Multiple sequence alignment - TraesCS6B01G136700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G136700 chr6B 100.000 2745 0 0 1 2745 134466953 134469697 0.000000e+00 5070.0
1 TraesCS6B01G136700 chr6B 95.455 110 5 0 2452 2561 23660243 23660352 2.810000e-40 176.0
2 TraesCS6B01G136700 chr6A 89.952 1463 87 26 769 2186 76975986 76977433 0.000000e+00 1832.0
3 TraesCS6B01G136700 chr6A 78.462 195 37 2 51 240 27250274 27250080 3.710000e-24 122.0
4 TraesCS6B01G136700 chr6D 90.754 1406 81 18 778 2149 60383268 60384658 0.000000e+00 1831.0
5 TraesCS6B01G136700 chr6D 84.242 495 46 16 316 779 60382443 60382936 1.160000e-123 453.0
6 TraesCS6B01G136700 chr6D 91.536 319 22 2 1 314 60382048 60382366 4.200000e-118 435.0
7 TraesCS6B01G136700 chr6D 84.797 296 21 6 1903 2186 60500986 60500703 2.690000e-70 276.0
8 TraesCS6B01G136700 chr6D 91.228 171 13 1 2185 2355 60499136 60498968 5.910000e-57 231.0
9 TraesCS6B01G136700 chr5B 96.429 112 4 0 2454 2565 696957238 696957127 4.670000e-43 185.0
10 TraesCS6B01G136700 chr4A 91.304 138 4 3 2425 2562 706553024 706552895 6.040000e-42 182.0
11 TraesCS6B01G136700 chr4A 92.308 39 3 0 1 39 676812603 676812641 3.820000e-04 56.5
12 TraesCS6B01G136700 chr3B 96.364 110 4 0 2457 2566 214030719 214030610 6.040000e-42 182.0
13 TraesCS6B01G136700 chr4B 95.455 110 5 0 2455 2564 59864906 59864797 2.810000e-40 176.0
14 TraesCS6B01G136700 chr2B 96.262 107 4 0 2457 2563 568277544 568277650 2.810000e-40 176.0
15 TraesCS6B01G136700 chr1B 96.262 107 4 0 2457 2563 12257578 12257472 2.810000e-40 176.0
16 TraesCS6B01G136700 chr7A 96.226 106 4 0 2456 2561 194051359 194051254 1.010000e-39 174.0
17 TraesCS6B01G136700 chr2A 89.130 138 13 2 2425 2562 16064302 16064437 1.310000e-38 171.0
18 TraesCS6B01G136700 chr2A 96.774 31 1 0 1 31 753093943 753093913 5.000000e-03 52.8
19 TraesCS6B01G136700 chr4D 96.970 33 1 0 1 33 138260148 138260180 3.820000e-04 56.5
20 TraesCS6B01G136700 chr5D 100.000 28 0 0 1 28 407860037 407860064 5.000000e-03 52.8
21 TraesCS6B01G136700 chr1D 96.774 31 1 0 1 31 491086929 491086899 5.000000e-03 52.8
22 TraesCS6B01G136700 chr1A 96.774 31 1 0 1 31 415299462 415299432 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G136700 chr6B 134466953 134469697 2744 False 5070.000000 5070 100.0000 1 2745 1 chr6B.!!$F2 2744
1 TraesCS6B01G136700 chr6A 76975986 76977433 1447 False 1832.000000 1832 89.9520 769 2186 1 chr6A.!!$F1 1417
2 TraesCS6B01G136700 chr6D 60382048 60384658 2610 False 906.333333 1831 88.8440 1 2149 3 chr6D.!!$F1 2148
3 TraesCS6B01G136700 chr6D 60498968 60500986 2018 True 253.500000 276 88.0125 1903 2355 2 chr6D.!!$R1 452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 640 0.03601 AGGACGGTCAGCAGAAATGG 60.036 55.0 10.76 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2501 4587 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.0 6.98 0.0 45.29 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.890581 TCTAGATGAGCCCTAGACAAACTC 59.109 45.833 0.00 0.00 38.08 3.01
75 76 5.094387 AGGTTTGGAGAAGACTAGGATTGA 58.906 41.667 0.00 0.00 0.00 2.57
122 123 2.446848 CGATCATGGGGGTGAGGCT 61.447 63.158 0.00 0.00 0.00 4.58
125 126 1.217057 ATCATGGGGGTGAGGCTGTT 61.217 55.000 0.00 0.00 0.00 3.16
145 146 7.224949 GGCTGTTCTGGAATTCTTACTACATAC 59.775 40.741 5.23 0.00 0.00 2.39
158 159 4.576216 ACTACATACGCCAGATCAAGAG 57.424 45.455 0.00 0.00 0.00 2.85
159 160 2.231215 ACATACGCCAGATCAAGAGC 57.769 50.000 0.00 0.00 0.00 4.09
181 187 3.746045 TTATGGGGTCTCAGAATACGC 57.254 47.619 0.00 0.00 0.00 4.42
225 231 6.350949 CCATTTGGTATTTGTGGTAGGAAAGG 60.351 42.308 0.00 0.00 0.00 3.11
235 241 4.040217 TGTGGTAGGAAAGGCGTAAACTAA 59.960 41.667 0.00 0.00 0.00 2.24
236 242 5.181009 GTGGTAGGAAAGGCGTAAACTAAT 58.819 41.667 0.00 0.00 0.00 1.73
240 246 4.270008 AGGAAAGGCGTAAACTAATGCAT 58.730 39.130 0.00 0.00 32.80 3.96
257 263 8.689972 ACTAATGCATAAGGAGAAAATTCAAGG 58.310 33.333 0.00 0.00 0.00 3.61
258 264 7.486407 AATGCATAAGGAGAAAATTCAAGGT 57.514 32.000 0.00 0.00 0.00 3.50
290 296 6.538263 AGATTTCTATGGGGATACAAAGCTC 58.462 40.000 0.00 0.00 39.74 4.09
297 303 3.516300 TGGGGATACAAAGCTCTTACGAA 59.484 43.478 0.00 0.00 39.74 3.85
314 320 7.837505 TCTTACGAATAATTACATCGTTGCTG 58.162 34.615 24.58 15.61 46.66 4.41
316 322 4.570772 ACGAATAATTACATCGTTGCTGCT 59.429 37.500 17.73 0.19 46.66 4.24
376 459 4.737855 TCCTCAGGGACGATAAAGAAAG 57.262 45.455 0.00 0.00 36.57 2.62
382 465 6.106673 TCAGGGACGATAAAGAAAGATTCAC 58.893 40.000 0.00 0.00 0.00 3.18
388 471 6.166279 ACGATAAAGAAAGATTCACTGCAGA 58.834 36.000 23.35 0.00 0.00 4.26
418 502 2.350522 GAGAATTGACTGTGTGCGGAT 58.649 47.619 0.00 0.00 0.00 4.18
423 507 0.602638 TGACTGTGTGCGGATGTTCC 60.603 55.000 0.00 0.00 0.00 3.62
426 510 0.677731 CTGTGTGCGGATGTTCCCAT 60.678 55.000 0.00 0.00 31.13 4.00
455 539 7.051000 GGAAGATCTAGCACTTAGATTTGGTT 58.949 38.462 0.00 0.00 46.72 3.67
472 556 4.009370 TGGTTTATCCATGACACAACGA 57.991 40.909 0.00 0.00 41.93 3.85
476 560 1.019278 ATCCATGACACAACGACGGC 61.019 55.000 0.00 0.00 0.00 5.68
484 568 0.794229 CACAACGACGGCATGCAATC 60.794 55.000 21.36 14.79 0.00 2.67
509 600 8.210946 TCGACTTATCATGATAATTTGGAGGTT 58.789 33.333 24.77 6.17 33.29 3.50
522 613 5.623956 TTTGGAGGTTATCGATACCATGT 57.376 39.130 19.59 5.77 38.16 3.21
539 630 4.407621 ACCATGTATAATGAAGGACGGTCA 59.592 41.667 10.76 0.00 0.00 4.02
544 635 0.976641 AATGAAGGACGGTCAGCAGA 59.023 50.000 10.76 0.00 0.00 4.26
549 640 0.036010 AGGACGGTCAGCAGAAATGG 60.036 55.000 10.76 0.00 0.00 3.16
553 644 2.486966 GTCAGCAGAAATGGCGGC 59.513 61.111 0.00 0.00 36.08 6.53
564 655 3.572196 ATGGCGGCGGCAGTTTTTG 62.572 57.895 37.95 0.00 42.43 2.44
578 669 8.392612 GCGGCAGTTTTTGATTATTACTACTTA 58.607 33.333 0.00 0.00 0.00 2.24
650 741 9.548208 GAAGCAAATAAAGTTGTCTATGAGTTC 57.452 33.333 0.00 0.00 0.00 3.01
654 745 7.527084 AATAAAGTTGTCTATGAGTTCGCTC 57.473 36.000 0.00 0.00 44.33 5.03
656 747 2.488545 AGTTGTCTATGAGTTCGCTCGT 59.511 45.455 0.00 0.00 46.95 4.18
657 748 2.544480 TGTCTATGAGTTCGCTCGTG 57.456 50.000 0.09 0.00 46.95 4.35
659 750 3.004862 TGTCTATGAGTTCGCTCGTGTA 58.995 45.455 0.09 0.00 46.95 2.90
660 751 3.626217 TGTCTATGAGTTCGCTCGTGTAT 59.374 43.478 0.09 0.00 46.95 2.29
