Multiple sequence alignment - TraesCS6B01G131800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G131800 chr6B 100.000 2633 0 0 1 2633 128903533 128906165 0 4863
1 TraesCS6B01G131800 chr6B 99.291 423 3 0 2211 2633 128912571 128912993 0 765
2 TraesCS6B01G131800 chr6B 99.057 424 4 0 2210 2633 87483068 87482645 0 761
3 TraesCS6B01G131800 chr6B 99.054 423 4 0 2211 2633 64093005 64093427 0 760
4 TraesCS6B01G131800 chr6B 98.818 423 5 0 2211 2633 87476254 87475832 0 754
5 TraesCS6B01G131800 chrUn 99.322 2213 12 2 1 2212 223706935 223704725 0 4000
6 TraesCS6B01G131800 chrUn 98.871 2214 20 2 1 2212 40085858 40088068 0 3945
7 TraesCS6B01G131800 chrUn 99.764 423 1 0 2211 2633 460570873 460571295 0 776
8 TraesCS6B01G131800 chr2A 99.322 2213 12 2 1 2212 605912878 605910668 0 4000
9 TraesCS6B01G131800 chr2A 99.291 423 3 0 2211 2633 380806182 380806604 0 765
10 TraesCS6B01G131800 chr2A 98.818 423 5 0 2211 2633 122317027 122316605 0 754
11 TraesCS6B01G131800 chr7B 99.006 2213 18 2 1 2212 698140159 698142368 0 3962
12 TraesCS6B01G131800 chr1B 99.006 2213 17 2 1 2212 683734143 683731935 0 3960
13 TraesCS6B01G131800 chr1B 98.690 2213 26 3 1 2212 583536772 583534562 0 3923
14 TraesCS6B01G131800 chr3B 98.825 2212 24 1 1 2212 92142923 92145132 0 3940
15 TraesCS6B01G131800 chr3B 98.734 2212 25 3 1 2212 92261855 92264063 0 3927
16 TraesCS6B01G131800 chr3D 98.779 2212 23 1 1 2212 202649730 202651937 0 3932
17 TraesCS6B01G131800 chr6A 99.764 423 1 0 2211 2633 307702581 307703003 0 776
18 TraesCS6B01G131800 chr6A 99.764 423 1 0 2211 2633 307709459 307709881 0 776


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G131800 chr6B 128903533 128906165 2632 False 4863 4863 100.000 1 2633 1 chr6B.!!$F2 2632
1 TraesCS6B01G131800 chrUn 223704725 223706935 2210 True 4000 4000 99.322 1 2212 1 chrUn.!!$R1 2211
2 TraesCS6B01G131800 chrUn 40085858 40088068 2210 False 3945 3945 98.871 1 2212 1 chrUn.!!$F1 2211
3 TraesCS6B01G131800 chr2A 605910668 605912878 2210 True 4000 4000 99.322 1 2212 1 chr2A.!!$R2 2211
4 TraesCS6B01G131800 chr7B 698140159 698142368 2209 False 3962 3962 99.006 1 2212 1 chr7B.!!$F1 2211
5 TraesCS6B01G131800 chr1B 683731935 683734143 2208 True 3960 3960 99.006 1 2212 1 chr1B.!!$R2 2211
6 TraesCS6B01G131800 chr1B 583534562 583536772 2210 True 3923 3923 98.690 1 2212 1 chr1B.!!$R1 2211
7 TraesCS6B01G131800 chr3B 92142923 92145132 2209 False 3940 3940 98.825 1 2212 1 chr3B.!!$F1 2211
8 TraesCS6B01G131800 chr3B 92261855 92264063 2208 False 3927 3927 98.734 1 2212 1 chr3B.!!$F2 2211
9 TraesCS6B01G131800 chr3D 202649730 202651937 2207 False 3932 3932 98.779 1 2212 1 chr3D.!!$F1 2211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 1561 1.529713 GGGTCGAAGGTTTTGGGCA 60.53 57.895 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2385 2391 0.026803 GCGTTCGGCACTTGATCATC 59.973 55.0 0.0 0.0 42.87 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1556 1561 1.529713 GGGTCGAAGGTTTTGGGCA 60.530 57.895 0.00 0.00 0.00 5.36
1574 1579 3.056754 ATGTAGCTTTCCCCGCCCC 62.057 63.158 0.00 0.00 0.00 5.80
1575 1580 4.501285 GTAGCTTTCCCCGCCCCC 62.501 72.222 0.00 0.00 0.00 5.40
1816 1822 5.360591 CACGCCTCCTATTCTATTTGTTCT 58.639 41.667 0.00 0.00 0.00 3.01
1843 1849 1.413767 CGGCGTGAACTCTGATTCGG 61.414 60.000 0.00 0.00 0.00 4.30
2223 2229 2.030862 GCGGTGTTGGGGAACGTA 59.969 61.111 0.00 0.00 0.00 3.57
2224 2230 2.030958 GCGGTGTTGGGGAACGTAG 61.031 63.158 0.00 0.00 0.00 3.51
2225 2231 2.030958 CGGTGTTGGGGAACGTAGC 61.031 63.158 0.00 0.00 0.00 3.58
2226 2232 1.071814 GGTGTTGGGGAACGTAGCA 59.928 57.895 0.00 0.00 0.00 3.49
2227 2233 0.953960 GGTGTTGGGGAACGTAGCAG 60.954 60.000 0.00 0.00 0.00 4.24
2228 2234 0.034337 GTGTTGGGGAACGTAGCAGA 59.966 55.000 0.00 0.00 0.00 4.26
2229 2235 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
2230 2236 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
2231 2237 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
2232 2238 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
2233 2239 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
2234 2240 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
2235 2241 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
2236 2242 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
2237 2243 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
2238 2244 5.336451 GGGGAACGTAGCAGAAATTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
2239 2245 6.156519 GGGAACGTAGCAGAAATTCAAAATT 58.843 36.000 0.00 0.00 0.00 1.82
2240 2246 6.645003 GGGAACGTAGCAGAAATTCAAAATTT 59.355 34.615 0.00 0.00 0.00 1.82
2241 2247 7.170828 GGGAACGTAGCAGAAATTCAAAATTTT 59.829 33.333 0.00 0.00 0.00 1.82
2242 2248 8.214472 GGAACGTAGCAGAAATTCAAAATTTTC 58.786 33.333 0.00 0.00 33.08 2.29
2243 2249 7.637709 ACGTAGCAGAAATTCAAAATTTTCC 57.362 32.000 0.00 0.00 33.30 3.13
2244 2250 7.433680 ACGTAGCAGAAATTCAAAATTTTCCT 58.566 30.769 0.00 0.86 33.30 3.36
2245 2251 8.573035 ACGTAGCAGAAATTCAAAATTTTCCTA 58.427 29.630 0.00 0.00 33.30 2.94
2246 2252 8.850452 CGTAGCAGAAATTCAAAATTTTCCTAC 58.150 33.333 0.00 13.60 33.30 3.18
2247 2253 7.873739 AGCAGAAATTCAAAATTTTCCTACG 57.126 32.000 0.00 0.00 33.30 3.51
