Multiple sequence alignment - TraesCS6B01G136100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G136100 chr6B 100.000 4376 0 0 1 4376 133359001 133354626 0.000000e+00 8082.0
1 TraesCS6B01G136100 chr6B 93.003 3173 170 21 752 3916 133438830 133441958 0.000000e+00 4582.0
2 TraesCS6B01G136100 chr6B 91.735 1101 83 3 2191 3288 133170667 133169572 0.000000e+00 1522.0
3 TraesCS6B01G136100 chr6B 90.283 741 67 2 921 1656 133328533 133327793 0.000000e+00 965.0
4 TraesCS6B01G136100 chr6B 90.755 530 40 2 1670 2193 133322521 133321995 0.000000e+00 699.0
5 TraesCS6B01G136100 chr6B 93.133 466 27 3 3914 4376 133442363 133442826 0.000000e+00 678.0
6 TraesCS6B01G136100 chr6B 91.453 234 14 1 1670 1897 133170897 133170664 2.540000e-82 316.0
7 TraesCS6B01G136100 chr6B 89.474 190 18 2 3282 3470 133167881 133167693 5.660000e-59 239.0
8 TraesCS6B01G136100 chr6B 95.276 127 6 0 802 928 133342874 133342748 7.420000e-48 202.0
9 TraesCS6B01G136100 chr6B 93.069 101 3 2 3740 3836 133167797 133167697 1.270000e-30 145.0
10 TraesCS6B01G136100 chr6A 92.530 3387 218 14 994 4376 76092109 76095464 0.000000e+00 4820.0
11 TraesCS6B01G136100 chr6A 89.535 774 72 6 1981 2748 76087496 76086726 0.000000e+00 972.0
12 TraesCS6B01G136100 chr6A 88.571 735 78 5 2741 3470 76045028 76044295 0.000000e+00 887.0
13 TraesCS6B01G136100 chr6A 91.453 468 39 1 1048 1515 76090139 76089673 3.690000e-180 641.0
14 TraesCS6B01G136100 chr6A 91.601 381 25 2 1563 1937 76089673 76089294 1.800000e-143 520.0
15 TraesCS6B01G136100 chr6A 94.037 218 7 3 262 477 616769900 616769687 4.220000e-85 326.0
16 TraesCS6B01G136100 chr6A 92.760 221 10 3 258 477 68655146 68654931 9.140000e-82 315.0
17 TraesCS6B01G136100 chr6A 82.703 370 42 14 3735 4089 76044408 76044046 4.250000e-80 309.0
18 TraesCS6B01G136100 chr6A 88.559 236 23 4 1 234 573135357 573135590 2.580000e-72 283.0
19 TraesCS6B01G136100 chr6D 90.092 2725 203 24 752 3467 59733677 59736343 0.000000e+00 3474.0
20 TraesCS6B01G136100 chr6D 91.173 2583 169 20 920 3470 59720506 59717951 0.000000e+00 3452.0
21 TraesCS6B01G136100 chr6D 86.508 378 39 9 3735 4107 59736238 59736608 5.270000e-109 405.0
22 TraesCS6B01G136100 chr6D 88.983 236 22 3 3503 3738 59744154 59744385 5.540000e-74 289.0
23 TraesCS6B01G136100 chr6D 84.689 209 13 9 713 921 59720729 59720540 1.610000e-44 191.0
24 TraesCS6B01G136100 chr6D 95.146 103 1 2 3738 3836 59718057 59717955 4.530000e-35 159.0
25 TraesCS6B01G136100 chr3B 82.144 2425 341 44 998 3376 470029582 470031960 0.000000e+00 1995.0
26 TraesCS6B01G136100 chr7D 93.391 575 32 4 1 573 630185042 630185612 0.000000e+00 846.0
27 TraesCS6B01G136100 chr7D 91.855 221 12 3 258 477 310867074 310867289 1.980000e-78 303.0
28 TraesCS6B01G136100 chr7D 92.857 42 3 0 3067 3108 382523881 382523840 1.310000e-05 62.1
29 TraesCS6B01G136100 chr2D 90.877 559 27 7 1 557 573457943 573458479 0.000000e+00 728.0
30 TraesCS6B01G136100 chr4A 93.665 221 9 3 258 477 712702477 712702261 4.220000e-85 326.0
31 TraesCS6B01G136100 chr4A 92.308 221 11 3 258 477 581103567 581103352 4.250000e-80 309.0
32 TraesCS6B01G136100 chr5A 93.213 221 10 3 258 477 43724585 43724801 1.960000e-83 320.0
33 TraesCS6B01G136100 chr1D 92.308 221 11 3 258 477 76946985 76947200 4.250000e-80 309.0
34 TraesCS6B01G136100 chr1D 80.556 252 45 4 3466 3714 234914279 234914529 1.610000e-44 191.0
35 TraesCS6B01G136100 chr7A 82.377 244 33 9 3475 3712 523370232 523370471 2.060000e-48 204.0
36 TraesCS6B01G136100 chr7A 83.732 209 31 2 1355 1561 685402434 685402227 1.240000e-45 195.0
37 TraesCS6B01G136100 chr2B 84.186 215 28 5 1352 1561 709833430 709833643 2.060000e-48 204.0
38 TraesCS6B01G136100 chr7B 81.048 248 41 6 3469 3712 583688704 583688949 4.470000e-45 193.0
39 TraesCS6B01G136100 chr7B 88.660 97 11 0 477 573 317779891 317779795 7.690000e-23 119.0
40 TraesCS6B01G136100 chr7B 92.857 42 3 0 3067 3108 376934553 376934512 1.310000e-05 62.1
41 TraesCS6B01G136100 chr4B 81.048 248 41 5 3469 3712 634157204 634157449 4.470000e-45 193.0
42 TraesCS6B01G136100 chr4B 80.645 248 42 6 3469 3712 73693743 73693988 2.080000e-43 187.0
43 TraesCS6B01G136100 chr4B 93.069 101 6 1 471 570 238169021 238169121 3.530000e-31 147.0
44 TraesCS6B01G136100 chr1B 81.124 249 39 7 3469 3712 144169261 144169506 4.470000e-45 193.0
45 TraesCS6B01G136100 chr1A 97.059 34 1 0 716 749 104579682 104579649 1.700000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G136100 chr6B 133354626 133359001 4375 True 8082.000000 8082 100.00000 1 4376 1 chr6B.!!$R4 4375
1 TraesCS6B01G136100 chr6B 133438830 133442826 3996 False 2630.000000 4582 93.06800 752 4376 2 chr6B.!!$F1 3624
2 TraesCS6B01G136100 chr6B 133327793 133328533 740 True 965.000000 965 90.28300 921 1656 1 chr6B.!!$R2 735
3 TraesCS6B01G136100 chr6B 133321995 133322521 526 True 699.000000 699 90.75500 1670 2193 1 chr6B.!!$R1 523
4 TraesCS6B01G136100 chr6B 133167693 133170897 3204 True 555.500000 1522 91.43275 1670 3836 4 chr6B.!!$R5 2166
5 TraesCS6B01G136100 chr6A 76092109 76095464 3355 False 4820.000000 4820 92.53000 994 4376 1 chr6A.!!$F1 3382
6 TraesCS6B01G136100 chr6A 76086726 76090139 3413 True 711.000000 972 90.86300 1048 2748 3 chr6A.!!$R4 1700
7 TraesCS6B01G136100 chr6A 76044046 76045028 982 True 598.000000 887 85.63700 2741 4089 2 chr6A.!!$R3 1348
8 TraesCS6B01G136100 chr6D 59733677 59736608 2931 False 1939.500000 3474 88.30000 752 4107 2 chr6D.!!$F2 3355
9 TraesCS6B01G136100 chr6D 59717951 59720729 2778 True 1267.333333 3452 90.33600 713 3836 3 chr6D.!!$R1 3123
10 TraesCS6B01G136100 chr3B 470029582 470031960 2378 False 1995.000000 1995 82.14400 998 3376 1 chr3B.!!$F1 2378
11 TraesCS6B01G136100 chr7D 630185042 630185612 570 False 846.000000 846 93.39100 1 573 1 chr7D.!!$F2 572