665 772 1.578023 GAGTTCGCTCGTGTATCGTTG 59.422 52.381 0.00 0.00 40.80 4.10
670 777 1.255342 CGCTCGTGTATCGTTGATTGG 59.745 52.381 0.00 0.00 40.80 3.16
680 787 2.778299 TCGTTGATTGGTTTGAGGAGG 58.222 47.619 0.00 0.00 0.00 4.30
681 788 1.812571 CGTTGATTGGTTTGAGGAGGG 59.187 52.381 0.00 0.00 0.00 4.30
690 797 3.913799 TGGTTTGAGGAGGGTCTAAATGA 59.086 43.478 0.00 0.00 0.00 2.57
703 810 8.664669 AGGGTCTAAATGAAATTGTACCATTT 57.335 30.769 4.67 4.67 41.60 2.32
705 812 8.527810 GGGTCTAAATGAAATTGTACCATTTCA 58.472 33.333 27.70 27.70 46.63 2.69
706 813 9.921637 GGTCTAAATGAAATTGTACCATTTCAA 57.078 29.630 28.67 17.10 45.99 2.69
809 1254 6.753107 ATTTACTACTTTTTCGATGTGGGG 57.247 37.500 0.00 0.00 0.00 4.96
813 1258 3.782656 ACTTTTTCGATGTGGGGTAGT 57.217 42.857 0.00 0.00 0.00 2.73
822 1267 0.251121 TGTGGGGTAGTGCAACCATG 60.251 55.000 9.74 0.00 41.67 3.66
849 1294 9.071221 CGCAACTAATATAGCAAATGAAAAACA 57.929 29.630 0.00 0.00 0.00 2.83
882 1329 1.781786 AGAAGAGATAGGAGGCGCAA 58.218 50.000 10.83 0.00 0.00 4.85
944 1395 1.754621 CAGCTCTAGCCCAGACCGA 60.755 63.158 0.00 0.00 43.38 4.69
1418 1872 0.464452 AAAGGGACCCATCGATCGAC 59.536 55.000 22.06 7.07 0.00 4.20
1500 1963 2.600420 GCTGTATGTGACTGACGACATG 59.400 50.000 0.00 0.00 34.60 3.21
1515 1981 3.938963 ACGACATGTGTATTGTTGGATCC 59.061 43.478 1.15 4.20 33.54 3.36
1519 1985 6.404623 CGACATGTGTATTGTTGGATCCAATT 60.405 38.462 29.37 18.91 38.28 2.32
1523 1989 4.864247 GTGTATTGTTGGATCCAATTGCAC 59.136 41.667 29.37 26.89 38.28 4.57
1556 2022 0.534203 TCGTGGTGTTCAAGGAAGGC 60.534 55.000 0.00 0.00 0.00 4.35
1583 2049 2.995939 CAGTCGACAGTACTGGTACGTA 59.004 50.000 26.12 14.41 40.56 3.57
1584 2050 2.996621 AGTCGACAGTACTGGTACGTAC 59.003 50.000 26.12 17.56 40.80 3.67
1585 2051 2.094417 GTCGACAGTACTGGTACGTACC 59.906 54.545 33.42 33.42 46.62 3.34
1586 2052 2.028112 TCGACAGTACTGGTACGTACCT 60.028 50.000 37.37 24.73 46.58 3.08
1587 2053 3.194755 TCGACAGTACTGGTACGTACCTA 59.805 47.826 37.37 23.75 46.58 3.08
1588 2054 3.932710 CGACAGTACTGGTACGTACCTAA 59.067 47.826 37.37 22.22 46.58 2.69
1589 2055 4.201724 CGACAGTACTGGTACGTACCTAAC 60.202 50.000 37.37 30.33 46.58 2.34
1590 2056 3.684788 ACAGTACTGGTACGTACCTAACG 59.315 47.826 37.37 26.98 46.58 3.18
1666 2160 0.319900 TTCTGCGTGAGGCTCTGAAC 60.320 55.000 16.72 4.69 44.05 3.18
1673 2167 2.160417 CGTGAGGCTCTGAACAATTTCC 59.840 50.000 16.72 0.00 0.00 3.13
1758 2257 1.525197 GCAATGAAATGATGCATGGCG 59.475 47.619 2.46 0.00 39.81 5.69
1824 2323 7.970102 TCCAACTCCACCTTACCAATATATAC 58.030 38.462 0.00 0.00 0.00 1.47
1943 2447 7.121315 GCAATTTTAGGTGTCTCAGAGGTTTAT 59.879 37.037 0.00 0.00 0.00 1.40
2021 2525 0.466124 CCTGGCTACCTAGGTGCTTC 59.534 60.000 25.33 13.42 0.00 3.86
2030 2546 6.404403 GGCTACCTAGGTGCTTCAAATTTTAC 60.404 42.308 25.33 5.18 0.00 2.01
2032 2548 5.641155 ACCTAGGTGCTTCAAATTTTACCT 58.359 37.500 15.42 5.97 41.17 3.08
2053 2569 9.575868 TTACCTTTTTGACAGTGTTATATTCCA 57.424 29.630 0.00 0.00 0.00 3.53
2074 2590 7.033530 TCCATTTTGTTTGTAGACGTTGATT 57.966 32.000 0.00 0.00 0.00 2.57
2075 2591 6.915300 TCCATTTTGTTTGTAGACGTTGATTG 59.085 34.615 0.00 0.00 0.00 2.67
2078 2594 7.728580 TTTTGTTTGTAGACGTTGATTGAAC 57.271 32.000 0.00 0.00 0.00 3.18
2079 2595 6.424176 TTGTTTGTAGACGTTGATTGAACA 57.576 33.333 0.00 0.00 33.73 3.18
2238 4324 5.278463 CCCACCAAGATTTAACAGTGTTGAG 60.278 44.000 18.90 0.13 0.00 3.02
2260 4346 0.394899 CATGCCAAGAGGAAGGGTCC 60.395 60.000 0.00 0.00 45.35 4.46
2275 4361 0.402121 GGTCCATATGGAGGGAAGGC 59.598 60.000 25.17 10.93 46.49 4.35
2305 4391 7.571059 GCCAATATTTTGTCATGTTCCAAACAC 60.571 37.037 7.22 0.00 45.50 3.32
2308 4394 5.651387 TTTTGTCATGTTCCAAACACTGA 57.349 34.783 7.22 0.00 45.50 3.41
2315 4401 1.781025 TTCCAAACACTGAAGGCGCG 61.781 55.000 0.00 0.00 0.00 6.86
2318 4404 0.657368 CAAACACTGAAGGCGCGAAC 60.657 55.000 12.10 0.36 0.00 3.95
2326 4412 2.855728 GAAGGCGCGAACCAGCATTG 62.856 60.000 12.10 0.00 37.50 2.82
2328 4414 4.403137 GCGCGAACCAGCATTGCA 62.403 61.111 12.10 0.00 36.85 4.08
2340 4426 4.406326 ACCAGCATTGCAAAATGATATGGA 59.594 37.500 18.55 0.00 35.34 3.41
2342 4428 5.452776 CCAGCATTGCAAAATGATATGGAGT 60.453 40.000 11.91 0.00 34.49 3.85
2355 4441 8.839310 AATGATATGGAGTAGCTTACACAATC 57.161 34.615 0.00 0.00 0.00 2.67
2356 4442 6.759272 TGATATGGAGTAGCTTACACAATCC 58.241 40.000 0.00 0.00 0.00 3.01
2357 4443 3.520290 TGGAGTAGCTTACACAATCCG 57.480 47.619 0.00 0.00 0.00 4.18
2358 4444 2.202566 GGAGTAGCTTACACAATCCGC 58.797 52.381 0.00 0.00 0.00 5.54
2359 4445 1.852895 GAGTAGCTTACACAATCCGCG 59.147 52.381 0.00 0.00 0.00 6.46
2360 4446 0.928229 GTAGCTTACACAATCCGCGG 59.072 55.000 22.12 22.12 0.00 6.46
2361 4447 0.533491 TAGCTTACACAATCCGCGGT 59.467 50.000 27.15 10.00 0.00 5.68
2362 4448 0.321298 AGCTTACACAATCCGCGGTT 60.321 50.000 27.15 15.26 0.00 4.44
2363 4449 0.519961 GCTTACACAATCCGCGGTTT 59.480 50.000 27.15 21.10 0.00 3.27
2364 4450 1.727857 GCTTACACAATCCGCGGTTTG 60.728 52.381 35.77 35.77 0.00 2.93
2365 4451 0.238817 TTACACAATCCGCGGTTTGC 59.761 50.000 36.79 0.00 41.47 3.68
2366 4452 1.579084 TACACAATCCGCGGTTTGCC 61.579 55.000 36.79 0.00 42.08 4.52
2367 4453 2.282180 ACAATCCGCGGTTTGCCT 60.282 55.556 36.79 22.58 42.08 4.75
2368 4454 1.003112 ACAATCCGCGGTTTGCCTA 60.003 52.632 36.79 15.24 42.08 3.93
2369 4455 0.606944 ACAATCCGCGGTTTGCCTAA 60.607 50.000 36.79 14.51 42.08 2.69
2370 4456 0.179174 CAATCCGCGGTTTGCCTAAC 60.179 55.000 30.04 0.00 42.08 2.34
2380 4466 1.813178 GTTTGCCTAACCTCTCTTGGC 59.187 52.381 0.00 0.00 43.49 4.52
2382 4468 3.957288 GCCTAACCTCTCTTGGCAA 57.043 52.632 0.00 0.00 42.79 4.52
2383 4469 1.743996 GCCTAACCTCTCTTGGCAAG 58.256 55.000 21.17 21.17 42.79 4.01
2384 4470 1.743996 CCTAACCTCTCTTGGCAAGC 58.256 55.000 22.31 0.00 0.00 4.01
2385 4471 1.280421 CCTAACCTCTCTTGGCAAGCT 59.720 52.381 22.31 4.96 0.00 3.74
2386 4472 2.290577 CCTAACCTCTCTTGGCAAGCTT 60.291 50.000 22.31 9.97 0.00 3.74
2387 4473 2.371658 AACCTCTCTTGGCAAGCTTT 57.628 45.000 22.31 7.45 0.00 3.51
2388 4474 2.371658 ACCTCTCTTGGCAAGCTTTT 57.628 45.000 22.31 2.59 0.00 2.27
2389 4475 2.234143 ACCTCTCTTGGCAAGCTTTTC 58.766 47.619 22.31 0.00 0.00 2.29
2390 4476 1.543358 CCTCTCTTGGCAAGCTTTTCC 59.457 52.381 22.31 1.34 0.00 3.13
