Multiple sequence alignment - TraesCS6B01G136400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G136400 chr6B 100.000 3672 0 0 3462 7133 133844274 133847945 0.000000e+00 6782.0
1 TraesCS6B01G136400 chr6B 100.000 3148 0 0 1 3148 133840813 133843960 0.000000e+00 5814.0
2 TraesCS6B01G136400 chr6B 91.840 576 23 14 6574 7133 219571845 219572412 0.000000e+00 782.0
3 TraesCS6B01G136400 chr6D 92.838 3002 149 24 3526 6483 60134277 60137256 0.000000e+00 4292.0
4 TraesCS6B01G136400 chr6D 91.717 1497 85 27 470 1947 60131152 60132628 0.000000e+00 2041.0
5 TraesCS6B01G136400 chr6D 84.069 1224 83 31 1998 3148 60132624 60133808 0.000000e+00 1077.0
6 TraesCS6B01G136400 chr6D 83.710 442 61 8 1 440 60130271 60130703 2.400000e-109 407.0
7 TraesCS6B01G136400 chr6D 78.700 446 50 22 1997 2440 60133442 60133844 9.180000e-64 255.0
8 TraesCS6B01G136400 chr6A 91.056 3164 170 45 3464 6579 76627718 76630816 0.000000e+00 4170.0
9 TraesCS6B01G136400 chr6A 89.062 1408 90 31 575 1947 76625202 76626580 0.000000e+00 1688.0
10 TraesCS6B01G136400 chr6A 83.287 712 45 28 2471 3148 76627005 76627676 7.970000e-164 588.0
11 TraesCS6B01G136400 chr6A 88.942 416 26 7 1998 2410 76626576 76626974 4.970000e-136 496.0
12 TraesCS6B01G136400 chr6A 81.690 568 74 15 6585 7133 333799841 333800397 5.080000e-121 446.0
13 TraesCS6B01G136400 chr6A 84.231 260 34 4 6814 7067 11066975 11066717 5.530000e-61 246.0
14 TraesCS6B01G136400 chr6A 85.232 237 23 5 3483 3716 76626990 76627217 4.300000e-57 233.0
15 TraesCS6B01G136400 chr3B 89.242 567 39 12 6581 7133 825841125 825840567 0.000000e+00 689.0
16 TraesCS6B01G136400 chr3B 77.739 575 85 32 6580 7133 660036312 660035760 5.370000e-81 313.0
17 TraesCS6B01G136400 chr2A 82.373 573 68 22 6581 7133 611333498 611332939 1.080000e-127 468.0
18 TraesCS6B01G136400 chr2A 89.831 59 6 0 1944 2002 652869391 652869333 7.670000e-10 76.8
19 TraesCS6B01G136400 chr4B 81.786 571 73 21 6581 7133 563782513 563781956 3.920000e-122 449.0
20 TraesCS6B01G136400 chr4B 85.714 126 14 4 6580 6703 10703896 10703773 5.810000e-26 130.0
21 TraesCS6B01G136400 chr4B 92.424 66 4 1 6580 6645 139770240 139770304 7.620000e-15 93.5
22 TraesCS6B01G136400 chr5D 83.444 453 48 18 6699 7132 468682701 468683145 5.190000e-106 396.0
23 TraesCS6B01G136400 chr5D 84.848 99 10 3 6585 6683 468657263 468657356 2.120000e-15 95.3
24 TraesCS6B01G136400 chr2D 78.783 575 81 30 6580 7133 104547239 104546685 1.470000e-91 348.0
25 TraesCS6B01G136400 chr7B 82.083 240 32 7 6836 7067 651883560 651883324 2.030000e-45 195.0
26 TraesCS6B01G136400 chr5A 91.667 60 3 1 1941 2000 573621506 573621449 1.650000e-11 82.4
27 TraesCS6B01G136400 chr3D 86.111 72 7 3 1936 2006 42316869 42316938 2.760000e-09 75.0
28 TraesCS6B01G136400 chr3D 86.567 67 9 0 1943 2009 547418367 547418301 2.760000e-09 75.0
29 TraesCS6B01G136400 chr3D 81.928 83 11 4 1943 2021 564659456 564659374 4.620000e-07 67.6
30 TraesCS6B01G136400 chr7D 84.416 77 8 1 1940 2012 613910443 613910519 9.930000e-09 73.1
31 TraesCS6B01G136400 chr2B 87.500 64 7 1 1943 2006 695378389 695378451 9.930000e-09 73.1
32 TraesCS6B01G136400 chr2B 87.097 62 5 2 1944 2002 516729484 516729545 4.620000e-07 67.6
33 TraesCS6B01G136400 chr4D 86.885 61 7 1 1944 2003 3694899 3694959 4.620000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G136400 chr6B 133840813 133847945 7132 False 6298.0 6782 100.0000 1 7133 2 chr6B.!!$F2 7132
1 TraesCS6B01G136400 chr6B 219571845 219572412 567 False 782.0 782 91.8400 6574 7133 1 chr6B.!!$F1 559
2 TraesCS6B01G136400 chr6D 60130271 60137256 6985 False 1614.4 4292 86.2068 1 6483 5 chr6D.!!$F1 6482
3 TraesCS6B01G136400 chr6A 76625202 76630816 5614 False 1435.0 4170 87.5158 575 6579 5 chr6A.!!$F2 6004
4 TraesCS6B01G136400 chr6A 333799841 333800397 556 False 446.0 446 81.6900 6585 7133 1 chr6A.!!$F1 548
5 TraesCS6B01G136400 chr3B 825840567 825841125 558 True 689.0 689 89.2420 6581 7133 1 chr3B.!!$R2 552
6 TraesCS6B01G136400 chr3B 660035760 660036312 552 True 313.0 313 77.7390 6580 7133 1 chr3B.!!$R1 553
7 TraesCS6B01G136400 chr2A 611332939 611333498 559 True 468.0 468 82.3730 6581 7133 1 chr2A.!!$R1 552
8 TraesCS6B01G136400 chr4B 563781956 563782513 557 True 449.0 449 81.7860 6581 7133 1 chr4B.!!$R2 552
9 TraesCS6B01G136400 chr2D 104546685 104547239 554 True 348.0 348 78.7830 6580 7133 1 chr2D.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 1328 0.035458 CTCCACCGCTCCTCTTGTTT 59.965 55.000 0.00 0.0 0.00 2.83 F
1803 2264 0.244450 CACGGCATTGGCAAGAACAT 59.756 50.000 11.10 0.0 43.71 2.71 F
2561 3067 0.327924 CCCTTCATGTACAGGGCACA 59.672 55.000 7.81 0.0 43.69 4.57 F
2562 3068 1.271871 CCCTTCATGTACAGGGCACAA 60.272 52.381 7.81 0.0 43.69 3.33 F
2563 3069 1.812571 CCTTCATGTACAGGGCACAAC 59.187 52.381 7.81 0.0 0.00 3.32 F
4079 4736 0.463620 AATTTGGCCACAAGCACGTT 59.536 45.000 3.88 0.0 46.50 3.99 F
5840 6530 0.179032 ATCGCATATGTTTCCCCGCA 60.179 50.000 4.29 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2410 2885 0.253044 TTCTAGCCCATGACCAGTGC 59.747 55.000 0.00 0.0 0.00 4.40 R
3129 3678 1.219124 GAGCAGCCAACCATCGAGA 59.781 57.895 0.00 0.0 0.00 4.04 R
3823 4479 0.318360 CGTGTCTGTGCCTTGTACGA 60.318 55.000 0.00 0.0 32.36 3.43 R
4015 4671 0.810031 GCTTTAGCCGCGAAGATGGA 60.810 55.000 8.23 0.0 34.31 3.41 R
4508 5186 0.811281 GGGTTCGAATCCTGGCAAAG 59.189 55.000 20.59 0.0 0.00 2.77 R
6054 6747 1.376466 CTGGAACCACCTGTCCCAG 59.624 63.158 0.00 0.0 38.48 4.45 R
6660 7370 1.967319 TGCTGGAGTCTGTTTTGGAC 58.033 50.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.310543 CGGAGAGAAGAGGAGATGCG 59.689 60.000 0.00 0.00 0.00 4.73
33 34 4.760047 GATGCGAGGTGGCGGTGT 62.760 66.667 0.00 0.00 35.06 4.16
56 57 0.106967 GAGAGGAGATGGGTTTGGCC 60.107 60.000 0.00 0.00 0.00 5.36
59 60 3.140814 GAGATGGGTTTGGCCGCC 61.141 66.667 1.04 1.04 38.44 6.13
60 61 3.936772 GAGATGGGTTTGGCCGCCA 62.937 63.158 8.43 8.43 38.44 5.69
62 63 2.759560 ATGGGTTTGGCCGCCATC 60.760 61.111 14.30 9.63 38.44 3.51
63 64 3.598747 ATGGGTTTGGCCGCCATCA 62.599 57.895 14.30 10.02 38.44 3.07
78 79 2.683362 GCCATCACCTACCTGCTTAAAC 59.317 50.000 0.00 0.00 0.00 2.01
80 81 3.941483 CCATCACCTACCTGCTTAAACAG 59.059 47.826 0.00 0.00 37.42 3.16
89 90 1.657556 GCTTAAACAGCCGGTGCAA 59.342 52.632 1.90 0.00 43.65 4.08
124 125 0.885196 TTTAATGCGGCACAAGGACC 59.115 50.000 4.03 0.00 0.00 4.46
132 133 2.743718 CACAAGGACCGGAGCAGT 59.256 61.111 9.46 0.00 0.00 4.40
138 139 0.968393 AGGACCGGAGCAGTCTTCTC 60.968 60.000 9.46 0.00 34.56 2.87
