0.00 1.40
246 250 7.250032 ACTAGTACTCCCTCCGTTTTTATTT 57.750 36.000 0.00 0.00 0.00 1.40
247 251 8.366359 ACTAGTACTCCCTCCGTTTTTATTTA 57.634 34.615 0.00 0.00 0.00 1.40
248 252 8.473219 ACTAGTACTCCCTCCGTTTTTATTTAG 58.527 37.037 0.00 0.00 0.00 1.85
249 253 7.250032 AGTACTCCCTCCGTTTTTATTTAGT 57.750 36.000 0.00 0.00 0.00 2.24
250 254 7.683578 AGTACTCCCTCCGTTTTTATTTAGTT 58.316 34.615 0.00 0.00 0.00 2.24
251 255 7.821359 AGTACTCCCTCCGTTTTTATTTAGTTC 59.179 37.037 0.00 0.00 0.00 3.01
252 256 5.640783 ACTCCCTCCGTTTTTATTTAGTTCG 59.359 40.000 0.00 0.00 0.00 3.95
253 257 4.392754 TCCCTCCGTTTTTATTTAGTTCGC 59.607 41.667 0.00 0.00 0.00 4.70
254 258 4.328667 CCTCCGTTTTTATTTAGTTCGCG 58.671 43.478 0.00 0.00 0.00 5.87
255 259 4.143052 CCTCCGTTTTTATTTAGTTCGCGT 60.143 41.667 5.77 0.00 0.00 6.01
256 260 5.062058 CCTCCGTTTTTATTTAGTTCGCGTA 59.938 40.000 5.77 0.00 0.00 4.42
257 261 6.237915 CCTCCGTTTTTATTTAGTTCGCGTAT 60.238 38.462 5.77 0.00 0.00 3.06
258 262 7.059448 TCCGTTTTTATTTAGTTCGCGTATT 57.941 32.000 5.77 0.00 0.00 1.89
259 263 8.179148 TCCGTTTTTATTTAGTTCGCGTATTA 57.821 30.769 5.77 0.00 0.00 0.98
260 264 8.320295 TCCGTTTTTATTTAGTTCGCGTATTAG 58.680 33.333 5.77 0.00 0.00 1.73
261 265 7.109259 CCGTTTTTATTTAGTTCGCGTATTAGC 59.891 37.037 5.77 0.00 0.00 3.09
262 266 7.842721 CGTTTTTATTTAGTTCGCGTATTAGCT 59.157 33.333 5.77 0.00 34.40 3.32
263 267 9.481800 GTTTTTATTTAGTTCGCGTATTAGCTT 57.518 29.630 5.77 0.00 34.40 3.74
265 269 9.480538 TTTTATTTAGTTCGCGTATTAGCTTTG 57.519 29.630 5.77 0.00 34.40 2.77
266 270 5.459110 TTTAGTTCGCGTATTAGCTTTGG 57.541 39.130 5.77 0.00 34.40 3.28
267 271 2.968675 AGTTCGCGTATTAGCTTTGGT 58.031 42.857 5.77 0.00 34.40 3.67
268 272 2.928116 AGTTCGCGTATTAGCTTTGGTC 59.072 45.455 5.77 0.00 34.40 4.02
269 273 2.658373 TCGCGTATTAGCTTTGGTCA 57.342 45.000 5.77 0.00 34.40 4.02
270 274 2.962125 TCGCGTATTAGCTTTGGTCAA 58.038 42.857 5.77 0.00 34.40 3.18
271 275 3.327626 TCGCGTATTAGCTTTGGTCAAA 58.672 40.909 5.77 0.00 34.40 2.69
284 288 5.890334 CTTTGGTCAAAGTCAAGCTTTACA 58.110 37.500 13.07 0.00 44.95 2.41
285 289 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
286 290 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
287 291 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
288 292 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
289 293 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
290 294 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
293 297 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
294 298 5.891451 AGTCAAGCTTTACAAACTTTGACC 58.109 37.500 13.07 0.00 0.00 4.02
295 299 5.417580 AGTCAAGCTTTACAAACTTTGACCA 59.582 36.000 13.07 0.00 0.00 4.02
296 300 6.071616 AGTCAAGCTTTACAAACTTTGACCAA 60.072 34.615 13.07 0.00 0.00 3.67
297 301 6.253512 GTCAAGCTTTACAAACTTTGACCAAG 59.746 38.462 8.55 7.77 38.64 3.61
347 351 9.926158 ATGCAATAACAAATCAACAACATTAGA 57.074 25.926 0.00 0.00 0.00 2.10
348 352 9.926158 TGCAATAACAAATCAACAACATTAGAT 57.074 25.926 0.00 0.00 0.00 1.98
464 468 9.944663 GACTTCAGTCAACTCTAATATGTAGAG 57.055 37.037 15.00 15.00 44.18 2.43
492 496 7.895975 ATAAAAACGGAAGGAGTACACTAAC 57.104 36.000 0.00 0.00 0.00 2.34
508 512 6.952773 ACACTAACAAAGGCAAGACATAAA 57.047 33.333 0.00 0.00 0.00 1.40
512 516 5.606348 AACAAAGGCAAGACATAAACCAA 57.394 34.783 0.00 0.00 0.00 3.67
516 520 4.373156 AGGCAAGACATAAACCAAGAGT 57.627 40.909 0.00 0.00 0.00 3.24
562 566 6.780706 AATAAGGAACTGATTAATACGCGG 57.219 37.500 12.47 0.00 37.86 6.46
563 567 3.107642 AGGAACTGATTAATACGCGGG 57.892 47.619 12.47 0.00 37.18 6.13
564 568 1.529865 GGAACTGATTAATACGCGGGC 59.470 52.381 12.47 0.00 0.00 6.13
566 570 2.319136 ACTGATTAATACGCGGGCAA 57.681 45.000 12.47 0.00 0.00 4.52
567 571 2.846193 ACTGATTAATACGCGGGCAAT 58.154 42.857 12.47 3.99 0.00 3.56
571 575 5.098218 TGATTAATACGCGGGCAATTAAC 57.902 39.130 12.47 13.28 30.24 2.01
573 577 5.297278 TGATTAATACGCGGGCAATTAACTT 59.703 36.000 12.47 7.71 30.24 2.66
574 578 5.564048 TTAATACGCGGGCAATTAACTTT 57.436 34.783 12.47 0.00 0.00 2.66
576 580 0.242555 ACGCGGGCAATTAACTTTGG 59.757 50.000 12.47 0.00 0.00 3.28
578 582 1.467374 CGCGGGCAATTAACTTTGGAG 60.467 52.381 0.00 0.00 0.00 3.86
579 583 1.135112 GCGGGCAATTAACTTTGGAGG 60.135 52.381 0.00 0.00 0.00 4.30
580 584 1.476488 CGGGCAATTAACTTTGGAGGG 59.524 52.381 0.00 0.00 0.00 4.30
582 586 2.233676 GGGCAATTAACTTTGGAGGGTG 59.766 50.000 0.00 0.00 0.00 4.61