2391 4477 1.198637 CTCTCTTGGCAAGCTTTTCCG 59.801 52.381 22.31 0.00 0.00 4.30
2392 4478 0.954452 CTCTTGGCAAGCTTTTCCGT 59.046 50.000 22.31 0.00 0.00 4.69
2393 4479 2.151202 CTCTTGGCAAGCTTTTCCGTA 58.849 47.619 22.31 0.85 0.00 4.02
2394 4480 1.877443 TCTTGGCAAGCTTTTCCGTAC 59.123 47.619 22.31 0.00 0.00 3.67
2395 4481 1.880027 CTTGGCAAGCTTTTCCGTACT 59.120 47.619 15.25 0.00 0.00 2.73
2396 4482 1.519408 TGGCAAGCTTTTCCGTACTC 58.481 50.000 0.00 0.00 0.00 2.59
2397 4483 1.202710 TGGCAAGCTTTTCCGTACTCA 60.203 47.619 0.00 0.00 0.00 3.41
2398 4484 2.084546 GGCAAGCTTTTCCGTACTCAT 58.915 47.619 0.00 0.00 0.00 2.90
2399 4485 2.096013 GGCAAGCTTTTCCGTACTCATC 59.904 50.000 0.00 0.00 0.00 2.92
2400 4486 2.742053 GCAAGCTTTTCCGTACTCATCA 59.258 45.455 0.00 0.00 0.00 3.07
2401 4487 3.424962 GCAAGCTTTTCCGTACTCATCAC 60.425 47.826 0.00 0.00 0.00 3.06
2402 4488 2.973945 AGCTTTTCCGTACTCATCACC 58.026 47.619 0.00 0.00 0.00 4.02
2403 4489 1.659098 GCTTTTCCGTACTCATCACCG 59.341 52.381 0.00 0.00 0.00 4.94
2404 4490 2.929592 GCTTTTCCGTACTCATCACCGT 60.930 50.000 0.00 0.00 0.00 4.83
2405 4491 3.674138 GCTTTTCCGTACTCATCACCGTA 60.674 47.826 0.00 0.00 0.00 4.02
2406 4492 4.679662 CTTTTCCGTACTCATCACCGTAT 58.320 43.478 0.00 0.00 0.00 3.06
2407 4493 3.703286 TTCCGTACTCATCACCGTATG 57.297 47.619 0.00 0.00 0.00 2.39
2408 4494 1.951602 TCCGTACTCATCACCGTATGG 59.048 52.381 0.00 0.00 41.84 2.74
2409 4495 1.951602 CCGTACTCATCACCGTATGGA 59.048 52.381 8.33 0.00 42.67 3.41
2410 4496 2.031069 CCGTACTCATCACCGTATGGAG 60.031 54.545 8.33 0.00 42.67 3.86
2411 4497 2.604855 CGTACTCATCACCGTATGGAGC 60.605 54.545 8.33 0.00 39.21 4.70
2412 4498 1.485124 ACTCATCACCGTATGGAGCA 58.515 50.000 8.33 0.00 39.21 4.26
2413 4499 1.410517 ACTCATCACCGTATGGAGCAG 59.589 52.381 8.33 0.00 39.21 4.24
2414 4500 0.104855 TCATCACCGTATGGAGCAGC 59.895 55.000 8.33 0.00 39.21 5.25
2415 4501 0.105593 CATCACCGTATGGAGCAGCT 59.894 55.000 8.33 0.00 39.21 4.24
2416 4502 0.833287 ATCACCGTATGGAGCAGCTT 59.167 50.000 8.33 0.00 39.21 3.74
2417 4503 1.480789 TCACCGTATGGAGCAGCTTA 58.519 50.000 8.33 0.00 39.21 3.09
2418 4504 1.136305 TCACCGTATGGAGCAGCTTAC 59.864 52.381 8.33 0.00 39.21 2.34
2419 4505 1.134818 CACCGTATGGAGCAGCTTACA 60.135 52.381 8.33 0.00 39.21 2.41
2420 4506 1.134788 ACCGTATGGAGCAGCTTACAC 60.135 52.381 8.33 0.00 39.21 2.90
2421 4507 1.134818 CCGTATGGAGCAGCTTACACA 60.135 52.381 0.00 0.00 37.49 3.72
2422 4508 2.616960 CGTATGGAGCAGCTTACACAA 58.383 47.619 0.00 0.00 0.00 3.33
2423 4509 3.198068 CGTATGGAGCAGCTTACACAAT 58.802 45.455 0.00 0.00 0.00 2.71
2424 4510 3.246226 CGTATGGAGCAGCTTACACAATC 59.754 47.826 0.00 0.00 0.00 2.67
2425 4511 2.113860 TGGAGCAGCTTACACAATCC 57.886 50.000 0.00 0.00 0.00 3.01
2426 4512 1.350684 TGGAGCAGCTTACACAATCCA 59.649 47.619 0.00 0.00 33.11 3.41
2427 4513 1.740025 GGAGCAGCTTACACAATCCAC 59.260 52.381 0.00 0.00 0.00 4.02
2428 4514 1.740025 GAGCAGCTTACACAATCCACC 59.260 52.381 0.00 0.00 0.00 4.61
2429 4515 0.811281 GCAGCTTACACAATCCACCC 59.189 55.000 0.00 0.00 0.00 4.61
2430 4516 1.463674 CAGCTTACACAATCCACCCC 58.536 55.000 0.00 0.00 0.00 4.95
2431 4517 0.331616 AGCTTACACAATCCACCCCC 59.668 55.000 0.00 0.00 0.00 5.40
2446 4532 3.890527 CCCCCACCTGAAATCAGAG 57.109 57.895 11.94 4.94 46.59 3.35
2447 4533 0.257039 CCCCCACCTGAAATCAGAGG 59.743 60.000 11.94 12.14 46.59 3.69
2448 4534 3.890527 CCCACCTGAAATCAGAGGG 57.109 57.895 19.64 19.64 46.59 4.30
2449 4535 0.257039 CCCACCTGAAATCAGAGGGG 59.743 60.000 22.88 20.85 46.36 4.79
2450 4536 0.257039 CCACCTGAAATCAGAGGGGG 59.743 60.000 11.94 3.89 46.77 5.40
2451 4537 1.289160 CACCTGAAATCAGAGGGGGA 58.711 55.000 11.94 0.00 46.59 4.81
2452 4538 1.211457 CACCTGAAATCAGAGGGGGAG 59.789 57.143 11.94 0.00 46.59 4.30
2453 4539 0.842635 CCTGAAATCAGAGGGGGAGG 59.157 60.000 11.94 0.00 46.59 4.30
2454 4540 0.842635 CTGAAATCAGAGGGGGAGGG 59.157 60.000 4.37 0.00 46.59 4.30
2455 4541 0.624500 TGAAATCAGAGGGGGAGGGG 60.625 60.000 0.00 0.00 0.00 4.79
2456 4542 1.309102 AAATCAGAGGGGGAGGGGG 60.309 63.158 0.00 0.00 0.00 5.40
2481 4567 5.888982 GGGGGAGATTAGATACTTTGTGA 57.111 43.478 0.00 0.00 0.00 3.58
2482 4568 6.441088 GGGGGAGATTAGATACTTTGTGAT 57.559 41.667 0.00 0.00 0.00 3.06
2483 4569 6.842676 GGGGGAGATTAGATACTTTGTGATT 58.157 40.000 0.00 0.00 0.00 2.57
2484 4570 6.937465 GGGGGAGATTAGATACTTTGTGATTC 59.063 42.308 0.00 0.00 0.00 2.52
2485 4571 6.647067 GGGGAGATTAGATACTTTGTGATTCG 59.353 42.308 0.00 0.00 0.00 3.34
2486 4572 7.210873 GGGAGATTAGATACTTTGTGATTCGT 58.789 38.462 0.00 0.00 0.00 3.85
2487 4573 7.169982 GGGAGATTAGATACTTTGTGATTCGTG 59.830 40.741 0.00 0.00 0.00 4.35
2488 4574 7.921214 GGAGATTAGATACTTTGTGATTCGTGA 59.079 37.037 0.00 0.00 0.00 4.35
2489 4575 9.302345 GAGATTAGATACTTTGTGATTCGTGAA 57.698 33.333 0.00 0.00 0.00 3.18
2490 4576 9.823647 AGATTAGATACTTTGTGATTCGTGAAT 57.176 29.630 0.00 0.00 0.00 2.57
2491 4577 9.855361 GATTAGATACTTTGTGATTCGTGAATG 57.145 33.333 0.00 0.00 0.00 2.67
2492 4578 8.771920 TTAGATACTTTGTGATTCGTGAATGT 57.228 30.769 0.00 0.00 0.00 2.71
2493 4579 7.295952 AGATACTTTGTGATTCGTGAATGTC 57.704 36.000 0.00 0.00 0.00 3.06
2494 4580 6.873605 AGATACTTTGTGATTCGTGAATGTCA 59.126 34.615 0.00 0.00 0.00 3.58
2495 4581 5.095691 ACTTTGTGATTCGTGAATGTCAC 57.904 39.130 0.00 4.81 43.65 3.67
2507 4593 5.165911 GTGAATGTCACATGTCATCCATC 57.834 43.478 0.00 0.00 46.22 3.51
2508 4594 4.637091 GTGAATGTCACATGTCATCCATCA 59.363 41.667 0.00 0.00 46.22 3.07
2509 4595 4.879545 TGAATGTCACATGTCATCCATCAG 59.120 41.667 0.00 0.00 0.00 2.90
2510 4596 3.271055 TGTCACATGTCATCCATCAGG 57.729 47.619 0.00 0.00 0.00 3.86
2519 4605 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
2520 4606 1.386550 TCCATCAGGACGGGTCTCA 59.613 57.895 0.00 0.00 39.61 3.27
2521 4607 0.970937 TCCATCAGGACGGGTCTCAC 60.971 60.000 0.00 0.00 39.61 3.51
2522 4608 1.517832 CATCAGGACGGGTCTCACC 59.482 63.158 0.00 0.00 37.60 4.02
2523 4609 0.972983 CATCAGGACGGGTCTCACCT 60.973 60.000 0.00 0.00 38.64 4.00
2533 4619 3.728845 CGGGTCTCACCTGGTTTATATG 58.271 50.000 0.00 0.00 41.01 1.78
2534 4620 3.386726 CGGGTCTCACCTGGTTTATATGA 59.613 47.826 0.00 0.00 41.01 2.15
2535 4621 4.501571 CGGGTCTCACCTGGTTTATATGAG 60.502 50.000 0.00 0.00 41.01 2.90
