Multiple sequence alignment - TraesCS6B01G135900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G135900 chr6B 100.000 4682 0 0 1 4682 133161253 133165934 0.000000e+00 8647.0
1 TraesCS6B01G135900 chr6B 94.737 57 3 0 704 760 575936083 575936139 6.450000e-14 89.8
2 TraesCS6B01G135900 chr6D 93.677 2752 91 28 763 3468 59632689 59635403 0.000000e+00 4041.0
3 TraesCS6B01G135900 chr6D 84.444 720 68 21 1 708 59631887 59632574 0.000000e+00 669.0
4 TraesCS6B01G135900 chr6D 92.529 348 18 3 4154 4494 59638184 59638530 4.210000e-135 492.0
5 TraesCS6B01G135900 chr6D 93.981 216 9 3 3513 3727 59635490 59635702 1.620000e-84 324.0
6 TraesCS6B01G135900 chr6D 88.119 202 16 5 3797 3991 59637421 59637621 2.820000e-57 233.0
7 TraesCS6B01G135900 chr6D 97.248 109 3 0 4046 4154 59637849 59637957 8.000000e-43 185.0
8 TraesCS6B01G135900 chr6D 96.825 63 2 0 3734 3796 59635682 59635744 6.410000e-19 106.0
9 TraesCS6B01G135900 chr6A 92.765 1244 49 23 763 2004 75918793 75919997 0.000000e+00 1760.0
10 TraesCS6B01G135900 chr6A 93.356 873 45 8 2860 3727 75921387 75922251 0.000000e+00 1279.0
11 TraesCS6B01G135900 chr6A 96.242 745 24 3 1981 2725 75920187 75920927 0.000000e+00 1218.0
12 TraesCS6B01G135900 chr6A 92.424 396 18 5 4154 4541 75923138 75923529 5.290000e-154 555.0
13 TraesCS6B01G135900 chr6A 89.513 267 18 5 3734 3991 75922231 75922496 3.490000e-86 329.0
14 TraesCS6B01G135900 chr6A 94.667 150 6 1 4007 4154 75922551 75922700 1.010000e-56 231.0
15 TraesCS6B01G135900 chr6A 95.098 102 5 0 4536 4637 75937283 75937384 1.350000e-35 161.0
16 TraesCS6B01G135900 chr6A 93.220 59 4 0 704 762 140731860 140731918 2.320000e-13 87.9
17 TraesCS6B01G135900 chr6A 89.831 59 6 0 704 762 7704752 7704694 5.020000e-10 76.8
18 TraesCS6B01G135900 chr6A 100.000 35 0 0 4637 4671 75937403 75937437 1.090000e-06 65.8
19 TraesCS6B01G135900 chr2A 84.071 113 16 2 1 113 548179779 548179889 1.780000e-19 108.0
20 TraesCS6B01G135900 chr2A 91.667 60 5 0 704 763 133680073 133680014 3.000000e-12 84.2
21 TraesCS6B01G135900 chr2A 91.071 56 5 0 704 759 718727672 718727617 5.020000e-10 76.8
22 TraesCS6B01G135900 chr7B 92.857 56 4 0 705 760 6858432 6858487 1.080000e-11 82.4
23 TraesCS6B01G135900 chr5A 91.228 57 5 0 704 760 394443837 394443893 1.400000e-10 78.7
24 TraesCS6B01G135900 chr3B 90.909 55 5 0 706 760 547346491 547346545 1.810000e-09 75.0
25 TraesCS6B01G135900 chr7A 88.525 61 6 1 704 763 88896489 88896429 6.500000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G135900 chr6B 133161253 133165934 4681 False 8647.000000 8647 100.000000 1 4682 1 chr6B.!!$F1 4681
1 TraesCS6B01G135900 chr6D 59631887 59638530 6643 False 864.285714 4041 92.403286 1 4494 7 chr6D.!!$F1 4493
2 TraesCS6B01G135900 chr6A 75918793 75923529 4736 False 895.333333 1760 93.161167 763 4541 6 chr6A.!!$F2 3778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.179032 TTCACGTGGTCAGCAATGGT 60.179 50.0 17.00 0.0 0.00 3.55 F
1347 1429 0.172578 CATTCGTCGACTGCACCCTA 59.827 55.0 14.70 0.0 0.00 3.53 F
1474 1556 0.036164 TTGAATGCCTGTACCGCTGT 59.964 50.0 3.95 0.0 0.00 4.40 F
1477 1559 0.178068 AATGCCTGTACCGCTGTAGG 59.822 55.0 3.95 0.0 37.30 3.18 F
1790 1873 0.322816 ATGGCTTGTCTGGCGTTGAT 60.323 50.0 0.00 0.0 35.06 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1555 0.108138 ATTGAGGTCACAGCGCCTAC 60.108 55.000 2.29 0.0 34.81 3.18 R
3190 3818 1.291184 CGTCCTCAATGTCAGCGCAA 61.291 55.000 11.47 0.0 0.00 4.85 R
3205 3833 2.403252 ACCATGGTTCATCTTCGTCC 57.597 50.000 13.00 0.0 0.00 4.79 R
3274 3902 4.041198 TCTTCGTCTTGTGAAGGGGTTATT 59.959 41.667 3.19 0.0 42.43 1.40 R
3745 4421 0.102844 CAACACAACAAGCACCCTGG 59.897 55.000 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.029020 TGTCACATTCCTCTTCAGACGG 60.029 50.000 0.00 0.00 0.00 4.79
161 162 5.921962 ATTTTGACCTTCTAGGCAATTCC 57.078 39.130 0.00 0.00 39.63 3.01
163 164 3.914426 TGACCTTCTAGGCAATTCCTC 57.086 47.619 0.38 0.00 43.20 3.71
166 167 2.168728 ACCTTCTAGGCAATTCCTCGAC 59.831 50.000 0.38 0.00 43.20 4.20
172 173 0.322546 GGCAATTCCTCGACCACCTT 60.323 55.000 0.00 0.00 0.00 3.50
197 198 1.372087 GGAAGCCATCTGGTTGCTCG 61.372 60.000 0.00 0.00 39.43 5.03
250 251 2.203126 GGCATTGAGAGGGCCTCG 60.203 66.667 27.11 14.02 44.92 4.63
256 257 1.030488 TTGAGAGGGCCTCGTAGACG 61.030 60.000 27.11 0.00 44.92 4.18
270 271 2.629050 TAGACGCCATCCGAAGCAGC 62.629 60.000 0.00 0.00 41.02 5.25
287 288 4.803426 CAGTGGCTCGGCTCGGTC 62.803 72.222 0.00 0.00 0.00 4.79
310 311 1.841663 GCGTTCACGTGGTCAGCAAT 61.842 55.000 17.00 0.00 42.22 3.56
312 313 0.238289 GTTCACGTGGTCAGCAATGG 59.762 55.000 17.00 0.00 0.00 3.16
313 314 0.179032 TTCACGTGGTCAGCAATGGT 60.179 50.000 17.00 0.00 0.00 3.55
365 376 2.124860 GACCCCAAATAGGCGCGT 60.125 61.111 8.43 8.08 35.39 6.01
366 377 1.747745 GACCCCAAATAGGCGCGTT 60.748 57.895 8.36 0.00 35.39 4.84
386 397 3.991051 CGGGGCTGTCACGACTGT 61.991 66.667 0.00 0.00 33.50 3.55
387 398 2.048127 GGGGCTGTCACGACTGTC 60.048 66.667 0.00 0.00 34.67 3.51
388 399 2.048127 GGGCTGTCACGACTGTCC 60.048 66.667 11.30 11.30 45.36 4.02
389 400 2.430921 GGCTGTCACGACTGTCCG 60.431 66.667 1.55 0.35 33.50 4.79
390 401 2.430921 GCTGTCACGACTGTCCGG 60.431 66.667 0.00 0.00 33.50 5.14
391 402 2.916052 GCTGTCACGACTGTCCGGA 61.916 63.158 0.00 0.00 33.50 5.14
392 403 1.210413 CTGTCACGACTGTCCGGAG 59.790 63.158 3.06 0.00 0.00 4.63
393 404 2.126424 GTCACGACTGTCCGGAGC 60.126 66.667 3.06 0.00 0.00 4.70
394 405 3.733960 TCACGACTGTCCGGAGCG 61.734 66.667 3.06 9.52 0.00 5.03
395 406 3.733960 CACGACTGTCCGGAGCGA 61.734 66.667 18.91 0.86 0.00 4.93
396 407 3.735029 ACGACTGTCCGGAGCGAC 61.735 66.667 18.91 3.72 0.00 5.19
397 408 4.813526 CGACTGTCCGGAGCGACG 62.814 72.222 3.06 7.43 35.40 5.12
405 416 4.344474 CGGAGCGACGGGGCTATC 62.344 72.222 2.26 0.00 44.93 2.08
406 417 4.344474 GGAGCGACGGGGCTATCG 62.344 72.222 2.26 0.00 44.93 2.92
407 418 4.344474 GAGCGACGGGGCTATCGG 62.344 72.222 2.26 0.00 44.93 4.18
446 458 2.251642 GGTGGACCAACGACAGTGC 61.252 63.158 0.00 0.00 35.64 4.40
465 477 3.508840 GTTGGCGGCCGGAATCAG 61.509 66.667 29.38 0.00 0.00 2.90
473 485 3.833645 CCGGAATCAGGTCGGCGA 61.834 66.667 4.99 4.99 37.25 5.54
520 532 1.801178 CGAGAGGAAGTTTCACTTGGC 59.199 52.381 0.00 0.00 38.80 4.52
549 562 0.958091 TTTGCGCCACATAGCTTTGT 59.042 45.000 4.18 3.73 0.00 2.83
561 574 1.289276 AGCTTTGTTTTTGCGGCAAG 58.711 45.000 15.78 3.34 0.00 4.01
585 598 8.037382 AGTGCTTGCATGCTATATATTTACAG 57.963 34.615 23.31 0.00 0.00 2.74
587 600 5.961843 GCTTGCATGCTATATATTTACAGCG 59.038 40.000 20.33 0.00 36.81 5.18