12 TraesCS6B01G136100 chr2D 573457943 573458479 536 False 728.000000 728 90.87700 1 557 1 chr2D.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 132 0.038343 CGTTGGGCCCTTTTCATGTG 60.038 55.000 25.70 0.0 0.00 3.21 F
605 609 0.316841 TTGCCCCTCATTTTTGTCGC 59.683 50.000 0.00 0.0 0.00 5.19 F
667 671 0.390860 GGACATGGCAGCGTCTAGAT 59.609 55.000 16.59 0.0 32.57 1.98 F
1635 1709 1.069513 ACGTTCGATCTGGGTTTCACA 59.930 47.619 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1709 0.613260 TATCAAGGCGCAAGGTGAGT 59.387 50.000 10.83 0.32 38.28 3.41 R
2452 4351 0.178861 TCCTCCTCCTCCAAGCCTTT 60.179 55.000 0.00 0.00 0.00 3.11 R
2877 4797 2.494445 CAGTGGATCACGCGGCTA 59.506 61.111 12.47 0.00 39.64 3.93 R
3619 7245 0.313672 GCCCGATTGTGTTTGCTCAA 59.686 50.000 0.00 0.00 33.41 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 5.464588 TTTCTCCCCCACATATTGATTGA 57.535 39.130 0.00 0.00 0.00 2.57
105 106 5.189180 AGTCCAGACTATCTTGGATTTTGC 58.811 41.667 0.00 0.00 40.43 3.68
130 132 0.038343 CGTTGGGCCCTTTTCATGTG 60.038 55.000 25.70 0.00 0.00 3.21
140 142 4.740334 GCCCTTTTCATGTGTGAACATGTT 60.740 41.667 11.78 11.78 43.72 2.71
167 169 2.405172 GTCTTTGACCTTGGAGACGAC 58.595 52.381 0.00 0.00 30.45 4.34
179 181 6.598064 ACCTTGGAGACGACCTTAATATTTTG 59.402 38.462 0.00 0.00 0.00 2.44
221 224 8.992073 TGTATTATAGACTATAGAAACGCACGA 58.008 33.333 6.78 0.00 0.00 4.35
236 239 2.603412 CGCACGAGCATTCTACTAGGAG 60.603 54.545 5.50 0.00 42.27 3.69
252 255 4.101077 AGGAGGGAGGAGCAGGGG 62.101 72.222 0.00 0.00 0.00 4.79
293 296 4.100189 AGAGTAAGGTGCGAGCTAAATGAT 59.900 41.667 0.00 0.00 0.00 2.45
377 381 2.153645 GTGAGTGTGACCATTGCATCA 58.846 47.619 0.00 0.00 0.00 3.07
433 437 5.584253 TTGAGGTAAGAAGAGAAGGATCG 57.416 43.478 0.00 0.00 0.00 3.69
434 438 3.954904 TGAGGTAAGAAGAGAAGGATCGG 59.045 47.826 0.00 0.00 0.00 4.18
435 439 3.955551 GAGGTAAGAAGAGAAGGATCGGT 59.044 47.826 0.00 0.00 0.00 4.69
436 440 4.354662 AGGTAAGAAGAGAAGGATCGGTT 58.645 43.478 0.00 0.00 0.00 4.44
437 441 4.160626 AGGTAAGAAGAGAAGGATCGGTTG 59.839 45.833 0.00 0.00 0.00 3.77
438 442 4.081586 GGTAAGAAGAGAAGGATCGGTTGT 60.082 45.833 0.00 0.00 0.00 3.32
439 443 4.625607 AAGAAGAGAAGGATCGGTTGTT 57.374 40.909 0.00 0.00 0.00 2.83
440 444 4.625607 AGAAGAGAAGGATCGGTTGTTT 57.374 40.909 0.00 0.00 0.00 2.83
441 445 4.319177 AGAAGAGAAGGATCGGTTGTTTG 58.681 43.478 0.00 0.00 0.00 2.93
442 446 2.427506 AGAGAAGGATCGGTTGTTTGC 58.572 47.619 0.00 0.00 0.00 3.68
443 447 2.039084 AGAGAAGGATCGGTTGTTTGCT 59.961 45.455 0.00 0.00 0.00 3.91
444 448 2.814336 GAGAAGGATCGGTTGTTTGCTT 59.186 45.455 0.00 0.00 0.00 3.91
445 449 3.222603 AGAAGGATCGGTTGTTTGCTTT 58.777 40.909 0.00 0.00 0.00 3.51
446 450 3.253432 AGAAGGATCGGTTGTTTGCTTTC 59.747 43.478 0.00 0.00 0.00 2.62
447 451 2.582052 AGGATCGGTTGTTTGCTTTCA 58.418 42.857 0.00 0.00 0.00 2.69
448 452 3.157087 AGGATCGGTTGTTTGCTTTCAT 58.843 40.909 0.00 0.00 0.00 2.57
449 453 3.057315 AGGATCGGTTGTTTGCTTTCATG 60.057 43.478 0.00 0.00 0.00 3.07
450 454 2.791383 TCGGTTGTTTGCTTTCATGG 57.209 45.000 0.00 0.00 0.00 3.66
451 455 1.339610 TCGGTTGTTTGCTTTCATGGG 59.660 47.619 0.00 0.00 0.00 4.00
452 456 1.339610 CGGTTGTTTGCTTTCATGGGA 59.660 47.619 0.00 0.00 0.00 4.37
453 457 2.223923 CGGTTGTTTGCTTTCATGGGAA 60.224 45.455 0.00 0.00 0.00 3.97
454 458 3.739519 CGGTTGTTTGCTTTCATGGGAAA 60.740 43.478 0.00 0.00 40.60 3.13
455 459 4.195416 GGTTGTTTGCTTTCATGGGAAAA 58.805 39.130 0.00 0.00 42.18 2.29
456 460 4.821260 GGTTGTTTGCTTTCATGGGAAAAT 59.179 37.500 0.00 0.00 42.18 1.82
457 461 5.049474 GGTTGTTTGCTTTCATGGGAAAATC 60.049 40.000 0.00 0.00 42.18 2.17
458 462 4.305769 TGTTTGCTTTCATGGGAAAATCG 58.694 39.130 0.00 0.00 42.18 3.34
459 463 3.591196 TTGCTTTCATGGGAAAATCGG 57.409 42.857 0.00 0.00 42.18 4.18
460 464 2.524306 TGCTTTCATGGGAAAATCGGT 58.476 42.857 0.00 0.00 42.18 4.69
461 465 2.896685 TGCTTTCATGGGAAAATCGGTT 59.103 40.909 0.00 0.00 42.18 4.44
462 466 3.253230 GCTTTCATGGGAAAATCGGTTG 58.747 45.455 0.00 0.00 42.18 3.77
463 467 3.306019 GCTTTCATGGGAAAATCGGTTGT 60.306 43.478 0.00 0.00 42.18 3.32
464 468 4.799255 GCTTTCATGGGAAAATCGGTTGTT 60.799 41.667 0.00 0.00 42.18 2.83
465 469 4.946478 TTCATGGGAAAATCGGTTGTTT 57.054 36.364 0.00 0.00 0.00 2.83
466 470 4.250116 TCATGGGAAAATCGGTTGTTTG 57.750 40.909 0.00 0.00 0.00 2.93
467 471 2.517650 TGGGAAAATCGGTTGTTTGC 57.482 45.000 0.00 0.00 0.00 3.68
468 472 2.035632 TGGGAAAATCGGTTGTTTGCT 58.964 42.857 0.00 0.00 0.00 3.91
469 473 3.223435 TGGGAAAATCGGTTGTTTGCTA 58.777 40.909 0.00 0.00 0.00 3.49
470 474 3.829601 TGGGAAAATCGGTTGTTTGCTAT 59.170 39.130 0.00 0.00 0.00 2.97
471 475 4.173256 GGGAAAATCGGTTGTTTGCTATG 58.827 43.478 0.00 0.00 0.00 2.23
472 476 4.082463 GGGAAAATCGGTTGTTTGCTATGA 60.082 41.667 0.00 0.00 0.00 2.15
473 477 5.095490 GGAAAATCGGTTGTTTGCTATGAG 58.905 41.667 0.00 0.00 0.00 2.90
474 478 5.106317 GGAAAATCGGTTGTTTGCTATGAGA 60.106 40.000 0.00 0.00 0.00 3.27
475 479 5.551760 AAATCGGTTGTTTGCTATGAGAG 57.448 39.130 0.00 0.00 0.00 3.20
476 480 3.953712 TCGGTTGTTTGCTATGAGAGA 57.046 42.857 0.00 0.00 0.00 3.10
477 481 4.471904 TCGGTTGTTTGCTATGAGAGAT 57.528 40.909 0.00 0.00 0.00 2.75
478 482 4.183865 TCGGTTGTTTGCTATGAGAGATG 58.816 43.478 0.00 0.00 0.00 2.90
479 483 4.081697 TCGGTTGTTTGCTATGAGAGATGA 60.082 41.667 0.00 0.00 0.00 2.92
480 484 4.813161 CGGTTGTTTGCTATGAGAGATGAT 59.187 41.667 0.00 0.00 0.00 2.45
481 485 5.985530 CGGTTGTTTGCTATGAGAGATGATA 59.014 40.000 0.00 0.00 0.00 2.15
482 486 6.648310 CGGTTGTTTGCTATGAGAGATGATAT 59.352 38.462 0.00 0.00 0.00 1.63
483 487 7.359849 CGGTTGTTTGCTATGAGAGATGATATG 60.360 40.741 0.00 0.00 0.00 1.78
484 488 7.443575 GGTTGTTTGCTATGAGAGATGATATGT 59.556 37.037 0.00 0.00 0.00 2.29