2248 2254 7.433680 AGCAGAAATTCAAAATTTTCCTACGT 58.566 30.769 0.00 0.00 33.30 3.57
2249 2255 7.382218 AGCAGAAATTCAAAATTTTCCTACGTG 59.618 33.333 0.00 0.00 33.30 4.49
2250 2256 7.169140 GCAGAAATTCAAAATTTTCCTACGTGT 59.831 33.333 0.00 0.00 33.30 4.49
2251 2257 8.690840 CAGAAATTCAAAATTTTCCTACGTGTC 58.309 33.333 0.00 0.00 33.30 3.67
2252 2258 8.410141 AGAAATTCAAAATTTTCCTACGTGTCA 58.590 29.630 0.00 0.00 33.30 3.58
2253 2259 7.924103 AATTCAAAATTTTCCTACGTGTCAC 57.076 32.000 0.00 0.00 0.00 3.67
2254 2260 5.427036 TCAAAATTTTCCTACGTGTCACC 57.573 39.130 0.00 0.00 0.00 4.02
2255 2261 4.882427 TCAAAATTTTCCTACGTGTCACCA 59.118 37.500 0.00 0.00 0.00 4.17
2256 2262 5.357314 TCAAAATTTTCCTACGTGTCACCAA 59.643 36.000 0.00 0.00 0.00 3.67
2257 2263 5.432885 AAATTTTCCTACGTGTCACCAAG 57.567 39.130 0.00 0.00 0.00 3.61
2258 2264 3.823281 TTTTCCTACGTGTCACCAAGA 57.177 42.857 0.00 0.00 0.00 3.02
2259 2265 4.345859 TTTTCCTACGTGTCACCAAGAT 57.654 40.909 0.00 0.00 0.00 2.40
2260 2266 3.587797 TTCCTACGTGTCACCAAGATC 57.412 47.619 0.00 0.00 0.00 2.75
2261 2267 2.803956 TCCTACGTGTCACCAAGATCT 58.196 47.619 0.00 0.00 0.00 2.75
2262 2268 3.959293 TCCTACGTGTCACCAAGATCTA 58.041 45.455 0.00 0.00 0.00 1.98
2263 2269 4.533815 TCCTACGTGTCACCAAGATCTAT 58.466 43.478 0.00 0.00 0.00 1.98
2264 2270 4.579340 TCCTACGTGTCACCAAGATCTATC 59.421 45.833 0.00 0.00 0.00 2.08
2265 2271 4.580995 CCTACGTGTCACCAAGATCTATCT 59.419 45.833 0.00 0.00 39.22 1.98
2266 2272 5.763698 CCTACGTGTCACCAAGATCTATCTA 59.236 44.000 0.00 0.00 35.76 1.98
2267 2273 6.431543 CCTACGTGTCACCAAGATCTATCTAT 59.568 42.308 0.00 0.00 35.76 1.98
2268 2274 6.078202 ACGTGTCACCAAGATCTATCTATG 57.922 41.667 0.00 0.00 35.76 2.23
2269 2275 5.010112 ACGTGTCACCAAGATCTATCTATGG 59.990 44.000 8.57 8.57 39.18 2.74
2270 2276 5.241728 CGTGTCACCAAGATCTATCTATGGA 59.758 44.000 15.80 0.00 37.92 3.41
2271 2277 6.569418 CGTGTCACCAAGATCTATCTATGGAG 60.569 46.154 15.80 8.98 37.92 3.86
2272 2278 6.491745 GTGTCACCAAGATCTATCTATGGAGA 59.508 42.308 15.80 10.97 37.92 3.71
2273 2279 7.014711 GTGTCACCAAGATCTATCTATGGAGAA 59.985 40.741 15.80 3.96 36.96 2.87
2274 2280 7.565029 TGTCACCAAGATCTATCTATGGAGAAA 59.435 37.037 15.80 6.93 36.96 2.52
2275 2281 7.870445 GTCACCAAGATCTATCTATGGAGAAAC 59.130 40.741 15.80 5.75 36.96 2.78
2276 2282 7.015682 TCACCAAGATCTATCTATGGAGAAACC 59.984 40.741 15.80 0.00 37.92 3.27
2277 2283 6.846505 ACCAAGATCTATCTATGGAGAAACCA 59.153 38.462 15.80 0.00 44.28 3.67
2278 2284 7.016072 ACCAAGATCTATCTATGGAGAAACCAG 59.984 40.741 15.80 0.00 43.76 4.00
2279 2285 6.873076 CAAGATCTATCTATGGAGAAACCAGC 59.127 42.308 0.00 0.00 43.76 4.85
2280 2286 6.556495 AAGATCTATCTATGGAGAAACCAGCA 59.444 38.462 0.00 0.00 43.76 4.41
2281 2287 7.071698 AAGATCTATCTATGGAGAAACCAGCAA 59.928 37.037 0.00 0.00 43.76 3.91
2285 2291 3.305709 TGGAGAAACCAGCAACGAG 57.694 52.632 0.00 0.00 44.64 4.18
2286 2292 0.250295 TGGAGAAACCAGCAACGAGG 60.250 55.000 0.00 0.00 44.64 4.63
2287 2293 0.955919 GGAGAAACCAGCAACGAGGG 60.956 60.000 0.00 0.00 38.79 4.30
2288 2294 0.955919 GAGAAACCAGCAACGAGGGG 60.956 60.000 0.00 0.00 0.00 4.79
2289 2295 1.072505 GAAACCAGCAACGAGGGGA 59.927 57.895 0.00 0.00 0.00 4.81
2290 2296 0.536460 GAAACCAGCAACGAGGGGAA 60.536 55.000 0.00 0.00 0.00 3.97
2291 2297 0.537371 AAACCAGCAACGAGGGGAAG 60.537 55.000 0.00 0.00 0.00 3.46
2292 2298 2.045926 CCAGCAACGAGGGGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
2293 2299 2.592993 CCAGCAACGAGGGGAAGGA 61.593 63.158 0.00 0.00 0.00 3.36
2294 2300 1.078848 CAGCAACGAGGGGAAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
2295 2301 1.229209 AGCAACGAGGGGAAGGAGA 60.229 57.895 0.00 0.00 0.00 3.71
2296 2302 1.219393 GCAACGAGGGGAAGGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
2297 2303 1.545706 GCAACGAGGGGAAGGAGAGT 61.546 60.000 0.00 0.00 0.00 3.24
2298 2304 0.247736 CAACGAGGGGAAGGAGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
2299 2305 1.545706 AACGAGGGGAAGGAGAGTGC 61.546 60.000 0.00 0.00 0.00 4.40
2300 2306 1.984570 CGAGGGGAAGGAGAGTGCA 60.985 63.158 0.00 0.00 0.00 4.57
2301 2307 1.333636 CGAGGGGAAGGAGAGTGCAT 61.334 60.000 0.00 0.00 0.00 3.96
2302 2308 0.467804 GAGGGGAAGGAGAGTGCATC 59.532 60.000 0.00 0.00 0.00 3.91
2303 2309 0.043940 AGGGGAAGGAGAGTGCATCT 59.956 55.000 0.00 0.00 42.61 2.90
2304 2310 1.292242 AGGGGAAGGAGAGTGCATCTA 59.708 52.381 0.00 0.00 38.84 1.98
2305 2311 1.414550 GGGGAAGGAGAGTGCATCTAC 59.585 57.143 0.00 0.00 38.84 2.59
2306 2312 2.111384 GGGAAGGAGAGTGCATCTACA 58.889 52.381 9.98 0.00 42.01 2.74
2307 2313 2.703007 GGGAAGGAGAGTGCATCTACAT 59.297 50.000 9.98 0.00 42.01 2.29
2308 2314 3.898123 GGGAAGGAGAGTGCATCTACATA 59.102 47.826 9.98 0.00 42.01 2.29
2309 2315 4.262249 GGGAAGGAGAGTGCATCTACATAC 60.262 50.000 9.98 0.82 42.01 2.39
2310 2316 4.262249 GGAAGGAGAGTGCATCTACATACC 60.262 50.000 9.98 6.83 42.01 2.73
2311 2317 3.235200 AGGAGAGTGCATCTACATACCC 58.765 50.000 9.98 2.71 42.01 3.69
2312 2318 3.116939 AGGAGAGTGCATCTACATACCCT 60.117 47.826 9.98 4.47 42.01 4.34
2313 2319 3.643792 GGAGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 38.94 3.95
2314 2320 4.502259 GGAGAGTGCATCTACATACCCTTG 60.502 50.000 0.00 0.00 38.94 3.61