2536 4622 4.654262 GGGTCTCACCTGGTTTATATGAGA 59.346 45.833 8.01 8.01 42.63 3.27
2538 4624 5.871396 TCTCACCTGGTTTATATGAGACC 57.129 43.478 8.01 0.00 40.59 3.85
2539 4625 5.529289 TCTCACCTGGTTTATATGAGACCT 58.471 41.667 8.01 0.00 40.59 3.85
2540 4626 5.363868 TCTCACCTGGTTTATATGAGACCTG 59.636 44.000 8.01 5.28 40.59 4.00
2543 4629 4.962155 CCTGGTTTATATGAGACCTGGTC 58.038 47.826 19.20 19.20 43.59 4.02
2544 4630 4.656112 CCTGGTTTATATGAGACCTGGTCT 59.344 45.833 28.70 28.70 46.42 3.85
2600 4686 5.738619 AAAAAGGCGTCCATTTAATCCTT 57.261 34.783 0.70 0.00 35.63 3.36
2601 4687 4.718940 AAAGGCGTCCATTTAATCCTTG 57.281 40.909 0.00 0.00 34.49 3.61
2602 4688 3.644966 AGGCGTCCATTTAATCCTTGA 57.355 42.857 0.00 0.00 0.00 3.02
2603 4689 4.170468 AGGCGTCCATTTAATCCTTGAT 57.830 40.909 0.00 0.00 0.00 2.57
2604 4690 5.304686 AGGCGTCCATTTAATCCTTGATA 57.695 39.130 0.00 0.00 0.00 2.15
2605 4691 5.690865 AGGCGTCCATTTAATCCTTGATAA 58.309 37.500 0.00 0.00 0.00 1.75
2606 4692 5.765182 AGGCGTCCATTTAATCCTTGATAAG 59.235 40.000 0.00 0.00 0.00 1.73
2615 4701 3.502164 CCTTGATAAGGTGGGCCTG 57.498 57.895 4.53 0.00 46.33 4.85
2616 4702 0.918983 CCTTGATAAGGTGGGCCTGA 59.081 55.000 4.53 0.00 46.33 3.86
2617 4703 1.284785 CCTTGATAAGGTGGGCCTGAA 59.715 52.381 4.53 0.00 46.33 3.02
2618 4704 2.291540 CCTTGATAAGGTGGGCCTGAAA 60.292 50.000 4.53 0.00 46.33 2.69
2619 4705 3.430453 CTTGATAAGGTGGGCCTGAAAA 58.570 45.455 4.53 0.00 46.33 2.29
2620 4706 3.085952 TGATAAGGTGGGCCTGAAAAG 57.914 47.619 4.53 0.00 46.33 2.27
2621 4707 2.378547 TGATAAGGTGGGCCTGAAAAGT 59.621 45.455 4.53 0.00 46.33 2.66
2622 4708 2.286365 TAAGGTGGGCCTGAAAAGTG 57.714 50.000 4.53 0.00 46.33 3.16
2623 4709 1.115326 AAGGTGGGCCTGAAAAGTGC 61.115 55.000 4.53 0.00 46.33 4.40
2624 4710 1.832167 GGTGGGCCTGAAAAGTGCA 60.832 57.895 4.53 0.00 0.00 4.57
2625 4711 1.662044 GTGGGCCTGAAAAGTGCAG 59.338 57.895 4.53 0.00 0.00 4.41
2626 4712 2.202395 TGGGCCTGAAAAGTGCAGC 61.202 57.895 4.53 0.00 32.06 5.25
2627 4713 1.905354 GGGCCTGAAAAGTGCAGCT 60.905 57.895 0.84 0.00 32.06 4.24
2628 4714 1.583477 GGCCTGAAAAGTGCAGCTC 59.417 57.895 0.00 0.00 32.06 4.09
2629 4715 1.583477 GCCTGAAAAGTGCAGCTCC 59.417 57.895 0.00 0.00 32.06 4.70
2630 4716 1.174712 GCCTGAAAAGTGCAGCTCCA 61.175 55.000 0.00 0.00 32.06 3.86
2631 4717 1.321474 CCTGAAAAGTGCAGCTCCAA 58.679 50.000 0.00 0.00 32.06 3.53
2632 4718 1.682854 CCTGAAAAGTGCAGCTCCAAA 59.317 47.619 0.00 0.00 32.06 3.28
2633 4719 2.288030 CCTGAAAAGTGCAGCTCCAAAG 60.288 50.000 0.00 0.00 32.06 2.77
2634 4720 2.360165 CTGAAAAGTGCAGCTCCAAAGT 59.640 45.455 0.00 0.00 0.00 2.66
2635 4721 2.099592 TGAAAAGTGCAGCTCCAAAGTG 59.900 45.455 0.00 0.00 0.00 3.16
2636 4722 1.767759 AAAGTGCAGCTCCAAAGTGT 58.232 45.000 0.00 0.00 0.00 3.55
2637 4723 1.027357 AAGTGCAGCTCCAAAGTGTG 58.973 50.000 0.00 0.00 0.00 3.82
2638 4724 1.008079 GTGCAGCTCCAAAGTGTGC 60.008 57.895 0.00 0.00 35.99 4.57
2639 4725 1.453562 TGCAGCTCCAAAGTGTGCA 60.454 52.632 0.00 0.00 40.28 4.57
2640 4726 1.036481 TGCAGCTCCAAAGTGTGCAA 61.036 50.000 0.00 0.00 39.89 4.08
2641 4727 0.102844 GCAGCTCCAAAGTGTGCAAA 59.897 50.000 0.00 0.00 35.69 3.68
2642 4728 1.471327 GCAGCTCCAAAGTGTGCAAAA 60.471 47.619 0.00 0.00 35.69 2.44
2643 4729 2.195922 CAGCTCCAAAGTGTGCAAAAC 58.804 47.619 0.00 0.00 0.00 2.43
2644 4730 2.102578 AGCTCCAAAGTGTGCAAAACT 58.897 42.857 0.00 0.00 34.22 2.66
2645 4731 2.099756 AGCTCCAAAGTGTGCAAAACTC 59.900 45.455 3.90 0.00 28.45 3.01
2646 4732 2.719798 CTCCAAAGTGTGCAAAACTCG 58.280 47.619 3.90 0.00 28.45 4.18
2647 4733 2.088423 TCCAAAGTGTGCAAAACTCGT 58.912 42.857 3.90 0.00 28.45 4.18
2648 4734 2.159448 TCCAAAGTGTGCAAAACTCGTG 60.159 45.455 3.90 5.84 28.45 4.35
2649 4735 2.159448 CCAAAGTGTGCAAAACTCGTGA 60.159 45.455 3.90 0.00 28.45 4.35
2650 4736 3.497118 CAAAGTGTGCAAAACTCGTGAA 58.503 40.909 3.90 0.00 28.45 3.18
2651 4737 3.405170 AAGTGTGCAAAACTCGTGAAG 57.595 42.857 3.90 0.00 28.45 3.02
2652 4738 2.627945 AGTGTGCAAAACTCGTGAAGA 58.372 42.857 0.00 0.00 10.98 2.87
2653 4739 3.206150 AGTGTGCAAAACTCGTGAAGAT 58.794 40.909 0.00 0.00 10.98 2.40
2654 4740 3.002656 AGTGTGCAAAACTCGTGAAGATG 59.997 43.478 0.00 0.00 10.98 2.90
2655 4741 3.002246 GTGTGCAAAACTCGTGAAGATGA 59.998 43.478 0.00 0.00 0.00 2.92
2656 4742 3.814842 TGTGCAAAACTCGTGAAGATGAT 59.185 39.130 0.00 0.00 0.00 2.45
2657 4743 4.153986 GTGCAAAACTCGTGAAGATGATG 58.846 43.478 0.00 0.00 0.00 3.07
2658 4744 4.064388 TGCAAAACTCGTGAAGATGATGA 58.936 39.130 0.00 0.00 0.00 2.92
2659 4745 4.514816 TGCAAAACTCGTGAAGATGATGAA 59.485 37.500 0.00 0.00 0.00 2.57
2660 4746 5.084722 GCAAAACTCGTGAAGATGATGAAG 58.915 41.667 0.00 0.00 0.00 3.02
2661 4747 5.625251 CAAAACTCGTGAAGATGATGAAGG 58.375 41.667 0.00 0.00 0.00 3.46
2662 4748 3.533606 ACTCGTGAAGATGATGAAGGG 57.466 47.619 0.00 0.00 0.00 3.95
2663 4749 2.834549 ACTCGTGAAGATGATGAAGGGT 59.165 45.455 0.00 0.00 0.00 4.34
2664 4750 3.193263 CTCGTGAAGATGATGAAGGGTG 58.807 50.000 0.00 0.00 0.00 4.61
2665 4751 1.667724 CGTGAAGATGATGAAGGGTGC 59.332 52.381 0.00 0.00 0.00 5.01
2666 4752 1.667724 GTGAAGATGATGAAGGGTGCG 59.332 52.381 0.00 0.00 0.00 5.34
2667 4753 1.303309 GAAGATGATGAAGGGTGCGG 58.697 55.000 0.00 0.00 0.00 5.69
2668 4754 0.749454 AAGATGATGAAGGGTGCGGC 60.749 55.000 0.00 0.00 0.00 6.53
2669 4755 2.124151 ATGATGAAGGGTGCGGCC 60.124 61.111 0.00 0.00 0.00 6.13
2670 4756 2.891941 GATGATGAAGGGTGCGGCCA 62.892 60.000 2.24 0.00 39.65 5.36
2671 4757 3.134127 GATGAAGGGTGCGGCCAC 61.134 66.667 2.24 0.00 41.32 5.01
2679 4765 2.975536 GTGCGGCCACCACTAGTA 59.024 61.111 14.54 0.00 35.92 1.82
2680 4766 1.520666 GTGCGGCCACCACTAGTAT 59.479 57.895 14.54 0.00 35.92 2.12
2681 4767 0.529992 GTGCGGCCACCACTAGTATC 60.530 60.000 14.54 0.00 35.92 2.24
2682 4768 0.973496 TGCGGCCACCACTAGTATCA 60.973 55.000 2.24 0.00 0.00 2.15
2683 4769 0.177141 GCGGCCACCACTAGTATCAA 59.823 55.000 2.24 0.00 0.00 2.57
2684 4770 1.806623 GCGGCCACCACTAGTATCAAG 60.807 57.143 2.24 0.00 0.00 3.02
2685 4771 1.480954 CGGCCACCACTAGTATCAAGT 59.519 52.381 2.24 0.00 0.00 3.16
2686 4772 2.093658 CGGCCACCACTAGTATCAAGTT 60.094 50.000 2.24 0.00 0.00 2.66
2687 4773 3.270877 GGCCACCACTAGTATCAAGTTG 58.729 50.000 0.00 0.00 0.00 3.16
2688 4774 3.055385 GGCCACCACTAGTATCAAGTTGA 60.055 47.826 8.27 8.27 0.00 3.18