583 587 2.353704 GGCAATTAACTTTGGAGGGTGC 60.354 50.000 0.00 0.00 0.00 5.01
584 588 2.562738 GCAATTAACTTTGGAGGGTGCT 59.437 45.455 0.00 0.00 0.00 4.40
586 590 4.559153 CAATTAACTTTGGAGGGTGCTTG 58.441 43.478 0.00 0.00 0.00 4.01
587 591 2.286365 TAACTTTGGAGGGTGCTTGG 57.714 50.000 0.00 0.00 0.00 3.61
588 592 0.555769 AACTTTGGAGGGTGCTTGGA 59.444 50.000 0.00 0.00 0.00 3.53
589 593 0.779997 ACTTTGGAGGGTGCTTGGAT 59.220 50.000 0.00 0.00 0.00 3.41
591 595 2.290960 ACTTTGGAGGGTGCTTGGATAC 60.291 50.000 0.00 0.00 0.00 2.24
592 596 0.251916 TTGGAGGGTGCTTGGATACG 59.748 55.000 0.00 0.00 42.51 3.06
593 597 0.907704 TGGAGGGTGCTTGGATACGT 60.908 55.000 0.00 0.00 42.51 3.57
594 598 0.252197 GGAGGGTGCTTGGATACGTT 59.748 55.000 0.00 0.00 42.51 3.99
597 601 3.602483 GAGGGTGCTTGGATACGTTTTA 58.398 45.455 0.00 0.00 42.51 1.52
598 602 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
599 603 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
601 605 4.251268 GGTGCTTGGATACGTTTTAGTCT 58.749 43.478 0.00 0.00 42.51 3.24
602 606 4.329256 GGTGCTTGGATACGTTTTAGTCTC 59.671 45.833 0.00 0.00 42.51 3.36
603 607 4.927425 GTGCTTGGATACGTTTTAGTCTCA 59.073 41.667 0.00 0.00 42.51 3.27
604 608 5.581085 GTGCTTGGATACGTTTTAGTCTCAT 59.419 40.000 0.00 0.00 42.51 2.90
605 609 5.580691 TGCTTGGATACGTTTTAGTCTCATG 59.419 40.000 0.00 0.00 42.51 3.07
607 611 6.237861 GCTTGGATACGTTTTAGTCTCATGAC 60.238 42.308 0.00 0.00 41.21 3.06
609 613 7.634671 TGGATACGTTTTAGTCTCATGACTA 57.365 36.000 0.00 2.20 46.46 2.59
622 626 6.100668 GTCTCATGACTAAAAGTAGTGGGAC 58.899 44.000 0.00 7.84 40.82 4.46
623 627 6.017192 TCTCATGACTAAAAGTAGTGGGACT 58.983 40.000 0.00 0.00 40.82 3.85
626 630 8.197592 TCATGACTAAAAGTAGTGGGACTAAA 57.802 34.615 0.00 0.00 40.82 1.85
628 632 9.449719 CATGACTAAAAGTAGTGGGACTAAAAT 57.550 33.333 0.00 0.00 40.82 1.82
632 636 8.573885 ACTAAAAGTAGTGGGACTAAAATTTGC 58.426 33.333 0.00 0.00 39.20 3.68
633 637 7.597288 AAAAGTAGTGGGACTAAAATTTGCT 57.403 32.000 0.00 0.00 31.62 3.91
634 638 8.700439 AAAAGTAGTGGGACTAAAATTTGCTA 57.300 30.769 0.00 0.00 31.62 3.49
635 639 7.923414 AAGTAGTGGGACTAAAATTTGCTAG 57.077 36.000 0.00 0.00 31.62 3.42
636 640 5.880887 AGTAGTGGGACTAAAATTTGCTAGC 59.119 40.000 8.10 8.10 31.62 3.42
637 641 4.017126 AGTGGGACTAAAATTTGCTAGCC 58.983 43.478 13.29 0.00 0.00 3.93
639 643 4.096532 GTGGGACTAAAATTTGCTAGCCTC 59.903 45.833 13.29 0.00 0.00 4.70
641 645 4.096532 GGGACTAAAATTTGCTAGCCTCAC 59.903 45.833 13.29 0.00 0.00 3.51
642 646 4.096532 GGACTAAAATTTGCTAGCCTCACC 59.903 45.833 13.29 0.00 0.00 4.02
643 647 4.017126 ACTAAAATTTGCTAGCCTCACCC 58.983 43.478 13.29 0.00 0.00 4.61
644 648 2.603075 AAATTTGCTAGCCTCACCCA 57.397 45.000 13.29 0.00 0.00 4.51
645 649 2.834638 AATTTGCTAGCCTCACCCAT 57.165 45.000 13.29 0.00 0.00 4.00
646 650 3.951563 AATTTGCTAGCCTCACCCATA 57.048 42.857 13.29 0.00 0.00 2.74
647 651 2.710096 TTTGCTAGCCTCACCCATAC 57.290 50.000 13.29 0.00 0.00 2.39
648 652 1.879575 TTGCTAGCCTCACCCATACT 58.120 50.000 13.29 0.00 0.00 2.12
649 653 1.879575 TGCTAGCCTCACCCATACTT 58.120 50.000 13.29 0.00 0.00 2.24
650 654 1.486310 TGCTAGCCTCACCCATACTTG 59.514 52.381 13.29 0.00 0.00 3.16
651 655 1.202698 GCTAGCCTCACCCATACTTGG 60.203 57.143 2.29 0.00 43.23 3.61
652 656 2.119495 CTAGCCTCACCCATACTTGGT 58.881 52.381 0.00 0.00 41.91 3.67
656 660 4.337013 CACCCATACTTGGTGCCC 57.663 61.111 0.00 0.00 46.13 5.36
657 661 1.379843 CACCCATACTTGGTGCCCC 60.380 63.158 0.00 0.00 46.13 5.80
658 662 1.543896 ACCCATACTTGGTGCCCCT 60.544 57.895 0.00 0.00 41.91 4.79
659 663 1.076777 CCCATACTTGGTGCCCCTG 60.077 63.158 0.00 0.00 41.91 4.45
660 664 1.570857 CCCATACTTGGTGCCCCTGA 61.571 60.000 0.00 0.00 41.91 3.86
661 665 0.394352 CCATACTTGGTGCCCCTGAC 60.394 60.000 0.00 0.00 38.30 3.51
662 666 0.620556 CATACTTGGTGCCCCTGACT 59.379 55.000 0.00 0.00 0.00 3.41
663 667 1.837439 CATACTTGGTGCCCCTGACTA 59.163 52.381 0.00 0.00 0.00 2.59
664 668 2.032965 TACTTGGTGCCCCTGACTAA 57.967 50.000 0.00 0.00 0.00 2.24
698 702 4.466726 TCTCAAGACTAGTTTTAGCCCCTC 59.533 45.833 0.00 0.00 0.00 4.30
699 703 4.426704 TCAAGACTAGTTTTAGCCCCTCT 58.573 43.478 0.00 0.00 0.00 3.69
700 704 4.844655 TCAAGACTAGTTTTAGCCCCTCTT 59.155 41.667 0.00 0.00 0.00 2.85
701 705 5.309806 TCAAGACTAGTTTTAGCCCCTCTTT 59.690 40.000 0.00 0.00 0.00 2.52
702 706 6.499350 TCAAGACTAGTTTTAGCCCCTCTTTA 59.501 38.462 0.00 0.00 0.00 1.85