485 489 8.834465 GTTGTTTGCTATGAGAGATGATATGTT 58.166 33.333 0.00 0.00 0.00 2.71
486 490 8.969260 TGTTTGCTATGAGAGATGATATGTTT 57.031 30.769 0.00 0.00 0.00 2.83
487 491 9.399797 TGTTTGCTATGAGAGATGATATGTTTT 57.600 29.630 0.00 0.00 0.00 2.43
497 501 9.941664 GAGAGATGATATGTTTTTACACAATGG 57.058 33.333 0.00 0.00 0.00 3.16
498 502 9.466497 AGAGATGATATGTTTTTACACAATGGT 57.534 29.630 0.00 0.00 0.00 3.55
566 570 2.401583 TGGCAACGCATAATCACTCT 57.598 45.000 0.00 0.00 42.51 3.24
567 571 3.535280 TGGCAACGCATAATCACTCTA 57.465 42.857 0.00 0.00 42.51 2.43
568 572 3.194861 TGGCAACGCATAATCACTCTAC 58.805 45.455 0.00 0.00 42.51 2.59
569 573 3.118775 TGGCAACGCATAATCACTCTACT 60.119 43.478 0.00 0.00 42.51 2.57
570 574 3.246226 GGCAACGCATAATCACTCTACTG 59.754 47.826 0.00 0.00 0.00 2.74
571 575 3.246226 GCAACGCATAATCACTCTACTGG 59.754 47.826 0.00 0.00 0.00 4.00
572 576 4.433615 CAACGCATAATCACTCTACTGGT 58.566 43.478 0.00 0.00 0.00 4.00
573 577 4.046938 ACGCATAATCACTCTACTGGTG 57.953 45.455 0.00 0.00 36.17 4.17
574 578 3.447586 ACGCATAATCACTCTACTGGTGT 59.552 43.478 0.00 0.00 36.25 4.16
575 579 4.643334 ACGCATAATCACTCTACTGGTGTA 59.357 41.667 0.00 0.00 36.25 2.90
576 580 5.126545 ACGCATAATCACTCTACTGGTGTAA 59.873 40.000 0.00 0.00 36.25 2.41
577 581 6.183360 ACGCATAATCACTCTACTGGTGTAAT 60.183 38.462 0.00 0.00 36.25 1.89
578 582 6.701841 CGCATAATCACTCTACTGGTGTAATT 59.298 38.462 0.00 0.00 36.25 1.40
579 583 7.865889 CGCATAATCACTCTACTGGTGTAATTA 59.134 37.037 0.00 0.00 36.25 1.40
580 584 9.542462 GCATAATCACTCTACTGGTGTAATTAA 57.458 33.333 0.00 0.00 36.25 1.40
583 587 8.964476 AATCACTCTACTGGTGTAATTAATGG 57.036 34.615 0.00 0.00 36.25 3.16
584 588 7.490657 TCACTCTACTGGTGTAATTAATGGT 57.509 36.000 0.00 0.00 36.25 3.55
585 589 7.553334 TCACTCTACTGGTGTAATTAATGGTC 58.447 38.462 0.00 0.00 36.25 4.02
586 590 7.399191 TCACTCTACTGGTGTAATTAATGGTCT 59.601 37.037 0.00 0.00 36.25 3.85
587 591 8.041323 CACTCTACTGGTGTAATTAATGGTCTT 58.959 37.037 0.00 0.00 0.00 3.01
588 592 8.041323 ACTCTACTGGTGTAATTAATGGTCTTG 58.959 37.037 0.00 0.00 0.00 3.02
589 593 5.897377 ACTGGTGTAATTAATGGTCTTGC 57.103 39.130 0.00 0.00 0.00 4.01
590 594 4.705023 ACTGGTGTAATTAATGGTCTTGCC 59.295 41.667 0.00 0.00 37.90 4.52
591 595 4.020543 TGGTGTAATTAATGGTCTTGCCC 58.979 43.478 0.00 0.00 36.04 5.36
592 596 3.383505 GGTGTAATTAATGGTCTTGCCCC 59.616 47.826 0.00 0.00 36.04 5.80
593 597 4.278310 GTGTAATTAATGGTCTTGCCCCT 58.722 43.478 0.00 0.00 36.04 4.79
594 598 4.338400 GTGTAATTAATGGTCTTGCCCCTC 59.662 45.833 0.00 0.00 36.04 4.30
595 599 3.756082 AATTAATGGTCTTGCCCCTCA 57.244 42.857 0.00 0.00 36.04 3.86
596 600 3.979501 ATTAATGGTCTTGCCCCTCAT 57.020 42.857 0.00 0.00 36.04 2.90
597 601 3.756082 TTAATGGTCTTGCCCCTCATT 57.244 42.857 0.00 0.00 36.04 2.57
598 602 2.629017 AATGGTCTTGCCCCTCATTT 57.371 45.000 0.00 0.00 36.04 2.32
599 603 2.629017 ATGGTCTTGCCCCTCATTTT 57.371 45.000 0.00 0.00 36.04 1.82
600 604 2.397044 TGGTCTTGCCCCTCATTTTT 57.603 45.000 0.00 0.00 36.04 1.94
601 605 1.969923 TGGTCTTGCCCCTCATTTTTG 59.030 47.619 0.00 0.00 36.04 2.44
602 606 1.970640 GGTCTTGCCCCTCATTTTTGT 59.029 47.619 0.00 0.00 0.00 2.83
603 607 2.029020 GGTCTTGCCCCTCATTTTTGTC 60.029 50.000 0.00 0.00 0.00 3.18
604 608 1.885887 TCTTGCCCCTCATTTTTGTCG 59.114 47.619 0.00 0.00 0.00 4.35
605 609 0.316841 TTGCCCCTCATTTTTGTCGC 59.683 50.000 0.00 0.00 0.00 5.19
606 610 0.825425 TGCCCCTCATTTTTGTCGCA 60.825 50.000 0.00 0.00 0.00 5.10
607 611 0.532115 GCCCCTCATTTTTGTCGCAT 59.468 50.000 0.00 0.00 0.00 4.73
608 612 1.736696 GCCCCTCATTTTTGTCGCATG 60.737 52.381 0.00 0.00 0.00 4.06
609 613 1.632422 CCCTCATTTTTGTCGCATGC 58.368 50.000 7.91 7.91 0.00 4.06
610 614 1.067706 CCCTCATTTTTGTCGCATGCA 60.068 47.619 19.57 1.73 0.00 3.96
611 615 2.609984 CCCTCATTTTTGTCGCATGCAA 60.610 45.455 19.57 3.14 0.00 4.08
612 616 3.058450 CCTCATTTTTGTCGCATGCAAA 58.942 40.909 19.57 10.50 34.47 3.68
613 617 3.680937 CCTCATTTTTGTCGCATGCAAAT 59.319 39.130 19.57 12.40 35.99 2.32
614 618 4.201647 CCTCATTTTTGTCGCATGCAAATC 60.202 41.667 19.57 5.05 35.99 2.17
615 619 3.679025 TCATTTTTGTCGCATGCAAATCC 59.321 39.130 19.57 0.25 35.99 3.01
616 620 2.808523 TTTTGTCGCATGCAAATCCA 57.191 40.000 19.57 3.09 35.99 3.41
617 621 2.808523 TTTGTCGCATGCAAATCCAA 57.191 40.000 19.57 9.19 31.74 3.53
618 622 3.316071 TTTGTCGCATGCAAATCCAAT 57.684 38.095 19.57 0.00 31.74 3.16
619 623 4.446994 TTTGTCGCATGCAAATCCAATA 57.553 36.364 19.57 1.75 31.74 1.90
620 624 4.652421 TTGTCGCATGCAAATCCAATAT 57.348 36.364 19.57 0.00 0.00 1.28
621 625 4.652421 TGTCGCATGCAAATCCAATATT 57.348 36.364 19.57 0.00 0.00 1.28
622 626 4.361420 TGTCGCATGCAAATCCAATATTG 58.639 39.130 19.57 8.58 0.00 1.90
623 627 4.142204 TGTCGCATGCAAATCCAATATTGT 60.142 37.500 19.57 0.00 0.00 2.71
624 628 5.067023 TGTCGCATGCAAATCCAATATTGTA 59.933 36.000 19.57 0.00 0.00 2.41
625 629 5.399301 GTCGCATGCAAATCCAATATTGTAC 59.601 40.000 19.57 0.00 0.00 2.90
626 630 5.299028 TCGCATGCAAATCCAATATTGTACT 59.701 36.000 19.57 0.00 0.00 2.73
627 631 5.400188 CGCATGCAAATCCAATATTGTACTG 59.600 40.000 19.57 7.09 0.00 2.74
628 632 6.275335 GCATGCAAATCCAATATTGTACTGT 58.725 36.000 14.21 0.00 0.00 3.55
629 633 7.424803 GCATGCAAATCCAATATTGTACTGTA 58.575 34.615 14.21 6.12 0.00 2.74
630 634 7.379529 GCATGCAAATCCAATATTGTACTGTAC 59.620 37.037 14.21 10.98 0.00 2.90
631 635 7.010697 TGCAAATCCAATATTGTACTGTACG 57.989 36.000 14.25 0.00 0.00 3.67
632 636 6.819146 TGCAAATCCAATATTGTACTGTACGA 59.181 34.615 14.25 10.19 0.00 3.43
633 637 7.497579 TGCAAATCCAATATTGTACTGTACGAT 59.502 33.333 21.13 21.13 36.73 3.73
634 638 8.984764 GCAAATCCAATATTGTACTGTACGATA 58.015 33.333 23.44 23.44 38.90 2.92
641 645 8.738199 AATATTGTACTGTACGATATTGACCG 57.262 34.615 32.92 0.00 46.48 4.79