140 141 1.303398 ACCGGAGCAGTCTTCTCGA 60.303 57.895 9.46 0.00 0.00 4.04
144 145 0.736053 GGAGCAGTCTTCTCGATCGT 59.264 55.000 15.94 0.00 0.00 3.73
145 146 1.268335 GGAGCAGTCTTCTCGATCGTC 60.268 57.143 15.94 0.59 0.00 4.20
147 148 0.097325 GCAGTCTTCTCGATCGTCGT 59.903 55.000 15.94 0.00 41.35 4.34
158 159 0.584054 GATCGTCGTGTTCGCATTGC 60.584 55.000 0.00 0.00 36.96 3.56
160 161 1.788203 CGTCGTGTTCGCATTGCAC 60.788 57.895 9.69 0.64 36.96 4.57
161 162 1.278337 GTCGTGTTCGCATTGCACA 59.722 52.632 9.69 3.53 36.96 4.57
162 163 0.316607 GTCGTGTTCGCATTGCACAA 60.317 50.000 9.69 0.00 36.96 3.33
163 164 0.316607 TCGTGTTCGCATTGCACAAC 60.317 50.000 9.69 10.90 36.96 3.32
164 165 1.587457 CGTGTTCGCATTGCACAACG 61.587 55.000 9.69 8.80 33.70 4.10
165 166 0.591236 GTGTTCGCATTGCACAACGT 60.591 50.000 9.69 0.00 33.70 3.99
166 167 0.316607 TGTTCGCATTGCACAACGTC 60.317 50.000 9.69 0.00 0.00 4.34
240 243 2.707192 CGGCGACCGTTCAAAAATG 58.293 52.632 0.00 0.00 42.73 2.32
241 244 0.727793 CGGCGACCGTTCAAAAATGG 60.728 55.000 0.00 0.00 45.64 3.16
243 246 0.594110 GCGACCGTTCAAAAATGGGA 59.406 50.000 1.78 0.00 44.63 4.37
244 247 1.664874 GCGACCGTTCAAAAATGGGAC 60.665 52.381 1.78 0.00 44.63 4.46
266 269 3.573538 CACACATCAAGGATTTTGGGTGA 59.426 43.478 14.73 0.00 42.59 4.02
292 295 1.969809 GCAGTCGAATGCGTGCATGA 61.970 55.000 23.01 0.00 38.79 3.07
293 296 0.247419 CAGTCGAATGCGTGCATGAC 60.247 55.000 10.93 11.91 36.68 3.06
319 322 2.046217 GGACCTCCGCAAACCTCC 60.046 66.667 0.00 0.00 0.00 4.30
320 323 2.593956 GGACCTCCGCAAACCTCCT 61.594 63.158 0.00 0.00 0.00 3.69
322 325 2.269241 CCTCCGCAAACCTCCTCC 59.731 66.667 0.00 0.00 0.00 4.30
323 326 2.592993 CCTCCGCAAACCTCCTCCA 61.593 63.158 0.00 0.00 0.00 3.86
342 345 1.135717 CAATTTGATGTCGGCTTGCGA 60.136 47.619 0.00 0.00 0.00 5.10
350 353 1.019278 GTCGGCTTGCGAGAATTCCA 61.019 55.000 4.70 0.00 0.00 3.53
353 356 0.179189 GGCTTGCGAGAATTCCAACG 60.179 55.000 4.70 7.32 0.00 4.10
354 357 0.179189 GCTTGCGAGAATTCCAACGG 60.179 55.000 4.70 4.52 0.00 4.44
358 361 1.740296 CGAGAATTCCAACGGGCGT 60.740 57.895 0.65 0.00 0.00 5.68
393 396 2.228914 GCCGACGACGTTGGATAGC 61.229 63.158 33.81 16.81 39.36 2.97
432 435 3.945304 ATCGGTCCGGACGTTTGCC 62.945 63.158 27.68 12.42 0.00 4.52
440 443 3.841222 GACGTTTGCCGGCAATTG 58.159 55.556 40.32 33.98 46.74 2.32
441 444 2.355718 ACGTTTGCCGGCAATTGC 60.356 55.556 40.32 29.42 42.24 3.56
444 447 1.006337 GTTTGCCGGCAATTGCAGA 60.006 52.632 40.32 23.21 44.36 4.26
446 449 1.135141 GTTTGCCGGCAATTGCAGATA 60.135 47.619 40.32 21.65 44.36 1.98
447 450 1.401761 TTGCCGGCAATTGCAGATAT 58.598 45.000 37.30 0.00 44.36 1.63
448 451 2.268762 TGCCGGCAATTGCAGATATA 57.731 45.000 30.74 11.39 44.36 0.86
449 452 2.153645 TGCCGGCAATTGCAGATATAG 58.846 47.619 30.74 14.76 44.36 1.31
450 453 1.135575 GCCGGCAATTGCAGATATAGC 60.136 52.381 30.32 20.06 44.36 2.97
451 454 2.430465 CCGGCAATTGCAGATATAGCT 58.570 47.619 30.32 0.00 44.36 3.32
452 455 2.417933 CCGGCAATTGCAGATATAGCTC 59.582 50.000 30.32 9.10 44.36 4.09
453 456 3.332919 CGGCAATTGCAGATATAGCTCT 58.667 45.455 30.32 0.00 44.36 4.09
454 457 3.124806 CGGCAATTGCAGATATAGCTCTG 59.875 47.826 30.32 0.00 44.51 3.35
455 458 3.439476 GGCAATTGCAGATATAGCTCTGG 59.561 47.826 30.32 0.00 42.42 3.86
456 459 4.321718 GCAATTGCAGATATAGCTCTGGA 58.678 43.478 25.36 0.28 42.42 3.86
457 460 4.392445 GCAATTGCAGATATAGCTCTGGAG 59.608 45.833 25.36 0.00 43.30 3.86
458 461 5.791666 CAATTGCAGATATAGCTCTGGAGA 58.208 41.667 0.00 0.00 43.30 3.71
459 462 6.408035 CAATTGCAGATATAGCTCTGGAGAT 58.592 40.000 0.00 0.00 43.30 2.75
460 463 5.402997 TTGCAGATATAGCTCTGGAGATG 57.597 43.478 0.00 0.00 43.30 2.90
461 464 3.195182 TGCAGATATAGCTCTGGAGATGC 59.805 47.826 0.00 0.00 42.42 3.91
462 465 3.734597 GCAGATATAGCTCTGGAGATGCG 60.735 52.174 0.00 0.00 42.42 4.73
463 466 2.426738 AGATATAGCTCTGGAGATGCGC 59.573 50.000 0.00 0.00 0.00 6.09
464 467 1.916506 TATAGCTCTGGAGATGCGCT 58.083 50.000 9.73 0.00 34.88 5.92
465 468 1.916506 ATAGCTCTGGAGATGCGCTA 58.083 50.000 9.73 0.00 37.56 4.26
466 469 0.955178 TAGCTCTGGAGATGCGCTAC 59.045 55.000 9.73 2.14 32.49 3.58
467 470 1.300542 GCTCTGGAGATGCGCTACC 60.301 63.158 9.73 7.36 0.00 3.18
468 471 2.021068 GCTCTGGAGATGCGCTACCA 62.021 60.000 9.73 11.70 0.00 3.25
482 904 3.243068 GCGCTACCATCCATAAAAGGTTG 60.243 47.826 0.00 0.00 35.62 3.77
499 921 6.875948 AAGGTTGATTTTATGGGTTTTTGC 57.124 33.333 0.00 0.00 0.00 3.68
500 922 5.312895 AGGTTGATTTTATGGGTTTTTGCC 58.687 37.500 0.00 0.00 0.00 4.52
504 926 7.416777 GGTTGATTTTATGGGTTTTTGCCAAAA 60.417 33.333 0.00 0.00 0.00 2.44
505 927 7.830099 TGATTTTATGGGTTTTTGCCAAAAT 57.170 28.000 3.01 0.00 34.35 1.82
507 929 9.354673 TGATTTTATGGGTTTTTGCCAAAATAA 57.645 25.926 3.01 0.00 34.35 1.40
514 936 9.665719 ATGGGTTTTTGCCAAAATAATAGTAAG 57.334 29.630 3.01 0.00 34.35 2.34
539 961 0.958382 TTGCACTGACAATACGGGCC 60.958 55.000 0.00 0.00 0.00 5.80
558 980 2.045536 CCCTGACCCTGCTTCTGC 60.046 66.667 0.00 0.00 40.20 4.26
567 989 2.019984 CCCTGCTTCTGCCATTTCTAC 58.980 52.381 0.00 0.00 38.71 2.59
578 1000 5.012664 TCTGCCATTTCTACCTGTGTCTTTA 59.987 40.000 0.00 0.00 0.00 1.85
584 1006 4.371855 TCTACCTGTGTCTTTATCTGCG 57.628 45.455 0.00 0.00 0.00 5.18
617 1040 1.605457 CGCTCTGTTTCACTGGCAGTA 60.605 52.381 21.59 2.23 0.00 2.74
665 1090 2.331451 GCGCCTTGTGTTGACCAC 59.669 61.111 0.00 0.00 44.78 4.16
672 1097 3.557054 GCCTTGTGTTGACCACTCAGATA 60.557 47.826 0.00 0.00 44.81 1.98
676 1101 4.152647 TGTGTTGACCACTCAGATAGACT 58.847 43.478 0.00 0.00 44.81 3.24
698 1136 2.666994 GCCTCCTCTCTTCGTTTTTACG 59.333 50.000 0.00 0.00 0.00 3.18
734 1173 3.455849 CCCCCTATTCTCTCTTATCCCC 58.544 54.545 0.00 0.00 0.00 4.81
852 1296 2.183555 CCCTACGTGTTCGCCTCC 59.816 66.667 0.00 0.00 41.18 4.30
863 1307 1.715862 TTCGCCTCCTCTGATCGACG 61.716 60.000 0.00 0.00 0.00 5.12
864 1308 2.026879 GCCTCCTCTGATCGACGC 59.973 66.667 0.00 0.00 0.00 5.19
868 1312 1.791103 CTCCTCTGATCGACGCCTCC 61.791 65.000 0.00 0.00 0.00 4.30
869 1313 2.121538 CCTCTGATCGACGCCTCCA 61.122 63.158 0.00 0.00 0.00 3.86
870 1314 1.064946 CTCTGATCGACGCCTCCAC 59.935 63.158 0.00 0.00 0.00 4.02
871 1315 2.105128 CTGATCGACGCCTCCACC 59.895 66.667 0.00 0.00 0.00 4.61
872 1316 3.758088 CTGATCGACGCCTCCACCG 62.758 68.421 0.00 0.00 0.00 4.94
881 1325 2.581354 CCTCCACCGCTCCTCTTG 59.419 66.667 0.00 0.00 0.00 3.02
884 1328 0.035458 CTCCACCGCTCCTCTTGTTT 59.965 55.000 0.00 0.00 0.00 2.83
888 1332 0.765510 ACCGCTCCTCTTGTTTCCTT 59.234 50.000 0.00 0.00 0.00 3.36
902 1346 3.314080 TGTTTCCTTTTACTCGGCACAAG 59.686 43.478 0.00 0.00 0.00 3.16