703 707 6.947376 AGACTAGTTTTAGCCCCTCTTTAA 57.053 37.500 0.00 0.00 0.00 1.52
704 708 7.512117 AGACTAGTTTTAGCCCCTCTTTAAT 57.488 36.000 0.00 0.00 0.00 1.40
705 709 7.929959 AGACTAGTTTTAGCCCCTCTTTAATT 58.070 34.615 0.00 0.00 0.00 1.40
706 710 9.054580 AGACTAGTTTTAGCCCCTCTTTAATTA 57.945 33.333 0.00 0.00 0.00 1.40
707 711 9.327628 GACTAGTTTTAGCCCCTCTTTAATTAG 57.672 37.037 0.00 0.00 0.00 1.73
708 712 8.272889 ACTAGTTTTAGCCCCTCTTTAATTAGG 58.727 37.037 0.00 0.00 0.00 2.69
717 721 3.954258 CCTCTTTAATTAGGGGTGCTTGG 59.046 47.826 0.00 0.00 30.62 3.61
718 722 3.954258 CTCTTTAATTAGGGGTGCTTGGG 59.046 47.826 0.00 0.00 0.00 4.12
719 723 3.594232 TCTTTAATTAGGGGTGCTTGGGA 59.406 43.478 0.00 0.00 0.00 4.37
720 724 3.375647 TTAATTAGGGGTGCTTGGGAC 57.624 47.619 0.00 0.00 0.00 4.46
721 725 1.382914 AATTAGGGGTGCTTGGGACT 58.617 50.000 0.00 0.00 0.00 3.85
722 726 1.382914 ATTAGGGGTGCTTGGGACTT 58.617 50.000 0.00 0.00 0.00 3.01
723 727 1.154430 TTAGGGGTGCTTGGGACTTT 58.846 50.000 0.00 0.00 0.00 2.66
724 728 2.047769 TAGGGGTGCTTGGGACTTTA 57.952 50.000 0.00 0.00 0.00 1.85
725 729 0.698818 AGGGGTGCTTGGGACTTTAG 59.301 55.000 0.00 0.00 0.00 1.85
726 730 0.965866 GGGGTGCTTGGGACTTTAGC 60.966 60.000 0.00 0.00 35.50 3.09
727 731 0.965866 GGGTGCTTGGGACTTTAGCC 60.966 60.000 0.00 0.00 34.03 3.93
728 732 0.038310 GGTGCTTGGGACTTTAGCCT 59.962 55.000 0.00 0.00 34.03 4.58
729 733 1.454201 GTGCTTGGGACTTTAGCCTC 58.546 55.000 0.00 0.00 34.03 4.70
730 734 1.003696 GTGCTTGGGACTTTAGCCTCT 59.996 52.381 0.00 0.00 34.03 3.69
731 735 1.705186 TGCTTGGGACTTTAGCCTCTT 59.295 47.619 0.00 0.00 34.03 2.85
732 736 2.910319 TGCTTGGGACTTTAGCCTCTTA 59.090 45.455 0.00 0.00 34.03 2.10
733 737 3.329520 TGCTTGGGACTTTAGCCTCTTAA 59.670 43.478 0.00 0.00 34.03 1.85
734 738 4.202524 TGCTTGGGACTTTAGCCTCTTAAA 60.203 41.667 0.00 0.00 34.03 1.52
735 739 4.396478 GCTTGGGACTTTAGCCTCTTAAAG 59.604 45.833 4.46 4.46 43.21 1.85
736 740 5.803470 GCTTGGGACTTTAGCCTCTTAAAGA 60.803 44.000 11.30 0.00 41.17 2.52
737 741 5.422214 TGGGACTTTAGCCTCTTAAAGAG 57.578 43.478 11.30 0.56 41.17 2.85
738 742 5.091552 TGGGACTTTAGCCTCTTAAAGAGA 58.908 41.667 11.30 0.00 45.07 3.10
739 743 5.046520 TGGGACTTTAGCCTCTTAAAGAGAC 60.047 44.000 11.30 0.00 45.07 3.36
740 744 5.188163 GGGACTTTAGCCTCTTAAAGAGACT 59.812 44.000 11.30 1.37 45.07 3.24
741 745 6.380560 GGGACTTTAGCCTCTTAAAGAGACTA 59.619 42.308 11.30 0.40 45.07 2.59
742 746 7.070198 GGGACTTTAGCCTCTTAAAGAGACTAT 59.930 40.741 11.30 0.00 45.07 2.12
743 747 8.479689 GGACTTTAGCCTCTTAAAGAGACTATT 58.520 37.037 11.30 0.00 45.07 1.73
744 748 9.878667 GACTTTAGCCTCTTAAAGAGACTATTT 57.121 33.333 11.30 0.07 45.07 1.40
750 754 9.878667 AGCCTCTTAAAGAGACTATTTTTAGTC 57.121 33.333 0.00 5.24 45.07 2.59
751 755 9.654663 GCCTCTTAAAGAGACTATTTTTAGTCA 57.345 33.333 13.86 0.00 45.07 3.41
779 783 5.921962 AAATAAGTCCTTTGGATCCAAGC 57.078 39.130 25.69 16.98 37.24 4.01
780 784 2.978156 AAGTCCTTTGGATCCAAGCA 57.022 45.000 25.69 12.60 37.24 3.91
781 785 2.978156 AGTCCTTTGGATCCAAGCAA 57.022 45.000 25.69 11.87 37.24 3.91
782 786 2.519013 AGTCCTTTGGATCCAAGCAAC 58.481 47.619 25.69 22.15 37.24 4.17
783 787 1.546029 GTCCTTTGGATCCAAGCAACC 59.454 52.381 25.69 11.43 37.24 3.77
784 788 1.428912 TCCTTTGGATCCAAGCAACCT 59.571 47.619 25.69 0.00 37.24 3.50
785 789 1.821136 CCTTTGGATCCAAGCAACCTC 59.179 52.381 25.69 0.00 37.24 3.85
786 790 2.556114 CCTTTGGATCCAAGCAACCTCT 60.556 50.000 25.69 0.00 37.24 3.69
787 791 3.308402 CCTTTGGATCCAAGCAACCTCTA 60.308 47.826 25.69 8.28 37.24 2.43
788 792 4.335416 CTTTGGATCCAAGCAACCTCTAA 58.665 43.478 25.69 7.56 37.24 2.10
789 793 4.380843 TTGGATCCAAGCAACCTCTAAA 57.619 40.909 23.63 0.00 0.00 1.85
790 794 4.380843 TGGATCCAAGCAACCTCTAAAA 57.619 40.909 13.46 0.00 0.00 1.52
791 795 4.079253 TGGATCCAAGCAACCTCTAAAAC 58.921 43.478 13.46 0.00 0.00 2.43
792 796 4.079253 GGATCCAAGCAACCTCTAAAACA 58.921 43.478 6.95 0.00 0.00 2.83
793 797 4.082733 GGATCCAAGCAACCTCTAAAACAC 60.083 45.833 6.95 0.00 0.00 3.32
794 798 2.875933 TCCAAGCAACCTCTAAAACACG 59.124 45.455 0.00 0.00 0.00 4.49
795 799 2.616842 CCAAGCAACCTCTAAAACACGT 59.383 45.455 0.00 0.00 0.00 4.49
796 800 3.066203 CCAAGCAACCTCTAAAACACGTT 59.934 43.478 0.00 0.00 0.00 3.99
797 801 3.963383 AGCAACCTCTAAAACACGTTG 57.037 42.857 0.00 0.00 37.47 4.10
798 802 3.275999 AGCAACCTCTAAAACACGTTGT 58.724 40.909 0.00 0.00 36.91 3.32