618 631 3.181440 TGAAGTTCAGGTCTGCCTCAAAT 60.181 43.478 0.08 0.00 44.97 2.32
644 657 9.434275 TTGAGACCACAAAATATAGAGATAGGA 57.566 33.333 0.00 0.00 0.00 2.94
645 658 8.861086 TGAGACCACAAAATATAGAGATAGGAC 58.139 37.037 0.00 0.00 0.00 3.85
647 660 9.213777 AGACCACAAAATATAGAGATAGGACAA 57.786 33.333 0.00 0.00 0.00 3.18
649 662 9.784531 ACCACAAAATATAGAGATAGGACAATG 57.215 33.333 0.00 0.00 0.00 2.82
669 682 9.736023 GACAATGTTGGAGTATTATTTTGGATC 57.264 33.333 0.00 0.00 0.00 3.36
676 689 8.972458 TGGAGTATTATTTTGGATCGAAATGA 57.028 30.769 3.57 2.55 30.96 2.57
728 741 5.399038 CCTGGTGGGTTAAGGATATCATTGT 60.399 44.000 12.74 0.00 32.43 2.71
730 743 5.070685 GGTGGGTTAAGGATATCATTGTCC 58.929 45.833 12.74 13.10 33.46 4.02
732 745 5.531287 GTGGGTTAAGGATATCATTGTCCAC 59.469 44.000 22.75 22.75 35.65 4.02
733 746 5.070685 GGGTTAAGGATATCATTGTCCACC 58.929 45.833 12.74 11.87 35.65 4.61
735 748 6.043938 GGGTTAAGGATATCATTGTCCACCTA 59.956 42.308 12.74 0.00 35.65 3.08
736 749 7.420913 GGGTTAAGGATATCATTGTCCACCTAA 60.421 40.741 12.74 0.00 35.65 2.69
738 751 5.568620 AGGATATCATTGTCCACCTAACC 57.431 43.478 4.83 0.00 35.65 2.85
739 752 4.975147 AGGATATCATTGTCCACCTAACCA 59.025 41.667 4.83 0.00 35.65 3.67
742 755 6.240002 GGATATCATTGTCCACCTAACCATCT 60.240 42.308 4.83 0.00 33.49 2.90
743 756 4.487714 TCATTGTCCACCTAACCATCTC 57.512 45.455 0.00 0.00 0.00 2.75
745 758 4.288366 TCATTGTCCACCTAACCATCTCAA 59.712 41.667 0.00 0.00 0.00 3.02
746 759 4.927267 TTGTCCACCTAACCATCTCAAT 57.073 40.909 0.00 0.00 0.00 2.57
747 760 4.487714 TGTCCACCTAACCATCTCAATC 57.512 45.455 0.00 0.00 0.00 2.67
749 762 4.192317 GTCCACCTAACCATCTCAATCAC 58.808 47.826 0.00 0.00 0.00 3.06
750 763 3.843619 TCCACCTAACCATCTCAATCACA 59.156 43.478 0.00 0.00 0.00 3.58
751 764 4.080919 TCCACCTAACCATCTCAATCACAG 60.081 45.833 0.00 0.00 0.00 3.66
752 765 4.194640 CACCTAACCATCTCAATCACAGG 58.805 47.826 0.00 0.00 0.00 4.00
753 766 3.846588 ACCTAACCATCTCAATCACAGGT 59.153 43.478 0.00 0.00 0.00 4.00
754 767 4.289672 ACCTAACCATCTCAATCACAGGTT 59.710 41.667 0.00 0.00 41.74 3.50
755 768 4.637534 CCTAACCATCTCAATCACAGGTTG 59.362 45.833 0.00 0.00 39.49 3.77
756 769 3.077484 ACCATCTCAATCACAGGTTGG 57.923 47.619 0.00 0.00 0.00 3.77
758 771 3.181429 ACCATCTCAATCACAGGTTGGTT 60.181 43.478 0.00 0.00 32.48 3.67
759 772 3.441572 CCATCTCAATCACAGGTTGGTTC 59.558 47.826 0.00 0.00 0.00 3.62
760 773 3.855255 TCTCAATCACAGGTTGGTTCA 57.145 42.857 0.00 0.00 0.00 3.18
761 774 3.476552 TCTCAATCACAGGTTGGTTCAC 58.523 45.455 0.00 0.00 0.00 3.18
867 948 5.125900 TCCATAGACTACGAATTCGAACCAA 59.874 40.000 33.05 14.09 43.02 3.67
882 963 4.569162 TCGAACCAACTGAGTTTGTTGTAG 59.431 41.667 17.99 9.99 42.09 2.74
908 989 1.034838 AGCTCTGACTAGGCACCGAG 61.035 60.000 9.94 9.94 0.00 4.63
985 1067 2.861360 GCTATTTATCCGTTCCTCGCGT 60.861 50.000 5.77 0.00 38.35 6.01
1119 1201 0.673333 ATGCCGTCTCGTGCAAATCA 60.673 50.000 0.00 0.00 36.86 2.57
1142 1224 1.743252 GCAAGACCAGGGCGAAGAG 60.743 63.158 0.00 0.00 0.00 2.85
1157 1239 0.251077 AAGAGCAAGGCCAAGGACAG 60.251 55.000 5.01 0.00 0.00 3.51
1347 1429 0.172578 CATTCGTCGACTGCACCCTA 59.827 55.000 14.70 0.00 0.00 3.53
1386 1468 1.590792 CGCCGTCCGTAATCCCTTC 60.591 63.158 0.00 0.00 0.00 3.46
1397 1479 2.532250 AATCCCTTCCCTTTCGCATT 57.468 45.000 0.00 0.00 0.00 3.56
1414 1496 2.846693 CATTTACCTTTCCGTTGTCGC 58.153 47.619 0.00 0.00 35.54 5.19
1443 1525 3.576648 AGCTGTTCGTGCTTAGTAGAAC 58.423 45.455 0.00 8.69 42.19 3.01
1444 1526 3.256136 AGCTGTTCGTGCTTAGTAGAACT 59.744 43.478 13.86 0.00 42.29 3.01
1445 1527 4.458295 AGCTGTTCGTGCTTAGTAGAACTA 59.542 41.667 13.86 0.00 42.29 2.24
1446 1528 4.558080 GCTGTTCGTGCTTAGTAGAACTAC 59.442 45.833 13.86 4.05 42.29 2.73
1447 1529 7.739175 AGCTGTTCGTGCTTAGTAGAACTACT 61.739 42.308 16.87 16.87 42.29 2.57
1448 1530 6.402983 GCTGTTCGTGCTTAGTAGAACTACTA 60.403 42.308 15.10 15.10 43.98 1.82
1449 1531 7.069852 TGTTCGTGCTTAGTAGAACTACTAG 57.930 40.000 17.38 13.75 45.92 2.57
1450 1532 6.652481 TGTTCGTGCTTAGTAGAACTACTAGT 59.348 38.462 17.38 0.00 45.92 2.57
1451 1533 7.819415 TGTTCGTGCTTAGTAGAACTACTAGTA 59.181 37.037 17.38 1.89 45.92 1.82
1452 1534 8.327429 GTTCGTGCTTAGTAGAACTACTAGTAG 58.673 40.741 25.30 25.30 45.92 2.57
1453 1535 7.776107 TCGTGCTTAGTAGAACTACTAGTAGA 58.224 38.462 31.93 10.54 45.92 2.59
1454 1536 8.253810 TCGTGCTTAGTAGAACTACTAGTAGAA 58.746 37.037 31.93 15.16 45.92 2.10
1465 1547 8.200792 AGAACTACTAGTAGAATTGAATGCCTG 58.799 37.037 31.93 5.80 36.97 4.85
1469 1551 6.583562 ACTAGTAGAATTGAATGCCTGTACC 58.416 40.000 3.59 0.00 0.00 3.34
1470 1552 4.442706 AGTAGAATTGAATGCCTGTACCG 58.557 43.478 0.00 0.00 0.00 4.02
1471 1553 2.017049 AGAATTGAATGCCTGTACCGC 58.983 47.619 0.00 0.00 0.00 5.68
1472 1554 2.017049 GAATTGAATGCCTGTACCGCT 58.983 47.619 3.95 0.00 0.00 5.52
1473 1555 1.382522 ATTGAATGCCTGTACCGCTG 58.617 50.000 3.95 0.00 0.00 5.18
1474 1556 0.036164 TTGAATGCCTGTACCGCTGT 59.964 50.000 3.95 0.00 0.00 4.40
1475 1557 0.899019 TGAATGCCTGTACCGCTGTA 59.101 50.000 3.95 0.00 0.00 2.74
1476 1558 1.134818 TGAATGCCTGTACCGCTGTAG 60.135 52.381 3.95 0.00 0.00 2.74
1477 1559 0.178068 AATGCCTGTACCGCTGTAGG 59.822 55.000 3.95 0.00 37.30 3.18
1487 1569 2.815647 GCTGTAGGCGCTGTGACC 60.816 66.667 7.64 0.00 0.00 4.02
1497 1579 2.009774 GCGCTGTGACCTCAATGTTAT 58.990 47.619 0.00 0.00 0.00 1.89
1498 1580 2.223112 GCGCTGTGACCTCAATGTTATG 60.223 50.000 0.00 0.00 0.00 1.90
1530 1612 2.493278 GTGCCCATAAGCTGTTTGATGT 59.507 45.455 0.00 0.00 0.00 3.06
1534 1616 6.039270 GTGCCCATAAGCTGTTTGATGTAATA 59.961 38.462 0.00 0.00 0.00 0.98
1544 1626 5.795972 TGTTTGATGTAATACGTCTTGGGA 58.204 37.500 13.13 0.00 35.24 4.37
1545 1627 6.411376 TGTTTGATGTAATACGTCTTGGGAT 58.589 36.000 13.13 0.00 35.24 3.85
1546 1628 7.557724 TGTTTGATGTAATACGTCTTGGGATA 58.442 34.615 13.13 0.00 35.24 2.59
1754 1837 1.210155 GCATGTTCTTGGTGGCGTC 59.790 57.895 0.00 0.00 0.00 5.19
1762 1845 2.742710 CTTGGTGGCGTCGACGAGAA 62.743 60.000 39.74 21.37 43.02 2.87
1777 1860 2.044946 GAACCTGGCGGATGGCTT 60.045 61.111 0.00 0.00 42.94 4.35
1784 1867 3.512516 GCGGATGGCTTGTCTGGC 61.513 66.667 0.00 0.00 39.11 4.85
1790 1873 0.322816 ATGGCTTGTCTGGCGTTGAT 60.323 50.000 0.00 0.00 35.06 2.57
1793 1876 1.503542 CTTGTCTGGCGTTGATGGC 59.496 57.895 0.00 0.00 0.00 4.40
1805 1888 2.775890 GTTGATGGCATCCTCATCGAT 58.224 47.619 23.92 0.00 42.73 3.59
1873 1956 6.230472 TGAAACTGATGCTAAGACTGCTAAA 58.770 36.000 0.00 0.00 0.00 1.85
1914 1997 1.065600 TTTTTGGTCTGCTGTGCGC 59.934 52.632 0.00 0.00 39.77 6.09
2004 2300 5.577164 CCTAAGGTCAGTGTTGATTTAGTCG 59.423 44.000 0.00 0.00 34.68 4.18