972 1416 0.757188 CGGAGGCAGATCTGTAGGGT 60.757 60.000 23.38 4.54 0.00 4.34
1265 1717 3.532155 GACTCCGCCTCTCCGCAT 61.532 66.667 0.00 0.00 0.00 4.73
1298 1750 1.155390 TCCACCCGTCTTCTCCAGT 59.845 57.895 0.00 0.00 0.00 4.00
1320 1772 1.884579 GATGCATCGATCCATGGCTTT 59.115 47.619 6.54 0.00 0.00 3.51
1330 1787 2.816689 TCCATGGCTTTATCACGTACG 58.183 47.619 15.01 15.01 0.00 3.67
1332 1789 3.380954 TCCATGGCTTTATCACGTACGTA 59.619 43.478 22.34 10.16 0.00 3.57
1334 1791 3.846423 TGGCTTTATCACGTACGTACA 57.154 42.857 22.34 11.25 0.00 2.90
1335 1792 3.500982 TGGCTTTATCACGTACGTACAC 58.499 45.455 22.34 6.41 0.00 2.90
1337 1794 2.036250 GCTTTATCACGTACGTACACGC 60.036 50.000 22.34 14.54 45.77 5.34
1338 1795 3.419915 CTTTATCACGTACGTACACGCT 58.580 45.455 22.34 9.32 45.77 5.07
1339 1796 2.440560 TATCACGTACGTACACGCTG 57.559 50.000 22.34 14.47 45.77 5.18
1346 1803 1.916000 GTACGTACACGCTGAATCCAC 59.084 52.381 20.67 0.00 44.43 4.02
1359 1816 0.674895 AATCCACAACCTCGCTCTGC 60.675 55.000 0.00 0.00 0.00 4.26
1360 1817 2.527951 ATCCACAACCTCGCTCTGCC 62.528 60.000 0.00 0.00 0.00 4.85
1361 1818 2.345244 CACAACCTCGCTCTGCCT 59.655 61.111 0.00 0.00 0.00 4.75
1378 1838 2.874086 TGCCTGATGATATTTCGCACAG 59.126 45.455 0.00 0.00 0.00 3.66
1390 1850 2.974698 GCACAGCAACTCGGCAGT 60.975 61.111 0.00 0.00 33.44 4.40
1415 1875 1.156645 AAGCGCGATCTGGATCTTGC 61.157 55.000 12.10 10.90 36.49 4.01
1418 1878 1.220169 CGCGATCTGGATCTTGCAGG 61.220 60.000 0.00 0.00 36.40 4.85
1419 1879 0.883814 GCGATCTGGATCTTGCAGGG 60.884 60.000 8.65 0.00 36.40 4.45
1441 1901 2.034305 CCCGGTTCTACTTGTAGGATCG 59.966 54.545 13.24 13.24 0.00 3.69
1454 1914 3.833650 TGTAGGATCGACAAACCTTGGTA 59.166 43.478 7.42 0.00 35.52 3.25
1524 1984 4.400251 ACGAATGTCCCTTTATCTCACGTA 59.600 41.667 0.00 0.00 0.00 3.57
1768 2229 1.077787 CGCCCATCCTAAGCCACAA 60.078 57.895 0.00 0.00 0.00 3.33
1774 2235 2.355756 CCATCCTAAGCCACAAATGACG 59.644 50.000 0.00 0.00 0.00 4.35
1803 2264 0.244450 CACGGCATTGGCAAGAACAT 59.756 50.000 11.10 0.00 43.71 2.71
1854 2324 8.780249 GGTGAATGTTTGTTAACTATGTGTAGT 58.220 33.333 7.22 0.00 42.93 2.73
1956 2426 7.842887 ATTATCTAAAGTACTCCCTCTGTCC 57.157 40.000 0.00 0.00 0.00 4.02
1957 2427 3.978610 TCTAAAGTACTCCCTCTGTCCC 58.021 50.000 0.00 0.00 0.00 4.46
1958 2428 2.715763 AAAGTACTCCCTCTGTCCCA 57.284 50.000 0.00 0.00 0.00 4.37
1959 2429 2.950990 AAGTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
1960 2430 4.348020 AAAGTACTCCCTCTGTCCCATA 57.652 45.455 0.00 0.00 0.00 2.74
1961 2431 4.348020 AAGTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
1962 2432 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
1963 2433 4.227197 AGTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
1964 2434 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
1965 2435 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
1966 2436 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
1967 2437 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
1968 2438 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
1969 2439 5.476983 TCCCTCTGTCCCATAATGTAAGAT 58.523 41.667 0.00 0.00 0.00 2.40
1970 2440 5.307976 TCCCTCTGTCCCATAATGTAAGATG 59.692 44.000 0.00 0.00 0.00 2.90
1971 2441 5.307976 CCCTCTGTCCCATAATGTAAGATGA 59.692 44.000 0.00 0.00 0.00 2.92
1972 2442 6.226787 CCTCTGTCCCATAATGTAAGATGAC 58.773 44.000 0.00 0.00 0.00 3.06
1973 2443 6.183361 CCTCTGTCCCATAATGTAAGATGACA 60.183 42.308 0.00 0.00 0.00 3.58
1974 2444 7.379059 TCTGTCCCATAATGTAAGATGACAT 57.621 36.000 0.00 0.00 41.92 3.06
1975 2445 7.445121 TCTGTCCCATAATGTAAGATGACATC 58.555 38.462 7.39 7.39 39.16 3.06
1976 2446 7.290948 TCTGTCCCATAATGTAAGATGACATCT 59.709 37.037 12.37 12.37 39.16 2.90
1990 2460 6.459066 AGATGACATCTTACATTATGGGACG 58.541 40.000 12.37 0.00 35.76 4.79
1991 2461 4.956085 TGACATCTTACATTATGGGACGG 58.044 43.478 0.00 0.00 0.00 4.79
1992 2462 4.651962 TGACATCTTACATTATGGGACGGA 59.348 41.667 0.00 0.00 0.00 4.69
1993 2463 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
1994 2464 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
1995 2465 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1996 2466 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2003 2473 1.002069 TGGGACGGAGGGAGTACTTA 58.998 55.000 0.00 0.00 0.00 2.24
2009 2479 5.306419 GGGACGGAGGGAGTACTTAATAAAT 59.694 44.000 0.00 0.00 0.00 1.40
2013 2483 7.046033 ACGGAGGGAGTACTTAATAAATGTTG 58.954 38.462 0.00 0.00 0.00 3.33
2037 2507 6.548622 TGTTGTCCTTAGTAACTGAGTAGTGT 59.451 38.462 0.00 0.00 37.19 3.55
2038 2508 6.570672 TGTCCTTAGTAACTGAGTAGTGTG 57.429 41.667 0.00 0.00 37.19 3.82
2039 2509 6.066690 TGTCCTTAGTAACTGAGTAGTGTGT 58.933 40.000 0.00 0.00 37.19 3.72
2040 2510 7.226441 TGTCCTTAGTAACTGAGTAGTGTGTA 58.774 38.462 0.00 0.00 37.19 2.90
2102 2572 6.478512 TTGCCCCCATTTCAGTATTATTTC 57.521 37.500 0.00 0.00 0.00 2.17
2142 2612 2.158798 GGACTTGATTACCCTACTGGCC 60.159 54.545 0.00 0.00 37.83 5.36
2169 2639 3.971032 AACACTTACTTGCACTTCTGC 57.029 42.857 0.00 0.00 44.52 4.26
2210 2680 8.812329 GCAACATTTATATTGGCATTTTTACGA 58.188 29.630 0.00 0.00 0.00 3.43
2239 2709 1.486439 GCCACGTCAATTGGTGTTTG 58.514 50.000 5.42 0.25 36.40 2.93
2245 2715 3.949113 ACGTCAATTGGTGTTTGTAGGTT 59.051 39.130 5.42 0.00 0.00 3.50
2285 2756 4.387862 CGTATAAGGTTGGATGCCGTTATC 59.612 45.833 0.00 0.00 0.00 1.75
2288 2761 4.706842 AAGGTTGGATGCCGTTATCTAT 57.293 40.909 0.00 0.00 0.00 1.98
2380 2855 1.068921 GCTGGTGCTAGCCTAGAGC 59.931 63.158 13.29 10.54 40.53 4.09
2410 2885 2.253452 GCTGCTCCGCAAACTGTG 59.747 61.111 0.00 0.00 38.41 3.66
2424 2899 2.282391 TGTGCACTGGTCATGGGC 60.282 61.111 19.41 0.00 0.00 5.36
2432 2907 3.209410 CACTGGTCATGGGCTAGAATTC 58.791 50.000 0.00 0.00 0.00 2.17
2437 2912 3.471680 GTCATGGGCTAGAATTCTCACC 58.528 50.000 12.24 14.14 0.00 4.02
2445 2920 3.492482 GCTAGAATTCTCACCTCTGCCTC 60.492 52.174 12.24 0.00 0.00 4.70
2446 2921 1.836802 AGAATTCTCACCTCTGCCTCC 59.163 52.381 0.88 0.00 0.00 4.30
2447 2922 0.915364 AATTCTCACCTCTGCCTCCC 59.085 55.000 0.00 0.00 0.00 4.30
2448 2923 0.985490 ATTCTCACCTCTGCCTCCCC 60.985 60.000 0.00 0.00 0.00 4.81
2511 3016 4.614555 TGCATTAACACATAAGAAGGCG 57.385 40.909 0.00 0.00 0.00 5.52
2512 3017 4.006989 TGCATTAACACATAAGAAGGCGT 58.993 39.130 0.00 0.00 0.00 5.68
2548 3054 0.827507 GCAAGCAGGTTTCCCCTTCA 60.828 55.000 0.00 0.00 42.73 3.02
2553 3059 2.092323 GCAGGTTTCCCCTTCATGTAC 58.908 52.381 0.00 0.00 42.73 2.90
2554 3060 2.554344 GCAGGTTTCCCCTTCATGTACA 60.554 50.000 0.00 0.00 42.73 2.90