642 646 3.956233 TGTACTGTACGATATTGACCGC 58.044 45.455 12.87 0.00 0.00 5.68
643 647 3.377798 TGTACTGTACGATATTGACCGCA 59.622 43.478 12.87 0.00 0.00 5.69
644 648 3.079960 ACTGTACGATATTGACCGCAG 57.920 47.619 0.00 2.40 0.00 5.18
657 661 4.720902 CGCAGGTGGGACATGGCA 62.721 66.667 0.00 0.00 44.52 4.92
658 662 2.753043 GCAGGTGGGACATGGCAG 60.753 66.667 0.00 0.00 44.52 4.85
659 663 2.753043 CAGGTGGGACATGGCAGC 60.753 66.667 0.00 0.00 44.52 5.25
660 664 4.415150 AGGTGGGACATGGCAGCG 62.415 66.667 0.00 0.00 44.52 5.18
661 665 4.722700 GGTGGGACATGGCAGCGT 62.723 66.667 0.00 0.00 44.52 5.07
662 666 3.127533 GTGGGACATGGCAGCGTC 61.128 66.667 0.00 10.53 44.52 5.19
663 667 3.321648 TGGGACATGGCAGCGTCT 61.322 61.111 16.59 0.00 32.57 4.18
664 668 1.987306 TGGGACATGGCAGCGTCTA 60.987 57.895 16.59 6.54 32.57 2.59
665 669 1.227380 GGGACATGGCAGCGTCTAG 60.227 63.158 16.59 0.00 32.57 2.43
666 670 1.676678 GGGACATGGCAGCGTCTAGA 61.677 60.000 16.59 0.00 32.57 2.43
667 671 0.390860 GGACATGGCAGCGTCTAGAT 59.609 55.000 16.59 0.00 32.57 1.98
668 672 1.613925 GGACATGGCAGCGTCTAGATA 59.386 52.381 16.59 0.00 32.57 1.98
669 673 2.352225 GGACATGGCAGCGTCTAGATAG 60.352 54.545 16.59 0.00 32.57 2.08
670 674 2.554462 GACATGGCAGCGTCTAGATAGA 59.446 50.000 11.47 0.00 0.00 1.98
671 675 3.161067 ACATGGCAGCGTCTAGATAGAT 58.839 45.455 0.00 0.00 34.39 1.98
672 676 3.576118 ACATGGCAGCGTCTAGATAGATT 59.424 43.478 0.00 0.00 34.39 2.40
673 677 4.767409 ACATGGCAGCGTCTAGATAGATTA 59.233 41.667 0.00 0.00 34.39 1.75
674 678 5.105957 ACATGGCAGCGTCTAGATAGATTAG 60.106 44.000 0.00 0.00 34.39 1.73
675 679 3.191581 TGGCAGCGTCTAGATAGATTAGC 59.808 47.826 0.00 0.81 34.39 3.09
676 680 3.191581 GGCAGCGTCTAGATAGATTAGCA 59.808 47.826 0.00 0.00 34.70 3.49
677 681 4.321304 GGCAGCGTCTAGATAGATTAGCAA 60.321 45.833 0.00 0.00 34.70 3.91
678 682 5.406649 GCAGCGTCTAGATAGATTAGCAAT 58.593 41.667 0.00 0.00 34.70 3.56
679 683 5.866633 GCAGCGTCTAGATAGATTAGCAATT 59.133 40.000 0.00 0.00 34.70 2.32
680 684 6.367422 GCAGCGTCTAGATAGATTAGCAATTT 59.633 38.462 0.00 0.00 34.70 1.82
681 685 7.542477 GCAGCGTCTAGATAGATTAGCAATTTA 59.458 37.037 0.00 0.00 34.70 1.40
682 686 9.411801 CAGCGTCTAGATAGATTAGCAATTTAA 57.588 33.333 0.00 0.00 34.70 1.52
690 694 9.512588 AGATAGATTAGCAATTTAATCCTGTGG 57.487 33.333 6.35 0.00 39.69 4.17
691 695 9.289782 GATAGATTAGCAATTTAATCCTGTGGT 57.710 33.333 6.35 0.00 39.69 4.16
692 696 7.338800 AGATTAGCAATTTAATCCTGTGGTG 57.661 36.000 6.35 0.00 39.69 4.17
693 697 5.913137 TTAGCAATTTAATCCTGTGGTGG 57.087 39.130 0.00 0.00 0.00 4.61
694 698 4.046286 AGCAATTTAATCCTGTGGTGGA 57.954 40.909 0.00 0.00 40.82 4.02
695 699 4.019174 AGCAATTTAATCCTGTGGTGGAG 58.981 43.478 0.00 0.00 39.78 3.86
696 700 3.131046 GCAATTTAATCCTGTGGTGGAGG 59.869 47.826 0.00 0.00 39.78 4.30
697 701 4.599041 CAATTTAATCCTGTGGTGGAGGA 58.401 43.478 0.00 0.00 43.92 3.71
698 702 3.713826 TTTAATCCTGTGGTGGAGGAC 57.286 47.619 0.00 0.00 42.56 3.85
699 703 2.642171 TAATCCTGTGGTGGAGGACT 57.358 50.000 0.00 0.00 42.56 3.85
700 704 1.747444 AATCCTGTGGTGGAGGACTT 58.253 50.000 0.00 0.00 42.56 3.01
701 705 2.642171 ATCCTGTGGTGGAGGACTTA 57.358 50.000 0.00 0.00 42.56 2.24
702 706 1.938585 TCCTGTGGTGGAGGACTTAG 58.061 55.000 0.00 0.00 34.49 2.18
703 707 1.431633 TCCTGTGGTGGAGGACTTAGA 59.568 52.381 0.00 0.00 34.49 2.10
704 708 2.044492 TCCTGTGGTGGAGGACTTAGAT 59.956 50.000 0.00 0.00 34.49 1.98
705 709 2.432510 CCTGTGGTGGAGGACTTAGATC 59.567 54.545 0.00 0.00 31.48 2.75
706 710 3.370104 CTGTGGTGGAGGACTTAGATCT 58.630 50.000 0.00 0.00 0.00 2.75
707 711 3.099905 TGTGGTGGAGGACTTAGATCTG 58.900 50.000 5.18 0.00 0.00 2.90
708 712 3.245622 TGTGGTGGAGGACTTAGATCTGA 60.246 47.826 5.18 0.00 0.00 3.27
709 713 3.131400 GTGGTGGAGGACTTAGATCTGAC 59.869 52.174 5.18 0.00 0.00 3.51
710 714 3.245622 TGGTGGAGGACTTAGATCTGACA 60.246 47.826 5.18 0.00 0.00 3.58
711 715 3.964031 GGTGGAGGACTTAGATCTGACAT 59.036 47.826 5.18 0.00 0.00 3.06
716 720 6.183361 TGGAGGACTTAGATCTGACATAGCTA 60.183 42.308 5.18 0.00 0.00 3.32
729 733 8.932434 TCTGACATAGCTATTTCTCATCTAGT 57.068 34.615 18.31 3.99 0.00 2.57
773 777 2.030185 TGATTAATCGCCGAGAGCTACC 60.030 50.000 10.80 0.00 40.39 3.18
785 789 3.525545 GCTACCTCCCGTCGTCCC 61.526 72.222 0.00 0.00 0.00 4.46
799 803 1.345089 TCGTCCCGTTTTCTTCCATGA 59.655 47.619 0.00 0.00 0.00 3.07
834 838 4.718940 AAGAATATTTCGCCCAACAAGG 57.281 40.909 0.00 0.00 34.02 3.61
858 862 2.297597 ACAAGTCTCGTCTTCCTTGAGG 59.702 50.000 5.34 0.00 38.11 3.86
882 886 5.749596 AACACGATTGACTTGTTGAATGA 57.250 34.783 0.00 0.00 39.05 2.57
886 890 6.017192 ACACGATTGACTTGTTGAATGATTCA 60.017 34.615 3.29 3.29 38.04 2.57
933 971 3.331150 TGGTTGGTAGTAACTGCAATCG 58.669 45.455 0.00 0.00 0.00 3.34
941 979 3.499048 AGTAACTGCAATCGTCGTACTG 58.501 45.455 0.00 0.00 0.00 2.74
981 1020 6.503589 AGTATAGATTGAGCCTAGTTAGCG 57.496 41.667 0.00 0.00 34.64 4.26
985 1024 2.295253 TTGAGCCTAGTTAGCGCTTC 57.705 50.000 18.68 9.96 32.51 3.86
1074 1126 1.153765 CCTCGACTTCTCATGCGCA 60.154 57.895 14.96 14.96 0.00 6.09
1635 1709 1.069513 ACGTTCGATCTGGGTTTCACA 59.930 47.619 0.00 0.00 0.00 3.58
1657 1731 1.449601 ACCTTGCGCCTTGATACCG 60.450 57.895 4.18 0.00 0.00 4.02
2193 4065 2.534019 CGACAAAGGCACGTGCAGT 61.534 57.895 38.60 29.25 44.36 4.40
2694 4611 3.291101 GACGAGCCACCGCAACCTA 62.291 63.158 0.00 0.00 37.52 3.08
2877 4797 0.753479 ACCTCCATGACGAGCTCGAT 60.753 55.000 40.58 24.90 43.02 3.59
3141 5066 3.309121 GGAGGAACATGGAAATGGAGGAA 60.309 47.826 0.00 0.00 0.00 3.36
3168 5093 0.329596 AGGAGCAAACCCTGATGGAC 59.670 55.000 0.00 0.00 38.00 4.02
3228 5154 1.373570 CCATGAAAAGCGAGGAGGAC 58.626 55.000 0.00 0.00 0.00 3.85
3303 6929 2.119495 GGAGAACCTGAATCTAGGCCA 58.881 52.381 5.01 0.00 41.75 5.36