2315 2321 4.033709 AGAGTGCATCTACATACCCTTGT 58.966 43.478 0.00 0.00 36.10 3.16
2316 2322 5.208890 AGAGTGCATCTACATACCCTTGTA 58.791 41.667 0.00 0.00 36.10 2.41
2317 2323 5.303078 AGAGTGCATCTACATACCCTTGTAG 59.697 44.000 5.47 5.47 46.85 2.74
2326 2332 5.455056 ACATACCCTTGTAGATCGCTAAG 57.545 43.478 0.00 0.00 0.00 2.18
2327 2333 2.892784 ACCCTTGTAGATCGCTAAGC 57.107 50.000 0.00 0.00 0.00 3.09
2353 2359 1.670791 GTTCAAGTGAACGGGGTTGA 58.329 50.000 8.34 0.00 43.97 3.18
2354 2360 2.227194 GTTCAAGTGAACGGGGTTGAT 58.773 47.619 8.34 0.00 43.97 2.57
2355 2361 1.890876 TCAAGTGAACGGGGTTGATG 58.109 50.000 0.00 0.00 0.00 3.07
2356 2362 0.881118 CAAGTGAACGGGGTTGATGG 59.119 55.000 0.00 0.00 0.00 3.51
2357 2363 0.768622 AAGTGAACGGGGTTGATGGA 59.231 50.000 0.00 0.00 0.00 3.41
2358 2364 0.324943 AGTGAACGGGGTTGATGGAG 59.675 55.000 0.00 0.00 0.00 3.86
2359 2365 0.036306 GTGAACGGGGTTGATGGAGT 59.964 55.000 0.00 0.00 0.00 3.85
2360 2366 0.323629 TGAACGGGGTTGATGGAGTC 59.676 55.000 0.00 0.00 0.00 3.36
2361 2367 0.739813 GAACGGGGTTGATGGAGTCG 60.740 60.000 0.00 0.00 0.00 4.18
2362 2368 1.477685 AACGGGGTTGATGGAGTCGT 61.478 55.000 0.00 0.00 0.00 4.34
2363 2369 0.612732 ACGGGGTTGATGGAGTCGTA 60.613 55.000 0.00 0.00 0.00 3.43
2364 2370 0.179119 CGGGGTTGATGGAGTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
2365 2371 1.192428 GGGGTTGATGGAGTCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
2366 2372 1.136500 GGGGTTGATGGAGTCGTACTC 59.864 57.143 6.50 6.50 44.32 2.59
2367 2373 1.202268 GGGTTGATGGAGTCGTACTCG 60.202 57.143 8.33 0.00 45.96 4.18
2368 2374 1.471684 GGTTGATGGAGTCGTACTCGT 59.528 52.381 8.33 1.85 45.96 4.18
2369 2375 2.477525 GGTTGATGGAGTCGTACTCGTC 60.478 54.545 8.33 9.13 45.96 4.20
2370 2376 1.004595 TGATGGAGTCGTACTCGTCG 58.995 55.000 8.33 0.00 45.96 5.12
2371 2377 1.005340 GATGGAGTCGTACTCGTCGT 58.995 55.000 8.33 0.00 45.96 4.34
2372 2378 0.725686 ATGGAGTCGTACTCGTCGTG 59.274 55.000 8.33 0.00 45.96 4.35
2373 2379 0.319813 TGGAGTCGTACTCGTCGTGA 60.320 55.000 0.56 0.00 45.96 4.35
2374 2380 1.005340 GGAGTCGTACTCGTCGTGAT 58.995 55.000 0.56 0.00 45.96 3.06
2375 2381 1.396301 GGAGTCGTACTCGTCGTGATT 59.604 52.381 0.56 0.00 45.96 2.57
2376 2382 2.536529 GGAGTCGTACTCGTCGTGATTC 60.537 54.545 0.56 0.00 45.96 2.52
2377 2383 2.071540 AGTCGTACTCGTCGTGATTCA 58.928 47.619 0.56 0.00 38.33 2.57
2378 2384 2.481568 AGTCGTACTCGTCGTGATTCAA 59.518 45.455 0.56 0.00 38.33 2.69
2379 2385 3.058708 AGTCGTACTCGTCGTGATTCAAA 60.059 43.478 0.56 0.00 38.33 2.69
2380 2386 3.850273 GTCGTACTCGTCGTGATTCAAAT 59.150 43.478 0.56 0.00 38.33 2.32
2381 2387 4.028670 GTCGTACTCGTCGTGATTCAAATC 60.029 45.833 0.56 0.00 38.33 2.17
2382 2388 3.849708 CGTACTCGTCGTGATTCAAATCA 59.150 43.478 0.56 1.30 42.78 2.57
2383 2389 6.395729 TCGTACTCGTCGTGATTCAAATCAC 61.396 44.000 20.83 20.83 46.62 3.06
2394 2400 6.367686 TGATTCAAATCACCGATGATCAAG 57.632 37.500 0.00 0.00 45.26 3.02
2395 2401 5.882000 TGATTCAAATCACCGATGATCAAGT 59.118 36.000 0.00 0.00 45.26 3.16
2396 2402 5.550232 TTCAAATCACCGATGATCAAGTG 57.450 39.130 14.53 14.53 45.26 3.16
2397 2403 3.374988 TCAAATCACCGATGATCAAGTGC 59.625 43.478 15.45 0.10 45.26 4.40
2398 2404 1.959042 ATCACCGATGATCAAGTGCC 58.041 50.000 15.45 0.00 42.15 5.01
2399 2405 0.460109 TCACCGATGATCAAGTGCCG 60.460 55.000 15.45 7.93 0.00 5.69
2400 2406 0.460109 CACCGATGATCAAGTGCCGA 60.460 55.000 0.00 0.00 0.00 5.54
2401 2407 0.249120 ACCGATGATCAAGTGCCGAA 59.751 50.000 0.00 0.00 0.00 4.30
2402 2408 0.652592 CCGATGATCAAGTGCCGAAC 59.347 55.000 0.00 0.00 0.00 3.95
2403 2409 0.298707 CGATGATCAAGTGCCGAACG 59.701 55.000 0.00 0.00 0.00 3.95
2404 2410 0.026803 GATGATCAAGTGCCGAACGC 59.973 55.000 0.00 0.00 38.31 4.84
2424 2430 3.723348 GGCACCTCCGCGTTCAAC 61.723 66.667 4.92 0.00 0.00 3.18
2425 2431 2.970324 GCACCTCCGCGTTCAACA 60.970 61.111 4.92 0.00 0.00 3.33
2426 2432 2.935955 CACCTCCGCGTTCAACAC 59.064 61.111 4.92 0.00 0.00 3.32
2427 2433 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
2428 2434 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
2429 2435 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
2430 2436 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
2431 2437 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
2432 2438 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
2433 2439 1.481019 CCGCGTTCAACACACGTACA 61.481 55.000 4.92 0.00 39.92 2.90
2434 2440 0.111878 CGCGTTCAACACACGTACAG 60.112 55.000 0.00 0.00 39.92 2.74
2435 2441 0.382636 GCGTTCAACACACGTACAGC 60.383 55.000 0.00 0.00 39.92 4.40
2436 2442 0.231279 CGTTCAACACACGTACAGCC 59.769 55.000 0.00 0.00 32.80 4.85
2437 2443 0.584876 GTTCAACACACGTACAGCCC 59.415 55.000 0.00 0.00 0.00 5.19
2438 2444 0.876777 TTCAACACACGTACAGCCCG 60.877 55.000 0.00 0.00 0.00 6.13
2439 2445 2.029964 AACACACGTACAGCCCGG 59.970 61.111 0.00 0.00 0.00 5.73
2440 2446 2.799452 AACACACGTACAGCCCGGT 61.799 57.895 0.00 0.00 0.00 5.28
2441 2447 2.736995 CACACGTACAGCCCGGTG 60.737 66.667 0.00 0.00 0.00 4.94
2442 2448 2.913578 ACACGTACAGCCCGGTGA 60.914 61.111 0.00 0.00 0.00 4.02
2443 2449 2.431942 CACGTACAGCCCGGTGAC 60.432 66.667 0.00 0.00 0.00 3.67