2555 3061 3.347216 CAGGTTTCCCCTTCATGTACAG 58.653 50.000 0.33 0.00 42.73 2.74
2556 3062 2.308866 AGGTTTCCCCTTCATGTACAGG 59.691 50.000 0.00 0.00 42.73 4.00
2560 3066 3.175133 CCCTTCATGTACAGGGCAC 57.825 57.895 7.81 0.00 43.69 5.01
2561 3067 0.327924 CCCTTCATGTACAGGGCACA 59.672 55.000 7.81 0.00 43.69 4.57
2562 3068 1.271871 CCCTTCATGTACAGGGCACAA 60.272 52.381 7.81 0.00 43.69 3.33
2563 3069 1.812571 CCTTCATGTACAGGGCACAAC 59.187 52.381 7.81 0.00 0.00 3.32
2564 3070 1.812571 CTTCATGTACAGGGCACAACC 59.187 52.381 7.81 0.00 37.93 3.77
2572 3091 4.645921 GGGCACAACCGCACAAGC 62.646 66.667 0.00 0.00 40.62 4.01
2590 3109 1.883021 CCCCTTGTTCCGTTGCATC 59.117 57.895 0.00 0.00 0.00 3.91
2593 3112 2.432444 CCCTTGTTCCGTTGCATCTTA 58.568 47.619 0.00 0.00 0.00 2.10
2603 3122 4.083537 TCCGTTGCATCTTACATGAAACAC 60.084 41.667 0.00 0.00 37.40 3.32
2673 3218 3.117794 CACAAACATTCAACAGCCACAG 58.882 45.455 0.00 0.00 0.00 3.66
2677 3222 2.504367 ACATTCAACAGCCACAGGTAC 58.496 47.619 0.00 0.00 0.00 3.34
2793 3338 9.444600 TCATAAATGTCTTTGTCCTTAGTAACC 57.555 33.333 0.00 0.00 0.00 2.85
2947 3494 1.983691 CTGCCCCCAGAGATATGATGT 59.016 52.381 0.00 0.00 41.77 3.06
3015 3564 4.072131 TGTTTCTAGGTTGCACCATCTTC 58.928 43.478 7.86 0.00 41.95 2.87
3073 3622 3.399181 GGATCGGTGGGGCTGACA 61.399 66.667 0.00 0.00 34.90 3.58
3519 4174 9.382244 GCATGTAAATATGTCTCGTTAATTTCC 57.618 33.333 0.00 0.00 0.00 3.13
3555 4210 3.570550 ACATAGAGGAGGCGATACTTCAC 59.429 47.826 0.00 0.00 0.00 3.18
3591 4246 7.215719 AGCTGTTTTCCCTTATTGTAGTTTC 57.784 36.000 0.00 0.00 0.00 2.78
3592 4247 7.004691 AGCTGTTTTCCCTTATTGTAGTTTCT 58.995 34.615 0.00 0.00 0.00 2.52
3823 4479 5.279306 GGTCATCATGCCATAAATGAGCATT 60.279 40.000 18.91 0.00 42.98 3.56
3983 4639 4.262045 CGAAAAATACATTGGTAGCGTTGC 59.738 41.667 0.00 0.00 31.88 4.17
4015 4671 1.636003 GATGTTTCTCCCTGGTTCCCT 59.364 52.381 0.00 0.00 0.00 4.20
4049 4705 4.749099 GGCTAAAGCAGAGTATCATCACAG 59.251 45.833 4.07 0.00 44.36 3.66
4079 4736 0.463620 AATTTGGCCACAAGCACGTT 59.536 45.000 3.88 0.00 46.50 3.99
4103 4760 1.738099 CCTCAAACCCGCTCACGAG 60.738 63.158 0.00 0.00 43.93 4.18
4176 4833 4.574599 AAAACACTGCATCAAGAGAACC 57.425 40.909 0.00 0.00 0.00 3.62
4205 4862 8.467402 TCTTTTCTCATTCAAGAGATAACGAC 57.533 34.615 0.00 0.00 43.67 4.34
4217 4874 2.293677 AGATAACGACCGATGCGATCTT 59.706 45.455 0.00 0.00 0.00 2.40
4321 4978 3.443099 AAGCTGCAACAGTTTTTCTCC 57.557 42.857 1.02 0.00 31.14 3.71
4329 4986 7.148171 GCTGCAACAGTTTTTCTCCTCTTATAT 60.148 37.037 0.00 0.00 33.43 0.86
4427 5084 1.535462 GCGGCAGCAGTTTTTCTCTTA 59.465 47.619 3.18 0.00 44.35 2.10
4479 5157 4.429854 AGCCTAGCCAGGAAGAAAATAG 57.570 45.455 0.85 0.00 45.91 1.73
4485 5163 5.984695 AGCCAGGAAGAAAATAGGAAAAC 57.015 39.130 0.00 0.00 0.00 2.43
4508 5186 4.455877 CCGGAACAGGGAATATAAAGATGC 59.544 45.833 0.00 0.00 0.00 3.91
4623 5301 0.260816 ATCTTGGCCTGCATGATGGT 59.739 50.000 3.32 0.00 0.00 3.55
4639 5317 2.088104 TGGTGTCTGAGTTCTGACCT 57.912 50.000 14.14 0.00 42.05 3.85
4657 5335 3.574826 GACCTTATACTCCATCGAGGCTT 59.425 47.826 0.00 0.00 40.77 4.35
4661 5339 5.186021 CCTTATACTCCATCGAGGCTTGTAT 59.814 44.000 0.77 10.76 40.77 2.29
4686 5364 6.549364 TGACCTAGAAACACCAATCAAAATGT 59.451 34.615 0.00 0.00 0.00 2.71
4698 5376 1.157513 AAAATGTCACCCCCACCCC 59.842 57.895 0.00 0.00 0.00 4.95
4699 5377 1.376249 AAAATGTCACCCCCACCCCT 61.376 55.000 0.00 0.00 0.00 4.79
4703 5381 4.995058 TCACCCCCACCCCTCCAC 62.995 72.222 0.00 0.00 0.00 4.02
4860 5540 2.416747 CTTTGACCTGTCGAAGCATGA 58.583 47.619 12.98 0.00 42.29 3.07
4898 5578 4.540099 TGGAGGGTTATCTGGAAATTGTCT 59.460 41.667 0.00 0.00 0.00 3.41
4950 5630 6.893759 TGAAACGTATAAATGTGGAAGTGTG 58.106 36.000 0.00 0.00 0.00 3.82
4971 5651 3.129113 TGTGCTATGATTGTCCACATTGC 59.871 43.478 0.00 0.00 42.28 3.56
4984 5664 1.270550 CACATTGCCCCTGTCTTTCAC 59.729 52.381 0.00 0.00 0.00 3.18
5004 5684 2.697751 ACTTTCTATCTCTGGCAGCGAT 59.302 45.455 22.24 22.24 0.00 4.58
5006 5686 3.827008 TTCTATCTCTGGCAGCGATTT 57.173 42.857 23.56 5.61 0.00 2.17
5307 5997 8.752766 ATAAAATGTCTGTGCAAAGAAATCAG 57.247 30.769 10.16 0.86 0.00 2.90
5375 6065 5.450688 GCTGTGATCTTTACTCCGTCATACT 60.451 44.000 0.00 0.00 0.00 2.12
5385 6075 5.871396 ACTCCGTCATACTAATGATTGGT 57.129 39.130 0.00 0.00 43.87 3.67
5398 6088 8.451908 ACTAATGATTGGTTATAGAAACAGCC 57.548 34.615 0.00 0.00 32.60 4.85
5427 6117 3.604582 CCCAGATTTCAGTGAAGTCCTC 58.395 50.000 21.06 10.48 30.23 3.71
5464 6154 9.199645 TCATAATGAATTTGTACCAATGTCCAT 57.800 29.630 0.00 0.00 0.00 3.41
5505 6195 4.811555 TCTGGTCTGTTTTTCACAATCG 57.188 40.909 0.00 0.00 33.87 3.34
5538 6228 7.802738 TCACAGTATACCAATCGAAAACAAAG 58.197 34.615 0.00 0.00 0.00 2.77
5546 6236 4.037446 CCAATCGAAAACAAAGGAGGTTCA 59.963 41.667 0.00 0.00 0.00 3.18
5565 6255 6.937465 AGGTTCAAAGATTTAGAAGTCACTCC 59.063 38.462 0.00 0.00 0.00 3.85
5691 6381 5.118990 ACTTTGATCATTAGCATGCTACGT 58.881 37.500 26.87 15.61 0.00 3.57
5694 6384 6.769608 TTGATCATTAGCATGCTACGTTAG 57.230 37.500 26.87 14.28 0.00 2.34
5708 6398 7.966246 TGCTACGTTAGAGGTTGAAATTAAA 57.034 32.000 0.00 0.00 0.00 1.52
5739 6429 8.334632 TCTGATGTATATATTGCGTTTTGTGTG 58.665 33.333 0.00 0.00 0.00 3.82
5746 6436 2.654426 TGCGTTTTGTGTGTATGACG 57.346 45.000 0.00 0.00 0.00 4.35
5838 6528 4.755411 AGTATATCGCATATGTTTCCCCG 58.245 43.478 4.29 0.00 0.00 5.73
5840 6530 0.179032 ATCGCATATGTTTCCCCGCA 60.179 50.000 4.29 0.00 0.00 5.69
5841 6531 0.179032 TCGCATATGTTTCCCCGCAT 60.179 50.000 4.29 0.00 0.00 4.73
5878 6568 7.221452 CAGTTTGTGATTGTTTTTCCTCTTGAG 59.779 37.037 0.00 0.00 0.00 3.02
5911 6601 5.409826 GGTGATCACAAGTACTGAAGGAAAG 59.590 44.000 26.47 0.00 0.00 2.62
5959 6649 3.019564 GCCACCACATCTTATTCTTGCT 58.980 45.455 0.00 0.00 0.00 3.91
6000 6690 1.153429 GACCGTATGAGCACACCCC 60.153 63.158 0.00 0.00 0.00 4.95
6018 6710 1.475392 CCCCAAAGTGTAACACCGTCA 60.475 52.381 0.00 0.00 41.43 4.35
6054 6747 0.460722 GTAGCCCGGAGAACTCTTCC 59.539 60.000 0.73 0.00 0.00 3.46
6173 6866 3.069079 AGCTGTGTGCAGATTGAATCT 57.931 42.857 0.97 0.97 45.28 2.40
6196 6889 0.246635 CCGATCCGTATGGTCCATCC 59.753 60.000 7.92 0.00 36.30 3.51
6232 6925 5.356426 GCAACAGAATACAACCCAGTTTTT 58.644 37.500 0.00 0.00 0.00 1.94
6282 6975 7.123547 TCCCTAACAAAAACATGAATGTATCCC 59.876 37.037 0.00 0.00 40.80 3.85
6331 7024 8.910351 AAAATAGTCCTGTAATTCATCTAGCC 57.090 34.615 0.00 0.00 0.00 3.93
6345 7054 6.405278 TCATCTAGCCATGTTCGATTCTTA 57.595 37.500 0.00 0.00 0.00 2.10
6429 7139 9.715121 AATTTCTCATGTGCATCTAATTTTGTT 57.285 25.926 0.00 0.00 0.00 2.83