2689 4775 4.384208 GGCCACCACTAGTATCAAGTTGAT 60.384 45.833 21.57 21.57 40.72 2.57
2690 4776 4.811557 GCCACCACTAGTATCAAGTTGATC 59.188 45.833 21.49 13.06 38.26 2.92
2691 4777 5.626809 GCCACCACTAGTATCAAGTTGATCA 60.627 44.000 21.49 7.90 38.26 2.92
2692 4778 6.406370 CCACCACTAGTATCAAGTTGATCAA 58.594 40.000 21.49 3.38 38.26 2.57
2693 4779 6.313905 CCACCACTAGTATCAAGTTGATCAAC 59.686 42.308 27.69 27.69 38.26 3.18
2694 4780 6.313905 CACCACTAGTATCAAGTTGATCAACC 59.686 42.308 30.34 16.45 42.06 3.77
2695 4781 5.817816 CCACTAGTATCAAGTTGATCAACCC 59.182 44.000 30.34 11.10 42.06 4.11
2696 4782 6.406370 CACTAGTATCAAGTTGATCAACCCA 58.594 40.000 30.34 17.26 42.06 4.51
2697 4783 6.878923 CACTAGTATCAAGTTGATCAACCCAA 59.121 38.462 30.34 18.12 42.06 4.12
2698 4784 7.065085 CACTAGTATCAAGTTGATCAACCCAAG 59.935 40.741 30.34 19.05 42.06 3.61
2699 4785 4.702131 AGTATCAAGTTGATCAACCCAAGC 59.298 41.667 30.34 17.97 42.06 4.01
2700 4786 1.879380 TCAAGTTGATCAACCCAAGCG 59.121 47.619 30.34 15.02 42.06 4.68
2701 4787 1.608590 CAAGTTGATCAACCCAAGCGT 59.391 47.619 30.34 11.17 42.06 5.07
2702 4788 1.981256 AGTTGATCAACCCAAGCGTT 58.019 45.000 30.34 10.47 42.06 4.84
2703 4789 1.608590 AGTTGATCAACCCAAGCGTTG 59.391 47.619 30.34 0.00 43.70 4.10
2704 4790 1.336755 GTTGATCAACCCAAGCGTTGT 59.663 47.619 25.26 0.00 43.02 3.32
2705 4791 1.686355 TGATCAACCCAAGCGTTGTT 58.314 45.000 0.00 0.00 43.02 2.83
2706 4792 1.336440 TGATCAACCCAAGCGTTGTTG 59.664 47.619 0.00 5.71 43.02 3.33
2707 4793 3.176728 TCAACCCAAGCGTTGTTGA 57.823 47.368 9.48 9.48 44.32 3.18
2708 4794 1.464734 TCAACCCAAGCGTTGTTGAA 58.535 45.000 10.68 0.00 43.76 2.69
2709 4795 1.133407 TCAACCCAAGCGTTGTTGAAC 59.867 47.619 10.68 0.00 43.76 3.18
2710 4796 1.135257 CAACCCAAGCGTTGTTGAACA 60.135 47.619 0.00 0.00 41.38 3.18
2711 4797 1.178276 ACCCAAGCGTTGTTGAACAA 58.822 45.000 6.66 6.66 35.42 2.83
2712 4798 1.134175 ACCCAAGCGTTGTTGAACAAG 59.866 47.619 11.54 7.02 39.00 3.16
2713 4799 1.535860 CCCAAGCGTTGTTGAACAAGG 60.536 52.381 22.24 22.24 44.25 3.61
2718 4804 2.119671 CGTTGTTGAACAAGGCCTTC 57.880 50.000 17.29 5.32 39.00 3.46
2719 4805 1.676006 CGTTGTTGAACAAGGCCTTCT 59.324 47.619 17.29 5.52 39.00 2.85
2720 4806 2.099098 CGTTGTTGAACAAGGCCTTCTT 59.901 45.455 17.29 11.09 39.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.850752 ACCTCCAACCAGGTATTTATTTTG 57.149 37.500 0.00 0.00 45.71 2.44
91 92 3.005554 CCATGATCGACTTCACAAGCTT 58.994 45.455 0.00 0.00 0.00 3.74
104 105 2.111878 GCCTCACCCCCATGATCG 59.888 66.667 0.00 0.00 0.00 3.69
122 123 6.755141 GCGTATGTAGTAAGAATTCCAGAACA 59.245 38.462 0.65 1.54 0.00 3.18
125 126 5.361571 TGGCGTATGTAGTAAGAATTCCAGA 59.638 40.000 0.65 0.00 0.00 3.86
145 146 2.547211 CCATAAAGCTCTTGATCTGGCG 59.453 50.000 0.00 0.00 0.00 5.69
158 159 4.058817 CGTATTCTGAGACCCCATAAAGC 58.941 47.826 0.00 0.00 0.00 3.51
159 160 4.058817 GCGTATTCTGAGACCCCATAAAG 58.941 47.826 0.00 0.00 0.00 1.85
201 207 6.630071 CCTTTCCTACCACAAATACCAAATG 58.370 40.000 0.00 0.00 0.00 2.32
218 224 3.681593 TGCATTAGTTTACGCCTTTCCT 58.318 40.909 0.00 0.00 0.00 3.36
225 231 6.598753 TTCTCCTTATGCATTAGTTTACGC 57.401 37.500 3.54 0.00 0.00 4.42
235 241 6.438425 ACACCTTGAATTTTCTCCTTATGCAT 59.562 34.615 3.79 3.79 0.00 3.96
236 242 5.774690 ACACCTTGAATTTTCTCCTTATGCA 59.225 36.000 0.00 0.00 0.00 3.96
264 270 8.045720 AGCTTTGTATCCCCATAGAAATCTAA 57.954 34.615 0.00 0.00 27.80 2.10
290 296 6.570058 GCAGCAACGATGTAATTATTCGTAAG 59.430 38.462 20.08 17.15 44.62 2.34
333 416 1.997606 CGCTCCAACCGTAACCTTAAG 59.002 52.381 0.00 0.00 0.00 1.85
376 459 2.709213 AGAAGCCTTCTGCAGTGAATC 58.291 47.619 14.67 6.28 44.83 2.52
388 471 3.073650 ACAGTCAATTCTCCAGAAGCCTT 59.926 43.478 0.00 0.00 37.48 4.35
423 507 2.560542 AGTGCTAGATCTTCCGCTATGG 59.439 50.000 0.00 0.00 40.09 2.74
426 510 4.715713 TCTAAGTGCTAGATCTTCCGCTA 58.284 43.478 0.00 0.00 31.28 4.26
455 539 2.612604 CCGTCGTTGTGTCATGGATAA 58.387 47.619 0.00 0.00 0.00 1.75
472 556 1.867233 GATAAGTCGATTGCATGCCGT 59.133 47.619 16.68 2.96 0.00 5.68
476 560 9.836076 AAATTATCATGATAAGTCGATTGCATG 57.164 29.630 27.37 10.46 36.79 4.06
484 568 7.969536 ACCTCCAAATTATCATGATAAGTCG 57.030 36.000 27.37 17.77 36.79 4.18
509 600 8.403236 CGTCCTTCATTATACATGGTATCGATA 58.597 37.037 0.00 0.00 0.00 2.92
522 613 3.958147 TCTGCTGACCGTCCTTCATTATA 59.042 43.478 0.00 0.00 0.00 0.98
544 635 2.376228 AAAAACTGCCGCCGCCATTT 62.376 50.000 0.00 0.00 0.00 2.32
549 640 0.109504 TAATCAAAAACTGCCGCCGC 60.110 50.000 0.00 0.00 0.00 6.53
604 695 8.402798 TGCTTCTTTCTTATAATGTTGGAACA 57.597 30.769 0.00 0.00 44.06 3.18
622 713 9.289782 ACTCATAGACAACTTTATTTGCTTCTT 57.710 29.630 0.00 0.00 0.00 2.52
635 726 2.488545 ACGAGCGAACTCATAGACAACT 59.511 45.455 0.00 0.00 43.66 3.16
636 727 2.594654 CACGAGCGAACTCATAGACAAC 59.405 50.000 0.00 0.00 43.66 3.32
642 733 2.610833 ACGATACACGAGCGAACTCATA 59.389 45.455 0.00 0.00 43.66 2.15
650 741 1.255342 CCAATCAACGATACACGAGCG 59.745 52.381 0.00 0.00 45.77 5.03
656 747 4.900684 TCCTCAAACCAATCAACGATACA 58.099 39.130 0.00 0.00 0.00 2.29
657 748 4.332819 CCTCCTCAAACCAATCAACGATAC 59.667 45.833 0.00 0.00 0.00 2.24
659 750 3.347216 CCTCCTCAAACCAATCAACGAT 58.653 45.455 0.00 0.00 0.00 3.73
660 751 2.552155 CCCTCCTCAAACCAATCAACGA 60.552 50.000 0.00 0.00 0.00 3.85
665 772 4.569719 TTAGACCCTCCTCAAACCAATC 57.430 45.455 0.00 0.00 0.00 2.67
670 777 7.039714 ACAATTTCATTTAGACCCTCCTCAAAC 60.040 37.037 0.00 0.00 0.00 2.93
761 873 8.588290 TTGCAATTTATAATACTCCAACCAGT 57.412 30.769 0.00 0.00 0.00 4.00
822 1267 7.678194 TTTTCATTTGCTATATTAGTTGCGC 57.322 32.000 0.00 0.00 0.00 6.09
829 1274 9.729023 CCATCGTGTTTTTCATTTGCTATATTA 57.271 29.630 0.00 0.00 0.00 0.98
849 1294 1.944024 CTCTTCTACGCTCTCCATCGT 59.056 52.381 0.00 0.00 42.09 3.73
882 1329 3.386237 GGACTCTCCGCAGCCACT 61.386 66.667 0.00 0.00 0.00 4.00
936 1387 1.931906 CTCACATGATGTCGGTCTGG 58.068 55.000 0.00 0.00 0.00 3.86
944 1395 0.393402 ATGCGTGGCTCACATGATGT 60.393 50.000 0.00 0.00 38.41 3.06
1209 1660 2.970639 CACATCGTGTCCTCCGGT 59.029 61.111 0.00 0.00 0.00 5.28
1418 1872 1.233019 GGAGATGGACATGCAATCGG 58.767 55.000 0.00 0.00 0.00 4.18
1500 1963 4.864247 GTGCAATTGGATCCAACAATACAC 59.136 41.667 29.32 24.73 37.55 2.90