3410 7036 3.643159 TCATATCATCCAGGTCGTTCG 57.357 47.619 0.00 0.00 0.00 3.95
3413 7039 1.686325 ATCATCCAGGTCGTTCGGGG 61.686 60.000 0.00 0.00 0.00 5.73
3428 7054 2.673258 TCGGGGCATGATGAACTACTA 58.327 47.619 0.00 0.00 0.00 1.82
3445 7071 6.678568 ACTACTAGGCTATCAAATGCAGAT 57.321 37.500 0.00 0.00 0.00 2.90
3450 7076 1.665161 GCTATCAAATGCAGATGCCGC 60.665 52.381 1.72 0.00 41.18 6.53
3480 7106 3.186702 TGGAGTCGAACACATTTGTCA 57.813 42.857 0.00 0.00 33.55 3.58
3512 7138 8.671028 GCAAATGACATGCACATATAGATGATA 58.329 33.333 3.93 0.00 43.29 2.15
3619 7245 4.591072 TGGTTAAAGGGCAAAAGCATAAGT 59.409 37.500 0.00 0.00 0.00 2.24
3620 7246 5.071115 TGGTTAAAGGGCAAAAGCATAAGTT 59.929 36.000 0.00 0.00 0.00 2.66
3621 7247 5.408299 GGTTAAAGGGCAAAAGCATAAGTTG 59.592 40.000 0.00 0.00 0.00 3.16
3632 7258 4.916983 AGCATAAGTTGAGCAAACACAA 57.083 36.364 5.25 0.00 41.61 3.33
3638 7264 0.313672 TTGAGCAAACACAATCGGGC 59.686 50.000 0.00 0.00 0.00 6.13
3675 7301 4.584327 AAAACTAGCGGCAAATCAAACT 57.416 36.364 1.45 0.00 0.00 2.66
3685 7311 4.279169 CGGCAAATCAAACTGATGGGATAT 59.721 41.667 0.00 0.00 37.15 1.63
3972 8367 5.012239 AGCATCAAAAAGCATGTAGGAAGA 58.988 37.500 0.00 0.00 0.00 2.87
3978 8373 3.512033 AAGCATGTAGGAAGACGAGAC 57.488 47.619 0.00 0.00 0.00 3.36
3993 8410 2.159819 GAGACAGCTCCTTCACGGCA 62.160 60.000 0.00 0.00 35.01 5.69
4073 8493 4.044571 TGACCATCCAAAATTCTCTTCCCT 59.955 41.667 0.00 0.00 0.00 4.20
4074 8494 4.347607 ACCATCCAAAATTCTCTTCCCTG 58.652 43.478 0.00 0.00 0.00 4.45
4089 8509 3.951563 TCCCTGAGGAATTGTAATGGG 57.048 47.619 0.00 0.00 40.08 4.00
4090 8510 2.091885 TCCCTGAGGAATTGTAATGGGC 60.092 50.000 0.00 0.00 40.08 5.36
4109 8529 4.355925 GGACTCAACGTGTCCCAC 57.644 61.111 11.55 0.00 46.01 4.61
4115 8536 2.856988 AACGTGTCCCACCCCCAT 60.857 61.111 0.00 0.00 0.00 4.00
4147 8571 2.019249 TCGAGATACCACTAACCCACG 58.981 52.381 0.00 0.00 0.00 4.94
4193 8617 3.008049 GTCTTCTTTCACTCCTAGCCCAA 59.992 47.826 0.00 0.00 0.00 4.12
4196 8620 2.038557 TCTTTCACTCCTAGCCCAACAC 59.961 50.000 0.00 0.00 0.00 3.32
4246 8670 4.075793 TAGGAGCAGGGCCGGTCT 62.076 66.667 20.87 12.34 33.84 3.85
4256 8680 0.253327 GGGCCGGTCTTGAGAATTCT 59.747 55.000 7.95 7.95 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.693083 GCTATCTTCAACGCGCGGTT 61.693 55.000 35.22 21.99 40.22 4.44
72 73 6.882768 AGATAGTCTGGACTCCTTCAAATT 57.117 37.500 6.52 0.00 42.54 1.82
130 132 2.755650 AGACCGTCTGAACATGTTCAC 58.244 47.619 32.36 23.44 43.90 3.18
197 200 8.173775 GCTCGTGCGTTTCTATAGTCTATAATA 58.826 37.037 0.00 0.00 0.00 0.98
205 208 2.933495 TGCTCGTGCGTTTCTATAGT 57.067 45.000 4.84 0.00 43.34 2.12
221 224 2.792370 TCCCTCCTCCTAGTAGAATGCT 59.208 50.000 0.00 0.00 33.55 3.79
274 277 3.871006 CACATCATTTAGCTCGCACCTTA 59.129 43.478 0.00 0.00 0.00 2.69
377 381 0.463204 CACCCTCTCACTCATCGCAT 59.537 55.000 0.00 0.00 0.00 4.73
411 415 4.402793 CCGATCCTTCTCTTCTTACCTCAA 59.597 45.833 0.00 0.00 0.00 3.02
412 416 3.954904 CCGATCCTTCTCTTCTTACCTCA 59.045 47.826 0.00 0.00 0.00 3.86
413 417 3.955551 ACCGATCCTTCTCTTCTTACCTC 59.044 47.826 0.00 0.00 0.00 3.85
423 427 2.427506 AGCAAACAACCGATCCTTCTC 58.572 47.619 0.00 0.00 0.00 2.87
424 428 2.568623 AGCAAACAACCGATCCTTCT 57.431 45.000 0.00 0.00 0.00 2.85
425 429 3.004315 TGAAAGCAAACAACCGATCCTTC 59.996 43.478 0.00 0.00 0.00 3.46
426 430 2.955660 TGAAAGCAAACAACCGATCCTT 59.044 40.909 0.00 0.00 0.00 3.36
427 431 2.582052 TGAAAGCAAACAACCGATCCT 58.418 42.857 0.00 0.00 0.00 3.24
428 432 3.244976 CATGAAAGCAAACAACCGATCC 58.755 45.455 0.00 0.00 0.00 3.36
429 433 3.244976 CCATGAAAGCAAACAACCGATC 58.755 45.455 0.00 0.00 0.00 3.69
430 434 2.029110 CCCATGAAAGCAAACAACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
431 435 1.339610 CCCATGAAAGCAAACAACCGA 59.660 47.619 0.00 0.00 0.00 4.69
432 436 1.339610 TCCCATGAAAGCAAACAACCG 59.660 47.619 0.00 0.00 0.00 4.44
433 437 3.467374 TTCCCATGAAAGCAAACAACC 57.533 42.857 0.00 0.00 0.00 3.77
434 438 5.333263 CGATTTTCCCATGAAAGCAAACAAC 60.333 40.000 0.00 0.00 41.31 3.32
435 439 4.749099 CGATTTTCCCATGAAAGCAAACAA 59.251 37.500 0.00 0.00 41.31 2.83
436 440 4.305769 CGATTTTCCCATGAAAGCAAACA 58.694 39.130 0.00 0.00 41.31 2.83
437 441 3.679502 CCGATTTTCCCATGAAAGCAAAC 59.320 43.478 0.00 0.00 41.31 2.93
438 442 3.323403 ACCGATTTTCCCATGAAAGCAAA 59.677 39.130 0.00 0.00 41.31 3.68
439 443 2.896685 ACCGATTTTCCCATGAAAGCAA 59.103 40.909 0.00 0.00 41.31 3.91
440 444 2.524306 ACCGATTTTCCCATGAAAGCA 58.476 42.857 0.00 0.00 41.31 3.91
441 445 3.253230 CAACCGATTTTCCCATGAAAGC 58.747 45.455 0.00 0.00 41.31 3.51
442 446 4.519540 ACAACCGATTTTCCCATGAAAG 57.480 40.909 0.00 0.00 41.31 2.62
443 447 4.946478 AACAACCGATTTTCCCATGAAA 57.054 36.364 0.00 0.00 38.69 2.69
444 448 4.626042 CAAACAACCGATTTTCCCATGAA 58.374 39.130 0.00 0.00 0.00 2.57
445 449 3.553922 GCAAACAACCGATTTTCCCATGA 60.554 43.478 0.00 0.00 0.00 3.07
446 450 2.736192 GCAAACAACCGATTTTCCCATG 59.264 45.455 0.00 0.00 0.00 3.66
447 451 2.632512 AGCAAACAACCGATTTTCCCAT 59.367 40.909 0.00 0.00 0.00 4.00
448 452 2.035632 AGCAAACAACCGATTTTCCCA 58.964 42.857 0.00 0.00 0.00 4.37
449 453 2.812358 AGCAAACAACCGATTTTCCC 57.188 45.000 0.00 0.00 0.00 3.97
450 454 5.054390 TCATAGCAAACAACCGATTTTCC 57.946 39.130 0.00 0.00 0.00 3.13
451 455 5.938322 TCTCATAGCAAACAACCGATTTTC 58.062 37.500 0.00 0.00 0.00 2.29
452 456 5.705441 TCTCTCATAGCAAACAACCGATTTT 59.295 36.000 0.00 0.00 0.00 1.82
453 457 5.245531 TCTCTCATAGCAAACAACCGATTT 58.754 37.500 0.00 0.00 0.00 2.17
454 458 4.832248 TCTCTCATAGCAAACAACCGATT 58.168 39.130 0.00 0.00 0.00 3.34
455 459 4.471904 TCTCTCATAGCAAACAACCGAT 57.528 40.909 0.00 0.00 0.00 4.18
456 460 3.953712 TCTCTCATAGCAAACAACCGA 57.046 42.857 0.00 0.00 0.00 4.69
457 461 4.183865 TCATCTCTCATAGCAAACAACCG 58.816 43.478 0.00 0.00 0.00 4.44