6438 7148 9.107177 TGTGCATCTAATTTTGTTGAAATTTGT 57.893 25.926 0.00 0.00 43.65 2.83
6458 7168 1.163420 TGAAGCACCGCATTTCGTGT 61.163 50.000 0.00 0.00 36.19 4.49
6474 7184 3.585862 TCGTGTGATTTGGCTACTTCTC 58.414 45.455 0.00 0.00 0.00 2.87
6480 7190 7.491372 CGTGTGATTTGGCTACTTCTCTTTATA 59.509 37.037 0.00 0.00 0.00 0.98
6482 7192 8.540388 TGTGATTTGGCTACTTCTCTTTATACT 58.460 33.333 0.00 0.00 0.00 2.12
6484 7194 7.987458 TGATTTGGCTACTTCTCTTTATACTGG 59.013 37.037 0.00 0.00 0.00 4.00
6485 7195 7.490657 TTTGGCTACTTCTCTTTATACTGGA 57.509 36.000 0.00 0.00 0.00 3.86
6486 7196 7.490657 TTGGCTACTTCTCTTTATACTGGAA 57.509 36.000 0.00 0.00 0.00 3.53
6487 7197 7.113658 TGGCTACTTCTCTTTATACTGGAAG 57.886 40.000 0.00 0.00 39.19 3.46
6531 7241 8.931385 AATAATATCTCAAAACATGGTTGTGC 57.069 30.769 0.00 0.00 35.83 4.57
6539 7249 7.171167 TCTCAAAACATGGTTGTGCAAAATATG 59.829 33.333 12.67 12.67 35.83 1.78
6562 7272 1.269723 GTCCACGATCTCACACTGTCA 59.730 52.381 0.00 0.00 0.00 3.58
6584 7294 2.653557 GGGGACCGCATGTTTTTCT 58.346 52.632 3.14 0.00 40.86 2.52
6585 7295 0.966179 GGGGACCGCATGTTTTTCTT 59.034 50.000 3.14 0.00 40.86 2.52
6588 7298 2.799978 GGGACCGCATGTTTTTCTTTTG 59.200 45.455 0.00 0.00 0.00 2.44
6660 7370 6.967767 CAGTAGTACATCGAAGAAACTACAGG 59.032 42.308 25.15 18.10 45.43 4.00
6795 7530 3.572255 CCACCTCCTCTGCTAAGATAGAC 59.428 52.174 0.00 0.00 0.00 2.59
6826 7595 8.803397 AACCTAAACACTAAAACAAGAGAACT 57.197 30.769 0.00 0.00 0.00 3.01
6888 7657 3.679389 ACGGTGCTTTGATCAGAATCTT 58.321 40.909 0.00 0.00 32.75 2.40
6930 7709 2.290323 GGACTTGTAACAGGGTCTGCAT 60.290 50.000 0.00 0.00 34.37 3.96
6980 7759 0.244994 CAGTCTTGCGCCAGAGTACT 59.755 55.000 17.62 6.98 0.00 2.73
7002 7781 6.354130 ACTTGTATATTAGTCCATTTGGCGT 58.646 36.000 0.00 0.00 34.44 5.68
7101 7880 4.431416 TTGTTTTCCTCTAGACCAGCAA 57.569 40.909 0.00 0.00 0.00 3.91
7124 7903 7.470424 GCAATCTGCAAAGGATAACATATTGGA 60.470 37.037 0.00 0.00 44.26 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.909610 AAACCCATCTCCTCTCGGCA 60.910 55.000 0.00 0.00 0.00 5.69
36 37 0.462759 GCCAAACCCATCTCCTCTCG 60.463 60.000 0.00 0.00 0.00 4.04
53 54 3.480133 AGGTAGGTGATGGCGGCC 61.480 66.667 13.32 13.32 0.00 6.13
56 57 0.464036 TAAGCAGGTAGGTGATGGCG 59.536 55.000 0.00 0.00 0.00 5.69
103 104 0.525761 TCCTTGTGCCGCATTAAAGC 59.474 50.000 0.00 0.00 0.00 3.51
116 117 1.122019 AAGACTGCTCCGGTCCTTGT 61.122 55.000 0.00 0.00 40.33 3.16
120 121 1.513622 GAGAAGACTGCTCCGGTCC 59.486 63.158 0.00 0.00 40.33 4.46
124 125 0.316607 CGATCGAGAAGACTGCTCCG 60.317 60.000 10.26 0.00 0.00 4.63
125 126 0.736053 ACGATCGAGAAGACTGCTCC 59.264 55.000 24.34 0.00 0.00 4.70
128 129 0.097325 ACGACGATCGAGAAGACTGC 59.903 55.000 24.34 0.00 43.74 4.40
129 130 1.128878 ACACGACGATCGAGAAGACTG 59.871 52.381 24.34 10.93 43.74 3.51
132 133 1.201888 CGAACACGACGATCGAGAAGA 60.202 52.381 24.34 0.00 43.74 2.87
138 139 0.313469 CAATGCGAACACGACGATCG 60.313 55.000 14.88 14.88 46.93 3.69
140 141 1.288419 TGCAATGCGAACACGACGAT 61.288 50.000 0.00 0.00 0.00 3.73
144 145 0.316607 GTTGTGCAATGCGAACACGA 60.317 50.000 13.08 0.00 37.11 4.35
145 146 1.587457 CGTTGTGCAATGCGAACACG 61.587 55.000 16.66 11.23 37.11 4.49
147 148 0.316607 GACGTTGTGCAATGCGAACA 60.317 50.000 16.66 7.39 0.00 3.18
158 159 2.628972 GCATTGATGCGACGTTGTG 58.371 52.632 4.37 0.00 44.67 3.33
202 205 2.542766 CACATTTATGTCGGTGTGCC 57.457 50.000 0.00 0.00 39.39 5.01
236 239 3.524095 TCCTTGATGTGTGTCCCATTT 57.476 42.857 0.00 0.00 0.00 2.32
239 242 3.524095 AAATCCTTGATGTGTGTCCCA 57.476 42.857 0.00 0.00 0.00 4.37
240 243 3.056607 CCAAAATCCTTGATGTGTGTCCC 60.057 47.826 0.00 0.00 0.00 4.46
241 244 3.056607 CCCAAAATCCTTGATGTGTGTCC 60.057 47.826 0.00 0.00 0.00 4.02
243 246 3.321682 CACCCAAAATCCTTGATGTGTGT 59.678 43.478 0.00 0.00 0.00 3.72
244 247 3.573538 TCACCCAAAATCCTTGATGTGTG 59.426 43.478 0.00 0.00 0.00 3.82
252 255 1.702957 TCGGTCTCACCCAAAATCCTT 59.297 47.619 0.00 0.00 33.75 3.36
266 269 1.153745 GCATTCGACTGCTCGGTCT 60.154 57.895 19.43 0.00 40.58 3.85
306 309 0.035056 ATTGGAGGAGGTTTGCGGAG 60.035 55.000 0.00 0.00 0.00 4.63
319 322 2.733227 GCAAGCCGACATCAAATTGGAG 60.733 50.000 0.00 0.00 0.00 3.86
320 323 1.202114 GCAAGCCGACATCAAATTGGA 59.798 47.619 0.00 0.00 0.00 3.53
322 325 1.135717 TCGCAAGCCGACATCAAATTG 60.136 47.619 0.00 0.00 41.89 2.32
323 326 1.131126 CTCGCAAGCCGACATCAAATT 59.869 47.619 0.00 0.00 41.89 1.82
342 345 1.296056 CGAACGCCCGTTGGAATTCT 61.296 55.000 11.10 0.00 38.60 2.40
373 376 0.591741 CTATCCAACGTCGTCGGCTC 60.592 60.000 7.05 0.00 41.85 4.70
375 378 2.228914 GCTATCCAACGTCGTCGGC 61.229 63.158 7.05 0.00 41.85 5.54
376 379 0.457166 TTGCTATCCAACGTCGTCGG 60.457 55.000 7.05 0.00 41.85 4.79
377 380 1.342555 TTTGCTATCCAACGTCGTCG 58.657 50.000 0.00 0.00 43.34 5.12
422 425 1.732683 CAATTGCCGGCAAACGTCC 60.733 57.895 42.74 5.06 42.24 4.79
432 435 3.124806 CAGAGCTATATCTGCAATTGCCG 59.875 47.826 26.94 20.96 40.26 5.69
440 443 3.734597 CGCATCTCCAGAGCTATATCTGC 60.735 52.174 0.00 0.00 44.47 4.26
441 444 3.734597 GCGCATCTCCAGAGCTATATCTG 60.735 52.174 0.30 0.00 45.24 2.90
444 447 2.455557 AGCGCATCTCCAGAGCTATAT 58.544 47.619 11.47 0.00 40.38 0.86
446 449 1.543802 GTAGCGCATCTCCAGAGCTAT 59.456 52.381 11.47 0.00 44.16 2.97
447 450 0.955178 GTAGCGCATCTCCAGAGCTA 59.045 55.000 11.47 0.00 42.20 3.32
448 451 1.739049 GTAGCGCATCTCCAGAGCT 59.261 57.895 11.47 0.00 44.34 4.09
449 452 1.300542 GGTAGCGCATCTCCAGAGC 60.301 63.158 11.47 0.00 0.00 4.09
450 453 0.678395 ATGGTAGCGCATCTCCAGAG 59.322 55.000 11.47 0.00 33.33 3.35
451 454 0.676184 GATGGTAGCGCATCTCCAGA 59.324 55.000 11.47 0.00 33.33 3.86
452 455 0.320247 GGATGGTAGCGCATCTCCAG 60.320 60.000 11.47 0.00 33.33 3.86
453 456 1.048160 TGGATGGTAGCGCATCTCCA 61.048 55.000 11.47 12.66 0.00 3.86
454 457 0.322975 ATGGATGGTAGCGCATCTCC 59.677 55.000 11.47 8.84 0.00 3.71
455 458 3.319137 TTATGGATGGTAGCGCATCTC 57.681 47.619 11.47 0.00 0.00 2.75
456 459 3.769739 TTTATGGATGGTAGCGCATCT 57.230 42.857 11.47 0.00 0.00 2.90
457 460 3.189287 CCTTTTATGGATGGTAGCGCATC 59.811 47.826 11.47 3.08 0.00 3.91
458 461 3.149196 CCTTTTATGGATGGTAGCGCAT 58.851 45.455 11.47 0.00 0.00 4.73
459 462 2.092646 ACCTTTTATGGATGGTAGCGCA 60.093 45.455 11.47 0.00 0.00 6.09
460 463 2.572290 ACCTTTTATGGATGGTAGCGC 58.428 47.619 0.00 0.00 0.00 5.92
461 464 4.196193 TCAACCTTTTATGGATGGTAGCG 58.804 43.478 0.00 0.00 31.77 4.26
462 465 6.715347 AATCAACCTTTTATGGATGGTAGC 57.285 37.500 0.00 0.00 31.77 3.58
490 912 9.884636 ATCTTACTATTATTTTGGCAAAAACCC 57.115 29.630 27.25 0.00 38.07 4.11