2069 2367 4.989241 TCAGAATGCACCATGTATGGATGG 60.989 45.833 17.40 7.55 43.54 3.51
2217 2516 5.357596 TGAGCTGCAATTATTTAGATGCACA 59.642 36.000 1.02 0.00 43.32 4.57
2224 2523 8.187480 TGCAATTATTTAGATGCACACGTATTT 58.813 29.630 0.00 0.00 43.32 1.40
2398 2697 7.094592 TGTGTGTTACTTCATGTTTGAGTCAAA 60.095 33.333 14.35 14.35 32.27 2.69
2451 2750 7.441458 GGTACAACTCCACCTTGATATATGTTC 59.559 40.741 0.00 0.00 0.00 3.18
2461 2760 9.161629 CACCTTGATATATGTTCTGTGTTACAA 57.838 33.333 0.00 0.00 0.00 2.41
2582 2881 2.847449 TCCGTGATTATGGGGAGGAAAA 59.153 45.455 0.00 0.00 33.52 2.29
2647 2946 4.408904 ACAGGGGGTTTACACTCTACTA 57.591 45.455 0.00 0.00 0.00 1.82
3190 3818 0.603569 ATGACGACGAAGACTTGGCT 59.396 50.000 0.00 0.00 0.00 4.75
3205 3833 1.136147 GGCTTGCGCTGACATTGAG 59.864 57.895 9.73 0.00 36.09 3.02
3274 3902 1.210967 ACCGTCCTGACAAAAAGACCA 59.789 47.619 0.00 0.00 0.00 4.02
3292 3920 3.756963 GACCAATAACCCCTTCACAAGAC 59.243 47.826 0.00 0.00 0.00 3.01
3363 3996 6.388619 TCAGAAGGCCTAAAAGGAATAACT 57.611 37.500 5.16 0.00 37.67 2.24
3370 4003 5.532779 GGCCTAAAAGGAATAACTCTGGATG 59.467 44.000 0.00 0.00 37.67 3.51
3383 4016 5.130292 ACTCTGGATGCAAATTTGTGAAG 57.870 39.130 19.03 10.13 0.00 3.02
3461 4094 2.023673 TCACCAGGAAGCAAACACTTG 58.976 47.619 0.00 0.00 35.49 3.16
3468 4101 3.960102 AGGAAGCAAACACTTGGAAATCA 59.040 39.130 0.00 0.00 32.76 2.57
3479 4112 6.126409 ACACTTGGAAATCACCTGAAACTTA 58.874 36.000 0.00 0.00 0.00 2.24
3481 4114 5.241728 ACTTGGAAATCACCTGAAACTTAGC 59.758 40.000 0.00 0.00 0.00 3.09
3510 4143 3.536570 GGTGAATAGGAGGTCTTTGCTC 58.463 50.000 0.00 0.00 0.00 4.26
3593 4269 4.934001 TCACCGTGTTTGTACTTTGTACAA 59.066 37.500 16.34 16.34 35.84 2.41
3610 4286 7.397892 TTGTACAATTTTCCAACTTCACTCA 57.602 32.000 3.59 0.00 0.00 3.41
3631 4307 9.371136 CACTCATGTATATTGTACTCTGTTTGT 57.629 33.333 0.00 0.00 0.00 2.83
3720 4396 1.003839 GTCATGTTCCCAGCGACCA 60.004 57.895 0.00 0.00 0.00 4.02
3721 4397 1.021390 GTCATGTTCCCAGCGACCAG 61.021 60.000 0.00 0.00 0.00 4.00
3722 4398 1.746615 CATGTTCCCAGCGACCAGG 60.747 63.158 0.00 0.00 0.00 4.45
3723 4399 2.971598 ATGTTCCCAGCGACCAGGG 61.972 63.158 0.00 0.00 46.90 4.45
3724 4400 3.637273 GTTCCCAGCGACCAGGGT 61.637 66.667 0.00 0.00 45.64 4.34
3725 4401 3.636231 TTCCCAGCGACCAGGGTG 61.636 66.667 0.00 0.00 45.64 4.61
3728 4404 4.641645 CCAGCGACCAGGGTGCAA 62.642 66.667 7.82 0.00 34.18 4.08
3729 4405 2.594303 CAGCGACCAGGGTGCAAA 60.594 61.111 7.82 0.00 0.00 3.68
3730 4406 2.192861 CAGCGACCAGGGTGCAAAA 61.193 57.895 7.82 0.00 0.00 2.44
3731 4407 1.454847 AGCGACCAGGGTGCAAAAA 60.455 52.632 7.82 0.00 0.00 1.94
3732 4408 1.299850 GCGACCAGGGTGCAAAAAC 60.300 57.895 0.00 0.00 0.00 2.43
3733 4409 1.734388 GCGACCAGGGTGCAAAAACT 61.734 55.000 0.00 0.00 0.00 2.66
3734 4410 0.030638 CGACCAGGGTGCAAAAACTG 59.969 55.000 0.00 0.00 0.00 3.16
3735 4411 1.111277 GACCAGGGTGCAAAAACTGT 58.889 50.000 0.00 0.00 0.00 3.55
3736 4412 1.480545 GACCAGGGTGCAAAAACTGTT 59.519 47.619 0.00 0.00 0.00 3.16
3737 4413 1.480545 ACCAGGGTGCAAAAACTGTTC 59.519 47.619 0.00 0.00 0.00 3.18
3738 4414 1.202521 CCAGGGTGCAAAAACTGTTCC 60.203 52.381 0.00 0.00 0.00 3.62
3739 4415 1.119684 AGGGTGCAAAAACTGTTCCC 58.880 50.000 4.92 4.92 39.09 3.97
3740 4416 0.827368 GGGTGCAAAAACTGTTCCCA 59.173 50.000 7.62 0.00 38.83 4.37
3741 4417 1.202521 GGGTGCAAAAACTGTTCCCAG 60.203 52.381 7.62 0.00 44.68 4.45
3742 4418 1.570813 GTGCAAAAACTGTTCCCAGC 58.429 50.000 0.00 0.00 42.81 4.85
3743 4419 0.102120 TGCAAAAACTGTTCCCAGCG 59.898 50.000 0.00 0.00 42.81 5.18
3744 4420 0.383949 GCAAAAACTGTTCCCAGCGA 59.616 50.000 0.00 0.00 42.81 4.93
3745 4421 1.864029 GCAAAAACTGTTCCCAGCGAC 60.864 52.381 0.00 0.00 42.81 5.19
3746 4422 1.029681 AAAAACTGTTCCCAGCGACC 58.970 50.000 0.00 0.00 42.81 4.79
3747 4423 0.106918 AAAACTGTTCCCAGCGACCA 60.107 50.000 0.00 0.00 42.81 4.02
3780 4456 5.878332 TGTGTTGCTTCGTTTCATATGAT 57.122 34.783 6.17 0.00 0.00 2.45
3804 6156 0.974010 CTGTACCACTCGGGGGCTAA 60.974 60.000 0.00 0.00 42.91 3.09
3815 6167 4.039042 GGGCTAAGGTACCCACGA 57.961 61.111 8.74 0.00 46.22 4.35
3821 6173 1.597797 TAAGGTACCCACGAGTGCCG 61.598 60.000 8.74 0.00 46.20 5.69
3844 6205 3.857038 ACCGGTGGAAGTGCGTGT 61.857 61.111 6.12 0.00 0.00 4.49
3845 6206 2.590575 CCGGTGGAAGTGCGTGTT 60.591 61.111 0.00 0.00 0.00 3.32
3850 6211 0.248458 GTGGAAGTGCGTGTTTGGTG 60.248 55.000 0.00 0.00 0.00 4.17
3862 6223 3.512154 TTTGGTGGGGCTGGAGCAG 62.512 63.158 0.20 0.00 44.36 4.24
3891 6252 4.925786 CGAAGTCGGCGATTTTCG 57.074 55.556 30.35 30.35 43.89 3.46
3910 6271 2.655364 CGTGCCGCCTCATCTACG 60.655 66.667 0.00 0.00 0.00 3.51
3949 6310 1.296715 GTCGCAGTGGATCCCAACT 59.703 57.895 9.90 3.82 34.18 3.16
3951 6312 1.191489 TCGCAGTGGATCCCAACTCA 61.191 55.000 9.90 0.00 34.18 3.41
3952 6313 0.742281 CGCAGTGGATCCCAACTCAG 60.742 60.000 9.90 0.00 34.18 3.35
3957 6318 0.982852 TGGATCCCAACTCAGCCGAT 60.983 55.000 9.90 0.00 0.00 4.18
3991 6352 5.560722 TTCCAGAGTGTTAGGAATTGTGA 57.439 39.130 0.00 0.00 36.55 3.58
3994 6355 5.071788 TCCAGAGTGTTAGGAATTGTGAGTT 59.928 40.000 0.00 0.00 0.00 3.01
3996 6357 6.934645 CCAGAGTGTTAGGAATTGTGAGTTTA 59.065 38.462 0.00 0.00 0.00 2.01
3997 6358 7.095187 CCAGAGTGTTAGGAATTGTGAGTTTAC 60.095 40.741 0.00 0.00 0.00 2.01
3998 6359 6.935208 AGAGTGTTAGGAATTGTGAGTTTACC 59.065 38.462 0.00 0.00 0.00 2.85
3999 6360 6.838382 AGTGTTAGGAATTGTGAGTTTACCT 58.162 36.000 0.00 0.00 0.00 3.08
4000 6361 6.935208 AGTGTTAGGAATTGTGAGTTTACCTC 59.065 38.462 0.00 0.00 40.89 3.85
4026 6426 4.260212 CGAGTGGTGGAATTTGCGTATAAG 60.260 45.833 0.00 0.00 0.00 1.73
4129 6663 2.229784 GCAATTTTCAGGGACAGTCCAG 59.770 50.000 21.75 12.94 38.64 3.86
4157 7136 9.614792 GAAGGTTCAATATCTGGTGTATAAGTT 57.385 33.333 0.00 0.00 0.00 2.66
4173 7152 6.486657 TGTATAAGTTTCAGAATATGGCTGCC 59.513 38.462 12.87 12.87 33.45 4.85
4186 7165 1.034292 GGCTGCCTTTCCTTGCCTAG 61.034 60.000 12.43 0.00 40.36 3.02
4190 7169 1.615262 CCTTTCCTTGCCTAGGGGG 59.385 63.158 11.72 0.00 44.86 5.40
4201 7180 5.397360 CTTGCCTAGGGGGAATCAAATAAT 58.603 41.667 11.72 0.00 41.99 1.28
4238 7217 3.118920 TGTTTGTCGAGAAACCTGACTCA 60.119 43.478 28.87 11.00 35.34 3.41
4253 7232 5.422650 ACCTGACTCAAACCTCTTATCCTAC 59.577 44.000 0.00 0.00 0.00 3.18
4264 7243 7.008021 ACCTCTTATCCTACCACGTTTAAAA 57.992 36.000 0.00 0.00 0.00 1.52
4385 7364 4.829968 AGCTATGGTCTAAGCATATGCAG 58.170 43.478 28.62 18.17 45.16 4.41
4403 7382 6.675413 ATGCAGATTAACCCGGTTAGTATA 57.325 37.500 9.96 0.00 29.41 1.47
4469 7463 7.834881 AGGAGTATTTCGTACAAGGATATGA 57.165 36.000 0.00 0.00 35.67 2.15