867 871 4.009675 CTCCTAAAGTATTTGCCAGCACA 58.990 43.478 0.00 0.00 39.63 4.57
939 968 0.325272 TATAAACACTGGCACGCCCA 59.675 50.000 5.42 0.00 42.79 5.36
1077 1106 3.587061 TGTCTACCACCATCATTTCCTGT 59.413 43.478 0.00 0.00 0.00 4.00
1117 1146 8.889717 CGTACTCCCTATTTTCACAAATGTAAT 58.110 33.333 0.00 0.00 34.29 1.89
1271 1311 8.409358 ACTAATTGTTTATTCAGGCAAAGTCT 57.591 30.769 0.00 0.00 0.00 3.24
1300 1340 9.448438 AGGTGATTTATTTTGCGCTATATATCA 57.552 29.630 9.73 15.32 0.00 2.15
1405 1449 1.301165 GCCACCAAACTACGACGGT 60.301 57.895 0.00 0.00 0.00 4.83
1444 1488 3.119245 GCAGAACTCAGGGTTACGACATA 60.119 47.826 0.00 0.00 38.41 2.29
1512 1556 5.111989 CGTGAGGAAATAATTGAGAGCTGA 58.888 41.667 0.00 0.00 0.00 4.26
1527 1571 8.846943 TTGAGAGCTGAAAATGTTAAGTCATA 57.153 30.769 0.00 0.00 0.00 2.15
1528 1572 8.484641 TGAGAGCTGAAAATGTTAAGTCATAG 57.515 34.615 0.00 0.00 0.00 2.23
1529 1573 8.097038 TGAGAGCTGAAAATGTTAAGTCATAGT 58.903 33.333 0.00 0.00 0.00 2.12
1530 1574 8.854614 AGAGCTGAAAATGTTAAGTCATAGTT 57.145 30.769 0.00 0.00 0.00 2.24
1531 1575 9.289782 AGAGCTGAAAATGTTAAGTCATAGTTT 57.710 29.630 0.00 0.00 0.00 2.66
1532 1576 9.899226 GAGCTGAAAATGTTAAGTCATAGTTTT 57.101 29.630 0.00 0.00 0.00 2.43
1585 1629 5.539582 TTTTGGTATTACTGCTTACTGCG 57.460 39.130 0.00 0.00 46.63 5.18
1588 1632 3.193903 TGGTATTACTGCTTACTGCGTCA 59.806 43.478 0.00 0.00 46.63 4.35
1608 1652 6.202954 GCGTCAAAATATGTATTACCTCTGCT 59.797 38.462 0.00 0.00 0.00 4.24
1610 1654 7.653713 CGTCAAAATATGTATTACCTCTGCTCT 59.346 37.037 0.00 0.00 0.00 4.09
1625 1669 8.814038 ACCTCTGCTCTAAATTATTTGTCATT 57.186 30.769 0.00 0.00 0.00 2.57
1667 1711 8.082242 ACAAATGTAAAACAAGCAATCTAGGAC 58.918 33.333 0.00 0.00 0.00 3.85
1760 1804 1.403249 GGTGAAACATGCATGCAGTCC 60.403 52.381 26.69 17.40 39.98 3.85
1792 1836 7.059156 CCCATGATTTCTTTTATCCTCAGAGT 58.941 38.462 0.00 0.00 0.00 3.24
1793 1837 8.213679 CCCATGATTTCTTTTATCCTCAGAGTA 58.786 37.037 0.00 0.00 0.00 2.59
1794 1838 9.790344 CCATGATTTCTTTTATCCTCAGAGTAT 57.210 33.333 0.00 0.00 0.00 2.12
1843 1889 2.798976 TCTGTTGCCTTTTCATGCAC 57.201 45.000 0.00 0.00 37.18 4.57
1850 1896 4.870123 TGCCTTTTCATGCACAAATAGT 57.130 36.364 0.00 0.00 31.31 2.12
1851 1897 5.973899 TGCCTTTTCATGCACAAATAGTA 57.026 34.783 0.00 0.00 31.31 1.82
1852 1898 5.708948 TGCCTTTTCATGCACAAATAGTAC 58.291 37.500 0.00 0.00 31.31 2.73
1883 4068 3.062042 CCACGTACCTCTAAACCAACAC 58.938 50.000 0.00 0.00 0.00 3.32
1906 4091 1.387295 GGTTACTAGCCGCTACCCGT 61.387 60.000 0.00 0.00 34.38 5.28
1947 4132 5.163281 TCGCTGGTAGGGTTTTTGTATAA 57.837 39.130 0.00 0.00 0.00 0.98
1953 4138 7.176165 GCTGGTAGGGTTTTTGTATAACTTTCT 59.824 37.037 0.00 0.00 0.00 2.52
2114 4300 6.520272 ACTCATTACTATGGACATTCTCAGC 58.480 40.000 0.00 0.00 32.40 4.26
2116 4302 6.519382 TCATTACTATGGACATTCTCAGCAG 58.481 40.000 0.00 0.00 32.40 4.24
2136 4322 7.176515 TCAGCAGGCTAACATCAATTTTTAAGA 59.823 33.333 0.00 0.00 0.00 2.10
2170 4356 7.510685 AGGGCTCATCTAGATGTGAAATAACTA 59.489 37.037 29.95 10.17 39.72 2.24
2225 4472 1.524482 CTGACAAGGAGCTAGCCCC 59.476 63.158 12.13 9.71 0.00 5.80
2242 4489 3.418913 CCGCGCACAATTCGACCA 61.419 61.111 8.75 0.00 0.00 4.02
2243 4490 2.553770 CGCGCACAATTCGACCAA 59.446 55.556 8.75 0.00 0.00 3.67
2349 4596 1.751927 CCCATTGAGAGGCACCTGC 60.752 63.158 0.00 0.00 41.14 4.85
2403 4650 1.816835 CCTCAACGAGTGGTACTAGCA 59.183 52.381 0.00 0.00 0.00 3.49
2417 4664 5.659525 TGGTACTAGCAACTGGAGCTAATTA 59.340 40.000 0.00 0.00 43.39 1.40
2441 4688 5.726729 TCTTTATGATTAAACGCGCATCA 57.273 34.783 5.73 9.18 0.00 3.07
2461 4708 9.586150 CGCATCATGACATTATTTAAGACTTAC 57.414 33.333 0.00 0.00 0.00 2.34
2471 4718 7.989416 TTATTTAAGACTTACAGTTGTGGGG 57.011 36.000 0.00 0.00 0.00 4.96
2497 4744 7.837202 ATTCCATGTTGCATGTTATTTTCTG 57.163 32.000 8.11 0.00 0.00 3.02
2498 4745 6.343716 TCCATGTTGCATGTTATTTTCTGT 57.656 33.333 8.11 0.00 0.00 3.41
2499 4746 7.459795 TCCATGTTGCATGTTATTTTCTGTA 57.540 32.000 8.11 0.00 0.00 2.74
2500 4747 7.312154 TCCATGTTGCATGTTATTTTCTGTAC 58.688 34.615 8.11 0.00 0.00 2.90
2501 4748 6.251163 CCATGTTGCATGTTATTTTCTGTACG 59.749 38.462 8.11 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.703001 AAGTCCGGTGATCAAAGTGAT 57.297 42.857 0.00 0.00 40.34 3.06
54 55 6.417044 CCGTAAACAATGTATCTCTAAGTCCG 59.583 42.308 0.00 0.00 0.00 4.79
83 87 9.797556 AAGTTCTGTTCAATAAAACCACTTTAC 57.202 29.630 0.00 0.00 32.26 2.01