458 462 7.443575 ACATATCATCTCTCATAGCAAACAACC 59.556 37.037 0.00 0.00 0.00 3.77
459 463 8.375608 ACATATCATCTCTCATAGCAAACAAC 57.624 34.615 0.00 0.00 0.00 3.32
460 464 8.969260 AACATATCATCTCTCATAGCAAACAA 57.031 30.769 0.00 0.00 0.00 2.83
461 465 8.969260 AAACATATCATCTCTCATAGCAAACA 57.031 30.769 0.00 0.00 0.00 2.83
471 475 9.941664 CCATTGTGTAAAAACATATCATCTCTC 57.058 33.333 0.00 0.00 0.00 3.20
472 476 9.466497 ACCATTGTGTAAAAACATATCATCTCT 57.534 29.630 0.00 0.00 0.00 3.10
473 477 9.507280 CACCATTGTGTAAAAACATATCATCTC 57.493 33.333 0.00 0.00 37.72 2.75
519 523 8.673711 GGGCTTTTGAAAAAGTTTACAAGAAAT 58.326 29.630 15.08 0.00 45.48 2.17
520 524 7.148557 CGGGCTTTTGAAAAAGTTTACAAGAAA 60.149 33.333 15.08 2.48 45.48 2.52
521 525 6.311690 CGGGCTTTTGAAAAAGTTTACAAGAA 59.688 34.615 15.08 5.99 45.48 2.52
522 526 5.808030 CGGGCTTTTGAAAAAGTTTACAAGA 59.192 36.000 15.08 4.40 45.48 3.02
523 527 5.579119 ACGGGCTTTTGAAAAAGTTTACAAG 59.421 36.000 15.08 5.20 45.48 3.16
524 528 5.348997 CACGGGCTTTTGAAAAAGTTTACAA 59.651 36.000 15.08 0.00 45.48 2.41
525 529 4.865365 CACGGGCTTTTGAAAAAGTTTACA 59.135 37.500 15.08 0.00 45.48 2.41
526 530 4.269123 CCACGGGCTTTTGAAAAAGTTTAC 59.731 41.667 15.08 5.63 45.48 2.01
527 531 4.434520 CCACGGGCTTTTGAAAAAGTTTA 58.565 39.130 15.08 0.00 45.48 2.01
528 532 3.266636 CCACGGGCTTTTGAAAAAGTTT 58.733 40.909 15.08 0.00 45.48 2.66
529 533 2.899976 CCACGGGCTTTTGAAAAAGTT 58.100 42.857 15.08 0.00 45.48 2.66
530 534 1.472552 GCCACGGGCTTTTGAAAAAGT 60.473 47.619 15.08 0.00 46.69 2.66
531 535 1.217001 GCCACGGGCTTTTGAAAAAG 58.783 50.000 10.53 10.53 46.69 2.27
532 536 3.371087 GCCACGGGCTTTTGAAAAA 57.629 47.368 7.58 0.00 46.69 1.94
546 550 2.009774 AGAGTGATTATGCGTTGCCAC 58.990 47.619 0.00 0.00 0.00 5.01
547 551 2.401583 AGAGTGATTATGCGTTGCCA 57.598 45.000 0.00 0.00 0.00 4.92
548 552 3.246226 CAGTAGAGTGATTATGCGTTGCC 59.754 47.826 0.00 0.00 0.00 4.52
549 553 3.246226 CCAGTAGAGTGATTATGCGTTGC 59.754 47.826 0.00 0.00 0.00 4.17
550 554 4.268644 CACCAGTAGAGTGATTATGCGTTG 59.731 45.833 0.00 0.00 37.42 4.10
551 555 4.081642 ACACCAGTAGAGTGATTATGCGTT 60.082 41.667 0.00 0.00 38.63 4.84
552 556 3.447586 ACACCAGTAGAGTGATTATGCGT 59.552 43.478 0.00 0.00 38.63 5.24
553 557 4.046938 ACACCAGTAGAGTGATTATGCG 57.953 45.455 0.00 0.00 38.63 4.73
554 558 9.542462 TTAATTACACCAGTAGAGTGATTATGC 57.458 33.333 0.00 0.00 38.63 3.14
558 562 8.548877 ACCATTAATTACACCAGTAGAGTGATT 58.451 33.333 0.00 0.00 38.63 2.57
559 563 8.090788 ACCATTAATTACACCAGTAGAGTGAT 57.909 34.615 0.00 0.00 38.63 3.06
560 564 7.399191 AGACCATTAATTACACCAGTAGAGTGA 59.601 37.037 0.00 0.00 38.63 3.41
561 565 7.556844 AGACCATTAATTACACCAGTAGAGTG 58.443 38.462 0.00 0.00 41.15 3.51
562 566 7.735326 AGACCATTAATTACACCAGTAGAGT 57.265 36.000 0.00 0.00 0.00 3.24
563 567 7.011482 GCAAGACCATTAATTACACCAGTAGAG 59.989 40.741 0.00 0.00 0.00 2.43
564 568 6.821665 GCAAGACCATTAATTACACCAGTAGA 59.178 38.462 0.00 0.00 0.00 2.59
565 569 6.038271 GGCAAGACCATTAATTACACCAGTAG 59.962 42.308 0.00 0.00 38.86 2.57
566 570 5.883673 GGCAAGACCATTAATTACACCAGTA 59.116 40.000 0.00 0.00 38.86 2.74
567 571 4.705023 GGCAAGACCATTAATTACACCAGT 59.295 41.667 0.00 0.00 38.86 4.00
568 572 4.097892 GGGCAAGACCATTAATTACACCAG 59.902 45.833 0.00 0.00 42.05 4.00
569 573 4.020543 GGGCAAGACCATTAATTACACCA 58.979 43.478 0.00 0.00 42.05 4.17
570 574 3.383505 GGGGCAAGACCATTAATTACACC 59.616 47.826 0.00 0.00 42.05 4.16
571 575 4.278310 AGGGGCAAGACCATTAATTACAC 58.722 43.478 0.00 0.00 42.05 2.90
572 576 4.017958 TGAGGGGCAAGACCATTAATTACA 60.018 41.667 0.00 0.00 42.05 2.41
573 577 4.532834 TGAGGGGCAAGACCATTAATTAC 58.467 43.478 0.00 0.00 42.05 1.89
574 578 4.871871 TGAGGGGCAAGACCATTAATTA 57.128 40.909 0.00 0.00 42.05 1.40
575 579 3.756082 TGAGGGGCAAGACCATTAATT 57.244 42.857 0.00 0.00 42.05 1.40
576 580 3.979501 ATGAGGGGCAAGACCATTAAT 57.020 42.857 0.00 0.00 42.05 1.40
577 581 3.756082 AATGAGGGGCAAGACCATTAA 57.244 42.857 0.00 0.00 42.05 1.40
578 582 3.756082 AAATGAGGGGCAAGACCATTA 57.244 42.857 0.00 0.00 42.05 1.90
579 583 2.629017 AAATGAGGGGCAAGACCATT 57.371 45.000 0.00 0.00 42.05 3.16
580 584 2.568509 CAAAAATGAGGGGCAAGACCAT 59.431 45.455 0.00 0.00 42.05 3.55
581 585 1.969923 CAAAAATGAGGGGCAAGACCA 59.030 47.619 0.00 0.00 42.05 4.02
582 586 1.970640 ACAAAAATGAGGGGCAAGACC 59.029 47.619 0.00 0.00 37.93 3.85
583 587 2.351738 CGACAAAAATGAGGGGCAAGAC 60.352 50.000 0.00 0.00 0.00 3.01
584 588 1.885887 CGACAAAAATGAGGGGCAAGA 59.114 47.619 0.00 0.00 0.00 3.02
585 589 1.669795 GCGACAAAAATGAGGGGCAAG 60.670 52.381 0.00 0.00 0.00 4.01
586 590 0.316841 GCGACAAAAATGAGGGGCAA 59.683 50.000 0.00 0.00 0.00 4.52
587 591 0.825425 TGCGACAAAAATGAGGGGCA 60.825 50.000 0.00 0.00 0.00 5.36
588 592 0.532115 ATGCGACAAAAATGAGGGGC 59.468 50.000 0.00 0.00 0.00 5.80
589 593 1.736696 GCATGCGACAAAAATGAGGGG 60.737 52.381 0.00 0.00 0.00 4.79
590 594 1.067706 TGCATGCGACAAAAATGAGGG 60.068 47.619 14.09 0.00 0.00 4.30
591 595 2.350899 TGCATGCGACAAAAATGAGG 57.649 45.000 14.09 0.00 0.00 3.86
592 596 4.201647 GGATTTGCATGCGACAAAAATGAG 60.202 41.667 14.09 0.00 40.19 2.90
593 597 3.679025 GGATTTGCATGCGACAAAAATGA 59.321 39.130 14.09 0.00 40.19 2.57
594 598 3.432592 TGGATTTGCATGCGACAAAAATG 59.567 39.130 14.09 0.00 40.19 2.32
595 599 3.661944 TGGATTTGCATGCGACAAAAAT 58.338 36.364 14.09 12.57 40.19 1.82
596 600 3.103447 TGGATTTGCATGCGACAAAAA 57.897 38.095 14.09 7.91 40.19 1.94
597 601 2.808523 TGGATTTGCATGCGACAAAA 57.191 40.000 14.09 8.30 40.19 2.44
598 602 2.808523 TTGGATTTGCATGCGACAAA 57.191 40.000 14.09 8.69 40.98 2.83
599 603 4.652421 ATATTGGATTTGCATGCGACAA 57.348 36.364 14.09 12.18 0.00 3.18
600 604 4.142204 ACAATATTGGATTTGCATGCGACA 60.142 37.500 19.37 2.68 0.00 4.35