1515 1981 0.179156 GGTCTGGATGCGTGCAATTG 60.179 55.000 0.53 0.00 0.00 2.32
1519 1985 4.408821 GGGGTCTGGATGCGTGCA 62.409 66.667 0.00 0.00 0.00 4.57
1523 1989 3.461773 ACGAGGGGTCTGGATGCG 61.462 66.667 0.00 0.00 0.00 4.73
1556 2022 0.522180 AGTACTGTCGACTGCGGAAG 59.478 55.000 20.88 9.35 38.28 3.46
1583 2049 3.870606 GCATCACGCACGTTAGGT 58.129 55.556 0.00 0.00 41.79 3.08
1758 2257 0.607489 ACTGCATGCCTGGTGAAGAC 60.607 55.000 16.68 0.00 0.00 3.01
1824 2323 8.235226 GTGATTCATAGCCAATTGATCATGTAG 58.765 37.037 7.12 0.00 0.00 2.74
1900 2404 4.822685 ATTGCACATTGCTATTCCCAAA 57.177 36.364 0.00 0.00 45.31 3.28
1943 2447 7.389330 TGCGTCCAAAAATTGACTAGATTTCTA 59.611 33.333 0.00 0.00 0.00 2.10
1955 2459 1.984990 CCGTGATGCGTCCAAAAATTG 59.015 47.619 2.83 0.00 39.32 2.32
1958 2462 1.519751 CCCCGTGATGCGTCCAAAAA 61.520 55.000 2.83 0.00 39.32 1.94
1974 2478 1.652947 TCCAAGACCTTAGACACCCC 58.347 55.000 0.00 0.00 0.00 4.95
1976 2480 3.108376 AGGATCCAAGACCTTAGACACC 58.892 50.000 15.82 0.00 31.95 4.16
2030 2546 9.927668 AAATGGAATATAACACTGTCAAAAAGG 57.072 29.630 0.00 0.00 0.00 3.11
2053 2569 7.971168 TGTTCAATCAACGTCTACAAACAAAAT 59.029 29.630 0.00 0.00 37.90 1.82
2079 2595 9.431887 GGGAACGTACACATATATTTGATACAT 57.568 33.333 5.88 0.00 0.00 2.29
2115 2633 7.254319 CCAACGCGTACACATATTCTTTCTATT 60.254 37.037 14.46 0.00 0.00 1.73
2117 2635 5.517411 CCAACGCGTACACATATTCTTTCTA 59.483 40.000 14.46 0.00 0.00 2.10
2119 2637 4.574759 CCAACGCGTACACATATTCTTTC 58.425 43.478 14.46 0.00 0.00 2.62
2120 2638 3.181514 GCCAACGCGTACACATATTCTTT 60.182 43.478 14.46 0.00 0.00 2.52
2149 2667 8.886719 ACAATACTACAACATCATCACATTCAG 58.113 33.333 0.00 0.00 0.00 3.02
2200 4286 1.511768 GTGGGCTCACGAGGTAGAC 59.488 63.158 0.00 0.00 33.87 2.59
2238 4324 1.755783 CCTTCCTCTTGGCATGGGC 60.756 63.158 0.00 0.00 40.13 5.36
2260 4346 1.820877 GCTTGGCCTTCCCTCCATATG 60.821 57.143 3.32 0.00 31.54 1.78
2263 4349 2.685999 GCTTGGCCTTCCCTCCAT 59.314 61.111 3.32 0.00 31.54 3.41
2264 4350 3.661648 GGCTTGGCCTTCCCTCCA 61.662 66.667 3.32 0.00 46.69 3.86
2287 4373 5.394005 CCTTCAGTGTTTGGAACATGACAAA 60.394 40.000 0.00 5.32 44.35 2.83
2305 4391 3.793144 GCTGGTTCGCGCCTTCAG 61.793 66.667 0.00 7.70 0.00 3.02
2308 4394 2.672996 AATGCTGGTTCGCGCCTT 60.673 55.556 0.00 0.00 0.00 4.35
2315 4401 5.235616 CCATATCATTTTGCAATGCTGGTTC 59.764 40.000 6.82 0.00 39.90 3.62
2318 4404 4.951254 TCCATATCATTTTGCAATGCTGG 58.049 39.130 6.82 2.23 39.90 4.85
2326 4412 7.012327 TGTGTAAGCTACTCCATATCATTTTGC 59.988 37.037 0.00 0.00 0.00 3.68
2328 4414 9.632638 ATTGTGTAAGCTACTCCATATCATTTT 57.367 29.630 0.00 0.00 0.00 1.82
2340 4426 1.470979 CCGCGGATTGTGTAAGCTACT 60.471 52.381 24.07 0.00 0.00 2.57
2342 4428 0.533491 ACCGCGGATTGTGTAAGCTA 59.467 50.000 35.90 0.00 0.00 3.32
2360 4446 1.813178 GCCAAGAGAGGTTAGGCAAAC 59.187 52.381 0.00 0.00 44.59 2.93
2361 4447 2.200373 GCCAAGAGAGGTTAGGCAAA 57.800 50.000 0.00 0.00 44.59 3.68
2362 4448 3.957288 GCCAAGAGAGGTTAGGCAA 57.043 52.632 0.00 0.00 44.59 4.52
2364 4450 1.743996 CTTGCCAAGAGAGGTTAGGC 58.256 55.000 0.00 0.00 45.41 3.93
2365 4451 1.280421 AGCTTGCCAAGAGAGGTTAGG 59.720 52.381 9.04 0.00 0.00 2.69
2366 4452 2.777832 AGCTTGCCAAGAGAGGTTAG 57.222 50.000 9.04 0.00 0.00 2.34
2367 4453 3.508845 AAAGCTTGCCAAGAGAGGTTA 57.491 42.857 9.04 0.00 31.53 2.85
2368 4454 2.371658 AAAGCTTGCCAAGAGAGGTT 57.628 45.000 9.04 0.00 32.98 3.50
2369 4455 2.234143 GAAAAGCTTGCCAAGAGAGGT 58.766 47.619 9.04 0.00 0.00 3.85
2370 4456 1.543358 GGAAAAGCTTGCCAAGAGAGG 59.457 52.381 9.04 0.00 0.00 3.69
2371 4457 1.198637 CGGAAAAGCTTGCCAAGAGAG 59.801 52.381 9.04 0.00 0.00 3.20
2372 4458 1.238439 CGGAAAAGCTTGCCAAGAGA 58.762 50.000 9.04 0.00 0.00 3.10
2373 4459 0.954452 ACGGAAAAGCTTGCCAAGAG 59.046 50.000 9.04 5.05 0.00 2.85
2374 4460 1.877443 GTACGGAAAAGCTTGCCAAGA 59.123 47.619 9.04 1.21 0.00 3.02
2375 4461 1.880027 AGTACGGAAAAGCTTGCCAAG 59.120 47.619 16.32 0.00 0.00 3.61
2376 4462 1.877443 GAGTACGGAAAAGCTTGCCAA 59.123 47.619 16.32 3.77 0.00 4.52
2377 4463 1.202710 TGAGTACGGAAAAGCTTGCCA 60.203 47.619 16.32 0.00 0.00 4.92
2378 4464 1.519408 TGAGTACGGAAAAGCTTGCC 58.481 50.000 0.00 3.91 0.00 4.52
2379 4465 2.742053 TGATGAGTACGGAAAAGCTTGC 59.258 45.455 0.00 0.00 0.00 4.01
2380 4466 3.125316 GGTGATGAGTACGGAAAAGCTTG 59.875 47.826 0.00 0.00 0.00 4.01
2381 4467 3.335579 GGTGATGAGTACGGAAAAGCTT 58.664 45.455 0.00 0.00 0.00 3.74
2382 4468 2.674177 CGGTGATGAGTACGGAAAAGCT 60.674 50.000 0.00 0.00 0.00 3.74
2383 4469 1.659098 CGGTGATGAGTACGGAAAAGC 59.341 52.381 0.00 0.00 0.00 3.51
2384 4470 2.955614 ACGGTGATGAGTACGGAAAAG 58.044 47.619 0.00 0.00 0.00 2.27
2385 4471 4.426416 CATACGGTGATGAGTACGGAAAA 58.574 43.478 0.00 0.00 0.00 2.29
2386 4472 3.181484 CCATACGGTGATGAGTACGGAAA 60.181 47.826 0.00 0.00 28.49 3.13
2387 4473 2.359848 CCATACGGTGATGAGTACGGAA 59.640 50.000 0.00 0.00 28.49 4.30
2388 4474 1.951602 CCATACGGTGATGAGTACGGA 59.048 52.381 0.00 0.00 28.49 4.69
2389 4475 1.951602 TCCATACGGTGATGAGTACGG 59.048 52.381 0.00 0.00 0.00 4.02
2390 4476 2.604855 GCTCCATACGGTGATGAGTACG 60.605 54.545 0.00 0.00 0.00 3.67
2391 4477 2.361119 TGCTCCATACGGTGATGAGTAC 59.639 50.000 0.00 0.00 0.00 2.73
2392 4478 2.623416 CTGCTCCATACGGTGATGAGTA 59.377 50.000 0.00 0.00 0.00 2.59
2393 4479 1.410517 CTGCTCCATACGGTGATGAGT 59.589 52.381 0.00 0.00 0.00 3.41
2394 4480 1.871408 GCTGCTCCATACGGTGATGAG 60.871 57.143 0.00 0.00 0.00 2.90
2395 4481 0.104855 GCTGCTCCATACGGTGATGA 59.895 55.000 0.00 0.00 0.00 2.92
2396 4482 0.105593 AGCTGCTCCATACGGTGATG 59.894 55.000 0.00 0.00 0.00 3.07
2397 4483 0.833287 AAGCTGCTCCATACGGTGAT 59.167 50.000 1.00 0.00 0.00 3.06
2398 4484 1.136305 GTAAGCTGCTCCATACGGTGA 59.864 52.381 1.00 0.00 0.00 4.02
2399 4485 1.134818 TGTAAGCTGCTCCATACGGTG 60.135 52.381 1.00 0.00 0.00 4.94
2400 4486 1.134788 GTGTAAGCTGCTCCATACGGT 60.135 52.381 1.00 0.00 0.00 4.83
2401 4487 1.134818 TGTGTAAGCTGCTCCATACGG 60.135 52.381 1.00 0.00 0.00 4.02
2402 4488 2.293677 TGTGTAAGCTGCTCCATACG 57.706 50.000 1.00 0.00 0.00 3.06
2403 4489 3.561725 GGATTGTGTAAGCTGCTCCATAC 59.438 47.826 1.00 2.62 0.00 2.39
2404 4490 3.199727 TGGATTGTGTAAGCTGCTCCATA 59.800 43.478 1.00 0.00 0.00 2.74