84 88 9.796120 CAAGTTCTGTTCAATAAAACCACTTTA 57.204 29.630 0.00 0.00 34.00 1.85
87 91 6.379988 ACCAAGTTCTGTTCAATAAAACCACT 59.620 34.615 0.00 0.00 0.00 4.00
141 145 6.033966 CGCGTCTACCATATAATAGCAATCA 58.966 40.000 0.00 0.00 0.00 2.57
142 146 6.196724 GTCGCGTCTACCATATAATAGCAATC 59.803 42.308 5.77 0.00 0.00 2.67
143 147 6.034591 GTCGCGTCTACCATATAATAGCAAT 58.965 40.000 5.77 0.00 0.00 3.56
144 148 5.396484 GTCGCGTCTACCATATAATAGCAA 58.604 41.667 5.77 0.00 0.00 3.91
145 149 4.142534 GGTCGCGTCTACCATATAATAGCA 60.143 45.833 5.77 0.00 36.96 3.49
146 150 4.349501 GGTCGCGTCTACCATATAATAGC 58.650 47.826 5.77 0.00 36.96 2.97
163 167 0.319297 AGTAGTTCAACACCGGTCGC 60.319 55.000 2.59 0.00 0.00 5.19
209 213 4.349501 GAGTACTAGTTAATTGCTCGCGT 58.650 43.478 5.77 0.00 0.00 6.01
215 219 4.099113 ACGGAGGGAGTACTAGTTAATTGC 59.901 45.833 0.00 0.00 0.00 3.56
225 229 7.250032 ACTAAATAAAAACGGAGGGAGTACT 57.750 36.000 0.00 0.00 0.00 2.73
226 230 7.201470 CGAACTAAATAAAAACGGAGGGAGTAC 60.201 40.741 0.00 0.00 0.00 2.73
227 231 6.813152 CGAACTAAATAAAAACGGAGGGAGTA 59.187 38.462 0.00 0.00 0.00 2.59
228 232 5.640783 CGAACTAAATAAAAACGGAGGGAGT 59.359 40.000 0.00 0.00 0.00 3.85
229 233 5.446875 GCGAACTAAATAAAAACGGAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
230 234 4.392754 GCGAACTAAATAAAAACGGAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
231 235 4.655027 GCGAACTAAATAAAAACGGAGGG 58.345 43.478 0.00 0.00 0.00 4.30
232 236 4.143052 ACGCGAACTAAATAAAAACGGAGG 60.143 41.667 15.93 0.00 0.00 4.30
233 237 4.949756 ACGCGAACTAAATAAAAACGGAG 58.050 39.130 15.93 0.00 0.00 4.63
234 238 4.988708 ACGCGAACTAAATAAAAACGGA 57.011 36.364 15.93 0.00 0.00 4.69
235 239 7.109259 GCTAATACGCGAACTAAATAAAAACGG 59.891 37.037 15.93 0.00 0.00 4.44
236 240 7.842721 AGCTAATACGCGAACTAAATAAAAACG 59.157 33.333 15.93 0.00 34.40 3.60
237 241 9.481800 AAGCTAATACGCGAACTAAATAAAAAC 57.518 29.630 15.93 0.00 34.40 2.43
239 243 9.480538 CAAAGCTAATACGCGAACTAAATAAAA 57.519 29.630 15.93 0.00 34.40 1.52
240 244 8.117988 CCAAAGCTAATACGCGAACTAAATAAA 58.882 33.333 15.93 0.00 34.40 1.40
241 245 7.278424 ACCAAAGCTAATACGCGAACTAAATAA 59.722 33.333 15.93 0.00 34.40 1.40
242 246 6.757947 ACCAAAGCTAATACGCGAACTAAATA 59.242 34.615 15.93 0.00 34.40 1.40
243 247 5.583457 ACCAAAGCTAATACGCGAACTAAAT 59.417 36.000 15.93 0.00 34.40 1.40
244 248 4.931002 ACCAAAGCTAATACGCGAACTAAA 59.069 37.500 15.93 0.00 34.40 1.85
245 249 4.497300 ACCAAAGCTAATACGCGAACTAA 58.503 39.130 15.93 0.00 34.40 2.24
246 250 4.107622 GACCAAAGCTAATACGCGAACTA 58.892 43.478 15.93 0.00 34.40 2.24
247 251 2.928116 GACCAAAGCTAATACGCGAACT 59.072 45.455 15.93 0.00 34.40 3.01
248 252 2.669434 TGACCAAAGCTAATACGCGAAC 59.331 45.455 15.93 0.00 34.40 3.95
249 253 2.962125 TGACCAAAGCTAATACGCGAA 58.038 42.857 15.93 0.00 34.40 4.70
250 254 2.658373 TGACCAAAGCTAATACGCGA 57.342 45.000 15.93 0.00 34.40 5.87
251 255 3.670203 CTTTGACCAAAGCTAATACGCG 58.330 45.455 3.53 3.53 40.94 6.01
263 267 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
264 268 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
265 269 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
321 325 9.926158 TCTAATGTTGTTGATTTGTTATTGCAT 57.074 25.926 0.00 0.00 0.00 3.96
322 326 9.926158 ATCTAATGTTGTTGATTTGTTATTGCA 57.074 25.926 0.00 0.00 0.00 4.08
438 442 9.944663 CTCTACATATTAGAGTTGACTGAAGTC 57.055 37.037 3.41 3.41 39.50 3.01
457 461 9.379791 CTCCTTCCGTTTTTATTTACTCTACAT 57.620 33.333 0.00 0.00 0.00 2.29
458 462 8.370182 ACTCCTTCCGTTTTTATTTACTCTACA 58.630 33.333 0.00 0.00 0.00 2.74
459 463 8.768957 ACTCCTTCCGTTTTTATTTACTCTAC 57.231 34.615 0.00 0.00 0.00 2.59
460 464 9.860898 GTACTCCTTCCGTTTTTATTTACTCTA 57.139 33.333 0.00 0.00 0.00 2.43
461 465 8.370182 TGTACTCCTTCCGTTTTTATTTACTCT 58.630 33.333 0.00 0.00 0.00 3.24
462 466 8.438513 GTGTACTCCTTCCGTTTTTATTTACTC 58.561 37.037 0.00 0.00 0.00 2.59
463 467 8.152898 AGTGTACTCCTTCCGTTTTTATTTACT 58.847 33.333 0.00 0.00 0.00 2.24
464 468 8.315391 AGTGTACTCCTTCCGTTTTTATTTAC 57.685 34.615 0.00 0.00 0.00 2.01
465 469 9.995003 TTAGTGTACTCCTTCCGTTTTTATTTA 57.005 29.630 0.00 0.00 0.00 1.40
466 470 8.777413 GTTAGTGTACTCCTTCCGTTTTTATTT 58.223 33.333 0.00 0.00 0.00 1.40
467 471 7.933033 TGTTAGTGTACTCCTTCCGTTTTTATT 59.067 33.333 0.00 0.00 0.00 1.40
468 472 7.444299 TGTTAGTGTACTCCTTCCGTTTTTAT 58.556 34.615 0.00 0.00 0.00 1.40