4542 7536 8.721133 AGATATACACCAGGTTATATGTGTCA 57.279 34.615 14.36 0.00 41.76 3.58
4543 7537 9.154632 AGATATACACCAGGTTATATGTGTCAA 57.845 33.333 14.36 0.00 41.76 3.18
4544 7538 9.944376 GATATACACCAGGTTATATGTGTCAAT 57.056 33.333 14.36 0.00 41.76 2.57
4547 7541 9.778741 ATACACCAGGTTATATGTGTCAATTAG 57.221 33.333 0.00 0.00 41.76 1.73
4548 7542 7.630082 ACACCAGGTTATATGTGTCAATTAGT 58.370 34.615 0.00 0.00 37.37 2.24
4549 7543 7.769044 ACACCAGGTTATATGTGTCAATTAGTC 59.231 37.037 0.00 0.00 37.37 2.59
4550 7544 6.984474 ACCAGGTTATATGTGTCAATTAGTCG 59.016 38.462 0.00 0.00 0.00 4.18
4551 7545 6.984474 CCAGGTTATATGTGTCAATTAGTCGT 59.016 38.462 0.00 0.00 0.00 4.34
4552 7546 7.494625 CCAGGTTATATGTGTCAATTAGTCGTT 59.505 37.037 0.00 0.00 0.00 3.85
4553 7547 9.524106 CAGGTTATATGTGTCAATTAGTCGTTA 57.476 33.333 0.00 0.00 0.00 3.18
4554 7548 9.525409 AGGTTATATGTGTCAATTAGTCGTTAC 57.475 33.333 0.00 0.00 0.00 2.50
4555 7549 8.758715 GGTTATATGTGTCAATTAGTCGTTACC 58.241 37.037 0.00 0.00 0.00 2.85
4556 7550 9.525409 GTTATATGTGTCAATTAGTCGTTACCT 57.475 33.333 0.00 0.00 0.00 3.08
4559 7553 6.774354 TGTGTCAATTAGTCGTTACCTTTC 57.226 37.500 0.00 0.00 0.00 2.62
4560 7554 6.282167 TGTGTCAATTAGTCGTTACCTTTCA 58.718 36.000 0.00 0.00 0.00 2.69
4561 7555 6.932400 TGTGTCAATTAGTCGTTACCTTTCAT 59.068 34.615 0.00 0.00 0.00 2.57
4562 7556 7.095397 TGTGTCAATTAGTCGTTACCTTTCATG 60.095 37.037 0.00 0.00 0.00 3.07
4563 7557 6.128391 TGTCAATTAGTCGTTACCTTTCATGC 60.128 38.462 0.00 0.00 0.00 4.06
4564 7558 5.935206 TCAATTAGTCGTTACCTTTCATGCA 59.065 36.000 0.00 0.00 0.00 3.96
4565 7559 6.597672 TCAATTAGTCGTTACCTTTCATGCAT 59.402 34.615 0.00 0.00 0.00 3.96
4566 7560 6.604735 ATTAGTCGTTACCTTTCATGCATC 57.395 37.500 0.00 0.00 0.00 3.91
4567 7561 4.207891 AGTCGTTACCTTTCATGCATCT 57.792 40.909 0.00 0.00 0.00 2.90
4568 7562 4.184629 AGTCGTTACCTTTCATGCATCTC 58.815 43.478 0.00 0.00 0.00 2.75
4569 7563 4.081420 AGTCGTTACCTTTCATGCATCTCT 60.081 41.667 0.00 0.00 0.00 3.10
4570 7564 4.631813 GTCGTTACCTTTCATGCATCTCTT 59.368 41.667 0.00 0.00 0.00 2.85
4571 7565 5.810587 GTCGTTACCTTTCATGCATCTCTTA 59.189 40.000 0.00 0.00 0.00 2.10
4572 7566 6.312918 GTCGTTACCTTTCATGCATCTCTTAA 59.687 38.462 0.00 0.00 0.00 1.85
4573 7567 7.011482 GTCGTTACCTTTCATGCATCTCTTAAT 59.989 37.037 0.00 0.00 0.00 1.40
4574 7568 7.224753 TCGTTACCTTTCATGCATCTCTTAATC 59.775 37.037 0.00 0.00 0.00 1.75
4575 7569 7.225538 CGTTACCTTTCATGCATCTCTTAATCT 59.774 37.037 0.00 0.00 0.00 2.40
4576 7570 6.939132 ACCTTTCATGCATCTCTTAATCTG 57.061 37.500 0.00 0.00 0.00 2.90
4577 7571 6.656902 ACCTTTCATGCATCTCTTAATCTGA 58.343 36.000 0.00 0.00 0.00 3.27
4578 7572 6.766944 ACCTTTCATGCATCTCTTAATCTGAG 59.233 38.462 0.00 0.00 0.00 3.35
4579 7573 6.293516 CCTTTCATGCATCTCTTAATCTGAGC 60.294 42.308 0.00 0.00 0.00 4.26
4580 7574 5.286267 TCATGCATCTCTTAATCTGAGCA 57.714 39.130 0.00 0.00 35.03 4.26
4581 7575 5.055144 TCATGCATCTCTTAATCTGAGCAC 58.945 41.667 0.00 0.00 33.18 4.40
4582 7576 3.451526 TGCATCTCTTAATCTGAGCACG 58.548 45.455 0.00 0.00 0.00 5.34
4583 7577 3.131046 TGCATCTCTTAATCTGAGCACGA 59.869 43.478 0.00 0.00 0.00 4.35
4584 7578 3.489047 GCATCTCTTAATCTGAGCACGAC 59.511 47.826 0.00 0.00 0.00 4.34
4585 7579 3.784701 TCTCTTAATCTGAGCACGACC 57.215 47.619 0.00 0.00 0.00 4.79
4586 7580 3.089284 TCTCTTAATCTGAGCACGACCA 58.911 45.455 0.00 0.00 0.00 4.02
4587 7581 3.119459 TCTCTTAATCTGAGCACGACCAC 60.119 47.826 0.00 0.00 0.00 4.16
4588 7582 2.560981 TCTTAATCTGAGCACGACCACA 59.439 45.455 0.00 0.00 0.00 4.17
4589 7583 3.006430 TCTTAATCTGAGCACGACCACAA 59.994 43.478 0.00 0.00 0.00 3.33
4590 7584 2.254546 AATCTGAGCACGACCACAAA 57.745 45.000 0.00 0.00 0.00 2.83
4591 7585 2.254546 ATCTGAGCACGACCACAAAA 57.745 45.000 0.00 0.00 0.00 2.44
4592 7586 2.254546 TCTGAGCACGACCACAAAAT 57.745 45.000 0.00 0.00 0.00 1.82
4593 7587 3.394674 TCTGAGCACGACCACAAAATA 57.605 42.857 0.00 0.00 0.00 1.40
4594 7588 3.325870 TCTGAGCACGACCACAAAATAG 58.674 45.455 0.00 0.00 0.00 1.73
4595 7589 3.006430 TCTGAGCACGACCACAAAATAGA 59.994 43.478 0.00 0.00 0.00 1.98
4596 7590 3.734463 TGAGCACGACCACAAAATAGAA 58.266 40.909 0.00 0.00 0.00 2.10
4597 7591 4.323417 TGAGCACGACCACAAAATAGAAT 58.677 39.130 0.00 0.00 0.00 2.40
4598 7592 4.759693 TGAGCACGACCACAAAATAGAATT 59.240 37.500 0.00 0.00 0.00 2.17
4599 7593 5.046910 AGCACGACCACAAAATAGAATTG 57.953 39.130 0.00 0.00 0.00 2.32
4600 7594 4.082787 AGCACGACCACAAAATAGAATTGG 60.083 41.667 0.00 0.00 32.02 3.16
4601 7595 4.165779 CACGACCACAAAATAGAATTGGC 58.834 43.478 0.00 0.00 32.02 4.52
4602 7596 3.823873 ACGACCACAAAATAGAATTGGCA 59.176 39.130 0.00 0.00 32.02 4.92
4603 7597 4.165779 CGACCACAAAATAGAATTGGCAC 58.834 43.478 0.00 0.00 32.02 5.01
4604 7598 4.165779 GACCACAAAATAGAATTGGCACG 58.834 43.478 0.00 0.00 32.02 5.34
4605 7599 3.572255 ACCACAAAATAGAATTGGCACGT 59.428 39.130 0.00 0.00 32.02 4.49
4606 7600 3.919804 CCACAAAATAGAATTGGCACGTG 59.080 43.478 12.28 12.28 32.02 4.49
4607 7601 4.320861 CCACAAAATAGAATTGGCACGTGA 60.321 41.667 22.23 0.00 32.02 4.35
4608 7602 5.218885 CACAAAATAGAATTGGCACGTGAA 58.781 37.500 22.23 5.85 32.02 3.18
4609 7603 5.689514 CACAAAATAGAATTGGCACGTGAAA 59.310 36.000 22.23 13.24 32.02 2.69
4610 7604 6.365789 CACAAAATAGAATTGGCACGTGAAAT 59.634 34.615 22.23 15.04 32.02 2.17
4611 7605 6.586082 ACAAAATAGAATTGGCACGTGAAATC 59.414 34.615 22.23 8.33 32.02 2.17
4612 7606 6.515272 AAATAGAATTGGCACGTGAAATCT 57.485 33.333 22.23 15.33 0.00 2.40
4613 7607 7.624360 AAATAGAATTGGCACGTGAAATCTA 57.376 32.000 22.23 16.96 0.00 1.98
4614 7608 7.807977 AATAGAATTGGCACGTGAAATCTAT 57.192 32.000 22.23 18.34 0.00 1.98
4615 7609 8.902540 AATAGAATTGGCACGTGAAATCTATA 57.097 30.769 22.23 11.34 0.00 1.31
4616 7610 8.902540 ATAGAATTGGCACGTGAAATCTATAA 57.097 30.769 22.23 0.00 0.00 0.98
4617 7611 7.251704 AGAATTGGCACGTGAAATCTATAAG 57.748 36.000 22.23 0.00 0.00 1.73
4618 7612 6.823689 AGAATTGGCACGTGAAATCTATAAGT 59.176 34.615 22.23 1.22 0.00 2.24
4619 7613 7.985184 AGAATTGGCACGTGAAATCTATAAGTA 59.015 33.333 22.23 0.00 0.00 2.24
4620 7614 8.677148 AATTGGCACGTGAAATCTATAAGTAT 57.323 30.769 22.23 0.00 0.00 2.12
4621 7615 9.772973 AATTGGCACGTGAAATCTATAAGTATA 57.227 29.630 22.23 0.00 0.00 1.47
4622 7616 9.944376 ATTGGCACGTGAAATCTATAAGTATAT 57.056 29.630 22.23 0.00 0.00 0.86
4639 7633 7.899648 AAGTATATATATTCCCCTGAGTCGG 57.100 40.000 0.00 0.00 0.00 4.79
4640 7634 6.374588 AGTATATATATTCCCCTGAGTCGGG 58.625 44.000 11.47 11.47 44.27 5.14
4641 7635 1.640917 TATATTCCCCTGAGTCGGGC 58.359 55.000 13.07 0.00 43.25 6.13
4642 7636 0.399949 ATATTCCCCTGAGTCGGGCA 60.400 55.000 13.07 0.00 43.25 5.36