497 919 8.359642 GCAATGGATCTTACTATTATTTTGGCA 58.640 33.333 0.00 0.00 0.00 4.92
498 920 8.359642 TGCAATGGATCTTACTATTATTTTGGC 58.640 33.333 0.00 0.00 0.00 4.52
499 921 9.683069 GTGCAATGGATCTTACTATTATTTTGG 57.317 33.333 0.00 0.00 0.00 3.28
504 926 8.432013 TGTCAGTGCAATGGATCTTACTATTAT 58.568 33.333 15.06 0.00 0.00 1.28
505 927 7.791029 TGTCAGTGCAATGGATCTTACTATTA 58.209 34.615 15.06 0.00 0.00 0.98
507 929 6.239217 TGTCAGTGCAATGGATCTTACTAT 57.761 37.500 15.06 0.00 0.00 2.12
508 930 5.675684 TGTCAGTGCAATGGATCTTACTA 57.324 39.130 15.06 0.00 0.00 1.82
509 931 4.558226 TGTCAGTGCAATGGATCTTACT 57.442 40.909 15.06 0.00 0.00 2.24
510 932 5.824904 ATTGTCAGTGCAATGGATCTTAC 57.175 39.130 15.06 4.38 37.65 2.34
514 936 3.002656 CCGTATTGTCAGTGCAATGGATC 59.997 47.826 15.06 6.18 39.20 3.36
539 961 1.002868 CAGAAGCAGGGTCAGGGTG 60.003 63.158 0.00 0.00 0.00 4.61
558 980 6.037610 GCAGATAAAGACACAGGTAGAAATGG 59.962 42.308 0.00 0.00 0.00 3.16
567 989 3.369147 CACTTCGCAGATAAAGACACAGG 59.631 47.826 0.00 0.00 35.04 4.00
578 1000 2.579201 CGGACCCACTTCGCAGAT 59.421 61.111 0.00 0.00 35.04 2.90
617 1040 0.834687 TGGGACTTACGGACTGGCTT 60.835 55.000 0.00 0.00 0.00 4.35
665 1090 3.149196 GAGAGGAGGCAGTCTATCTGAG 58.851 54.545 0.00 0.00 46.27 3.35
672 1097 0.039035 ACGAAGAGAGGAGGCAGTCT 59.961 55.000 0.00 0.00 0.00 3.24
676 1101 2.930826 AAAAACGAAGAGAGGAGGCA 57.069 45.000 0.00 0.00 0.00 4.75
795 1234 2.715763 TGGTACTTCTCCCTCACCTT 57.284 50.000 0.00 0.00 0.00 3.50
838 1282 0.607217 TCAGAGGAGGCGAACACGTA 60.607 55.000 0.00 0.00 0.00 3.57
852 1296 1.064946 GTGGAGGCGTCGATCAGAG 59.935 63.158 0.00 0.00 0.00 3.35
863 1307 3.394836 AAGAGGAGCGGTGGAGGC 61.395 66.667 0.00 0.00 0.00 4.70
864 1308 1.831652 AACAAGAGGAGCGGTGGAGG 61.832 60.000 0.00 0.00 0.00 4.30
868 1312 0.035458 AGGAAACAAGAGGAGCGGTG 59.965 55.000 0.00 0.00 0.00 4.94
869 1313 0.765510 AAGGAAACAAGAGGAGCGGT 59.234 50.000 0.00 0.00 0.00 5.68
870 1314 1.897560 AAAGGAAACAAGAGGAGCGG 58.102 50.000 0.00 0.00 0.00 5.52
871 1315 4.065789 AGTAAAAGGAAACAAGAGGAGCG 58.934 43.478 0.00 0.00 0.00 5.03
872 1316 4.152580 CGAGTAAAAGGAAACAAGAGGAGC 59.847 45.833 0.00 0.00 0.00 4.70
873 1317 4.691216 CCGAGTAAAAGGAAACAAGAGGAG 59.309 45.833 0.00 0.00 0.00 3.69
874 1318 4.638304 CCGAGTAAAAGGAAACAAGAGGA 58.362 43.478 0.00 0.00 0.00 3.71
881 1325 3.852205 GCTTGTGCCGAGTAAAAGGAAAC 60.852 47.826 0.00 0.00 0.00 2.78
884 1328 1.519408 GCTTGTGCCGAGTAAAAGGA 58.481 50.000 0.00 0.00 0.00 3.36
888 1332 2.663478 CGCGCTTGTGCCGAGTAAA 61.663 57.895 5.56 0.00 35.80 2.01
972 1416 2.602676 CCCTCGCTTCCCTTTCCCA 61.603 63.158 0.00 0.00 0.00 4.37
1149 1599 2.096030 CTCCTCGTCGTCGTCGTG 59.904 66.667 11.41 9.05 38.33 4.35
1315 1767 2.527487 CGTGTACGTACGTGATAAAGCC 59.473 50.000 30.25 8.51 39.13 4.35
1320 1772 1.999024 TCAGCGTGTACGTACGTGATA 59.001 47.619 30.25 13.46 45.36 2.15
1330 1787 1.463444 GGTTGTGGATTCAGCGTGTAC 59.537 52.381 0.00 0.00 0.00 2.90
1332 1789 0.108585 AGGTTGTGGATTCAGCGTGT 59.891 50.000 0.00 0.00 0.00 4.49
1334 1791 0.670546 CGAGGTTGTGGATTCAGCGT 60.671 55.000 0.00 0.00 0.00 5.07
1335 1792 1.970917 GCGAGGTTGTGGATTCAGCG 61.971 60.000 0.00 0.00 0.00 5.18
1336 1793 0.674895 AGCGAGGTTGTGGATTCAGC 60.675 55.000 0.00 0.00 0.00 4.26
1337 1794 1.066573 AGAGCGAGGTTGTGGATTCAG 60.067 52.381 0.00 0.00 0.00 3.02
1338 1795 0.976641 AGAGCGAGGTTGTGGATTCA 59.023 50.000 0.00 0.00 0.00 2.57
1339 1796 1.363744 CAGAGCGAGGTTGTGGATTC 58.636 55.000 0.00 0.00 0.00 2.52
1346 1803 1.088340 CATCAGGCAGAGCGAGGTTG 61.088 60.000 0.00 0.00 0.00 3.77
1359 1816 2.874086 TGCTGTGCGAAATATCATCAGG 59.126 45.455 0.00 0.00 0.00 3.86
1360 1817 4.034858 AGTTGCTGTGCGAAATATCATCAG 59.965 41.667 0.00 0.00 0.00 2.90
1361 1818 3.940852 AGTTGCTGTGCGAAATATCATCA 59.059 39.130 0.00 0.00 0.00 3.07
1378 1838 2.471370 GCTTTTTAAACTGCCGAGTTGC 59.529 45.455 0.00 0.00 41.87 4.17
1390 1850 3.938963 AGATCCAGATCGCGCTTTTTAAA 59.061 39.130 5.56 0.00 42.48 1.52
1415 1875 1.078426 CAAGTAGAACCGGGCCCTG 60.078 63.158 22.43 17.38 0.00 4.45
1418 1878 0.177373 CCTACAAGTAGAACCGGGCC 59.823 60.000 6.32 0.00 35.21 5.80
1419 1879 1.188863 TCCTACAAGTAGAACCGGGC 58.811 55.000 6.32 0.00 35.21 6.13
1441 1901 2.303175 TGGCAACTACCAAGGTTTGTC 58.697 47.619 0.00 0.00 36.55 3.18
1653 2114 6.218108 ACAAGGTAGTACTATTACAGGTGC 57.782 41.667 5.75 0.00 0.00 5.01
1708 2169 1.825474 CCAGATTCACGGACAGTAGGT 59.175 52.381 0.00 0.00 0.00 3.08
1768 2229 2.602878 CCGTGTACAAGCTACGTCATT 58.397 47.619 0.00 0.00 36.17 2.57
1774 2235 1.396996 CCAATGCCGTGTACAAGCTAC 59.603 52.381 17.36 4.70 0.00 3.58
1803 2264 3.898123 GGACATCCCATCTCTGCTACTTA 59.102 47.826 0.00 0.00 34.14 2.24
1854 2324 2.363038 GGTACATAGGACATGCACGGTA 59.637 50.000 0.00 0.00 0.00 4.02
1948 2418 7.473937 ATGTCATCTTACATTATGGGACAGAGG 60.474 40.741 0.00 0.00 38.33 3.69
1949 2419 7.448420 ATGTCATCTTACATTATGGGACAGAG 58.552 38.462 0.00 0.00 38.33 3.35
1950 2420 7.290948 AGATGTCATCTTACATTATGGGACAGA 59.709 37.037 9.68 0.00 40.60 3.41
1951 2421 7.448420 AGATGTCATCTTACATTATGGGACAG 58.552 38.462 9.68 0.00 40.60 3.51
1952 2422 7.379059 AGATGTCATCTTACATTATGGGACA 57.621 36.000 9.68 0.00 41.24 4.02
1966 2436 6.459066 CGTCCCATAATGTAAGATGTCATCT 58.541 40.000 9.68 9.68 42.61 2.90
1967 2437 5.639506 CCGTCCCATAATGTAAGATGTCATC 59.360 44.000 4.52 4.52 0.00 2.92
1968 2438 5.306937 TCCGTCCCATAATGTAAGATGTCAT 59.693 40.000 0.00 0.00 0.00 3.06
1969 2439 4.651962 TCCGTCCCATAATGTAAGATGTCA 59.348 41.667 0.00 0.00 0.00 3.58
1970 2440 5.209818 TCCGTCCCATAATGTAAGATGTC 57.790 43.478 0.00 0.00 0.00 3.06
1971 2441 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
1972 2442 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
1973 2443 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
1974 2444 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1975 2445 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1976 2446 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1977 2447 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1978 2448 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1979 2449 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1980 2450 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1981 2451 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1982 2452 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1983 2453 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1984 2454 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1985 2455 2.149973 TTAAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