469 473 6.815089 TGTTAGTGTACTCCTTCCGTTTTTA 58.185 36.000 0.00 0.00 0.00 1.52
470 474 5.673514 TGTTAGTGTACTCCTTCCGTTTTT 58.326 37.500 0.00 0.00 0.00 1.94
471 475 5.280654 TGTTAGTGTACTCCTTCCGTTTT 57.719 39.130 0.00 0.00 0.00 2.43
472 476 4.942761 TGTTAGTGTACTCCTTCCGTTT 57.057 40.909 0.00 0.00 0.00 3.60
473 477 4.942761 TTGTTAGTGTACTCCTTCCGTT 57.057 40.909 0.00 0.00 0.00 4.44
474 478 4.262335 CCTTTGTTAGTGTACTCCTTCCGT 60.262 45.833 0.00 0.00 0.00 4.69
475 479 4.243270 CCTTTGTTAGTGTACTCCTTCCG 58.757 47.826 0.00 0.00 0.00 4.30
476 480 4.001652 GCCTTTGTTAGTGTACTCCTTCC 58.998 47.826 0.00 0.00 0.00 3.46
477 481 4.638304 TGCCTTTGTTAGTGTACTCCTTC 58.362 43.478 0.00 0.00 0.00 3.46
478 482 4.699925 TGCCTTTGTTAGTGTACTCCTT 57.300 40.909 0.00 0.00 0.00 3.36
479 483 4.347000 TCTTGCCTTTGTTAGTGTACTCCT 59.653 41.667 0.00 0.00 0.00 3.69
480 484 4.451435 GTCTTGCCTTTGTTAGTGTACTCC 59.549 45.833 0.00 0.00 0.00 3.85
481 485 5.054477 TGTCTTGCCTTTGTTAGTGTACTC 58.946 41.667 0.00 0.00 0.00 2.59
492 496 5.010012 ACTCTTGGTTTATGTCTTGCCTTTG 59.990 40.000 0.00 0.00 0.00 2.77
508 512 3.640967 GGCAGATGAGATAGACTCTTGGT 59.359 47.826 0.00 0.00 45.13 3.67
512 516 2.513753 CGGGCAGATGAGATAGACTCT 58.486 52.381 0.00 0.00 45.13 3.24
516 520 0.823769 ACGCGGGCAGATGAGATAGA 60.824 55.000 12.47 0.00 0.00 1.98
559 563 1.135112 CCTCCAAAGTTAATTGCCCGC 60.135 52.381 0.00 0.00 0.00 6.13
560 564 1.476488 CCCTCCAAAGTTAATTGCCCG 59.524 52.381 0.00 0.00 0.00 6.13
562 566 2.353704 GCACCCTCCAAAGTTAATTGCC 60.354 50.000 0.00 0.00 0.00 4.52
563 567 2.562738 AGCACCCTCCAAAGTTAATTGC 59.437 45.455 0.00 0.00 0.00 3.56
564 568 4.559153 CAAGCACCCTCCAAAGTTAATTG 58.441 43.478 0.00 0.00 0.00 2.32
566 570 3.165071 CCAAGCACCCTCCAAAGTTAAT 58.835 45.455 0.00 0.00 0.00 1.40
567 571 2.175931 TCCAAGCACCCTCCAAAGTTAA 59.824 45.455 0.00 0.00 0.00 2.01
571 575 2.369394 GTATCCAAGCACCCTCCAAAG 58.631 52.381 0.00 0.00 0.00 2.77
573 577 0.251916 CGTATCCAAGCACCCTCCAA 59.748 55.000 0.00 0.00 0.00 3.53
574 578 0.907704 ACGTATCCAAGCACCCTCCA 60.908 55.000 0.00 0.00 0.00 3.86
576 580 2.109425 AAACGTATCCAAGCACCCTC 57.891 50.000 0.00 0.00 0.00 4.30
578 582 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
579 583 4.251268 AGACTAAAACGTATCCAAGCACC 58.749 43.478 0.00 0.00 0.00 5.01
580 584 4.927425 TGAGACTAAAACGTATCCAAGCAC 59.073 41.667 0.00 0.00 0.00 4.40
582 586 5.810587 TCATGAGACTAAAACGTATCCAAGC 59.189 40.000 0.00 0.00 0.00 4.01
583 587 7.223058 GTCATGAGACTAAAACGTATCCAAG 57.777 40.000 0.00 0.00 41.64 3.61
598 602 6.071278 AGTCCCACTACTTTTAGTCATGAGAC 60.071 42.308 0.00 0.00 45.31 3.36
599 603 6.017192 AGTCCCACTACTTTTAGTCATGAGA 58.983 40.000 0.00 0.00 36.31 3.27
601 605 7.786046 TTAGTCCCACTACTTTTAGTCATGA 57.214 36.000 0.00 0.00 36.31 3.07
602 606 8.842358 TTTTAGTCCCACTACTTTTAGTCATG 57.158 34.615 0.00 0.00 36.31 3.07
604 608 9.856162 AAATTTTAGTCCCACTACTTTTAGTCA 57.144 29.630 0.00 0.00 36.31 3.41
607 611 8.793592 AGCAAATTTTAGTCCCACTACTTTTAG 58.206 33.333 0.00 0.00 28.93 1.85
608 612 8.700439 AGCAAATTTTAGTCCCACTACTTTTA 57.300 30.769 0.00 0.00 28.93 1.52
609 613 7.597288 AGCAAATTTTAGTCCCACTACTTTT 57.403 32.000 0.00 0.00 28.93 2.27
611 615 6.374613 GCTAGCAAATTTTAGTCCCACTACTT 59.625 38.462 10.63 0.00 28.93 2.24
613 617 5.066117 GGCTAGCAAATTTTAGTCCCACTAC 59.934 44.000 18.24 0.00 28.93 2.73
614 618 5.045140 AGGCTAGCAAATTTTAGTCCCACTA 60.045 40.000 18.24 0.00 0.00 2.74
615 619 4.017126 GGCTAGCAAATTTTAGTCCCACT 58.983 43.478 18.24 0.00 0.00 4.00
616 620 4.017126 AGGCTAGCAAATTTTAGTCCCAC 58.983 43.478 18.24 0.00 0.00 4.61
617 621 4.263727 TGAGGCTAGCAAATTTTAGTCCCA 60.264 41.667 18.24 0.00 0.00 4.37
618 622 4.096532 GTGAGGCTAGCAAATTTTAGTCCC 59.903 45.833 18.24 0.00 0.00 4.46
622 626 4.016444 TGGGTGAGGCTAGCAAATTTTAG 58.984 43.478 18.24 0.00 0.00 1.85
623 627 4.040936 TGGGTGAGGCTAGCAAATTTTA 57.959 40.909 18.24 0.00 0.00 1.52
626 630 2.834638 ATGGGTGAGGCTAGCAAATT 57.165 45.000 18.24 0.00 0.00 1.82
628 632 2.196595 AGTATGGGTGAGGCTAGCAAA 58.803 47.619 18.24 0.00 0.00 3.68
629 633 1.879575 AGTATGGGTGAGGCTAGCAA 58.120 50.000 18.24 0.00 0.00 3.91
632 636 2.918712 CCAAGTATGGGTGAGGCTAG 57.081 55.000 0.00 0.00 43.51 3.42
674 678 4.223255 AGGGGCTAAAACTAGTCTTGAGAC 59.777 45.833 0.00 2.93 45.08 3.36
678 682 4.828072 AGAGGGGCTAAAACTAGTCTTG 57.172 45.455 0.00 0.00 0.00 3.02
682 686 8.272889 CCTAATTAAAGAGGGGCTAAAACTAGT 58.727 37.037 0.00 0.00 0.00 2.57