2405 4491 2.025981 TGGATTGTGTAAGCTGCTCCAT 60.026 45.455 1.00 0.00 0.00 3.41
2406 4492 1.350684 TGGATTGTGTAAGCTGCTCCA 59.649 47.619 1.00 0.10 0.00 3.86
2407 4493 1.740025 GTGGATTGTGTAAGCTGCTCC 59.260 52.381 1.00 0.00 0.00 4.70
2408 4494 1.740025 GGTGGATTGTGTAAGCTGCTC 59.260 52.381 1.00 0.00 0.00 4.26
2409 4495 1.614317 GGGTGGATTGTGTAAGCTGCT 60.614 52.381 0.00 0.00 0.00 4.24
2410 4496 0.811281 GGGTGGATTGTGTAAGCTGC 59.189 55.000 0.00 0.00 0.00 5.25
2411 4497 1.463674 GGGGTGGATTGTGTAAGCTG 58.536 55.000 0.00 0.00 0.00 4.24
2412 4498 0.331616 GGGGGTGGATTGTGTAAGCT 59.668 55.000 0.00 0.00 0.00 3.74
2413 4499 2.882170 GGGGGTGGATTGTGTAAGC 58.118 57.895 0.00 0.00 0.00 3.09
2428 4514 0.257039 CCTCTGATTTCAGGTGGGGG 59.743 60.000 7.68 0.52 43.91 5.40
2429 4515 0.257039 CCCTCTGATTTCAGGTGGGG 59.743 60.000 21.51 18.19 45.46 4.96
2430 4516 3.890527 CCCTCTGATTTCAGGTGGG 57.109 57.895 18.31 18.31 44.70 4.61
2431 4517 0.257039 CCCCCTCTGATTTCAGGTGG 59.743 60.000 7.68 9.75 43.91 4.61
2432 4518 1.211457 CTCCCCCTCTGATTTCAGGTG 59.789 57.143 7.68 2.03 43.91 4.00
2433 4519 1.589414 CTCCCCCTCTGATTTCAGGT 58.411 55.000 7.68 0.00 43.91 4.00
2434 4520 0.842635 CCTCCCCCTCTGATTTCAGG 59.157 60.000 7.68 0.00 43.91 3.86
2435 4521 0.842635 CCCTCCCCCTCTGATTTCAG 59.157 60.000 0.97 0.97 45.08 3.02
2436 4522 0.624500 CCCCTCCCCCTCTGATTTCA 60.625 60.000 0.00 0.00 0.00 2.69
2437 4523 1.356494 CCCCCTCCCCCTCTGATTTC 61.356 65.000 0.00 0.00 0.00 2.17
2438 4524 1.309102 CCCCCTCCCCCTCTGATTT 60.309 63.158 0.00 0.00 0.00 2.17
2439 4525 2.378522 CCCCCTCCCCCTCTGATT 59.621 66.667 0.00 0.00 0.00 2.57
2459 4545 5.888982 TCACAAAGTATCTAATCTCCCCC 57.111 43.478 0.00 0.00 0.00 5.40
2460 4546 6.647067 CGAATCACAAAGTATCTAATCTCCCC 59.353 42.308 0.00 0.00 0.00 4.81
2461 4547 7.169982 CACGAATCACAAAGTATCTAATCTCCC 59.830 40.741 0.00 0.00 0.00 4.30
2462 4548 7.921214 TCACGAATCACAAAGTATCTAATCTCC 59.079 37.037 0.00 0.00 0.00 3.71
2463 4549 8.858003 TCACGAATCACAAAGTATCTAATCTC 57.142 34.615 0.00 0.00 0.00 2.75
2464 4550 9.823647 ATTCACGAATCACAAAGTATCTAATCT 57.176 29.630 0.00 0.00 0.00 2.40
2465 4551 9.855361 CATTCACGAATCACAAAGTATCTAATC 57.145 33.333 0.00 0.00 0.00 1.75
2466 4552 9.383519 ACATTCACGAATCACAAAGTATCTAAT 57.616 29.630 0.00 0.00 0.00 1.73
2467 4553 8.771920 ACATTCACGAATCACAAAGTATCTAA 57.228 30.769 0.00 0.00 0.00 2.10
2468 4554 8.032451 TGACATTCACGAATCACAAAGTATCTA 58.968 33.333 0.00 0.00 0.00 1.98
2469 4555 6.873605 TGACATTCACGAATCACAAAGTATCT 59.126 34.615 0.00 0.00 0.00 1.98
2470 4556 6.955963 GTGACATTCACGAATCACAAAGTATC 59.044 38.462 8.11 0.00 37.67 2.24
2471 4557 6.831769 GTGACATTCACGAATCACAAAGTAT 58.168 36.000 8.11 0.00 37.67 2.12
2472 4558 6.223138 GTGACATTCACGAATCACAAAGTA 57.777 37.500 8.11 0.00 37.67 2.24
2473 4559 5.095691 GTGACATTCACGAATCACAAAGT 57.904 39.130 8.11 0.00 37.67 2.66
2485 4571 8.111097 CCTGATGGATGACATGTGACATTCAC 62.111 46.154 1.15 2.81 38.23 3.18
2486 4572 4.846040 TGATGGATGACATGTGACATTCA 58.154 39.130 1.15 7.05 40.72 2.57
2487 4573 4.275196 CCTGATGGATGACATGTGACATTC 59.725 45.833 1.15 0.31 40.72 2.67
2488 4574 4.080186 TCCTGATGGATGACATGTGACATT 60.080 41.667 1.15 0.00 40.72 2.71
2489 4575 3.457012 TCCTGATGGATGACATGTGACAT 59.543 43.478 1.15 0.36 40.72 3.06
2490 4576 2.839425 TCCTGATGGATGACATGTGACA 59.161 45.455 1.15 0.00 40.72 3.58
2491 4577 3.201290 GTCCTGATGGATGACATGTGAC 58.799 50.000 1.15 0.00 45.29 3.67
2492 4578 3.548745 GTCCTGATGGATGACATGTGA 57.451 47.619 1.15 0.00 45.29 3.58
2500 4586 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
2501 4587 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.000 6.98 0.00 45.29 3.41
2502 4588 0.970937 GTGAGACCCGTCCTGATGGA 60.971 60.000 6.98 0.00 39.90 3.41
2503 4589 1.517832 GTGAGACCCGTCCTGATGG 59.482 63.158 0.00 0.00 37.23 3.51
2504 4590 0.972983 AGGTGAGACCCGTCCTGATG 60.973 60.000 0.00 0.00 39.75 3.07
2505 4591 1.388531 AGGTGAGACCCGTCCTGAT 59.611 57.895 0.00 0.00 39.75 2.90
2506 4592 2.851801 AGGTGAGACCCGTCCTGA 59.148 61.111 0.00 0.00 39.75 3.86
2507 4593 2.650116 CCAGGTGAGACCCGTCCTG 61.650 68.421 0.00 0.00 44.74 3.86
2508 4594 2.283966 CCAGGTGAGACCCGTCCT 60.284 66.667 0.00 0.00 39.75 3.85
2509 4595 1.765597 AAACCAGGTGAGACCCGTCC 61.766 60.000 0.00 0.00 39.75 4.79
2510 4596 0.971386 TAAACCAGGTGAGACCCGTC 59.029 55.000 0.00 0.00 39.75 4.79
2511 4597 1.652947 ATAAACCAGGTGAGACCCGT 58.347 50.000 0.00 0.00 39.75 5.28
2512 4598 3.386726 TCATATAAACCAGGTGAGACCCG 59.613 47.826 0.00 0.00 39.75 5.28
2513 4599 4.654262 TCTCATATAAACCAGGTGAGACCC 59.346 45.833 0.00 0.00 40.06 4.46
2514 4600 5.871396 TCTCATATAAACCAGGTGAGACC 57.129 43.478 0.00 0.00 40.06 3.85
2516 4602 5.363868 CAGGTCTCATATAAACCAGGTGAGA 59.636 44.000 0.00 0.00 41.99 3.27
2517 4603 5.453903 CCAGGTCTCATATAAACCAGGTGAG 60.454 48.000 0.00 0.00 35.58 3.51
2518 4604 4.408921 CCAGGTCTCATATAAACCAGGTGA 59.591 45.833 0.00 0.00 35.58 4.02
2519 4605 4.708177 CCAGGTCTCATATAAACCAGGTG 58.292 47.826 0.00 0.00 35.58 4.00
2520 4606 4.371681 ACCAGGTCTCATATAAACCAGGT 58.628 43.478 10.07 10.07 45.18 4.00
2521 4607 4.656112 AGACCAGGTCTCATATAAACCAGG 59.344 45.833 17.31 9.11 38.71 4.45
2522 4608 5.878406 AGACCAGGTCTCATATAAACCAG 57.122 43.478 17.31 0.00 38.71 4.00
2578 4664 5.245075 TCAAGGATTAAATGGACGCCTTTTT 59.755 36.000 12.51 8.08 33.73 1.94
2579 4665 4.770010 TCAAGGATTAAATGGACGCCTTTT 59.230 37.500 12.12 12.12 33.73 2.27
2580 4666 4.340617 TCAAGGATTAAATGGACGCCTTT 58.659 39.130 0.00 0.00 33.73 3.11
2581 4667 3.963129 TCAAGGATTAAATGGACGCCTT 58.037 40.909 0.00 0.00 36.24 4.35
2582 4668 3.644966 TCAAGGATTAAATGGACGCCT 57.355 42.857 0.00 0.00 0.00 5.52
2583 4669 6.002062 CTTATCAAGGATTAAATGGACGCC 57.998 41.667 0.00 0.00 0.00 5.68
2606 4692 1.809567 CTGCACTTTTCAGGCCCACC 61.810 60.000 0.00 0.00 0.00 4.61
2607 4693 1.662044 CTGCACTTTTCAGGCCCAC 59.338 57.895 0.00 0.00 0.00 4.61
2608 4694 2.202395 GCTGCACTTTTCAGGCCCA 61.202 57.895 0.00 0.00 32.41 5.36
2609 4695 1.871126 GAGCTGCACTTTTCAGGCCC 61.871 60.000 0.00 0.00 32.41 5.80
2610 4696 1.583477 GAGCTGCACTTTTCAGGCC 59.417 57.895 1.02 0.00 32.41 5.19
2611 4697 1.174712 TGGAGCTGCACTTTTCAGGC 61.175 55.000 2.72 0.00 32.41 4.85
2612 4698 1.321474 TTGGAGCTGCACTTTTCAGG 58.679 50.000 7.72 0.00 32.41 3.86