2460 2466 2.579201 CGTCTCCCACGCCTTGAT 59.421 61.111 0.00 0.00 42.87 2.57
2461 2467 1.519455 CGTCTCCCACGCCTTGATC 60.519 63.158 0.00 0.00 42.87 2.92
2462 2468 1.153349 GTCTCCCACGCCTTGATCC 60.153 63.158 0.00 0.00 0.00 3.36
2463 2469 1.612146 TCTCCCACGCCTTGATCCA 60.612 57.895 0.00 0.00 0.00 3.41
2464 2470 1.153289 CTCCCACGCCTTGATCCAG 60.153 63.158 0.00 0.00 0.00 3.86
2465 2471 2.825836 CCCACGCCTTGATCCAGC 60.826 66.667 0.00 0.00 0.00 4.85
2466 2472 2.046023 CCACGCCTTGATCCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
2467 2473 1.675310 CCACGCCTTGATCCAGCAA 60.675 57.895 0.00 0.00 0.00 3.91
2468 2474 1.651240 CCACGCCTTGATCCAGCAAG 61.651 60.000 0.00 0.00 43.74 4.01
2477 2483 4.468829 TCCAGCAAGGAGAGAGGG 57.531 61.111 0.00 0.00 43.07 4.30
2478 2484 1.783708 TCCAGCAAGGAGAGAGGGA 59.216 57.895 0.00 0.00 43.07 4.20
2479 2485 0.325110 TCCAGCAAGGAGAGAGGGAG 60.325 60.000 0.00 0.00 43.07 4.30
2480 2486 0.325110 CCAGCAAGGAGAGAGGGAGA 60.325 60.000 0.00 0.00 41.22 3.71
2481 2487 1.113788 CAGCAAGGAGAGAGGGAGAG 58.886 60.000 0.00 0.00 0.00 3.20
2482 2488 0.032217 AGCAAGGAGAGAGGGAGAGG 60.032 60.000 0.00 0.00 0.00 3.69
2483 2489 0.325203 GCAAGGAGAGAGGGAGAGGT 60.325 60.000 0.00 0.00 0.00 3.85
2484 2490 1.899438 GCAAGGAGAGAGGGAGAGGTT 60.899 57.143 0.00 0.00 0.00 3.50
2485 2491 1.830477 CAAGGAGAGAGGGAGAGGTTG 59.170 57.143 0.00 0.00 0.00 3.77
2486 2492 1.388174 AGGAGAGAGGGAGAGGTTGA 58.612 55.000 0.00 0.00 0.00 3.18
2487 2493 1.287739 AGGAGAGAGGGAGAGGTTGAG 59.712 57.143 0.00 0.00 0.00 3.02
2488 2494 1.687996 GGAGAGAGGGAGAGGTTGAGG 60.688 61.905 0.00 0.00 0.00 3.86
2489 2495 1.286553 GAGAGAGGGAGAGGTTGAGGA 59.713 57.143 0.00 0.00 0.00 3.71
2490 2496 1.719378 AGAGAGGGAGAGGTTGAGGAA 59.281 52.381 0.00 0.00 0.00 3.36
2491 2497 2.107366 GAGAGGGAGAGGTTGAGGAAG 58.893 57.143 0.00 0.00 0.00 3.46
2492 2498 1.719378 AGAGGGAGAGGTTGAGGAAGA 59.281 52.381 0.00 0.00 0.00 2.87
2493 2499 1.828595 GAGGGAGAGGTTGAGGAAGAC 59.171 57.143 0.00 0.00 0.00 3.01
2494 2500 1.435168 AGGGAGAGGTTGAGGAAGACT 59.565 52.381 0.00 0.00 0.00 3.24
2495 2501 1.828595 GGGAGAGGTTGAGGAAGACTC 59.171 57.143 0.00 0.00 46.78 3.36
2496 2502 1.828595 GGAGAGGTTGAGGAAGACTCC 59.171 57.143 0.00 0.00 46.01 3.85
2497 2503 2.530701 GAGAGGTTGAGGAAGACTCCA 58.469 52.381 0.00 0.00 46.01 3.86
2498 2504 3.103742 GAGAGGTTGAGGAAGACTCCAT 58.896 50.000 0.00 0.00 46.01 3.41
2499 2505 3.103742 AGAGGTTGAGGAAGACTCCATC 58.896 50.000 0.00 0.00 46.01 3.51
2500 2506 2.169561 GAGGTTGAGGAAGACTCCATCC 59.830 54.545 0.00 0.00 46.01 3.51
2501 2507 1.909302 GGTTGAGGAAGACTCCATCCA 59.091 52.381 0.00 0.00 46.01 3.41
2502 2508 2.305927 GGTTGAGGAAGACTCCATCCAA 59.694 50.000 0.00 0.00 46.01 3.53
2503 2509 3.339141 GTTGAGGAAGACTCCATCCAAC 58.661 50.000 0.00 0.00 46.01 3.77
2504 2510 2.619931 TGAGGAAGACTCCATCCAACA 58.380 47.619 0.00 0.00 46.01 3.33
2505 2511 2.568956 TGAGGAAGACTCCATCCAACAG 59.431 50.000 0.00 0.00 46.01 3.16
2506 2512 1.280421 AGGAAGACTCCATCCAACAGC 59.720 52.381 0.00 0.00 45.24 4.40
2507 2513 1.003580 GGAAGACTCCATCCAACAGCA 59.996 52.381 0.00 0.00 41.96 4.41
2508 2514 2.354259 GAAGACTCCATCCAACAGCAG 58.646 52.381 0.00 0.00 0.00 4.24
2509 2515 0.035630 AGACTCCATCCAACAGCAGC 60.036 55.000 0.00 0.00 0.00 5.25
2510 2516 0.321919 GACTCCATCCAACAGCAGCA 60.322 55.000 0.00 0.00 0.00 4.41
2511 2517 0.607489 ACTCCATCCAACAGCAGCAC 60.607 55.000 0.00 0.00 0.00 4.40
2512 2518 0.607217 CTCCATCCAACAGCAGCACA 60.607 55.000 0.00 0.00 0.00 4.57
2513 2519 0.178995 TCCATCCAACAGCAGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
2514 2520 0.038892 CCATCCAACAGCAGCACAAC 60.039 55.000 0.00 0.00 0.00 3.32
2515 2521 0.386352 CATCCAACAGCAGCACAACG 60.386 55.000 0.00 0.00 0.00 4.10
2516 2522 1.518056 ATCCAACAGCAGCACAACGG 61.518 55.000 0.00 0.00 0.00 4.44
2517 2523 2.353839 CAACAGCAGCACAACGGC 60.354 61.111 0.00 0.00 40.15 5.68
2518 2524 3.952675 AACAGCAGCACAACGGCG 61.953 61.111 4.80 4.80 45.09 6.46
2520 2526 4.671549 CAGCAGCACAACGGCGTG 62.672 66.667 15.70 10.75 45.09 5.34
2526 2532 3.947841 CACAACGGCGTGGTGGTG 61.948 66.667 34.23 24.43 34.13 4.17
2527 2533 4.164087 ACAACGGCGTGGTGGTGA 62.164 61.111 21.06 0.00 0.00 4.02
2528 2534 2.668212 CAACGGCGTGGTGGTGAT 60.668 61.111 15.70 0.00 0.00 3.06
2529 2535 2.668212 AACGGCGTGGTGGTGATG 60.668 61.111 15.70 0.00 0.00 3.07
2530 2536 4.697756 ACGGCGTGGTGGTGATGG 62.698 66.667 13.76 0.00 0.00 3.51
2531 2537 4.386951 CGGCGTGGTGGTGATGGA 62.387 66.667 0.00 0.00 0.00 3.41
2532 2538 2.436646 GGCGTGGTGGTGATGGAG 60.437 66.667 0.00 0.00 0.00 3.86
2533 2539 2.662596 GCGTGGTGGTGATGGAGA 59.337 61.111 0.00 0.00 0.00 3.71
2534 2540 1.003839 GCGTGGTGGTGATGGAGAA 60.004 57.895 0.00 0.00 0.00 2.87
2535 2541 1.021390 GCGTGGTGGTGATGGAGAAG 61.021 60.000 0.00 0.00 0.00 2.85
2536 2542 1.021390 CGTGGTGGTGATGGAGAAGC 61.021 60.000 0.00 0.00 0.00 3.86
2537 2543 1.021390 GTGGTGGTGATGGAGAAGCG 61.021 60.000 0.00 0.00 0.00 4.68
2538 2544 1.296715 GGTGGTGATGGAGAAGCGT 59.703 57.895 0.00 0.00 0.00 5.07
2539 2545 1.021390 GGTGGTGATGGAGAAGCGTG 61.021 60.000 0.00 0.00 0.00 5.34
2540 2546 1.021390 GTGGTGATGGAGAAGCGTGG 61.021 60.000 0.00 0.00 0.00 4.94
2541 2547 2.109126 GGTGATGGAGAAGCGTGGC 61.109 63.158 0.00 0.00 0.00 5.01