683 687 8.678593 CCTAATTAAAGAGGGGCTAAAACTAG 57.321 38.462 0.00 0.00 0.00 2.57
695 699 3.954258 CCAAGCACCCCTAATTAAAGAGG 59.046 47.826 0.00 0.00 0.00 3.69
698 702 3.699538 GTCCCAAGCACCCCTAATTAAAG 59.300 47.826 0.00 0.00 0.00 1.85
699 703 3.335484 AGTCCCAAGCACCCCTAATTAAA 59.665 43.478 0.00 0.00 0.00 1.52
700 704 2.923629 AGTCCCAAGCACCCCTAATTAA 59.076 45.455 0.00 0.00 0.00 1.40
701 705 2.568979 AGTCCCAAGCACCCCTAATTA 58.431 47.619 0.00 0.00 0.00 1.40
702 706 1.382914 AGTCCCAAGCACCCCTAATT 58.617 50.000 0.00 0.00 0.00 1.40
703 707 1.382914 AAGTCCCAAGCACCCCTAAT 58.617 50.000 0.00 0.00 0.00 1.73
704 708 1.154430 AAAGTCCCAAGCACCCCTAA 58.846 50.000 0.00 0.00 0.00 2.69
705 709 1.913419 CTAAAGTCCCAAGCACCCCTA 59.087 52.381 0.00 0.00 0.00 3.53
706 710 0.698818 CTAAAGTCCCAAGCACCCCT 59.301 55.000 0.00 0.00 0.00 4.79
707 711 0.965866 GCTAAAGTCCCAAGCACCCC 60.966 60.000 0.00 0.00 36.26 4.95
708 712 0.965866 GGCTAAAGTCCCAAGCACCC 60.966 60.000 0.00 0.00 38.01 4.61
709 713 0.038310 AGGCTAAAGTCCCAAGCACC 59.962 55.000 0.00 0.00 38.01 5.01
710 714 1.003696 AGAGGCTAAAGTCCCAAGCAC 59.996 52.381 0.00 0.00 38.01 4.40
711 715 1.362224 AGAGGCTAAAGTCCCAAGCA 58.638 50.000 0.00 0.00 38.01 3.91
712 716 2.498644 AAGAGGCTAAAGTCCCAAGC 57.501 50.000 0.00 0.00 35.47 4.01
713 717 5.805728 TCTTTAAGAGGCTAAAGTCCCAAG 58.194 41.667 7.84 0.00 39.12 3.61
714 718 5.546499 TCTCTTTAAGAGGCTAAAGTCCCAA 59.454 40.000 20.29 0.00 42.54 4.12
715 719 5.046520 GTCTCTTTAAGAGGCTAAAGTCCCA 60.047 44.000 18.21 0.00 43.38 4.37
716 720 5.421277 GTCTCTTTAAGAGGCTAAAGTCCC 58.579 45.833 18.21 0.00 43.38 4.46
725 729 9.654663 TGACTAAAAATAGTCTCTTTAAGAGGC 57.345 33.333 17.87 17.87 46.94 4.70
753 757 8.478066 GCTTGGATCCAAAGGACTTATTTTAAT 58.522 33.333 26.87 0.00 32.98 1.40
754 758 7.453126 TGCTTGGATCCAAAGGACTTATTTTAA 59.547 33.333 26.87 0.01 32.98 1.52
755 759 6.951198 TGCTTGGATCCAAAGGACTTATTTTA 59.049 34.615 26.87 0.69 32.98 1.52
756 760 5.779771 TGCTTGGATCCAAAGGACTTATTTT 59.220 36.000 26.87 0.00 32.98 1.82
757 761 5.332743 TGCTTGGATCCAAAGGACTTATTT 58.667 37.500 26.87 0.00 32.98 1.40
758 762 4.934356 TGCTTGGATCCAAAGGACTTATT 58.066 39.130 26.87 0.00 32.98 1.40
759 763 4.591321 TGCTTGGATCCAAAGGACTTAT 57.409 40.909 26.87 0.00 32.98 1.73
760 764 4.079253 GTTGCTTGGATCCAAAGGACTTA 58.921 43.478 26.87 3.43 32.98 2.24
761 765 2.893489 GTTGCTTGGATCCAAAGGACTT 59.107 45.455 26.87 0.00 32.98 3.01
762 766 2.519013 GTTGCTTGGATCCAAAGGACT 58.481 47.619 26.87 0.00 32.98 3.85
763 767 1.546029 GGTTGCTTGGATCCAAAGGAC 59.454 52.381 26.87 21.98 32.98 3.85
764 768 1.428912 AGGTTGCTTGGATCCAAAGGA 59.571 47.619 26.87 18.60 35.33 3.36
765 769 1.821136 GAGGTTGCTTGGATCCAAAGG 59.179 52.381 26.87 17.58 35.33 3.11
766 770 2.800250 AGAGGTTGCTTGGATCCAAAG 58.200 47.619 26.87 20.47 35.33 2.77
767 771 2.978156 AGAGGTTGCTTGGATCCAAA 57.022 45.000 26.87 11.64 35.33 3.28
768 772 4.380843 TTTAGAGGTTGCTTGGATCCAA 57.619 40.909 25.53 25.53 0.00 3.53
769 773 4.079253 GTTTTAGAGGTTGCTTGGATCCA 58.921 43.478 11.44 11.44 0.00 3.41
770 774 4.079253 TGTTTTAGAGGTTGCTTGGATCC 58.921 43.478 4.20 4.20 0.00 3.36
771 775 4.378459 CGTGTTTTAGAGGTTGCTTGGATC 60.378 45.833 0.00 0.00 0.00 3.36
772 776 3.502211 CGTGTTTTAGAGGTTGCTTGGAT 59.498 43.478 0.00 0.00 0.00 3.41
773 777 2.875933 CGTGTTTTAGAGGTTGCTTGGA 59.124 45.455 0.00 0.00 0.00 3.53
774 778 2.616842 ACGTGTTTTAGAGGTTGCTTGG 59.383 45.455 0.00 0.00 0.00 3.61
775 779 3.963383 ACGTGTTTTAGAGGTTGCTTG 57.037 42.857 0.00 0.00 0.00 4.01
776 780 3.692593 ACAACGTGTTTTAGAGGTTGCTT 59.307 39.130 8.65 0.00 40.98 3.91
777 781 3.275999 ACAACGTGTTTTAGAGGTTGCT 58.724 40.909 8.65 0.00 40.98 3.91
778 782 3.685836 ACAACGTGTTTTAGAGGTTGC 57.314 42.857 8.65 0.00 40.98 4.17
779 783 6.037391 TCCTTAACAACGTGTTTTAGAGGTTG 59.963 38.462 8.33 7.55 41.45 3.77
780 784 6.114767 TCCTTAACAACGTGTTTTAGAGGTT 58.885 36.000 8.33 0.00 41.45 3.50
781 785 5.673514 TCCTTAACAACGTGTTTTAGAGGT 58.326 37.500 8.33 0.00 41.45 3.85
782 786 6.607735 TTCCTTAACAACGTGTTTTAGAGG 57.392 37.500 8.33 10.24 41.45 3.69
783 787 7.011669 TCCTTTCCTTAACAACGTGTTTTAGAG 59.988 37.037 8.33 3.84 41.45 2.43
784 788 6.822676 TCCTTTCCTTAACAACGTGTTTTAGA 59.177 34.615 8.33 2.22 41.45 2.10
785 789 7.018635 TCCTTTCCTTAACAACGTGTTTTAG 57.981 36.000 8.33 7.01 41.45 1.85
786 790 6.998968 TCCTTTCCTTAACAACGTGTTTTA 57.001 33.333 8.33 0.00 41.45 1.52