4643 7637 0.619255 TATTCCCCTGAGTCGGGCAA 60.619 55.000 13.07 7.71 43.25 4.52
4644 7638 1.915078 ATTCCCCTGAGTCGGGCAAG 61.915 60.000 13.07 3.62 43.25 4.01
4645 7639 4.785453 CCCCTGAGTCGGGCAAGC 62.785 72.222 13.07 0.00 43.25 4.01
4646 7640 4.020617 CCCTGAGTCGGGCAAGCA 62.021 66.667 13.07 0.00 37.41 3.91
4647 7641 2.032528 CCTGAGTCGGGCAAGCAA 59.967 61.111 4.68 0.00 0.00 3.91
4648 7642 1.600636 CCTGAGTCGGGCAAGCAAA 60.601 57.895 4.68 0.00 0.00 3.68
4649 7643 1.580845 CCTGAGTCGGGCAAGCAAAG 61.581 60.000 4.68 0.00 0.00 2.77
4650 7644 1.580845 CTGAGTCGGGCAAGCAAAGG 61.581 60.000 0.00 0.00 0.00 3.11
4651 7645 2.282462 AGTCGGGCAAGCAAAGGG 60.282 61.111 0.00 0.00 0.00 3.95
4652 7646 2.597510 GTCGGGCAAGCAAAGGGT 60.598 61.111 0.00 0.00 0.00 4.34
4653 7647 2.197324 TCGGGCAAGCAAAGGGTT 59.803 55.556 0.00 0.00 34.43 4.11
4654 7648 0.891904 GTCGGGCAAGCAAAGGGTTA 60.892 55.000 0.00 0.00 32.48 2.85
4655 7649 0.039035 TCGGGCAAGCAAAGGGTTAT 59.961 50.000 0.00 0.00 32.48 1.89
4656 7650 0.455815 CGGGCAAGCAAAGGGTTATC 59.544 55.000 0.00 0.00 32.48 1.75
4657 7651 1.852633 GGGCAAGCAAAGGGTTATCT 58.147 50.000 0.00 0.00 32.48 1.98
4658 7652 1.751351 GGGCAAGCAAAGGGTTATCTC 59.249 52.381 0.00 0.00 32.48 2.75
4659 7653 2.446435 GGCAAGCAAAGGGTTATCTCA 58.554 47.619 0.00 0.00 32.48 3.27
4660 7654 3.026694 GGCAAGCAAAGGGTTATCTCAT 58.973 45.455 0.00 0.00 32.48 2.90
4661 7655 3.067320 GGCAAGCAAAGGGTTATCTCATC 59.933 47.826 0.00 0.00 32.48 2.92
4662 7656 3.950395 GCAAGCAAAGGGTTATCTCATCT 59.050 43.478 0.00 0.00 32.48 2.90
4663 7657 4.400567 GCAAGCAAAGGGTTATCTCATCTT 59.599 41.667 0.00 0.00 32.48 2.40
4664 7658 5.590259 GCAAGCAAAGGGTTATCTCATCTTA 59.410 40.000 0.00 0.00 32.48 2.10
4665 7659 6.458888 GCAAGCAAAGGGTTATCTCATCTTAC 60.459 42.308 0.00 0.00 32.48 2.34
4666 7660 6.313519 AGCAAAGGGTTATCTCATCTTACA 57.686 37.500 0.00 0.00 0.00 2.41
4667 7661 6.116126 AGCAAAGGGTTATCTCATCTTACAC 58.884 40.000 0.00 0.00 0.00 2.90
4668 7662 6.069963 AGCAAAGGGTTATCTCATCTTACACT 60.070 38.462 0.00 0.00 0.00 3.55
4669 7663 7.125811 AGCAAAGGGTTATCTCATCTTACACTA 59.874 37.037 0.00 0.00 0.00 2.74
4670 7664 7.439655 GCAAAGGGTTATCTCATCTTACACTAG 59.560 40.741 0.00 0.00 0.00 2.57
4671 7665 6.658188 AGGGTTATCTCATCTTACACTAGC 57.342 41.667 0.00 0.00 0.00 3.42
4672 7666 5.241949 AGGGTTATCTCATCTTACACTAGCG 59.758 44.000 0.00 0.00 0.00 4.26
4673 7667 4.918583 GGTTATCTCATCTTACACTAGCGC 59.081 45.833 0.00 0.00 0.00 5.92
4674 7668 3.651803 ATCTCATCTTACACTAGCGCC 57.348 47.619 2.29 0.00 0.00 6.53
4675 7669 2.375146 TCTCATCTTACACTAGCGCCA 58.625 47.619 2.29 0.00 0.00 5.69
4676 7670 2.959030 TCTCATCTTACACTAGCGCCAT 59.041 45.455 2.29 0.00 0.00 4.40
4677 7671 3.055591 CTCATCTTACACTAGCGCCATG 58.944 50.000 2.29 2.03 0.00 3.66
4678 7672 2.430694 TCATCTTACACTAGCGCCATGT 59.569 45.455 2.29 9.06 0.00 3.21
4679 7673 3.118775 TCATCTTACACTAGCGCCATGTT 60.119 43.478 13.24 0.00 0.00 2.71
4680 7674 2.888594 TCTTACACTAGCGCCATGTTC 58.111 47.619 13.24 0.00 0.00 3.18
4681 7675 1.588404 CTTACACTAGCGCCATGTTCG 59.412 52.381 13.24 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.327464 TGAAGAGGAATGTGACATGACCA 59.673 43.478 19.08 0.00 0.00 4.02
11 12 3.937706 CTGAAGAGGAATGTGACATGACC 59.062 47.826 12.16 12.16 0.00 4.02
55 56 8.868522 TTGTAGATGAGTTCATTTGAATCCTT 57.131 30.769 0.00 0.00 36.57 3.36
135 136 7.118245 GGAATTGCCTAGAAGGTCAAAATTTTG 59.882 37.037 22.40 22.40 37.80 2.44
161 162 0.612174 TCCTCCTCAAGGTGGTCGAG 60.612 60.000 15.06 0.00 46.29 4.04
163 164 0.247736 CTTCCTCCTCAAGGTGGTCG 59.752 60.000 15.06 5.81 46.29 4.79
166 167 1.301293 GGCTTCCTCCTCAAGGTGG 59.699 63.158 10.35 10.35 46.32 4.61
172 173 0.252881 ACCAGATGGCTTCCTCCTCA 60.253 55.000 0.00 0.00 39.32 3.86
178 179 1.372087 CGAGCAACCAGATGGCTTCC 61.372 60.000 0.00 0.00 38.15 3.46
182 183 2.456119 CGACGAGCAACCAGATGGC 61.456 63.158 0.00 0.00 39.32 4.40
197 198 4.131088 GACCACCTCGGCTCCGAC 62.131 72.222 6.95 0.00 44.01 4.79
220 221 2.165030 CTCAATGCCATTTCCACCTGAC 59.835 50.000 0.00 0.00 0.00 3.51
223 224 2.622452 CCTCTCAATGCCATTTCCACCT 60.622 50.000 0.00 0.00 0.00 4.00
228 229 0.749049 GGCCCTCTCAATGCCATTTC 59.251 55.000 0.00 0.00 44.70 2.17
233 234 1.686325 TACGAGGCCCTCTCAATGCC 61.686 60.000 9.52 0.00 45.70 4.40
250 251 0.872021 CTGCTTCGGATGGCGTCTAC 60.872 60.000 6.67 0.00 0.00 2.59
256 257 2.437359 ACTGCTGCTTCGGATGGC 60.437 61.111 0.00 0.00 0.00 4.40
270 271 4.803426 GACCGAGCCGAGCCACTG 62.803 72.222 0.00 0.00 0.00 3.66
292 293 0.110688 CATTGCTGACCACGTGAACG 60.111 55.000 19.30 2.42 46.33 3.95
297 298 0.465460 ACAACCATTGCTGACCACGT 60.465 50.000 0.00 0.00 0.00 4.49
379 390 3.735029 GTCGCTCCGGACAGTCGT 61.735 66.667 0.00 0.00 36.91 4.34
388 399 4.344474 GATAGCCCCGTCGCTCCG 62.344 72.222 0.00 0.00 40.39 4.63
389 400 4.344474 CGATAGCCCCGTCGCTCC 62.344 72.222 0.00 0.00 40.39 4.70
390 401 4.344474 CCGATAGCCCCGTCGCTC 62.344 72.222 0.00 0.00 40.39 5.03
425 436 3.515316 CTGTCGTTGGTCCACCGCT 62.515 63.158 3.52 0.00 39.43 5.52
459 471 0.802607 GACAGTCGCCGACCTGATTC 60.803 60.000 14.60 3.14 32.18 2.52
470 482 3.343788 CTCTCACCCCGACAGTCGC 62.344 68.421 18.02 0.00 38.82 5.19
471 483 2.701780 CCTCTCACCCCGACAGTCG 61.702 68.421 16.50 16.50 40.07 4.18
472 484 3.007973 GCCTCTCACCCCGACAGTC 62.008 68.421 0.00 0.00 0.00 3.51
473 485 2.997897 GCCTCTCACCCCGACAGT 60.998 66.667 0.00 0.00 0.00 3.55
529 541 1.335872 ACAAAGCTATGTGGCGCAAAC 60.336 47.619 10.83 7.74 37.29 2.93
530 542 0.958091 ACAAAGCTATGTGGCGCAAA 59.042 45.000 10.83 0.00 37.29 3.68
535 547 2.155539 CGCAAAAACAAAGCTATGTGGC 59.844 45.455 0.00 0.00 32.81 5.01
541 553 2.159170 ACTTGCCGCAAAAACAAAGCTA 60.159 40.909 7.33 0.00 0.00 3.32
543 555 1.006086 ACTTGCCGCAAAAACAAAGC 58.994 45.000 7.33 0.00 0.00 3.51
549 562 2.675519 CAAGCACTTGCCGCAAAAA 58.324 47.368 7.33 0.00 43.38 1.94
561 574 6.744537 GCTGTAAATATATAGCATGCAAGCAC 59.255 38.462 21.98 2.57 43.53 4.40
569 582 5.586243 CCCTTGCGCTGTAAATATATAGCAT 59.414 40.000 9.73 0.00 44.07 3.79
579 592 0.179015 TCAACCCCTTGCGCTGTAAA 60.179 50.000 9.73 0.00 0.00 2.01
585 598 1.285950 GAACTTCAACCCCTTGCGC 59.714 57.895 0.00 0.00 0.00 6.09
587 600 0.961753 CCTGAACTTCAACCCCTTGC 59.038 55.000 0.00 0.00 0.00 4.01
618 631 9.434275 TCCTATCTCTATATTTTGTGGTCTCAA 57.566 33.333 0.00 0.00 0.00 3.02
640 653 9.184523 CCAAAATAATACTCCAACATTGTCCTA 57.815 33.333 0.00 0.00 0.00 2.94
644 657 8.405531 CGATCCAAAATAATACTCCAACATTGT 58.594 33.333 0.00 0.00 0.00 2.71
645 658 8.620416 TCGATCCAAAATAATACTCCAACATTG 58.380 33.333 0.00 0.00 0.00 2.82