1986 2456 5.859205 TTTATTAAGTACTCCCTCCGTCC 57.141 43.478 0.00 0.00 0.00 4.79
1987 2457 6.814043 ACATTTATTAAGTACTCCCTCCGTC 58.186 40.000 0.00 0.00 0.00 4.79
1988 2458 6.803366 ACATTTATTAAGTACTCCCTCCGT 57.197 37.500 0.00 0.00 0.00 4.69
1989 2459 7.046033 ACAACATTTATTAAGTACTCCCTCCG 58.954 38.462 0.00 0.00 0.00 4.63
1990 2460 8.674607 CAACAACATTTATTAAGTACTCCCTCC 58.325 37.037 0.00 0.00 0.00 4.30
1991 2461 9.227777 ACAACAACATTTATTAAGTACTCCCTC 57.772 33.333 0.00 0.00 0.00 4.30
1992 2462 9.227777 GACAACAACATTTATTAAGTACTCCCT 57.772 33.333 0.00 0.00 0.00 4.20
1993 2463 8.456471 GGACAACAACATTTATTAAGTACTCCC 58.544 37.037 0.00 0.00 0.00 4.30
1994 2464 9.227777 AGGACAACAACATTTATTAAGTACTCC 57.772 33.333 0.00 0.00 0.00 3.85
2009 2479 6.229936 ACTCAGTTACTAAGGACAACAACA 57.770 37.500 0.00 0.00 0.00 3.33
2013 2483 6.862090 CACACTACTCAGTTACTAAGGACAAC 59.138 42.308 0.00 0.00 30.46 3.32
2037 2507 6.368779 AAAGCTCCTTTGGTACTACATACA 57.631 37.500 0.00 0.00 35.23 2.29
2038 2508 7.683437 AAAAAGCTCCTTTGGTACTACATAC 57.317 36.000 0.00 0.00 33.64 2.39
2040 2510 9.614792 CTATAAAAAGCTCCTTTGGTACTACAT 57.385 33.333 4.42 0.00 33.64 2.29
2084 2554 8.776061 TTTAGGGGAAATAATACTGAAATGGG 57.224 34.615 0.00 0.00 0.00 4.00
2102 2572 4.017126 GTCCAAAGAAGGTCATTTAGGGG 58.983 47.826 0.00 0.00 0.00 4.79
2142 2612 2.293399 GTGCAAGTAAGTGTTTGGAGGG 59.707 50.000 0.00 0.00 0.00 4.30
2225 2695 4.048504 GCAACCTACAAACACCAATTGAC 58.951 43.478 7.12 0.00 0.00 3.18
2239 2709 2.715737 TCAAAAATGGCGCAACCTAC 57.284 45.000 10.83 0.00 40.22 3.18
2285 2756 0.385751 ACTGATCCGACGGCACATAG 59.614 55.000 9.66 5.54 0.00 2.23
2288 2761 1.374125 CAACTGATCCGACGGCACA 60.374 57.895 9.66 10.60 0.00 4.57
2344 2819 3.311871 CCAGCTTCTATCACACATTGAGC 59.688 47.826 0.00 0.00 37.77 4.26
2349 2824 2.636830 GCACCAGCTTCTATCACACAT 58.363 47.619 0.00 0.00 37.91 3.21
2373 2848 2.829120 GCCAACTATCTAGGGCTCTAGG 59.171 54.545 20.66 7.28 42.42 3.02
2379 2854 0.761802 AGCAGCCAACTATCTAGGGC 59.238 55.000 0.00 0.00 46.77 5.19
2380 2855 1.346068 GGAGCAGCCAACTATCTAGGG 59.654 57.143 0.00 0.00 36.34 3.53
2410 2885 0.253044 TTCTAGCCCATGACCAGTGC 59.747 55.000 0.00 0.00 0.00 4.40
2424 2899 3.069443 GGAGGCAGAGGTGAGAATTCTAG 59.931 52.174 8.25 0.00 0.00 2.43
2432 2907 3.086600 GGGGGAGGCAGAGGTGAG 61.087 72.222 0.00 0.00 0.00 3.51
2447 2922 3.716195 TGACACATCAGGCGGGGG 61.716 66.667 0.00 0.00 0.00 5.40
2448 2923 2.436646 GTGACACATCAGGCGGGG 60.437 66.667 0.00 0.00 34.75 5.73
2451 2926 0.518636 CCAAAGTGACACATCAGGCG 59.481 55.000 8.59 0.00 34.75 5.52
2452 2927 1.609208 ACCAAAGTGACACATCAGGC 58.391 50.000 8.59 0.00 34.75 4.85
2453 2928 7.933577 ACATATATACCAAAGTGACACATCAGG 59.066 37.037 8.59 6.60 34.75 3.86
2454 2929 8.768019 CACATATATACCAAAGTGACACATCAG 58.232 37.037 8.59 0.00 34.75 2.90
2491 2996 4.616181 ACGCCTTCTTATGTGTTAATGC 57.384 40.909 0.00 0.00 0.00 3.56
2495 3000 6.457355 TCAAGTAACGCCTTCTTATGTGTTA 58.543 36.000 0.00 0.00 36.64 2.41
2548 3054 1.674322 GCGGTTGTGCCCTGTACAT 60.674 57.895 0.00 0.00 0.00 2.29
2553 3059 3.198236 CTTGTGCGGTTGTGCCCTG 62.198 63.158 0.00 0.00 0.00 4.45
2554 3060 2.906897 CTTGTGCGGTTGTGCCCT 60.907 61.111 0.00 0.00 0.00 5.19
2555 3061 4.645921 GCTTGTGCGGTTGTGCCC 62.646 66.667 0.00 0.00 0.00 5.36
2556 3062 4.645921 GGCTTGTGCGGTTGTGCC 62.646 66.667 0.00 0.00 40.82 5.01
2557 3063 4.645921 GGGCTTGTGCGGTTGTGC 62.646 66.667 0.00 0.00 40.82 4.57
2558 3064 3.977244 GGGGCTTGTGCGGTTGTG 61.977 66.667 0.00 0.00 40.82 3.33
2559 3065 3.731766 AAGGGGCTTGTGCGGTTGT 62.732 57.895 0.00 0.00 40.82 3.32
2560 3066 2.912025 AAGGGGCTTGTGCGGTTG 60.912 61.111 0.00 0.00 40.82 3.77
2561 3067 2.912025 CAAGGGGCTTGTGCGGTT 60.912 61.111 0.00 0.00 40.82 4.44
2572 3091 0.609131 AGATGCAACGGAACAAGGGG 60.609 55.000 0.00 0.00 0.00 4.79
2583 3102 5.119931 TGGTGTTTCATGTAAGATGCAAC 57.880 39.130 0.00 0.00 0.00 4.17
2590 3109 6.801539 ACACTGTATGGTGTTTCATGTAAG 57.198 37.500 0.00 0.00 46.71 2.34
2593 3112 6.109156 TCTACACTGTATGGTGTTTCATGT 57.891 37.500 5.59 0.00 46.71 3.21
2615 3142 7.995463 TGTTTAATTTTGTTGTAAGGTGCTC 57.005 32.000 0.00 0.00 0.00 4.26
2651 3196 1.860326 GTGGCTGTTGAATGTTTGTGC 59.140 47.619 0.00 0.00 0.00 4.57
2653 3198 2.101249 CCTGTGGCTGTTGAATGTTTGT 59.899 45.455 0.00 0.00 0.00 2.83
2654 3199 2.101249 ACCTGTGGCTGTTGAATGTTTG 59.899 45.455 0.00 0.00 0.00 2.93
2677 3222 2.227865 CGGGGTACAAAGGACATGTTTG 59.772 50.000 0.00 3.26 40.18 2.93
2790 3335 3.754965 TGGTACTACACACTACTCGGTT 58.245 45.455 0.00 0.00 0.00 4.44
2793 3338 4.456911 TCCTTTGGTACTACACACTACTCG 59.543 45.833 0.00 0.00 0.00 4.18
2863 3408 4.120589 GTCTAAACGAAGGCCATAGGAAG 58.879 47.826 5.01 0.00 0.00 3.46
2947 3494 7.791766 TCCCCCTAAAATTGCCAATATAAATGA 59.208 33.333 0.00 0.00 0.00 2.57
2986 3535 2.811431 TGCAACCTAGAAACACCAATCG 59.189 45.455 0.00 0.00 0.00 3.34
3015 3564 2.662700 GTCTGACCTTATACGCCATCG 58.337 52.381 0.00 0.00 42.43 3.84
3129 3678 1.219124 GAGCAGCCAACCATCGAGA 59.781 57.895 0.00 0.00 0.00 4.04
3461 4010 7.221452 GCTCCATGCTGACACATTAAATAAAAG 59.779 37.037 0.00 0.00 38.95 2.27
3462 4011 7.035004 GCTCCATGCTGACACATTAAATAAAA 58.965 34.615 0.00 0.00 38.95 1.52
3466 4015 4.018490 TGCTCCATGCTGACACATTAAAT 58.982 39.130 0.00 0.00 43.37 1.40
3480 4029 1.753930 TACATGCTGGTTGCTCCATG 58.246 50.000 0.00 0.00 46.12 3.66
3481 4136 2.512692 TTACATGCTGGTTGCTCCAT 57.487 45.000 0.00 0.00 46.12 3.41
3518 4173 4.577693 CCTCTATGTGTTGATGGTTGATGG 59.422 45.833 0.00 0.00 0.00 3.51
3519 4174 5.430886 TCCTCTATGTGTTGATGGTTGATG 58.569 41.667 0.00 0.00 0.00 3.07
3520 4175 5.397221 CCTCCTCTATGTGTTGATGGTTGAT 60.397 44.000 0.00 0.00 0.00 2.57
3521 4176 4.080919 CCTCCTCTATGTGTTGATGGTTGA 60.081 45.833 0.00 0.00 0.00 3.18
3522 4177 4.194640 CCTCCTCTATGTGTTGATGGTTG 58.805 47.826 0.00 0.00 0.00 3.77
3523 4178 3.370953 GCCTCCTCTATGTGTTGATGGTT 60.371 47.826 0.00 0.00 0.00 3.67
3524 4179 2.171448 GCCTCCTCTATGTGTTGATGGT 59.829 50.000 0.00 0.00 0.00 3.55
3555 4210 3.057946 GGAAAACAGCTTGCTACTTGAGG 60.058 47.826 0.00 0.00 0.00 3.86
3754 4410 2.044806 ATCCTACAGGGCGGTCATGC 62.045 60.000 0.00 0.00 35.41 4.06
3823 4479 0.318360 CGTGTCTGTGCCTTGTACGA 60.318 55.000 0.00 0.00 32.36 3.43
3871 4527 2.567985 CCTTTTGGTGTCCACGTAACT 58.432 47.619 0.00 0.00 30.78 2.24
3983 4639 5.826737 AGGGAGAAACATCTGCATCATTAAG 59.173 40.000 0.00 0.00 0.00 1.85
4015 4671 0.810031 GCTTTAGCCGCGAAGATGGA 60.810 55.000 8.23 0.00 34.31 3.41
4049 4705 1.691434 TGGCCAAATTTGTCCTCCAAC 59.309 47.619 18.44 0.58 31.20 3.77
4079 4736 2.114411 GCGGGTTTGAGGTTGGGA 59.886 61.111 0.00 0.00 0.00 4.37