2542 2548 1.375908 GTGATGGAGAAGCGTGGCA 60.376 57.895 0.00 0.00 0.00 4.92
2543 2549 0.955428 GTGATGGAGAAGCGTGGCAA 60.955 55.000 0.00 0.00 0.00 4.52
2544 2550 0.035152 TGATGGAGAAGCGTGGCAAT 60.035 50.000 0.00 0.00 0.00 3.56
2545 2551 0.659957 GATGGAGAAGCGTGGCAATC 59.340 55.000 0.00 0.00 0.00 2.67
2546 2552 0.749454 ATGGAGAAGCGTGGCAATCC 60.749 55.000 0.00 0.00 0.00 3.01
2547 2553 1.377202 GGAGAAGCGTGGCAATCCA 60.377 57.895 0.00 0.00 40.85 3.41
2548 2554 1.372087 GGAGAAGCGTGGCAATCCAG 61.372 60.000 0.00 0.00 44.48 3.86
2549 2555 1.986575 GAGAAGCGTGGCAATCCAGC 61.987 60.000 0.00 0.00 44.48 4.85
2550 2556 2.282391 AAGCGTGGCAATCCAGCA 60.282 55.556 0.00 0.00 44.48 4.41
2551 2557 2.262471 GAAGCGTGGCAATCCAGCAG 62.262 60.000 0.00 0.00 44.48 4.24
2552 2558 3.818787 GCGTGGCAATCCAGCAGG 61.819 66.667 0.00 0.00 44.48 4.85
2553 2559 3.136123 CGTGGCAATCCAGCAGGG 61.136 66.667 0.00 0.00 44.48 4.45
2554 2560 3.455469 GTGGCAATCCAGCAGGGC 61.455 66.667 0.00 0.00 44.48 5.19
2555 2561 3.664888 TGGCAATCCAGCAGGGCT 61.665 61.111 0.00 0.00 40.77 5.19
2556 2562 2.363406 GGCAATCCAGCAGGGCTT 60.363 61.111 0.00 0.00 36.40 4.35
2557 2563 2.421399 GGCAATCCAGCAGGGCTTC 61.421 63.158 0.00 0.00 36.40 3.86
2558 2564 2.768492 GCAATCCAGCAGGGCTTCG 61.768 63.158 0.00 0.00 36.40 3.79
2559 2565 2.439156 AATCCAGCAGGGCTTCGC 60.439 61.111 0.00 0.00 36.40 4.70
2571 2577 3.726517 CTTCGCCAAGCACCACGG 61.727 66.667 0.00 0.00 0.00 4.94
2575 2581 4.329545 GCCAAGCACCACGGGAGA 62.330 66.667 0.00 0.00 0.00 3.71
2576 2582 2.046892 CCAAGCACCACGGGAGAG 60.047 66.667 0.00 0.00 0.00 3.20
2577 2583 2.046892 CAAGCACCACGGGAGAGG 60.047 66.667 0.00 0.00 46.82 3.69
2578 2584 2.203788 AAGCACCACGGGAGAGGA 60.204 61.111 0.00 0.00 43.94 3.71
2579 2585 2.286523 AAGCACCACGGGAGAGGAG 61.287 63.158 0.00 0.00 43.94 3.69
2580 2586 3.775654 GCACCACGGGAGAGGAGG 61.776 72.222 0.00 0.00 43.94 4.30
2581 2587 2.037367 CACCACGGGAGAGGAGGA 59.963 66.667 0.00 0.00 43.94 3.71
2582 2588 2.037527 ACCACGGGAGAGGAGGAC 59.962 66.667 0.00 0.00 43.94 3.85
2583 2589 3.141488 CCACGGGAGAGGAGGACG 61.141 72.222 0.00 0.00 43.94 4.79
2584 2590 2.045242 CACGGGAGAGGAGGACGA 60.045 66.667 0.00 0.00 0.00 4.20
2585 2591 2.045143 ACGGGAGAGGAGGACGAC 60.045 66.667 0.00 0.00 0.00 4.34
2586 2592 2.272797 CGGGAGAGGAGGACGACT 59.727 66.667 0.00 0.00 0.00 4.18
2587 2593 1.378778 CGGGAGAGGAGGACGACTT 60.379 63.158 0.00 0.00 0.00 3.01
2588 2594 1.658686 CGGGAGAGGAGGACGACTTG 61.659 65.000 0.00 0.00 0.00 3.16
2589 2595 1.324005 GGGAGAGGAGGACGACTTGG 61.324 65.000 0.00 0.00 0.00 3.61
2590 2596 1.324005 GGAGAGGAGGACGACTTGGG 61.324 65.000 0.00 0.00 0.00 4.12
2591 2597 0.323542 GAGAGGAGGACGACTTGGGA 60.324 60.000 0.00 0.00 0.00 4.37
2592 2598 0.323908 AGAGGAGGACGACTTGGGAG 60.324 60.000 0.00 0.00 0.00 4.30
2593 2599 0.323542 GAGGAGGACGACTTGGGAGA 60.324 60.000 0.00 0.00 0.00 3.71
2594 2600 0.323908 AGGAGGACGACTTGGGAGAG 60.324 60.000 0.00 0.00 0.00 3.20
2595 2601 1.324005 GGAGGACGACTTGGGAGAGG 61.324 65.000 0.00 0.00 0.00 3.69
2596 2602 1.305381 AGGACGACTTGGGAGAGGG 60.305 63.158 0.00 0.00 0.00 4.30
2597 2603 2.359967 GGACGACTTGGGAGAGGGG 61.360 68.421 0.00 0.00 0.00 4.79
2598 2604 2.284699 ACGACTTGGGAGAGGGGG 60.285 66.667 0.00 0.00 0.00 5.40
2599 2605 2.038975 CGACTTGGGAGAGGGGGA 59.961 66.667 0.00 0.00 0.00 4.81
2600 2606 2.060980 CGACTTGGGAGAGGGGGAG 61.061 68.421 0.00 0.00 0.00 4.30
2601 2607 1.690985 GACTTGGGAGAGGGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
2602 2608 2.367512 CTTGGGAGAGGGGGAGGG 60.368 72.222 0.00 0.00 0.00 4.30
2603 2609 4.760220 TTGGGAGAGGGGGAGGGC 62.760 72.222 0.00 0.00 0.00 5.19
2619 2625 3.044305 GCTGCGCCAGAACTTCGT 61.044 61.111 4.18 0.00 32.44 3.85
2620 2626 3.016474 GCTGCGCCAGAACTTCGTC 62.016 63.158 4.18 0.00 32.44 4.20
2621 2627 1.373497 CTGCGCCAGAACTTCGTCT 60.373 57.895 4.18 0.00 32.44 4.18
2622 2628 1.621301 CTGCGCCAGAACTTCGTCTG 61.621 60.000 4.18 0.00 43.98 3.51
2623 2629 1.372997 GCGCCAGAACTTCGTCTGA 60.373 57.895 0.00 0.00 46.76 3.27
2624 2630 0.944311 GCGCCAGAACTTCGTCTGAA 60.944 55.000 0.00 0.00 46.76 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 184 2.350522 GCACGAGTGGTTGATCTTCAT 58.649 47.619 5.32 0.00 0.00 2.57
184 185 1.608025 GGCACGAGTGGTTGATCTTCA 60.608 52.381 5.32 0.00 0.00 3.02
471 472 8.746751 CAACCGTCATCATATCGTATTATCATC 58.253 37.037 0.00 0.00 0.00 2.92
1556 1561 2.595655 GGGCGGGGAAAGCTACAT 59.404 61.111 0.00 0.00 34.52 2.29
1668 1674 4.652421 TTGTAGTAGTCGTGACCAACAA 57.348 40.909 0.00 0.61 0.00 2.83
2103 2109 2.034532 TCCACGAGGAGCGGTACA 59.965 61.111 0.00 0.00 46.49 2.90
2212 2218 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
2213 2219 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
2214 2220 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
2215 2221 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
2216 2222 7.637709 AAATTTTGAATTTCTGCTACGTTCC 57.362 32.000 0.00 0.00 0.00 3.62
2217 2223 8.214472 GGAAAATTTTGAATTTCTGCTACGTTC 58.786 33.333 8.47 0.00 36.15 3.95
2218 2224 7.926018 AGGAAAATTTTGAATTTCTGCTACGTT 59.074 29.630 8.47 0.00 36.15 3.99
2219 2225 7.433680 AGGAAAATTTTGAATTTCTGCTACGT 58.566 30.769 8.47 0.00 36.15 3.57