787 791 5.900865 TCCTTTCCTTAACAACGTGTTTT 57.099 34.783 8.33 0.00 41.45 2.43
788 792 7.571080 TTATCCTTTCCTTAACAACGTGTTT 57.429 32.000 8.33 0.00 41.45 2.83
789 793 7.571080 TTTATCCTTTCCTTAACAACGTGTT 57.429 32.000 8.15 8.15 43.88 3.32
790 794 7.754851 ATTTATCCTTTCCTTAACAACGTGT 57.245 32.000 0.00 0.00 0.00 4.49
791 795 8.723311 TGTATTTATCCTTTCCTTAACAACGTG 58.277 33.333 0.00 0.00 0.00 4.49
792 796 8.851541 TGTATTTATCCTTTCCTTAACAACGT 57.148 30.769 0.00 0.00 0.00 3.99
793 797 9.716507 CATGTATTTATCCTTTCCTTAACAACG 57.283 33.333 0.00 0.00 0.00 4.10
845 849 4.009675 TGTGCTGGCAAATACTTTAGGAG 58.990 43.478 0.00 0.00 0.00 3.69
846 850 4.027674 TGTGCTGGCAAATACTTTAGGA 57.972 40.909 0.00 0.00 0.00 2.94
847 851 4.989279 ATGTGCTGGCAAATACTTTAGG 57.011 40.909 0.00 0.00 0.00 2.69
939 968 1.082117 GCGACGATGTCACCGGAATT 61.082 55.000 9.46 0.00 32.09 2.17
1077 1106 1.134367 GAGTACGTACCTGCTGCATGA 59.866 52.381 21.80 0.00 0.00 3.07
1151 1188 9.275398 ACTGTGTTTATTCACTTATTTCGGTTA 57.725 29.630 0.00 0.00 38.90 2.85
1271 1311 3.088532 AGCGCAAAATAAATCACCTGGA 58.911 40.909 11.47 0.00 0.00 3.86
1300 1340 4.816385 CGACCCAGTCAGCACATAATATTT 59.184 41.667 0.00 0.00 32.09 1.40
1302 1342 3.388024 ACGACCCAGTCAGCACATAATAT 59.612 43.478 0.00 0.00 32.09 1.28
1405 1449 1.334556 CTGCAGTAAAGCTTGCACACA 59.665 47.619 5.25 6.81 33.42 3.72
1534 1578 9.522804 ACTATGACTTAACATTTTTCGCAAAAA 57.477 25.926 0.00 2.93 43.76 1.94
1535 1579 9.522804 AACTATGACTTAACATTTTTCGCAAAA 57.477 25.926 0.00 0.00 36.30 2.44
1536 1580 9.522804 AAACTATGACTTAACATTTTTCGCAAA 57.477 25.926 0.00 0.00 0.00 3.68
1537 1581 9.522804 AAAACTATGACTTAACATTTTTCGCAA 57.477 25.926 0.00 0.00 0.00 4.85
1538 1582 9.522804 AAAAACTATGACTTAACATTTTTCGCA 57.477 25.926 0.00 0.00 0.00 5.10
1585 1629 8.894768 AGAGCAGAGGTAATACATATTTTGAC 57.105 34.615 0.00 0.00 0.00 3.18
1647 1691 4.933400 TCCGTCCTAGATTGCTTGTTTTAC 59.067 41.667 0.00 0.00 0.00 2.01
1661 1705 2.437281 TGTAGTACTCCCTCCGTCCTAG 59.563 54.545 0.00 0.00 0.00 3.02
1667 1711 4.022242 CCACATATTGTAGTACTCCCTCCG 60.022 50.000 0.00 0.00 0.00 4.63
1760 1804 6.238484 GGATAAAAGAAATCATGGGAGTGACG 60.238 42.308 0.00 0.00 0.00 4.35
1843 1889 7.559590 ACGTGGTAGGTAGTAGTACTATTTG 57.440 40.000 13.09 1.79 32.65 2.32
1850 1896 4.962995 AGAGGTACGTGGTAGGTAGTAGTA 59.037 45.833 0.00 0.00 0.00 1.82
1851 1897 3.777522 AGAGGTACGTGGTAGGTAGTAGT 59.222 47.826 0.00 0.00 0.00 2.73
1852 1898 4.414337 AGAGGTACGTGGTAGGTAGTAG 57.586 50.000 0.00 0.00 0.00 2.57
1883 4068 1.337387 GGTAGCGGCTAGTAACCTCTG 59.663 57.143 10.54 0.00 0.00 3.35
2052 4237 6.424207 ACTCTTTCTACTTTTAGCAAGTTCCG 59.576 38.462 0.00 0.00 32.22 4.30
2114 4300 9.079833 CACATCTTAAAAATTGATGTTAGCCTG 57.920 33.333 5.79 0.00 45.62 4.85
2116 4302 8.986477 ACACATCTTAAAAATTGATGTTAGCC 57.014 30.769 5.79 0.00 45.62 3.93
2136 4322 5.367937 ACATCTAGATGAGCCCTAAACACAT 59.632 40.000 34.16 8.13 41.20 3.21
2142 4328 6.753913 ATTTCACATCTAGATGAGCCCTAA 57.246 37.500 34.16 19.04 41.20 2.69
2145 4331 6.529220 AGTTATTTCACATCTAGATGAGCCC 58.471 40.000 34.16 15.12 41.20 5.19
2147 4333 9.703892 ACATAGTTATTTCACATCTAGATGAGC 57.296 33.333 34.16 15.61 41.20 4.26
2208 4394 1.995626 GGGGGCTAGCTCCTTGTCA 60.996 63.158 32.42 0.00 36.64 3.58
2225 4472 2.960512 TTGGTCGAATTGTGCGCGG 61.961 57.895 8.83 0.00 0.00 6.46
2242 4489 3.228453 TCCCTACAAGACTTGTCTCGTT 58.772 45.455 23.79 1.57 44.12 3.85
2243 4490 2.820787 CTCCCTACAAGACTTGTCTCGT 59.179 50.000 23.79 2.31 44.12 4.18
2310 4557 2.897350 GCCCAGTCGCATGGCTAC 60.897 66.667 0.00 0.00 42.01 3.58
2311 4558 4.175337 GGCCCAGTCGCATGGCTA 62.175 66.667 0.00 0.00 44.71 3.93
2346 4593 1.597195 TGCTGTAAACACAGTTCGCAG 59.403 47.619 6.64 2.75 39.76 5.18
2347 4594 1.597195 CTGCTGTAAACACAGTTCGCA 59.403 47.619 6.64 0.00 39.76 5.10
2349 4596 5.233476 TCTTTACTGCTGTAAACACAGTTCG 59.767 40.000 20.98 11.40 41.78 3.95
2373 4620 2.167281 CACTCGTTGAGGAGATGGATGT 59.833 50.000 7.62 0.00 37.49 3.06
2375 4622 1.759445 CCACTCGTTGAGGAGATGGAT 59.241 52.381 7.62 0.00 37.38 3.41
2417 4664 6.724263 TGATGCGCGTTTAATCATAAAGAAT 58.276 32.000 8.43 0.00 31.81 2.40
2434 4681 6.662616 AGTCTTAAATAATGTCATGATGCGC 58.337 36.000 0.00 0.00 0.00 6.09
2461 4708 3.085952 ACATGGAATACCCCACAACTG 57.914 47.619 0.00 0.00 39.34 3.16
2471 4718 8.810427 CAGAAAATAACATGCAACATGGAATAC 58.190 33.333 11.91 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.