4103 4760 8.610896 GCATGTAGATATTTAGAAGGCATGATC 58.389 37.037 0.00 0.00 34.79 2.92
4205 4862 0.855349 GTGTGCTAAGATCGCATCGG 59.145 55.000 0.00 0.00 39.89 4.18
4217 4874 4.469945 AGCTAGGAAATACAAGGTGTGCTA 59.530 41.667 0.00 0.00 0.00 3.49
4479 5157 1.919240 ATTCCCTGTTCCGGTTTTCC 58.081 50.000 0.00 0.00 0.00 3.13
4485 5163 4.455877 GCATCTTTATATTCCCTGTTCCGG 59.544 45.833 0.00 0.00 0.00 5.14
4508 5186 0.811281 GGGTTCGAATCCTGGCAAAG 59.189 55.000 20.59 0.00 0.00 2.77
4553 5231 1.324740 ACCGCTAGCGTGGATGGTTA 61.325 55.000 33.18 0.00 43.70 2.85
4623 5301 5.652891 GGAGTATAAGGTCAGAACTCAGACA 59.347 44.000 4.86 0.00 38.63 3.41
4639 5317 5.773176 TCATACAAGCCTCGATGGAGTATAA 59.227 40.000 3.90 0.00 38.70 0.98
4657 5335 6.367374 TGATTGGTGTTTCTAGGTCATACA 57.633 37.500 0.00 0.00 0.00 2.29
4661 5339 6.549364 ACATTTTGATTGGTGTTTCTAGGTCA 59.451 34.615 0.00 0.00 0.00 4.02
4686 5364 4.995058 GTGGAGGGGTGGGGGTGA 62.995 72.222 0.00 0.00 0.00 4.02
4783 5461 9.661563 ATGACGTTCATTTAGACTTTATTACCA 57.338 29.630 0.00 0.00 32.13 3.25
4800 5478 9.796120 ATTGTTTTTCTTTCTAAATGACGTTCA 57.204 25.926 0.00 0.00 0.00 3.18
4860 5540 3.464833 ACCCTCCATCCAGCAGAAATATT 59.535 43.478 0.00 0.00 0.00 1.28
4898 5578 3.565307 ACTTCCTTGGAAAAGCATCACA 58.435 40.909 3.54 0.00 0.00 3.58
4950 5630 3.489738 GGCAATGTGGACAATCATAGCAC 60.490 47.826 0.00 0.00 0.00 4.40
4971 5651 5.188751 AGAGATAGAAAGTGAAAGACAGGGG 59.811 44.000 0.00 0.00 0.00 4.79
4984 5664 2.879002 TCGCTGCCAGAGATAGAAAG 57.121 50.000 0.00 0.00 0.00 2.62
5015 5699 4.630111 AGGAGAGTAGATACGAGGTAACG 58.370 47.826 0.00 0.00 46.39 3.18
5075 5760 9.373603 GAGGAAAAGAATTTAGAGGTTAGAGTC 57.626 37.037 0.00 0.00 37.28 3.36
5171 5856 7.014038 TCAGAGTATCCCCTCGTATTCTTAAAC 59.986 40.741 0.00 0.00 36.56 2.01
5178 5863 3.398292 TCCTCAGAGTATCCCCTCGTATT 59.602 47.826 0.00 0.00 36.56 1.89
5182 5867 1.904287 CTCCTCAGAGTATCCCCTCG 58.096 60.000 0.00 0.00 36.56 4.63
5321 6011 4.313020 ACTCCTTGAAGAATCCAGCATT 57.687 40.909 0.00 0.00 0.00 3.56
5375 6065 6.775629 GGGGCTGTTTCTATAACCAATCATTA 59.224 38.462 0.00 0.00 0.00 1.90
5385 6075 3.767131 GGCAAAAGGGGCTGTTTCTATAA 59.233 43.478 0.00 0.00 0.00 0.98
5397 6087 1.551883 CTGAAATCTGGGCAAAAGGGG 59.448 52.381 0.00 0.00 0.00 4.79
5398 6088 2.028748 CACTGAAATCTGGGCAAAAGGG 60.029 50.000 0.00 0.00 0.00 3.95
5505 6195 6.588756 TCGATTGGTATACTGTGAAGAAACAC 59.411 38.462 2.25 0.00 40.68 3.32
5538 6228 6.937465 AGTGACTTCTAAATCTTTGAACCTCC 59.063 38.462 0.00 0.00 0.00 4.30
5609 6299 8.786826 TCAGTTATCATGGTTACTTTGTTAGG 57.213 34.615 0.00 0.00 0.00 2.69
5636 6326 3.529319 ACTTCTTCCCCAAAGGATGCTAT 59.471 43.478 0.00 0.00 46.94 2.97
5669 6359 5.663795 ACGTAGCATGCTAATGATCAAAG 57.336 39.130 28.44 11.23 35.67 2.77
5694 6384 9.171877 ACATCAGAGATCTTTAATTTCAACCTC 57.828 33.333 0.00 0.00 0.00 3.85
5708 6398 9.935241 AAAACGCAATATATACATCAGAGATCT 57.065 29.630 0.00 0.00 0.00 2.75
5725 6415 3.550561 CGTCATACACACAAAACGCAAT 58.449 40.909 0.00 0.00 0.00 3.56
5726 6416 2.975446 CGTCATACACACAAAACGCAA 58.025 42.857 0.00 0.00 0.00 4.85
5729 6419 2.559872 CTGCGTCATACACACAAAACG 58.440 47.619 0.00 0.00 0.00 3.60
5739 6429 5.237127 TCATTCAATTCATCCTGCGTCATAC 59.763 40.000 0.00 0.00 0.00 2.39
5746 6436 4.097437 TCAAGCTCATTCAATTCATCCTGC 59.903 41.667 0.00 0.00 0.00 4.85
5840 6530 5.733620 ATCACAAACTGGAATGCAAGAAT 57.266 34.783 0.00 0.00 0.00 2.40
5841 6531 5.163426 ACAATCACAAACTGGAATGCAAGAA 60.163 36.000 0.00 0.00 0.00 2.52
5878 6568 2.290323 ACTTGTGATCACCCTGGCTTAC 60.290 50.000 22.85 0.00 0.00 2.34
5911 6601 2.436824 GGAAGAAGCGGGTCAGGC 60.437 66.667 0.00 0.00 0.00 4.85
5959 6649 3.139770 AGATTTCCTAGGGCGAGGTACTA 59.860 47.826 9.46 0.00 41.55 1.82
6000 6690 2.281517 TGTGACGGTGTTACACTTTGG 58.718 47.619 15.44 5.34 35.83 3.28
6018 6710 3.383761 GCTACTTGTGCTGCAAAAATGT 58.616 40.909 2.77 3.15 36.53 2.71
6054 6747 1.376466 CTGGAACCACCTGTCCCAG 59.624 63.158 0.00 0.00 38.48 4.45
6087 6780 1.373246 CCACCATTTGTTGCTGCGG 60.373 57.895 0.00 0.00 0.00 5.69
6173 6866 1.532316 GACCATACGGATCGGGGGA 60.532 63.158 12.63 0.00 35.59 4.81
6196 6889 0.174845 CTGTTGCCAAGCCATCCATG 59.825 55.000 0.00 0.00 0.00 3.66
6232 6925 7.552687 GGATTACATACACAACAATTCTCAGGA 59.447 37.037 0.00 0.00 0.00 3.86
6282 6975 4.264253 TGAACAGCAATCAGGACTAATGG 58.736 43.478 0.00 0.00 0.00 3.16
6328 7021 4.130118 GACCATAAGAATCGAACATGGCT 58.870 43.478 11.69 0.00 39.86 4.75
6329 7022 4.130118 AGACCATAAGAATCGAACATGGC 58.870 43.478 11.69 7.00 39.86 4.40
6331 7024 5.817296 TCCAAGACCATAAGAATCGAACATG 59.183 40.000 0.00 0.00 0.00 3.21
6345 7054 2.827921 GACCATTTTGCTCCAAGACCAT 59.172 45.455 0.00 0.00 0.00 3.55
6373 7082 2.569404 AGGTCAACAAACTTGCCCAAAA 59.431 40.909 0.00 0.00 0.00 2.44
6429 7139 2.159184 TGCGGTGCTTCAACAAATTTCA 60.159 40.909 0.00 0.00 0.00 2.69
6438 7148 0.040514 CACGAAATGCGGTGCTTCAA 60.041 50.000 0.00 0.00 46.49 2.69
6458 7168 7.987458 CCAGTATAAAGAGAAGTAGCCAAATCA 59.013 37.037 0.00 0.00 0.00 2.57
6480 7190 8.757982 ATTCATCAAAAGCATATACTTCCAGT 57.242 30.769 0.00 0.00 0.00 4.00
6509 7219 6.343716 TGCACAACCATGTTTTGAGATATT 57.656 33.333 10.47 0.00 37.82 1.28
6531 7241 2.872245 AGATCGTGGACCGCATATTTTG 59.128 45.455 5.75 0.00 36.19 2.44
6539 7249 1.805945 GTGTGAGATCGTGGACCGC 60.806 63.158 0.00 0.00 36.19 5.68
6540 7250 0.456824 CAGTGTGAGATCGTGGACCG 60.457 60.000 0.00 0.00 38.13 4.79
6554 7264 1.761174 GGTCCCCACATGACAGTGT 59.239 57.895 0.00 0.00 37.82 3.55
6562 7272 0.541764 AAAACATGCGGTCCCCACAT 60.542 50.000 0.00 0.00 0.00 3.21
6581 7291 2.490902 GGGCCCTCTTCTTCCAAAAGAA 60.491 50.000 17.04 1.10 46.72 2.52
6582 7292 1.075536 GGGCCCTCTTCTTCCAAAAGA 59.924 52.381 17.04 0.00 39.78 2.52
6583 7293 1.203050 TGGGCCCTCTTCTTCCAAAAG 60.203 52.381 25.70 0.00 0.00 2.27
6584 7294 0.856982 TGGGCCCTCTTCTTCCAAAA 59.143 50.000 25.70 0.00 0.00 2.44
6585 7295 0.405585 CTGGGCCCTCTTCTTCCAAA 59.594 55.000 25.70 0.00 0.00 3.28
6588 7298 2.273776 GCTGGGCCCTCTTCTTCC 59.726 66.667 25.70 0.00 0.00 3.46
6660 7370 1.967319 TGCTGGAGTCTGTTTTGGAC 58.033 50.000 0.00 0.00 0.00 4.02
6795 7530 8.455682 TCTTGTTTTAGTGTTTAGGTTCTGTTG 58.544 33.333 0.00 0.00 0.00 3.33
6826 7595 2.149383 AGGCTGAGGAGTTGTGGCA 61.149 57.895 0.00 0.00 0.00 4.92
6980 7759 5.529430 CCACGCCAAATGGACTAATATACAA 59.471 40.000 2.98 0.00 39.87 2.41
7002 7781 8.429237 ACCAGGAATGATTTTGTATTTAACCA 57.571 30.769 0.00 0.00 0.00 3.67
7085 7864 2.169352 GCAGATTGCTGGTCTAGAGGAA 59.831 50.000 0.00 0.00 42.53 3.36
7101 7880 7.727186 ACATCCAATATGTTATCCTTTGCAGAT 59.273 33.333 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.