2220 2226 7.873739 AGGAAAATTTTGAATTTCTGCTACG 57.126 32.000 8.47 0.00 36.15 3.51
2221 2227 8.850452 CGTAGGAAAATTTTGAATTTCTGCTAC 58.150 33.333 8.47 6.07 36.15 3.58
2222 2228 8.573035 ACGTAGGAAAATTTTGAATTTCTGCTA 58.427 29.630 8.47 0.00 36.15 3.49
2223 2229 7.382218 CACGTAGGAAAATTTTGAATTTCTGCT 59.618 33.333 8.47 0.00 36.15 4.24
2224 2230 7.169140 ACACGTAGGAAAATTTTGAATTTCTGC 59.831 33.333 8.47 0.00 36.15 4.26
2225 2231 8.574196 ACACGTAGGAAAATTTTGAATTTCTG 57.426 30.769 8.47 0.00 36.15 3.02
2226 2232 8.410141 TGACACGTAGGAAAATTTTGAATTTCT 58.590 29.630 8.47 0.00 36.15 2.52
2227 2233 8.476925 GTGACACGTAGGAAAATTTTGAATTTC 58.523 33.333 8.47 0.00 35.33 2.17
2228 2234 7.436970 GGTGACACGTAGGAAAATTTTGAATTT 59.563 33.333 8.47 0.00 0.00 1.82
2229 2235 6.921307 GGTGACACGTAGGAAAATTTTGAATT 59.079 34.615 8.47 0.00 0.00 2.17
2230 2236 6.039941 TGGTGACACGTAGGAAAATTTTGAAT 59.960 34.615 8.47 0.00 33.40 2.57
2231 2237 5.357314 TGGTGACACGTAGGAAAATTTTGAA 59.643 36.000 8.47 0.00 33.40 2.69
2232 2238 4.882427 TGGTGACACGTAGGAAAATTTTGA 59.118 37.500 8.47 0.00 33.40 2.69
2233 2239 5.176407 TGGTGACACGTAGGAAAATTTTG 57.824 39.130 8.47 0.00 33.40 2.44
2234 2240 5.591067 TCTTGGTGACACGTAGGAAAATTTT 59.409 36.000 2.28 2.28 42.67 1.82
2235 2241 5.127491 TCTTGGTGACACGTAGGAAAATTT 58.873 37.500 0.00 0.00 42.67 1.82
2236 2242 4.710324 TCTTGGTGACACGTAGGAAAATT 58.290 39.130 0.00 0.00 42.67 1.82
2237 2243 4.345859 TCTTGGTGACACGTAGGAAAAT 57.654 40.909 0.00 0.00 42.67 1.82
2238 2244 3.823281 TCTTGGTGACACGTAGGAAAA 57.177 42.857 0.00 0.00 42.67 2.29
2239 2245 3.576982 AGATCTTGGTGACACGTAGGAAA 59.423 43.478 0.00 0.00 42.67 3.13
2240 2246 3.162666 AGATCTTGGTGACACGTAGGAA 58.837 45.455 0.00 0.00 42.67 3.36
2241 2247 2.803956 AGATCTTGGTGACACGTAGGA 58.196 47.619 0.00 0.00 42.67 2.94
2242 2248 4.580995 AGATAGATCTTGGTGACACGTAGG 59.419 45.833 0.00 0.00 42.67 3.18
2243 2249 5.759506 AGATAGATCTTGGTGACACGTAG 57.240 43.478 0.00 0.00 42.67 3.51
2244 2250 6.206829 CCATAGATAGATCTTGGTGACACGTA 59.793 42.308 0.00 0.00 42.67 3.57
2245 2251 5.010112 CCATAGATAGATCTTGGTGACACGT 59.990 44.000 0.00 0.00 42.67 4.49
2246 2252 5.241728 TCCATAGATAGATCTTGGTGACACG 59.758 44.000 0.00 0.00 42.67 4.49
2247 2253 6.491745 TCTCCATAGATAGATCTTGGTGACAC 59.508 42.308 0.00 0.00 42.67 3.67
2248 2254 6.614657 TCTCCATAGATAGATCTTGGTGACA 58.385 40.000 0.00 0.00 38.32 3.58
2249 2255 7.531857 TTCTCCATAGATAGATCTTGGTGAC 57.468 40.000 12.54 0.00 37.34 3.67
2250 2256 7.015682 GGTTTCTCCATAGATAGATCTTGGTGA 59.984 40.741 0.00 5.80 36.71 4.02
2251 2257 7.158021 GGTTTCTCCATAGATAGATCTTGGTG 58.842 42.308 0.00 3.27 36.89 4.17
2252 2258 6.846505 TGGTTTCTCCATAGATAGATCTTGGT 59.153 38.462 0.00 0.00 41.93 3.67
2253 2259 7.308450 TGGTTTCTCCATAGATAGATCTTGG 57.692 40.000 0.00 1.69 41.93 3.61
2254 2260 6.873076 GCTGGTTTCTCCATAGATAGATCTTG 59.127 42.308 0.00 0.00 46.12 3.02
2255 2261 6.556495 TGCTGGTTTCTCCATAGATAGATCTT 59.444 38.462 0.00 0.00 46.12 2.40
2256 2262 6.080682 TGCTGGTTTCTCCATAGATAGATCT 58.919 40.000 0.00 0.00 46.12 2.75
2257 2263 6.352016 TGCTGGTTTCTCCATAGATAGATC 57.648 41.667 0.00 0.00 46.12 2.75
2258 2264 6.529220 GTTGCTGGTTTCTCCATAGATAGAT 58.471 40.000 0.00 0.00 46.12 1.98
2259 2265 5.451937 CGTTGCTGGTTTCTCCATAGATAGA 60.452 44.000 0.00 0.00 46.12 1.98
2260 2266 4.747108 CGTTGCTGGTTTCTCCATAGATAG 59.253 45.833 0.00 0.00 46.12 2.08
2261 2267 4.404394 TCGTTGCTGGTTTCTCCATAGATA 59.596 41.667 0.00 0.00 46.12 1.98
2262 2268 3.197766 TCGTTGCTGGTTTCTCCATAGAT 59.802 43.478 0.00 0.00 46.12 1.98
2263 2269 2.565391 TCGTTGCTGGTTTCTCCATAGA 59.435 45.455 0.00 0.00 46.12 1.98
2264 2270 2.932614 CTCGTTGCTGGTTTCTCCATAG 59.067 50.000 0.00 0.00 46.12 2.23
2265 2271 2.354704 CCTCGTTGCTGGTTTCTCCATA 60.355 50.000 0.00 0.00 46.12 2.74
2266 2272 1.611673 CCTCGTTGCTGGTTTCTCCAT 60.612 52.381 0.00 0.00 46.12 3.41
2267 2273 0.250295 CCTCGTTGCTGGTTTCTCCA 60.250 55.000 0.00 0.00 45.01 3.86
2268 2274 0.955919 CCCTCGTTGCTGGTTTCTCC 60.956 60.000 0.00 0.00 0.00 3.71
2269 2275 0.955919 CCCCTCGTTGCTGGTTTCTC 60.956 60.000 0.00 0.00 0.00 2.87
2270 2276 1.073199 CCCCTCGTTGCTGGTTTCT 59.927 57.895 0.00 0.00 0.00 2.52
2271 2277 0.536460 TTCCCCTCGTTGCTGGTTTC 60.536 55.000 0.00 0.00 0.00 2.78
2272 2278 0.537371 CTTCCCCTCGTTGCTGGTTT 60.537 55.000 0.00 0.00 0.00 3.27
2273 2279 1.073199 CTTCCCCTCGTTGCTGGTT 59.927 57.895 0.00 0.00 0.00 3.67
2274 2280 2.750350 CTTCCCCTCGTTGCTGGT 59.250 61.111 0.00 0.00 0.00 4.00
2275 2281 2.045926 CCTTCCCCTCGTTGCTGG 60.046 66.667 0.00 0.00 0.00 4.85
2276 2282 1.078848 CTCCTTCCCCTCGTTGCTG 60.079 63.158 0.00 0.00 0.00 4.41
2277 2283 1.229209 TCTCCTTCCCCTCGTTGCT 60.229 57.895 0.00 0.00 0.00 3.91
2278 2284 1.219393 CTCTCCTTCCCCTCGTTGC 59.781 63.158 0.00 0.00 0.00 4.17
2279 2285 0.247736 CACTCTCCTTCCCCTCGTTG 59.752 60.000 0.00 0.00 0.00 4.10
2280 2286 1.545706 GCACTCTCCTTCCCCTCGTT 61.546 60.000 0.00 0.00 0.00 3.85
2281 2287 1.985116 GCACTCTCCTTCCCCTCGT 60.985 63.158 0.00 0.00 0.00 4.18
2282 2288 1.333636 ATGCACTCTCCTTCCCCTCG 61.334 60.000 0.00 0.00 0.00 4.63
2283 2289 0.467804 GATGCACTCTCCTTCCCCTC 59.532 60.000 0.00 0.00 0.00 4.30
2284 2290 0.043940 AGATGCACTCTCCTTCCCCT 59.956 55.000 0.00 0.00 0.00 4.79