647 660 8.746052 TTCGATCCAAAATAATACTCCAACAT 57.254 30.769 0.00 0.00 0.00 2.71
649 662 9.450807 CATTTCGATCCAAAATAATACTCCAAC 57.549 33.333 0.00 0.00 0.00 3.77
669 682 7.959651 CCAGAAAACTGTTCTTAGATCATTTCG 59.040 37.037 10.90 7.93 31.45 3.46
676 689 4.985538 TGCCCAGAAAACTGTTCTTAGAT 58.014 39.130 0.00 0.00 0.00 1.98
678 691 3.057946 GCTGCCCAGAAAACTGTTCTTAG 60.058 47.826 0.00 0.00 0.00 2.18
682 695 1.000938 CAGCTGCCCAGAAAACTGTTC 60.001 52.381 0.00 0.00 0.00 3.18
708 721 5.531287 GTGGACAATGATATCCTTAACCCAC 59.469 44.000 15.54 15.54 35.86 4.61
710 723 5.070685 GGTGGACAATGATATCCTTAACCC 58.929 45.833 0.00 0.33 35.86 4.11
711 724 5.941788 AGGTGGACAATGATATCCTTAACC 58.058 41.667 0.00 4.71 35.86 2.85
712 725 7.444487 GGTTAGGTGGACAATGATATCCTTAAC 59.556 40.741 0.00 0.06 35.86 2.01
713 726 7.128109 TGGTTAGGTGGACAATGATATCCTTAA 59.872 37.037 0.00 0.00 35.86 1.85
716 729 4.975147 TGGTTAGGTGGACAATGATATCCT 59.025 41.667 0.00 0.00 35.86 3.24
717 730 5.304686 TGGTTAGGTGGACAATGATATCC 57.695 43.478 0.00 0.00 35.37 2.59
718 731 6.773638 AGATGGTTAGGTGGACAATGATATC 58.226 40.000 0.00 0.00 0.00 1.63
720 733 5.665360 TGAGATGGTTAGGTGGACAATGATA 59.335 40.000 0.00 0.00 0.00 2.15
721 734 4.474651 TGAGATGGTTAGGTGGACAATGAT 59.525 41.667 0.00 0.00 0.00 2.45
722 735 3.843619 TGAGATGGTTAGGTGGACAATGA 59.156 43.478 0.00 0.00 0.00 2.57
723 736 4.220693 TGAGATGGTTAGGTGGACAATG 57.779 45.455 0.00 0.00 0.00 2.82
724 737 4.927267 TTGAGATGGTTAGGTGGACAAT 57.073 40.909 0.00 0.00 0.00 2.71
725 738 4.288366 TGATTGAGATGGTTAGGTGGACAA 59.712 41.667 0.00 0.00 0.00 3.18
728 741 3.843619 TGTGATTGAGATGGTTAGGTGGA 59.156 43.478 0.00 0.00 0.00 4.02
730 743 4.194640 CCTGTGATTGAGATGGTTAGGTG 58.805 47.826 0.00 0.00 0.00 4.00
732 745 4.494091 ACCTGTGATTGAGATGGTTAGG 57.506 45.455 0.00 0.00 0.00 2.69
733 746 4.637534 CCAACCTGTGATTGAGATGGTTAG 59.362 45.833 0.00 0.00 36.22 2.34
735 748 3.181429 ACCAACCTGTGATTGAGATGGTT 60.181 43.478 0.00 0.00 36.57 3.67
736 749 2.376518 ACCAACCTGTGATTGAGATGGT 59.623 45.455 0.00 0.00 35.20 3.55
738 751 4.074259 TGAACCAACCTGTGATTGAGATG 58.926 43.478 0.00 0.00 0.00 2.90
739 752 4.074970 GTGAACCAACCTGTGATTGAGAT 58.925 43.478 0.00 0.00 0.00 2.75
742 755 2.158885 TCGTGAACCAACCTGTGATTGA 60.159 45.455 0.00 0.00 0.00 2.57
743 756 2.217750 TCGTGAACCAACCTGTGATTG 58.782 47.619 0.00 0.00 0.00 2.67
745 758 2.859165 ATCGTGAACCAACCTGTGAT 57.141 45.000 0.00 0.00 0.00 3.06
746 759 2.631160 AATCGTGAACCAACCTGTGA 57.369 45.000 0.00 0.00 0.00 3.58
747 760 3.708563 AAAATCGTGAACCAACCTGTG 57.291 42.857 0.00 0.00 0.00 3.66
749 762 4.040445 ACAAAAATCGTGAACCAACCTG 57.960 40.909 0.00 0.00 0.00 4.00
750 763 7.513371 TTATACAAAAATCGTGAACCAACCT 57.487 32.000 0.00 0.00 0.00 3.50
782 855 4.797743 AGTCTCAGTCCATGCTATAGTCA 58.202 43.478 0.84 0.55 0.00 3.41
867 948 5.449177 GCTTTTCAGCTACAACAAACTCAGT 60.449 40.000 0.00 0.00 43.51 3.41
908 989 0.876342 GATGGACGGTTCAGATCGGC 60.876 60.000 0.00 0.00 0.00 5.54
985 1067 1.893062 CCATCAGGAGTCACGAGCA 59.107 57.895 0.00 0.00 36.89 4.26
1119 1201 4.660938 GCCCTGGTCTTGCCGGTT 62.661 66.667 1.90 0.00 42.20 4.44
1142 1224 2.598394 TGCTGTCCTTGGCCTTGC 60.598 61.111 3.32 0.00 0.00 4.01
1329 1411 0.456221 CTAGGGTGCAGTCGACGAAT 59.544 55.000 10.46 0.00 0.00 3.34
1386 1468 2.159435 CGGAAAGGTAAATGCGAAAGGG 60.159 50.000 0.00 0.00 31.57 3.95
1397 1479 2.519826 CGCGACAACGGAAAGGTAA 58.480 52.632 0.00 0.00 40.15 2.85
1443 1525 7.868415 GGTACAGGCATTCAATTCTACTAGTAG 59.132 40.741 21.87 21.87 34.56 2.57
1444 1526 7.469594 CGGTACAGGCATTCAATTCTACTAGTA 60.470 40.741 1.89 1.89 0.00 1.82
1445 1527 6.583562 GGTACAGGCATTCAATTCTACTAGT 58.416 40.000 0.00 0.00 0.00 2.57
1446 1528 5.692204 CGGTACAGGCATTCAATTCTACTAG 59.308 44.000 0.00 0.00 0.00 2.57
1447 1529 5.597806 CGGTACAGGCATTCAATTCTACTA 58.402 41.667 0.00 0.00 0.00 1.82
1448 1530 4.442706 CGGTACAGGCATTCAATTCTACT 58.557 43.478 0.00 0.00 0.00 2.57
1449 1531 3.002348 GCGGTACAGGCATTCAATTCTAC 59.998 47.826 0.00 0.00 0.00 2.59
1450 1532 3.118408 AGCGGTACAGGCATTCAATTCTA 60.118 43.478 10.30 0.00 0.00 2.10
1451 1533 2.017049 GCGGTACAGGCATTCAATTCT 58.983 47.619 0.00 0.00 0.00 2.40
1452 1534 2.017049 AGCGGTACAGGCATTCAATTC 58.983 47.619 10.30 0.00 0.00 2.17
1453 1535 1.745087 CAGCGGTACAGGCATTCAATT 59.255 47.619 10.30 0.00 0.00 2.32
1454 1536 1.340017 ACAGCGGTACAGGCATTCAAT 60.340 47.619 10.30 0.00 0.00 2.57
1470 1552 2.815647 GGTCACAGCGCCTACAGC 60.816 66.667 2.29 0.00 38.52 4.40
1471 1553 1.153745 GAGGTCACAGCGCCTACAG 60.154 63.158 2.29 0.00 34.81 2.74
1472 1554 1.468506 TTGAGGTCACAGCGCCTACA 61.469 55.000 2.29 0.00 34.81 2.74
1473 1555 0.108138 ATTGAGGTCACAGCGCCTAC 60.108 55.000 2.29 0.00 34.81 3.18
1474 1556 0.108186 CATTGAGGTCACAGCGCCTA 60.108 55.000 2.29 0.00 34.81 3.93
1475 1557 1.376424 CATTGAGGTCACAGCGCCT 60.376 57.895 2.29 0.00 37.91 5.52
1476 1558 1.237285 AACATTGAGGTCACAGCGCC 61.237 55.000 2.29 0.00 0.00 6.53
1477 1559 1.438651 TAACATTGAGGTCACAGCGC 58.561 50.000 0.00 0.00 0.00 5.92
1480 1562 3.127548 GCACCATAACATTGAGGTCACAG 59.872 47.826 0.00 0.00 30.44 3.66
1485 1567 3.719268 TGAGCACCATAACATTGAGGT 57.281 42.857 0.00 0.00 33.91 3.85
1487 1569 5.803461 CACAAATGAGCACCATAACATTGAG 59.197 40.000 0.00 0.00 34.45 3.02
1497 1579 0.542467 ATGGGCACAAATGAGCACCA 60.542 50.000 0.00 12.57 36.81 4.17
1498 1580 1.473258 TATGGGCACAAATGAGCACC 58.527 50.000 0.00 3.62 34.02 5.01
1530 1612 7.591421 TCATCTGTTATCCCAAGACGTATTA 57.409 36.000 0.00 0.00 0.00 0.98
1534 1616 4.443457 CCATCATCTGTTATCCCAAGACGT 60.443 45.833 0.00 0.00 0.00 4.34
1544 1626 1.417517 TGCGCCTCCATCATCTGTTAT 59.582 47.619 4.18 0.00 0.00 1.89
1545 1627 0.829990 TGCGCCTCCATCATCTGTTA 59.170 50.000 4.18 0.00 0.00 2.41
1546 1628 0.745845 GTGCGCCTCCATCATCTGTT 60.746 55.000 4.18 0.00 0.00 3.16
1754 1837 3.064987 ATCCGCCAGGTTCTCGTCG 62.065 63.158 0.00 0.00 39.05 5.12
1762 1845 3.628646 GACAAGCCATCCGCCAGGT 62.629 63.158 0.00 0.00 38.78 4.00
1777 1860 1.002257 ATGCCATCAACGCCAGACA 60.002 52.632 0.00 0.00 0.00 3.41
1784 1867 0.863799 CGATGAGGATGCCATCAACG 59.136 55.000 7.06 4.67 40.17 4.10
1790 1873 1.071228 CCAAGATCGATGAGGATGCCA 59.929 52.381 0.54 0.00 0.00 4.92
1793 1876 2.538512 TGCCAAGATCGATGAGGATG 57.461 50.000 0.54 0.00 0.00 3.51
1873 1956 0.413037 TGGGTCAGCCAATGGGAAAT 59.587 50.000 0.00 0.00 35.59 2.17
1914 1997 3.134804 CCCCTATCTGACCTGTTAACCTG 59.865 52.174 2.48 0.00 0.00 4.00
2004 2300 6.872628 AAAAACCAGTAAGGCTGTAAGTAC 57.127 37.500 0.00 0.00 43.55 2.73
2075 2373 6.253727 CGTGATTGTAGTAAGTAGCAAAGAGG 59.746 42.308 0.00 0.00 0.00 3.69