601 605 4.362279 ACAATATTGGATTTGCATGCGAC 58.638 39.130 19.37 0.00 0.00 5.19
602 606 4.652421 ACAATATTGGATTTGCATGCGA 57.348 36.364 19.37 8.74 0.00 5.10
603 607 5.400188 CAGTACAATATTGGATTTGCATGCG 59.600 40.000 19.37 0.00 0.00 4.73
604 608 6.275335 ACAGTACAATATTGGATTTGCATGC 58.725 36.000 19.37 11.82 0.00 4.06
605 609 7.587392 CGTACAGTACAATATTGGATTTGCATG 59.413 37.037 19.37 6.76 0.00 4.06
606 610 7.497579 TCGTACAGTACAATATTGGATTTGCAT 59.502 33.333 19.37 2.85 0.00 3.96
607 611 6.819146 TCGTACAGTACAATATTGGATTTGCA 59.181 34.615 19.37 2.69 0.00 4.08
608 612 7.241663 TCGTACAGTACAATATTGGATTTGC 57.758 36.000 19.37 2.43 0.00 3.68
613 617 9.687210 GTCAATATCGTACAGTACAATATTGGA 57.313 33.333 28.69 19.14 42.29 3.53
614 618 8.922676 GGTCAATATCGTACAGTACAATATTGG 58.077 37.037 28.69 17.86 42.29 3.16
615 619 8.635983 CGGTCAATATCGTACAGTACAATATTG 58.364 37.037 25.98 25.98 42.89 1.90
616 620 7.327761 GCGGTCAATATCGTACAGTACAATATT 59.672 37.037 10.12 10.12 30.52 1.28
617 621 6.805271 GCGGTCAATATCGTACAGTACAATAT 59.195 38.462 11.37 5.02 0.00 1.28
618 622 6.144854 GCGGTCAATATCGTACAGTACAATA 58.855 40.000 11.37 2.68 0.00 1.90
619 623 4.980434 GCGGTCAATATCGTACAGTACAAT 59.020 41.667 11.37 0.20 0.00 2.71
620 624 4.142425 TGCGGTCAATATCGTACAGTACAA 60.142 41.667 11.37 0.00 0.00 2.41
621 625 3.377798 TGCGGTCAATATCGTACAGTACA 59.622 43.478 11.37 0.00 0.00 2.90
622 626 3.956233 TGCGGTCAATATCGTACAGTAC 58.044 45.455 0.00 0.00 0.00 2.73
623 627 3.004002 CCTGCGGTCAATATCGTACAGTA 59.996 47.826 0.00 0.00 0.00 2.74
624 628 2.223735 CCTGCGGTCAATATCGTACAGT 60.224 50.000 0.00 0.00 0.00 3.55
625 629 2.223735 ACCTGCGGTCAATATCGTACAG 60.224 50.000 0.00 0.00 0.00 2.74
626 630 1.752498 ACCTGCGGTCAATATCGTACA 59.248 47.619 0.00 0.00 0.00 2.90
627 631 2.124903 CACCTGCGGTCAATATCGTAC 58.875 52.381 0.00 0.00 31.02 3.67
628 632 1.067974 CCACCTGCGGTCAATATCGTA 59.932 52.381 0.00 0.00 31.02 3.43
629 633 0.179084 CCACCTGCGGTCAATATCGT 60.179 55.000 0.00 0.00 31.02 3.73
630 634 0.880278 CCCACCTGCGGTCAATATCG 60.880 60.000 0.00 0.00 31.02 2.92
631 635 0.468226 TCCCACCTGCGGTCAATATC 59.532 55.000 0.00 0.00 31.02 1.63
632 636 0.180406 GTCCCACCTGCGGTCAATAT 59.820 55.000 0.00 0.00 31.02 1.28
633 637 1.195442 TGTCCCACCTGCGGTCAATA 61.195 55.000 0.00 0.00 31.02 1.90
634 638 1.852157 ATGTCCCACCTGCGGTCAAT 61.852 55.000 0.00 0.00 31.02 2.57
635 639 2.525124 ATGTCCCACCTGCGGTCAA 61.525 57.895 0.00 0.00 31.02 3.18
636 640 2.927856 ATGTCCCACCTGCGGTCA 60.928 61.111 0.00 0.00 31.02 4.02
637 641 2.436646 CATGTCCCACCTGCGGTC 60.437 66.667 0.00 0.00 31.02 4.79
638 642 4.033776 CCATGTCCCACCTGCGGT 62.034 66.667 0.00 0.00 35.62 5.68
640 644 4.720902 TGCCATGTCCCACCTGCG 62.721 66.667 0.00 0.00 0.00 5.18
641 645 2.753043 CTGCCATGTCCCACCTGC 60.753 66.667 0.00 0.00 0.00 4.85
642 646 2.753043 GCTGCCATGTCCCACCTG 60.753 66.667 0.00 0.00 0.00 4.00
643 647 4.415150 CGCTGCCATGTCCCACCT 62.415 66.667 0.00 0.00 0.00 4.00
644 648 4.722700 ACGCTGCCATGTCCCACC 62.723 66.667 0.00 0.00 0.00 4.61
645 649 2.238847 TAGACGCTGCCATGTCCCAC 62.239 60.000 0.00 0.00 35.71 4.61
646 650 1.960040 CTAGACGCTGCCATGTCCCA 61.960 60.000 0.00 0.00 35.71 4.37
647 651 1.227380 CTAGACGCTGCCATGTCCC 60.227 63.158 0.00 0.00 35.71 4.46
648 652 0.390860 ATCTAGACGCTGCCATGTCC 59.609 55.000 0.00 0.00 35.71 4.02
649 653 2.554462 TCTATCTAGACGCTGCCATGTC 59.446 50.000 0.00 0.00 35.33 3.06
650 654 2.587522 TCTATCTAGACGCTGCCATGT 58.412 47.619 0.00 0.00 0.00 3.21
651 655 3.865011 ATCTATCTAGACGCTGCCATG 57.135 47.619 0.00 0.00 34.72 3.66
652 656 4.142271 GCTAATCTATCTAGACGCTGCCAT 60.142 45.833 0.00 0.00 34.72 4.40
653 657 3.191581 GCTAATCTATCTAGACGCTGCCA 59.808 47.826 0.00 0.00 34.72 4.92
654 658 3.191581 TGCTAATCTATCTAGACGCTGCC 59.808 47.826 0.00 0.00 34.72 4.85
655 659 4.427096 TGCTAATCTATCTAGACGCTGC 57.573 45.455 0.00 0.00 34.72 5.25
656 660 7.881643 AAATTGCTAATCTATCTAGACGCTG 57.118 36.000 0.00 0.00 34.72 5.18
664 668 9.512588 CCACAGGATTAAATTGCTAATCTATCT 57.487 33.333 8.92 0.00 38.06 1.98
665 669 9.289782 ACCACAGGATTAAATTGCTAATCTATC 57.710 33.333 8.92 0.00 38.06 2.08
666 670 9.071276 CACCACAGGATTAAATTGCTAATCTAT 57.929 33.333 8.92 0.00 38.06 1.98
667 671 7.502226 CCACCACAGGATTAAATTGCTAATCTA 59.498 37.037 8.92 0.00 38.06 1.98
668 672 6.322201 CCACCACAGGATTAAATTGCTAATCT 59.678 38.462 8.92 0.00 38.06 2.40
669 673 6.321181 TCCACCACAGGATTAAATTGCTAATC 59.679 38.462 2.47 2.47 37.50 1.75
670 674 6.194235 TCCACCACAGGATTAAATTGCTAAT 58.806 36.000 0.00 0.00 31.23 1.73
671 675 5.575157 TCCACCACAGGATTAAATTGCTAA 58.425 37.500 0.00 0.00 31.23 3.09
672 676 5.186256 TCCACCACAGGATTAAATTGCTA 57.814 39.130 0.00 0.00 31.23 3.49
673 677 4.019174 CTCCACCACAGGATTAAATTGCT 58.981 43.478 0.00 0.00 36.99 3.91
674 678 3.131046 CCTCCACCACAGGATTAAATTGC 59.869 47.826 0.00 0.00 36.99 3.56
675 679 4.399303 GTCCTCCACCACAGGATTAAATTG 59.601 45.833 0.00 0.00 42.24 2.32
676 680 4.292306 AGTCCTCCACCACAGGATTAAATT 59.708 41.667 0.00 0.00 42.24 1.82
677 681 3.852578 AGTCCTCCACCACAGGATTAAAT 59.147 43.478 0.00 0.00 42.24 1.40
678 682 3.256704 AGTCCTCCACCACAGGATTAAA 58.743 45.455 0.00 0.00 42.24 1.52
679 683 2.915869 AGTCCTCCACCACAGGATTAA 58.084 47.619 0.00 0.00 42.24 1.40
680 684 2.642171 AGTCCTCCACCACAGGATTA 57.358 50.000 0.00 0.00 42.24 1.75
681 685 1.747444 AAGTCCTCCACCACAGGATT 58.253 50.000 0.00 0.00 42.24 3.01
682 686 2.044492 TCTAAGTCCTCCACCACAGGAT 59.956 50.000 0.00 0.00 42.24 3.24
683 687 1.431633 TCTAAGTCCTCCACCACAGGA 59.568 52.381 0.00 0.00 37.75 3.86
684 688 1.938585 TCTAAGTCCTCCACCACAGG 58.061 55.000 0.00 0.00 0.00 4.00
685 689 3.131933 CAGATCTAAGTCCTCCACCACAG 59.868 52.174 0.00 0.00 0.00 3.66
686 690 3.099905 CAGATCTAAGTCCTCCACCACA 58.900 50.000 0.00 0.00 0.00 4.17