2285 2291 1.414550 GTAGATGCACTCTCCTTCCCC 59.585 57.143 0.00 0.00 35.28 4.81
2286 2292 2.111384 TGTAGATGCACTCTCCTTCCC 58.889 52.381 0.00 0.00 35.28 3.97
2287 2293 4.262249 GGTATGTAGATGCACTCTCCTTCC 60.262 50.000 0.00 0.00 35.28 3.46
2288 2294 4.262249 GGGTATGTAGATGCACTCTCCTTC 60.262 50.000 0.00 0.00 35.28 3.46
2289 2295 3.643792 GGGTATGTAGATGCACTCTCCTT 59.356 47.826 0.00 0.00 35.28 3.36
2290 2296 3.116939 AGGGTATGTAGATGCACTCTCCT 60.117 47.826 0.00 0.00 35.28 3.69
2291 2297 3.235200 AGGGTATGTAGATGCACTCTCC 58.765 50.000 0.00 0.00 35.28 3.71
2292 2298 4.100189 ACAAGGGTATGTAGATGCACTCTC 59.900 45.833 0.00 0.00 35.28 3.20
2293 2299 4.033709 ACAAGGGTATGTAGATGCACTCT 58.966 43.478 0.00 0.00 38.06 3.24
2294 2300 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
2303 2309 5.048224 GCTTAGCGATCTACAAGGGTATGTA 60.048 44.000 0.00 0.00 34.75 2.29
2304 2310 4.262079 GCTTAGCGATCTACAAGGGTATGT 60.262 45.833 0.00 0.00 37.32 2.29
2305 2311 4.238514 GCTTAGCGATCTACAAGGGTATG 58.761 47.826 0.00 0.00 0.00 2.39
2306 2312 4.522722 GCTTAGCGATCTACAAGGGTAT 57.477 45.455 0.00 0.00 0.00 2.73
2308 2314 2.892784 GCTTAGCGATCTACAAGGGT 57.107 50.000 0.00 0.00 0.00 4.34
2321 2327 0.095417 CTTGAACGCTTCCGCTTAGC 59.905 55.000 0.00 0.00 38.22 3.09
2322 2328 1.126846 CACTTGAACGCTTCCGCTTAG 59.873 52.381 0.00 0.00 38.22 2.18
2323 2329 1.144969 CACTTGAACGCTTCCGCTTA 58.855 50.000 0.00 0.00 38.22 3.09
2324 2330 0.531974 TCACTTGAACGCTTCCGCTT 60.532 50.000 0.00 0.00 38.22 4.68
2325 2331 0.531974 TTCACTTGAACGCTTCCGCT 60.532 50.000 0.00 0.00 38.22 5.52
2326 2332 0.384353 GTTCACTTGAACGCTTCCGC 60.384 55.000 6.36 0.00 43.97 5.54
2327 2333 3.729004 GTTCACTTGAACGCTTCCG 57.271 52.632 6.36 0.00 43.97 4.30
2335 2341 2.226330 CATCAACCCCGTTCACTTGAA 58.774 47.619 0.00 0.00 0.00 2.69
2336 2342 1.544537 CCATCAACCCCGTTCACTTGA 60.545 52.381 0.00 0.00 0.00 3.02
2337 2343 0.881118 CCATCAACCCCGTTCACTTG 59.119 55.000 0.00 0.00 0.00 3.16
2338 2344 0.768622 TCCATCAACCCCGTTCACTT 59.231 50.000 0.00 0.00 0.00 3.16
2339 2345 0.324943 CTCCATCAACCCCGTTCACT 59.675 55.000 0.00 0.00 0.00 3.41
2340 2346 0.036306 ACTCCATCAACCCCGTTCAC 59.964 55.000 0.00 0.00 0.00 3.18
2341 2347 0.323629 GACTCCATCAACCCCGTTCA 59.676 55.000 0.00 0.00 0.00 3.18
2342 2348 0.739813 CGACTCCATCAACCCCGTTC 60.740 60.000 0.00 0.00 0.00 3.95
2343 2349 1.295423 CGACTCCATCAACCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
2344 2350 0.612732 TACGACTCCATCAACCCCGT 60.613 55.000 0.00 0.00 0.00 5.28
2345 2351 0.179119 GTACGACTCCATCAACCCCG 60.179 60.000 0.00 0.00 0.00 5.73
2346 2352 1.136500 GAGTACGACTCCATCAACCCC 59.864 57.143 0.00 0.00 39.28 4.95
2347 2353 1.202268 CGAGTACGACTCCATCAACCC 60.202 57.143 8.73 0.00 42.12 4.11
2348 2354 1.471684 ACGAGTACGACTCCATCAACC 59.528 52.381 8.73 0.00 42.12 3.77
2349 2355 2.783333 GACGAGTACGACTCCATCAAC 58.217 52.381 8.73 0.00 42.12 3.18
2350 2356 1.395954 CGACGAGTACGACTCCATCAA 59.604 52.381 8.73 0.00 42.12 2.57
2351 2357 1.004595 CGACGAGTACGACTCCATCA 58.995 55.000 8.73 0.00 42.12 3.07
2352 2358 1.005340 ACGACGAGTACGACTCCATC 58.995 55.000 0.00 6.63 42.12 3.51
2353 2359 0.725686 CACGACGAGTACGACTCCAT 59.274 55.000 0.00 0.00 42.12 3.41
2354 2360 0.319813 TCACGACGAGTACGACTCCA 60.320 55.000 0.00 0.00 42.12 3.86
2355 2361 1.005340 ATCACGACGAGTACGACTCC 58.995 55.000 0.00 0.00 42.12 3.85
2356 2362 2.093310 TGAATCACGACGAGTACGACTC 59.907 50.000 0.00 0.00 41.71 3.36
2357 2363 2.071540 TGAATCACGACGAGTACGACT 58.928 47.619 0.00 0.00 42.66 4.18
2358 2364 2.515641 TGAATCACGACGAGTACGAC 57.484 50.000 0.00 0.00 42.66 4.34
2359 2365 3.541071 TTTGAATCACGACGAGTACGA 57.459 42.857 0.00 0.00 42.66 3.43
2360 2366 3.849708 TGATTTGAATCACGACGAGTACG 59.150 43.478 0.00 0.00 40.32 3.67
2371 2377 5.882000 ACTTGATCATCGGTGATTTGAATCA 59.118 36.000 13.46 2.71 44.96 2.57
2372 2378 6.197276 CACTTGATCATCGGTGATTTGAATC 58.803 40.000 13.46 0.00 44.96 2.52
2373 2379 5.449588 GCACTTGATCATCGGTGATTTGAAT 60.450 40.000 13.46 0.00 44.96 2.57
2374 2380 4.142622 GCACTTGATCATCGGTGATTTGAA 60.143 41.667 13.46 5.68 44.96 2.69
2375 2381 3.374988 GCACTTGATCATCGGTGATTTGA 59.625 43.478 13.46 1.20 44.96 2.69
2376 2382 3.488047 GGCACTTGATCATCGGTGATTTG 60.488 47.826 13.46 9.04 44.96 2.32
2377 2383 2.684881 GGCACTTGATCATCGGTGATTT 59.315 45.455 13.46 0.00 44.96 2.17
2378 2384 2.292267 GGCACTTGATCATCGGTGATT 58.708 47.619 13.46 0.00 44.96 2.57
2380 2386 0.460109 CGGCACTTGATCATCGGTGA 60.460 55.000 20.63 0.00 39.04 4.02
2381 2387 0.460109 TCGGCACTTGATCATCGGTG 60.460 55.000 15.26 15.26 0.00 4.94
2382 2388 0.249120 TTCGGCACTTGATCATCGGT 59.751 50.000 0.00 0.00 0.00 4.69
2383 2389 0.652592 GTTCGGCACTTGATCATCGG 59.347 55.000 0.00 0.00 0.00 4.18
2384 2390 0.298707 CGTTCGGCACTTGATCATCG 59.701 55.000 0.00 0.00 0.00 3.84
2385 2391 0.026803 GCGTTCGGCACTTGATCATC 59.973 55.000 0.00 0.00 42.87 2.92
2386 2392 2.089854 GCGTTCGGCACTTGATCAT 58.910 52.632 0.00 0.00 42.87 2.45
2387 2393 3.561429 GCGTTCGGCACTTGATCA 58.439 55.556 0.00 0.00 42.87 2.92
2407 2413 3.723348 GTTGAACGCGGAGGTGCC 61.723 66.667 12.47 0.00 0.00 5.01
2408 2414 2.970324 TGTTGAACGCGGAGGTGC 60.970 61.111 12.47 0.00 0.00 5.01