2078 2376 5.347635 TGCGTGATTGTAGTAAGTAGCAAAG 59.652 40.000 0.00 0.00 0.00 2.77
2171 2470 6.973843 TCATGCTATCTGCCAATAAAATGAC 58.026 36.000 0.00 0.00 42.00 3.06
2217 2516 7.282224 ACTGTGTGATTGGCATTATAAATACGT 59.718 33.333 0.00 0.00 0.00 3.57
2224 2523 7.966812 AGATAGACTGTGTGATTGGCATTATA 58.033 34.615 0.00 0.00 0.00 0.98
2398 2697 8.877864 TTTGGACATTACTAATTCACCAAGAT 57.122 30.769 0.00 0.00 37.44 2.40
2451 2750 5.673337 AGCAGTACACAATTGTAACACAG 57.327 39.130 11.53 7.46 40.00 3.66
2461 2760 7.070074 AGCTATAGGTTAGAAGCAGTACACAAT 59.930 37.037 0.00 0.00 37.44 2.71
2582 2881 3.094572 CTCTGAAGGGATTGCCAATTGT 58.905 45.455 4.43 0.00 35.15 2.71
2647 2946 3.003480 GGATAAGTTTGACAAGCTCGCT 58.997 45.455 4.91 0.00 0.00 4.93
3190 3818 1.291184 CGTCCTCAATGTCAGCGCAA 61.291 55.000 11.47 0.00 0.00 4.85
3205 3833 2.403252 ACCATGGTTCATCTTCGTCC 57.597 50.000 13.00 0.00 0.00 4.79
3274 3902 4.041198 TCTTCGTCTTGTGAAGGGGTTATT 59.959 41.667 3.19 0.00 42.43 1.40
3292 3920 7.190920 ACACCTTTGATTTAGTTTCTCTTCG 57.809 36.000 0.00 0.00 0.00 3.79
3363 3996 4.151121 TCCTTCACAAATTTGCATCCAGA 58.849 39.130 18.12 5.80 0.00 3.86
3370 4003 4.309099 TCAGCAATCCTTCACAAATTTGC 58.691 39.130 18.12 0.58 0.00 3.68
3383 4016 4.493547 CTCGATAATCTCCTCAGCAATCC 58.506 47.826 0.00 0.00 0.00 3.01
3461 4094 5.003804 TGAGCTAAGTTTCAGGTGATTTCC 58.996 41.667 0.00 0.00 0.00 3.13
3488 4121 2.239907 AGCAAAGACCTCCTATTCACCC 59.760 50.000 0.00 0.00 0.00 4.61
3535 4210 7.361457 TCTGGACTAACATAACCCTCTTATG 57.639 40.000 0.00 0.00 38.12 1.90
3536 4211 7.624077 ACTTCTGGACTAACATAACCCTCTTAT 59.376 37.037 0.00 0.00 0.00 1.73
3538 4213 5.785940 ACTTCTGGACTAACATAACCCTCTT 59.214 40.000 0.00 0.00 0.00 2.85
3548 4223 8.475639 GGTGAGATTATTACTTCTGGACTAACA 58.524 37.037 0.00 0.00 0.00 2.41
3610 4286 8.540388 AGGTGACAAACAGAGTACAATATACAT 58.460 33.333 0.00 0.00 0.00 2.29
3631 4307 2.430465 GCATCTTGCAAGAGAAGGTGA 58.570 47.619 31.14 9.13 44.26 4.02
3720 4396 1.119684 GGGAACAGTTTTTGCACCCT 58.880 50.000 0.00 0.00 40.28 4.34
3721 4397 0.827368 TGGGAACAGTTTTTGCACCC 59.173 50.000 0.00 0.00 42.33 4.61
3733 4409 3.636231 CCCTGGTCGCTGGGAACA 61.636 66.667 12.15 12.15 46.15 3.18
3734 4410 3.637273 ACCCTGGTCGCTGGGAAC 61.637 66.667 11.18 2.36 46.15 3.62
3735 4411 3.636231 CACCCTGGTCGCTGGGAA 61.636 66.667 11.18 0.00 46.15 3.97
3738 4414 4.335647 AAGCACCCTGGTCGCTGG 62.336 66.667 7.75 0.00 34.52 4.85
3739 4415 3.052082 CAAGCACCCTGGTCGCTG 61.052 66.667 7.75 0.34 34.52 5.18
3740 4416 3.120086 AACAAGCACCCTGGTCGCT 62.120 57.895 1.51 1.51 35.29 4.93
3741 4417 2.594592 AACAAGCACCCTGGTCGC 60.595 61.111 0.00 0.00 0.00 5.19
3742 4418 1.525995 ACAACAAGCACCCTGGTCG 60.526 57.895 0.00 0.00 0.00 4.79
3743 4419 0.751643 ACACAACAAGCACCCTGGTC 60.752 55.000 0.00 0.00 0.00 4.02
3744 4420 0.324275 AACACAACAAGCACCCTGGT 60.324 50.000 0.00 0.00 0.00 4.00
3745 4421 0.102844 CAACACAACAAGCACCCTGG 59.897 55.000 0.00 0.00 0.00 4.45
3746 4422 0.528249 GCAACACAACAAGCACCCTG 60.528 55.000 0.00 0.00 0.00 4.45
3747 4423 0.684153 AGCAACACAACAAGCACCCT 60.684 50.000 0.00 0.00 0.00 4.34
3780 4456 1.617804 CCCCCGAGTGGTACAGAACTA 60.618 57.143 0.00 0.00 41.80 2.24
3821 6173 4.309950 ACTTCCACCGGTGTCCGC 62.310 66.667 31.80 0.00 46.86 5.54
3825 6177 3.857038 ACGCACTTCCACCGGTGT 61.857 61.111 31.80 11.94 36.03 4.16
3826 6178 3.345808 CACGCACTTCCACCGGTG 61.346 66.667 28.26 28.26 36.62 4.94
3827 6179 2.879813 AAACACGCACTTCCACCGGT 62.880 55.000 0.00 0.00 0.00 5.28
3828 6180 2.184167 AAACACGCACTTCCACCGG 61.184 57.895 0.00 0.00 0.00 5.28
3844 6205 3.506743 TGCTCCAGCCCCACCAAA 61.507 61.111 0.00 0.00 41.18 3.28
3845 6206 3.970410 CTGCTCCAGCCCCACCAA 61.970 66.667 0.00 0.00 41.18 3.67
3874 6235 4.925786 CGAAAATCGCCGACTTCG 57.074 55.556 15.79 15.79 35.26 3.79
3902 6263 2.033424 CGCAGAACATCCTCGTAGATGA 59.967 50.000 19.55 0.00 45.43 2.92
3910 6271 1.936547 GTCAATCCGCAGAACATCCTC 59.063 52.381 0.00 0.00 0.00 3.71
3949 6310 4.933400 GGAAAAGTTGTAGTAATCGGCTGA 59.067 41.667 0.00 0.00 0.00 4.26
3951 6312 4.901868 TGGAAAAGTTGTAGTAATCGGCT 58.098 39.130 0.00 0.00 0.00 5.52
3952 6313 4.933400 TCTGGAAAAGTTGTAGTAATCGGC 59.067 41.667 0.00 0.00 0.00 5.54
3957 6318 7.929785 CCTAACACTCTGGAAAAGTTGTAGTAA 59.070 37.037 0.00 0.00 0.00 2.24
3991 6352 2.224209 CCACCACTCGTTGAGGTAAACT 60.224 50.000 0.00 0.00 37.54 2.66
3994 6355 1.707106 TCCACCACTCGTTGAGGTAA 58.293 50.000 0.00 0.00 37.54 2.85
3996 6357 1.056660 ATTCCACCACTCGTTGAGGT 58.943 50.000 0.00 0.00 40.30 3.85
3997 6358 2.185004 AATTCCACCACTCGTTGAGG 57.815 50.000 0.00 0.00 33.35 3.86
3998 6359 2.350772 GCAAATTCCACCACTCGTTGAG 60.351 50.000 0.00 0.00 35.52 3.02
3999 6360 1.606668 GCAAATTCCACCACTCGTTGA 59.393 47.619 0.00 0.00 0.00 3.18
4000 6361 1.662876 CGCAAATTCCACCACTCGTTG 60.663 52.381 0.00 0.00 0.00 4.10
4001 6362 0.591170 CGCAAATTCCACCACTCGTT 59.409 50.000 0.00 0.00 0.00 3.85
4002 6363 0.534203 ACGCAAATTCCACCACTCGT 60.534 50.000 0.00 0.00 0.00 4.18
4003 6364 1.434555 TACGCAAATTCCACCACTCG 58.565 50.000 0.00 0.00 0.00 4.18
4129 6663 4.236527 ACACCAGATATTGAACCTTCCC 57.763 45.455 0.00 0.00 0.00 3.97
4157 7136 3.053395 AGGAAAGGCAGCCATATTCTGAA 60.053 43.478 15.80 0.00 33.54 3.02
4238 7217 5.494390 AAACGTGGTAGGATAAGAGGTTT 57.506 39.130 0.00 0.00 0.00 3.27
4264 7243 8.165239 TCACTGCAGTTATAGACAAAACAAAT 57.835 30.769 18.94 0.00 0.00 2.32
4403 7382 8.908786 TCTGATCAGTTACAGTTCTTTTGAAT 57.091 30.769 21.92 0.00 40.94 2.57
4469 7463 6.756074 CCATAATGGCATTGTTCGTGTAAAAT 59.244 34.615 22.57 0.55 0.00 1.82
4523 7517 7.630082 ACTAATTGACACATATAACCTGGTGT 58.370 34.615 0.00 0.00 46.31 4.16
4541 7535 6.176975 TGCATGAAAGGTAACGACTAATTG 57.823 37.500 0.00 0.00 46.39 2.32
4542 7536 6.823689 AGATGCATGAAAGGTAACGACTAATT 59.176 34.615 2.46 0.00 46.39 1.40
4543 7537 6.349300 AGATGCATGAAAGGTAACGACTAAT 58.651 36.000 2.46 0.00 46.39 1.73
4544 7538 5.730550 AGATGCATGAAAGGTAACGACTAA 58.269 37.500 2.46 0.00 46.39 2.24
4545 7539 5.127194 AGAGATGCATGAAAGGTAACGACTA 59.873 40.000 2.46 0.00 46.39 2.59
4546 7540 4.081420 AGAGATGCATGAAAGGTAACGACT 60.081 41.667 2.46 0.00 46.39 4.18
4547 7541 4.184629 AGAGATGCATGAAAGGTAACGAC 58.815 43.478 2.46 0.00 46.39 4.34
4548 7542 4.471904 AGAGATGCATGAAAGGTAACGA 57.528 40.909 2.46 0.00 46.39 3.85
4549 7543 6.662414 TTAAGAGATGCATGAAAGGTAACG 57.338 37.500 2.46 0.00 46.39 3.18
4550 7544 8.341173 CAGATTAAGAGATGCATGAAAGGTAAC 58.659 37.037 2.46 0.00 0.00 2.50
4551 7545 8.267183 TCAGATTAAGAGATGCATGAAAGGTAA 58.733 33.333 2.46 0.00 0.00 2.85
4552 7546 7.795047 TCAGATTAAGAGATGCATGAAAGGTA 58.205 34.615 2.46 0.00 0.00 3.08