687 691 3.131400 GTCAGATCTAAGTCCTCCACCAC 59.869 52.174 0.00 0.00 0.00 4.16
688 692 3.245622 TGTCAGATCTAAGTCCTCCACCA 60.246 47.826 0.00 0.00 0.00 4.17
689 693 3.366396 TGTCAGATCTAAGTCCTCCACC 58.634 50.000 0.00 0.00 0.00 4.61
690 694 5.278758 GCTATGTCAGATCTAAGTCCTCCAC 60.279 48.000 0.00 0.00 0.00 4.02
691 695 4.830046 GCTATGTCAGATCTAAGTCCTCCA 59.170 45.833 0.00 0.00 0.00 3.86
692 696 5.076873 AGCTATGTCAGATCTAAGTCCTCC 58.923 45.833 0.00 0.00 0.00 4.30
693 697 7.938140 ATAGCTATGTCAGATCTAAGTCCTC 57.062 40.000 5.15 0.00 0.00 3.71
694 698 8.719645 AAATAGCTATGTCAGATCTAAGTCCT 57.280 34.615 7.09 0.00 0.00 3.85
695 699 8.802267 AGAAATAGCTATGTCAGATCTAAGTCC 58.198 37.037 23.16 0.00 0.00 3.85
696 700 9.840427 GAGAAATAGCTATGTCAGATCTAAGTC 57.160 37.037 23.16 7.31 0.00 3.01
697 701 9.360901 TGAGAAATAGCTATGTCAGATCTAAGT 57.639 33.333 23.16 1.95 0.00 2.24
700 704 9.752228 AGATGAGAAATAGCTATGTCAGATCTA 57.248 33.333 23.75 8.87 0.00 1.98
701 705 8.654485 AGATGAGAAATAGCTATGTCAGATCT 57.346 34.615 23.16 22.16 0.00 2.75
703 707 9.532494 ACTAGATGAGAAATAGCTATGTCAGAT 57.468 33.333 23.16 14.78 0.00 2.90
704 708 8.932434 ACTAGATGAGAAATAGCTATGTCAGA 57.068 34.615 23.16 11.07 0.00 3.27
729 733 7.272244 TCAACGGATTTGCTAATTCTCATCTA 58.728 34.615 0.00 0.00 34.88 1.98
730 734 6.115446 TCAACGGATTTGCTAATTCTCATCT 58.885 36.000 0.00 0.00 34.88 2.90
731 735 6.363577 TCAACGGATTTGCTAATTCTCATC 57.636 37.500 0.00 0.00 34.88 2.92
785 789 5.507077 TCGACTTTTTCATGGAAGAAAACG 58.493 37.500 10.14 3.37 44.55 3.60
799 803 7.692705 GCGAAATATTCTTAGCTTCGACTTTTT 59.307 33.333 7.45 0.00 40.94 1.94
834 838 2.156343 AGGAAGACGAGACTTGTTGC 57.844 50.000 0.00 0.00 0.00 4.17
835 839 3.717707 TCAAGGAAGACGAGACTTGTTG 58.282 45.455 0.00 0.00 40.74 3.33
836 840 3.243907 CCTCAAGGAAGACGAGACTTGTT 60.244 47.826 0.00 0.00 40.74 2.83
837 841 2.297597 CCTCAAGGAAGACGAGACTTGT 59.702 50.000 0.00 0.00 40.74 3.16
838 842 2.558795 TCCTCAAGGAAGACGAGACTTG 59.441 50.000 0.00 0.00 42.18 3.16
839 843 2.877866 TCCTCAAGGAAGACGAGACTT 58.122 47.619 0.00 0.00 42.18 3.01
840 844 2.588464 TCCTCAAGGAAGACGAGACT 57.412 50.000 0.00 0.00 42.18 3.24
858 862 6.198687 TCATTCAACAAGTCAATCGTGTTTC 58.801 36.000 0.00 0.00 43.84 2.78
896 900 4.956075 ACCAACCATTCAACAAGTCTTTCT 59.044 37.500 0.00 0.00 0.00 2.52
897 901 5.262588 ACCAACCATTCAACAAGTCTTTC 57.737 39.130 0.00 0.00 0.00 2.62
916 920 2.229543 ACGACGATTGCAGTTACTACCA 59.770 45.455 0.00 0.00 0.00 3.25
985 1024 2.543802 CCATGGATGCTGAGCTGCG 61.544 63.158 5.56 0.00 35.36 5.18
1008 1054 3.181463 ACAACAGCAGATGCAAATGGTTT 60.181 39.130 7.68 0.00 45.16 3.27
1074 1126 1.167851 CAGATGTGATGCCCGTTTGT 58.832 50.000 0.00 0.00 0.00 2.83
1310 1372 3.667282 CGGTCCTGTCGTGGTCGT 61.667 66.667 0.00 0.00 38.33 4.34
1635 1709 0.613260 TATCAAGGCGCAAGGTGAGT 59.387 50.000 10.83 0.32 38.28 3.41
1657 1731 2.586792 CAGGTAGAGCAGGCCACC 59.413 66.667 5.01 1.64 0.00 4.61
1725 1805 2.402572 GGCTTGCTCTCCCGCTTTC 61.403 63.158 0.00 0.00 0.00 2.62
2086 3958 3.049674 ATTGCGCACCACCTCGTG 61.050 61.111 11.12 0.00 36.80 4.35
2452 4351 0.178861 TCCTCCTCCTCCAAGCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
2877 4797 2.494445 CAGTGGATCACGCGGCTA 59.506 61.111 12.47 0.00 39.64 3.93
3033 4958 2.669240 GTGCCCCTGTACCACTCC 59.331 66.667 0.00 0.00 0.00 3.85
3168 5093 2.111384 AGTAGGCACTCATACACCAGG 58.889 52.381 0.00 0.00 41.75 4.45
3228 5154 4.547905 ACGGCCGCTGTATCGACG 62.548 66.667 28.58 0.00 36.36 5.12
3294 6920 3.748668 CGGTTTTGATGGATGGCCTAGAT 60.749 47.826 3.32 0.00 34.31 1.98
3303 6929 2.442236 AGATGGCGGTTTTGATGGAT 57.558 45.000 0.00 0.00 0.00 3.41
3410 7036 2.551071 GCCTAGTAGTTCATCATGCCCC 60.551 54.545 0.00 0.00 0.00 5.80
3413 7039 6.030548 TGATAGCCTAGTAGTTCATCATGC 57.969 41.667 0.00 0.00 0.00 4.06
3428 7054 2.236766 GGCATCTGCATTTGATAGCCT 58.763 47.619 14.83 0.00 44.36 4.58
3445 7071 2.682856 GACTCCATCAATTTTAGCGGCA 59.317 45.455 1.45 0.00 0.00 5.69
3450 7076 6.480524 TGTGTTCGACTCCATCAATTTTAG 57.519 37.500 0.00 0.00 0.00 1.85
3584 7210 7.251321 TGCCCTTTAACCATTTGAATGTTAT 57.749 32.000 3.30 0.00 34.60 1.89
3589 7215 5.473162 GCTTTTGCCCTTTAACCATTTGAAT 59.527 36.000 0.00 0.00 40.15 2.57
3590 7216 4.819088 GCTTTTGCCCTTTAACCATTTGAA 59.181 37.500 0.00 0.00 40.15 2.69
3600 7226 5.566627 GCTCAACTTATGCTTTTGCCCTTTA 60.567 40.000 0.00 0.00 46.87 1.85
3619 7245 0.313672 GCCCGATTGTGTTTGCTCAA 59.686 50.000 0.00 0.00 33.41 3.02
3620 7246 0.821301 TGCCCGATTGTGTTTGCTCA 60.821 50.000 0.00 0.00 0.00 4.26
3621 7247 0.313672 TTGCCCGATTGTGTTTGCTC 59.686 50.000 0.00 0.00 0.00 4.26
3657 7283 2.778299 TCAGTTTGATTTGCCGCTAGT 58.222 42.857 0.00 0.00 0.00 2.57
3675 7301 4.154802 TGCCCCTACTTATATCCCATCA 57.845 45.455 0.00 0.00 0.00 3.07
3745 7371 6.708054 GGGTGATATGAAAGTTCATCAGTAGG 59.292 42.308 9.76 0.00 44.17 3.18
3749 7375 5.530171 CCTGGGTGATATGAAAGTTCATCAG 59.470 44.000 9.76 9.62 44.17 2.90
3972 8367 1.581954 CGTGAAGGAGCTGTCTCGT 59.418 57.895 0.00 0.00 40.26 4.18
3978 8373 2.671177 CGTTGCCGTGAAGGAGCTG 61.671 63.158 0.00 0.00 45.00 4.24
3993 8410 2.594962 CGAGCGTTCCAACAGCGTT 61.595 57.895 0.00 0.00 34.98 4.84
4030 8447 2.424601 CAATGCATGGAAGGACAACGAT 59.575 45.455 0.00 0.00 0.00 3.73
4073 8493 1.409521 CCCGCCCATTACAATTCCTCA 60.410 52.381 0.00 0.00 0.00 3.86
4074 8494 1.133915 TCCCGCCCATTACAATTCCTC 60.134 52.381 0.00 0.00 0.00 3.71
4082 8502 1.087771 CGTTGAGTCCCGCCCATTAC 61.088 60.000 0.00 0.00 0.00 1.89
4115 8536 2.297315 GGTATCTCGAGCATGGATGTCA 59.703 50.000 7.81 0.00 0.00 3.58
4147 8571 4.174762 CCTTCTACTCTTTCTACCGCAAC 58.825 47.826 0.00 0.00 0.00 4.17
4209 8633 2.764128 ATGGAGGCGTCGACCCAT 60.764 61.111 20.68 18.32 34.77 4.00
4246 8670 1.302949 CGGGCCCCAGAATTCTCAA 59.697 57.895 18.66 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.