2613 4699 2.360165 ACTTTGGAGCTGCACTTTTCAG 59.640 45.455 7.72 0.00 34.79 3.02
2614 4700 2.099592 CACTTTGGAGCTGCACTTTTCA 59.900 45.455 7.72 0.00 0.00 2.69
2615 4701 2.099756 ACACTTTGGAGCTGCACTTTTC 59.900 45.455 7.72 0.00 0.00 2.29
2616 4702 2.102578 ACACTTTGGAGCTGCACTTTT 58.897 42.857 7.72 0.00 0.00 2.27
2617 4703 1.406539 CACACTTTGGAGCTGCACTTT 59.593 47.619 7.72 0.00 0.00 2.66
2618 4704 1.027357 CACACTTTGGAGCTGCACTT 58.973 50.000 7.72 0.00 0.00 3.16
2619 4705 1.450531 GCACACTTTGGAGCTGCACT 61.451 55.000 7.72 0.00 32.62 4.40
2620 4706 1.008079 GCACACTTTGGAGCTGCAC 60.008 57.895 7.72 0.00 32.62 4.57
2621 4707 1.036481 TTGCACACTTTGGAGCTGCA 61.036 50.000 2.72 2.72 37.82 4.41
2622 4708 0.102844 TTTGCACACTTTGGAGCTGC 59.897 50.000 0.00 0.00 32.85 5.25
2623 4709 2.159198 AGTTTTGCACACTTTGGAGCTG 60.159 45.455 0.00 0.00 0.00 4.24
2624 4710 2.099756 GAGTTTTGCACACTTTGGAGCT 59.900 45.455 0.00 0.00 0.00 4.09
2625 4711 2.463876 GAGTTTTGCACACTTTGGAGC 58.536 47.619 0.00 0.00 0.00 4.70
2626 4712 2.097466 ACGAGTTTTGCACACTTTGGAG 59.903 45.455 0.00 0.00 0.00 3.86
2627 4713 2.088423 ACGAGTTTTGCACACTTTGGA 58.912 42.857 0.00 0.00 0.00 3.53
2628 4714 2.159448 TCACGAGTTTTGCACACTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
2629 4715 3.129852 TCACGAGTTTTGCACACTTTG 57.870 42.857 0.00 1.55 0.00 2.77
2630 4716 3.438781 TCTTCACGAGTTTTGCACACTTT 59.561 39.130 0.00 0.00 0.00 2.66
2631 4717 3.006940 TCTTCACGAGTTTTGCACACTT 58.993 40.909 0.00 0.00 0.00 3.16
2632 4718 2.627945 TCTTCACGAGTTTTGCACACT 58.372 42.857 0.00 0.00 0.00 3.55
2633 4719 3.002246 TCATCTTCACGAGTTTTGCACAC 59.998 43.478 0.00 0.00 0.00 3.82
2634 4720 3.202097 TCATCTTCACGAGTTTTGCACA 58.798 40.909 0.00 0.00 0.00 4.57
2635 4721 3.878086 TCATCTTCACGAGTTTTGCAC 57.122 42.857 0.00 0.00 0.00 4.57
2636 4722 4.064388 TCATCATCTTCACGAGTTTTGCA 58.936 39.130 0.00 0.00 0.00 4.08
2637 4723 4.668576 TCATCATCTTCACGAGTTTTGC 57.331 40.909 0.00 0.00 0.00 3.68
2638 4724 5.391310 CCCTTCATCATCTTCACGAGTTTTG 60.391 44.000 0.00 0.00 0.00 2.44
2639 4725 4.697352 CCCTTCATCATCTTCACGAGTTTT 59.303 41.667 0.00 0.00 0.00 2.43
2640 4726 4.256920 CCCTTCATCATCTTCACGAGTTT 58.743 43.478 0.00 0.00 0.00 2.66
2641 4727 3.261897 ACCCTTCATCATCTTCACGAGTT 59.738 43.478 0.00 0.00 0.00 3.01
2642 4728 2.834549 ACCCTTCATCATCTTCACGAGT 59.165 45.455 0.00 0.00 0.00 4.18
2643 4729 3.193263 CACCCTTCATCATCTTCACGAG 58.807 50.000 0.00 0.00 0.00 4.18
2644 4730 2.677902 GCACCCTTCATCATCTTCACGA 60.678 50.000 0.00 0.00 0.00 4.35
2645 4731 1.667724 GCACCCTTCATCATCTTCACG 59.332 52.381 0.00 0.00 0.00 4.35
2646 4732 1.667724 CGCACCCTTCATCATCTTCAC 59.332 52.381 0.00 0.00 0.00 3.18
2647 4733 1.407299 CCGCACCCTTCATCATCTTCA 60.407 52.381 0.00 0.00 0.00 3.02
2648 4734 1.303309 CCGCACCCTTCATCATCTTC 58.697 55.000 0.00 0.00 0.00 2.87
2649 4735 0.749454 GCCGCACCCTTCATCATCTT 60.749 55.000 0.00 0.00 0.00 2.40
2650 4736 1.153086 GCCGCACCCTTCATCATCT 60.153 57.895 0.00 0.00 0.00 2.90
2651 4737 2.189499 GGCCGCACCCTTCATCATC 61.189 63.158 0.00 0.00 0.00 2.92
2652 4738 2.124151 GGCCGCACCCTTCATCAT 60.124 61.111 0.00 0.00 0.00 2.45
2653 4739 3.645660 TGGCCGCACCCTTCATCA 61.646 61.111 0.00 0.00 37.83 3.07
2654 4740 3.134127 GTGGCCGCACCCTTCATC 61.134 66.667 12.58 0.00 37.83 2.92
2655 4741 4.740822 GGTGGCCGCACCCTTCAT 62.741 66.667 19.98 0.00 39.27 2.57
2660 4746 4.778143 CTAGTGGTGGCCGCACCC 62.778 72.222 19.98 6.11 44.38 4.61
2661 4747 1.968050 ATACTAGTGGTGGCCGCACC 61.968 60.000 19.98 12.34 45.20 5.01
2662 4748 0.529992 GATACTAGTGGTGGCCGCAC 60.530 60.000 19.98 14.13 36.32 5.34
2663 4749 0.973496 TGATACTAGTGGTGGCCGCA 60.973 55.000 19.98 0.96 36.32 5.69
2664 4750 0.177141 TTGATACTAGTGGTGGCCGC 59.823 55.000 8.12 8.12 0.00 6.53
2665 4751 1.480954 ACTTGATACTAGTGGTGGCCG 59.519 52.381 5.39 0.00 0.00 6.13
2666 4752 3.055385 TCAACTTGATACTAGTGGTGGCC 60.055 47.826 5.39 0.00 0.00 5.36
2667 4753 4.202245 TCAACTTGATACTAGTGGTGGC 57.798 45.455 5.39 0.00 0.00 5.01
2668 4754 5.977635 TGATCAACTTGATACTAGTGGTGG 58.022 41.667 5.39 0.00 37.20 4.61
2669 4755 6.313905 GGTTGATCAACTTGATACTAGTGGTG 59.686 42.308 31.81 0.00 37.20 4.17
2670 4756 6.407202 GGTTGATCAACTTGATACTAGTGGT 58.593 40.000 31.81 0.00 37.20 4.16
2671 4757 5.817816 GGGTTGATCAACTTGATACTAGTGG 59.182 44.000 31.81 0.00 37.20 4.00
2672 4758 6.406370 TGGGTTGATCAACTTGATACTAGTG 58.594 40.000 31.81 0.00 37.20 2.74
2673 4759 6.620877 TGGGTTGATCAACTTGATACTAGT 57.379 37.500 31.81 0.00 37.20 2.57
2674 4760 6.037610 GCTTGGGTTGATCAACTTGATACTAG 59.962 42.308 31.81 21.11 37.20 2.57
2675 4761 5.880332 GCTTGGGTTGATCAACTTGATACTA 59.120 40.000 31.81 13.79 37.20 1.82
2676 4762 4.702131 GCTTGGGTTGATCAACTTGATACT 59.298 41.667 31.81 0.00 37.20 2.12
2677 4763 4.437390 CGCTTGGGTTGATCAACTTGATAC 60.437 45.833 31.81 17.39 37.20 2.24
2678 4764 3.689161 CGCTTGGGTTGATCAACTTGATA 59.311 43.478 31.81 14.89 37.20 2.15
2679 4765 2.489329 CGCTTGGGTTGATCAACTTGAT 59.511 45.455 31.81 3.80 40.34 2.57
2680 4766 1.879380 CGCTTGGGTTGATCAACTTGA 59.121 47.619 31.81 18.85 40.94 3.02
2681 4767 1.608590 ACGCTTGGGTTGATCAACTTG 59.391 47.619 31.81 21.08 40.94 3.16
2682 4768 1.981256 ACGCTTGGGTTGATCAACTT 58.019 45.000 31.81 10.07 40.94 2.66
2683 4769 1.981256 AACGCTTGGGTTGATCAACT 58.019 45.000 31.81 12.58 40.94 3.16
2691 4777 1.178276 TGTTCAACAACGCTTGGGTT 58.822 45.000 0.00 0.00 34.95 4.11
2692 4778 1.134175 CTTGTTCAACAACGCTTGGGT 59.866 47.619 0.00 0.00 33.96 4.51
2693 4779 1.535860 CCTTGTTCAACAACGCTTGGG 60.536 52.381 0.00 0.00 33.96 4.12
2694 4780 1.838913 CCTTGTTCAACAACGCTTGG 58.161 50.000 0.00 0.00 33.96 3.61
2695 4781 1.199624 GCCTTGTTCAACAACGCTTG 58.800 50.000 14.82 0.00 37.23 4.01
2696 4782 0.102300 GGCCTTGTTCAACAACGCTT 59.898 50.000 19.57 0.00 39.17 4.68
2697 4783 0.751643 AGGCCTTGTTCAACAACGCT 60.752 50.000 19.57 7.11 39.17 5.07
2698 4784 0.102300 AAGGCCTTGTTCAACAACGC 59.898 50.000 19.73 13.99 38.70 4.84
2699 4785 1.676006 AGAAGGCCTTGTTCAACAACG 59.324 47.619 26.25 0.00 33.96 4.10
2700 4786 3.447742 CAAGAAGGCCTTGTTCAACAAC 58.552 45.455 26.25 4.63 45.52 3.32
2701 4787 3.799281 CAAGAAGGCCTTGTTCAACAA 57.201 42.857 26.25 2.24 45.52 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.