4553 7547 6.656902 TCAGATTAAGAGATGCATGAAAGGT 58.343 36.000 2.46 0.00 0.00 3.50
4554 7548 6.293516 GCTCAGATTAAGAGATGCATGAAAGG 60.294 42.308 2.46 0.00 35.09 3.11
4555 7549 6.260271 TGCTCAGATTAAGAGATGCATGAAAG 59.740 38.462 2.46 0.00 35.09 2.62
4556 7550 6.037940 GTGCTCAGATTAAGAGATGCATGAAA 59.962 38.462 2.46 0.00 35.09 2.69
4557 7551 5.526479 GTGCTCAGATTAAGAGATGCATGAA 59.474 40.000 2.46 0.00 35.09 2.57
4558 7552 5.055144 GTGCTCAGATTAAGAGATGCATGA 58.945 41.667 2.46 0.00 35.09 3.07
4559 7553 4.084485 CGTGCTCAGATTAAGAGATGCATG 60.084 45.833 2.46 0.00 35.09 4.06
4560 7554 4.056740 CGTGCTCAGATTAAGAGATGCAT 58.943 43.478 0.00 0.00 35.09 3.96
4561 7555 3.131046 TCGTGCTCAGATTAAGAGATGCA 59.869 43.478 0.00 0.00 35.09 3.96
4562 7556 3.489047 GTCGTGCTCAGATTAAGAGATGC 59.511 47.826 0.00 0.00 35.09 3.91
4563 7557 4.047822 GGTCGTGCTCAGATTAAGAGATG 58.952 47.826 0.00 0.00 35.09 2.90
4564 7558 3.701542 TGGTCGTGCTCAGATTAAGAGAT 59.298 43.478 0.00 0.00 35.09 2.75
4565 7559 3.089284 TGGTCGTGCTCAGATTAAGAGA 58.911 45.455 0.00 0.00 35.09 3.10
4566 7560 3.182967 GTGGTCGTGCTCAGATTAAGAG 58.817 50.000 0.00 0.00 36.21 2.85
4567 7561 2.560981 TGTGGTCGTGCTCAGATTAAGA 59.439 45.455 0.00 0.00 0.00 2.10
4568 7562 2.959516 TGTGGTCGTGCTCAGATTAAG 58.040 47.619 0.00 0.00 0.00 1.85
4569 7563 3.394674 TTGTGGTCGTGCTCAGATTAA 57.605 42.857 0.00 0.00 0.00 1.40
4570 7564 3.394674 TTTGTGGTCGTGCTCAGATTA 57.605 42.857 0.00 0.00 0.00 1.75
4571 7565 2.254546 TTTGTGGTCGTGCTCAGATT 57.745 45.000 0.00 0.00 0.00 2.40
4572 7566 2.254546 TTTTGTGGTCGTGCTCAGAT 57.745 45.000 0.00 0.00 0.00 2.90
4573 7567 2.254546 ATTTTGTGGTCGTGCTCAGA 57.745 45.000 0.00 0.00 0.00 3.27
4574 7568 3.325870 TCTATTTTGTGGTCGTGCTCAG 58.674 45.455 0.00 0.00 0.00 3.35
4575 7569 3.394674 TCTATTTTGTGGTCGTGCTCA 57.605 42.857 0.00 0.00 0.00 4.26
4576 7570 4.946784 ATTCTATTTTGTGGTCGTGCTC 57.053 40.909 0.00 0.00 0.00 4.26
4577 7571 4.082787 CCAATTCTATTTTGTGGTCGTGCT 60.083 41.667 0.00 0.00 0.00 4.40
4578 7572 4.165779 CCAATTCTATTTTGTGGTCGTGC 58.834 43.478 0.00 0.00 0.00 5.34
4579 7573 4.165779 GCCAATTCTATTTTGTGGTCGTG 58.834 43.478 0.00 0.00 0.00 4.35
4580 7574 3.823873 TGCCAATTCTATTTTGTGGTCGT 59.176 39.130 0.00 0.00 0.00 4.34
4581 7575 4.165779 GTGCCAATTCTATTTTGTGGTCG 58.834 43.478 0.00 0.00 0.00 4.79
4582 7576 4.165779 CGTGCCAATTCTATTTTGTGGTC 58.834 43.478 0.00 0.00 0.00 4.02
4583 7577 3.572255 ACGTGCCAATTCTATTTTGTGGT 59.428 39.130 0.00 0.00 0.00 4.16
4584 7578 3.919804 CACGTGCCAATTCTATTTTGTGG 59.080 43.478 0.82 0.00 0.00 4.17
4585 7579 4.793071 TCACGTGCCAATTCTATTTTGTG 58.207 39.130 11.67 0.00 0.00 3.33
4586 7580 5.446143 TTCACGTGCCAATTCTATTTTGT 57.554 34.783 11.67 0.00 0.00 2.83
4587 7581 6.808212 AGATTTCACGTGCCAATTCTATTTTG 59.192 34.615 11.67 0.00 0.00 2.44
4588 7582 6.924111 AGATTTCACGTGCCAATTCTATTTT 58.076 32.000 11.67 0.00 0.00 1.82
4589 7583 6.515272 AGATTTCACGTGCCAATTCTATTT 57.485 33.333 11.67 0.00 0.00 1.40
4590 7584 7.807977 ATAGATTTCACGTGCCAATTCTATT 57.192 32.000 18.95 10.26 27.87 1.73
4591 7585 8.902540 TTATAGATTTCACGTGCCAATTCTAT 57.097 30.769 23.54 23.54 33.17 1.98
4592 7586 7.985184 ACTTATAGATTTCACGTGCCAATTCTA 59.015 33.333 11.67 15.32 0.00 2.10
4593 7587 6.823689 ACTTATAGATTTCACGTGCCAATTCT 59.176 34.615 11.67 13.76 0.00 2.40
4594 7588 7.016361 ACTTATAGATTTCACGTGCCAATTC 57.984 36.000 11.67 7.17 0.00 2.17
4595 7589 8.677148 ATACTTATAGATTTCACGTGCCAATT 57.323 30.769 11.67 0.00 0.00 2.32
4596 7590 9.944376 ATATACTTATAGATTTCACGTGCCAAT 57.056 29.630 11.67 11.48 0.00 3.16
4613 7607 9.589461 CCGACTCAGGGGAATATATATACTTAT 57.411 37.037 0.00 0.00 0.00 1.73
4614 7608 8.991783 CCGACTCAGGGGAATATATATACTTA 57.008 38.462 0.00 0.00 0.00 2.24
4615 7609 7.899648 CCGACTCAGGGGAATATATATACTT 57.100 40.000 0.00 0.00 0.00 2.24
4630 7624 1.580845 CTTTGCTTGCCCGACTCAGG 61.581 60.000 0.00 0.00 0.00 3.86
4631 7625 1.580845 CCTTTGCTTGCCCGACTCAG 61.581 60.000 0.00 0.00 0.00 3.35
4632 7626 1.600636 CCTTTGCTTGCCCGACTCA 60.601 57.895 0.00 0.00 0.00 3.41
4633 7627 2.335712 CCCTTTGCTTGCCCGACTC 61.336 63.158 0.00 0.00 0.00 3.36
4634 7628 2.282462 CCCTTTGCTTGCCCGACT 60.282 61.111 0.00 0.00 0.00 4.18
4635 7629 0.891904 TAACCCTTTGCTTGCCCGAC 60.892 55.000 0.00 0.00 0.00 4.79
4636 7630 0.039035 ATAACCCTTTGCTTGCCCGA 59.961 50.000 0.00 0.00 0.00 5.14
4637 7631 0.455815 GATAACCCTTTGCTTGCCCG 59.544 55.000 0.00 0.00 0.00 6.13
4638 7632 1.751351 GAGATAACCCTTTGCTTGCCC 59.249 52.381 0.00 0.00 0.00 5.36
4639 7633 2.446435 TGAGATAACCCTTTGCTTGCC 58.554 47.619 0.00 0.00 0.00 4.52
4640 7634 3.950395 AGATGAGATAACCCTTTGCTTGC 59.050 43.478 0.00 0.00 0.00 4.01
4641 7635 6.599244 TGTAAGATGAGATAACCCTTTGCTTG 59.401 38.462 0.00 0.00 0.00 4.01
4642 7636 6.599638 GTGTAAGATGAGATAACCCTTTGCTT 59.400 38.462 0.00 0.00 0.00 3.91
4643 7637 6.069963 AGTGTAAGATGAGATAACCCTTTGCT 60.070 38.462 0.00 0.00 0.00 3.91
4644 7638 6.116126 AGTGTAAGATGAGATAACCCTTTGC 58.884 40.000 0.00 0.00 0.00 3.68
4645 7639 7.439655 GCTAGTGTAAGATGAGATAACCCTTTG 59.560 40.741 0.00 0.00 0.00 2.77
4646 7640 7.501844 GCTAGTGTAAGATGAGATAACCCTTT 58.498 38.462 0.00 0.00 0.00 3.11
4647 7641 6.239064 CGCTAGTGTAAGATGAGATAACCCTT 60.239 42.308 0.00 0.00 0.00 3.95
4648 7642 5.241949 CGCTAGTGTAAGATGAGATAACCCT 59.758 44.000 0.00 0.00 0.00 4.34
4649 7643 5.462405 CGCTAGTGTAAGATGAGATAACCC 58.538 45.833 0.00 0.00 0.00 4.11
4650 7644 4.918583 GCGCTAGTGTAAGATGAGATAACC 59.081 45.833 0.00 0.00 0.00 2.85
4651 7645 4.918583 GGCGCTAGTGTAAGATGAGATAAC 59.081 45.833 7.64 0.00 0.00 1.89
4652 7646 4.583073 TGGCGCTAGTGTAAGATGAGATAA 59.417 41.667 7.64 0.00 0.00 1.75
4653 7647 4.142038 TGGCGCTAGTGTAAGATGAGATA 58.858 43.478 7.64 0.00 0.00 1.98
4654 7648 2.959030 TGGCGCTAGTGTAAGATGAGAT 59.041 45.455 7.64 0.00 0.00 2.75
4655 7649 2.375146 TGGCGCTAGTGTAAGATGAGA 58.625 47.619 7.64 0.00 0.00 3.27
4656 7650 2.871182 TGGCGCTAGTGTAAGATGAG 57.129 50.000 7.64 0.00 0.00 2.90
4657 7651 2.430694 ACATGGCGCTAGTGTAAGATGA 59.569 45.455 7.64 0.00 0.00 2.92
4658 7652 2.826428 ACATGGCGCTAGTGTAAGATG 58.174 47.619 7.64 0.00 0.00 2.90
4659 7653 3.458189 GAACATGGCGCTAGTGTAAGAT 58.542 45.455 7.64 0.00 0.00 2.40
4660 7654 2.734175 CGAACATGGCGCTAGTGTAAGA 60.734 50.000 7.64 0.00 0.00 2.10
4661 7655 1.588404 CGAACATGGCGCTAGTGTAAG 59.412 52.381 7.64 4.30 0.00 2.34
4662 7656 1.635844 CGAACATGGCGCTAGTGTAA 58.364 50.000 7.64 0.00 0.00 2.41
4663 7657 3.339061 CGAACATGGCGCTAGTGTA 57.661 52.632 7.64 0.00 0.00 2.90
4664 7658 4.185413 CGAACATGGCGCTAGTGT 57.815 55.556 7.64 7.22 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.