2409 2415 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
2410 2416 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
2411 2417 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
2416 2422 0.382636 GCTGTACGTGTGTTGAACGC 60.383 55.000 1.20 1.20 44.80 4.84
2417 2423 0.231279 GGCTGTACGTGTGTTGAACG 59.769 55.000 0.00 0.00 46.32 3.95
2418 2424 0.584876 GGGCTGTACGTGTGTTGAAC 59.415 55.000 0.00 0.00 0.00 3.18
2419 2425 0.876777 CGGGCTGTACGTGTGTTGAA 60.877 55.000 0.00 0.00 0.00 2.69
2420 2426 1.300311 CGGGCTGTACGTGTGTTGA 60.300 57.895 0.00 0.00 0.00 3.18
2421 2427 2.314647 CCGGGCTGTACGTGTGTTG 61.315 63.158 0.00 0.00 0.00 3.33
2422 2428 2.029964 CCGGGCTGTACGTGTGTT 59.970 61.111 0.00 0.00 0.00 3.32
2423 2429 3.228759 ACCGGGCTGTACGTGTGT 61.229 61.111 6.32 0.00 0.00 3.72
2424 2430 2.736995 CACCGGGCTGTACGTGTG 60.737 66.667 6.32 0.00 0.00 3.82
2425 2431 2.913578 TCACCGGGCTGTACGTGT 60.914 61.111 6.32 0.00 0.00 4.49
2426 2432 2.431942 GTCACCGGGCTGTACGTG 60.432 66.667 6.32 0.00 0.00 4.49
2427 2433 4.047059 CGTCACCGGGCTGTACGT 62.047 66.667 6.32 0.00 0.00 3.57
2428 2434 3.958822 GACGTCACCGGGCTGTACG 62.959 68.421 11.55 10.46 38.78 3.67
2429 2435 2.126189 GACGTCACCGGGCTGTAC 60.126 66.667 11.55 0.00 38.78 2.90
2430 2436 2.282674 AGACGTCACCGGGCTGTA 60.283 61.111 19.50 0.00 38.78 2.74
2431 2437 3.681835 GAGACGTCACCGGGCTGT 61.682 66.667 19.50 0.00 38.78 4.40
2432 2438 4.436998 GGAGACGTCACCGGGCTG 62.437 72.222 19.50 0.00 38.78 4.85
2435 2441 4.065281 GTGGGAGACGTCACCGGG 62.065 72.222 23.22 0.00 38.78 5.73
2436 2442 4.415332 CGTGGGAGACGTCACCGG 62.415 72.222 23.22 12.66 43.50 5.28
2444 2450 1.153349 GGATCAAGGCGTGGGAGAC 60.153 63.158 0.00 0.00 0.00 3.36
2445 2451 1.612146 TGGATCAAGGCGTGGGAGA 60.612 57.895 0.00 0.00 0.00 3.71
2446 2452 1.153289 CTGGATCAAGGCGTGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
2447 2453 2.989639 CTGGATCAAGGCGTGGGA 59.010 61.111 0.00 0.00 0.00 4.37
2448 2454 2.825836 GCTGGATCAAGGCGTGGG 60.826 66.667 0.00 0.00 0.00 4.61
2449 2455 1.651240 CTTGCTGGATCAAGGCGTGG 61.651 60.000 0.00 0.00 39.68 4.94
2450 2456 1.798735 CTTGCTGGATCAAGGCGTG 59.201 57.895 0.00 0.00 39.68 5.34
2451 2457 4.308526 CTTGCTGGATCAAGGCGT 57.691 55.556 0.00 0.00 39.68 5.68
2455 2461 2.158928 CCTCTCTCCTTGCTGGATCAAG 60.159 54.545 0.00 0.00 45.16 3.02
2456 2462 1.836166 CCTCTCTCCTTGCTGGATCAA 59.164 52.381 0.00 0.00 45.16 2.57
2457 2463 1.493861 CCTCTCTCCTTGCTGGATCA 58.506 55.000 0.00 0.00 45.16 2.92
2458 2464 0.758123 CCCTCTCTCCTTGCTGGATC 59.242 60.000 0.00 0.00 45.16 3.36
2459 2465 0.341258 TCCCTCTCTCCTTGCTGGAT 59.659 55.000 0.00 0.00 45.16 3.41
2460 2466 0.325110 CTCCCTCTCTCCTTGCTGGA 60.325 60.000 0.00 0.00 43.86 3.86
2461 2467 0.325110 TCTCCCTCTCTCCTTGCTGG 60.325 60.000 0.00 0.00 37.10 4.85
2462 2468 1.113788 CTCTCCCTCTCTCCTTGCTG 58.886 60.000 0.00 0.00 0.00 4.41
2463 2469 0.032217 CCTCTCCCTCTCTCCTTGCT 60.032 60.000 0.00 0.00 0.00 3.91
2464 2470 0.325203 ACCTCTCCCTCTCTCCTTGC 60.325 60.000 0.00 0.00 0.00 4.01
2465 2471 1.830477 CAACCTCTCCCTCTCTCCTTG 59.170 57.143 0.00 0.00 0.00 3.61
2466 2472 1.719378 TCAACCTCTCCCTCTCTCCTT 59.281 52.381 0.00 0.00 0.00 3.36
2467 2473 1.287739 CTCAACCTCTCCCTCTCTCCT 59.712 57.143 0.00 0.00 0.00 3.69
2468 2474 1.687996 CCTCAACCTCTCCCTCTCTCC 60.688 61.905 0.00 0.00 0.00 3.71
2469 2475 1.286553 TCCTCAACCTCTCCCTCTCTC 59.713 57.143 0.00 0.00 0.00 3.20
2470 2476 1.388174 TCCTCAACCTCTCCCTCTCT 58.612 55.000 0.00 0.00 0.00 3.10
2471 2477 2.107366 CTTCCTCAACCTCTCCCTCTC 58.893 57.143 0.00 0.00 0.00 3.20
2472 2478 1.719378 TCTTCCTCAACCTCTCCCTCT 59.281 52.381 0.00 0.00 0.00 3.69
2473 2479 1.828595 GTCTTCCTCAACCTCTCCCTC 59.171 57.143 0.00 0.00 0.00 4.30
2474 2480 1.435168 AGTCTTCCTCAACCTCTCCCT 59.565 52.381 0.00 0.00 0.00 4.20
2475 2481 1.828595 GAGTCTTCCTCAACCTCTCCC 59.171 57.143 0.00 0.00 40.17 4.30
2476 2482 1.828595 GGAGTCTTCCTCAACCTCTCC 59.171 57.143 0.00 0.00 42.40 3.71
2477 2483 2.530701 TGGAGTCTTCCTCAACCTCTC 58.469 52.381 0.00 0.00 44.36 3.20
2478 2484 2.704190 TGGAGTCTTCCTCAACCTCT 57.296 50.000 0.00 0.00 44.36 3.69
2479 2485 2.169561 GGATGGAGTCTTCCTCAACCTC 59.830 54.545 5.66 0.00 44.36 3.85
2480 2486 2.192263 GGATGGAGTCTTCCTCAACCT 58.808 52.381 5.66 0.00 44.36 3.50
2481 2487 1.909302 TGGATGGAGTCTTCCTCAACC 59.091 52.381 12.12 1.27 44.36 3.77
2482 2488 3.244561 TGTTGGATGGAGTCTTCCTCAAC 60.245 47.826 12.12 14.69 44.36 3.18
2483 2489 2.978978 TGTTGGATGGAGTCTTCCTCAA 59.021 45.455 12.12 0.02 44.36 3.02
2484 2490 2.568956 CTGTTGGATGGAGTCTTCCTCA 59.431 50.000 12.12 10.35 44.36 3.86
2485 2491 2.679349 GCTGTTGGATGGAGTCTTCCTC 60.679 54.545 12.12 7.42 44.36 3.71
2486 2492 1.280421 GCTGTTGGATGGAGTCTTCCT 59.720 52.381 12.12 0.00 44.36 3.36
2487 2493 1.003580 TGCTGTTGGATGGAGTCTTCC 59.996 52.381 5.90 5.90 44.31 3.46
2488 2494 2.354259 CTGCTGTTGGATGGAGTCTTC 58.646 52.381 0.00 0.00 0.00 2.87
2489 2495 1.612726 GCTGCTGTTGGATGGAGTCTT 60.613 52.381 0.00 0.00 0.00 3.01
2490 2496 0.035630 GCTGCTGTTGGATGGAGTCT 60.036 55.000 0.00 0.00 0.00 3.24
2491 2497 0.321919 TGCTGCTGTTGGATGGAGTC 60.322 55.000 0.00 0.00 0.00 3.36
2492 2498 0.607489 GTGCTGCTGTTGGATGGAGT 60.607 55.000 0.00 0.00 0.00 3.85
2493 2499 0.607217 TGTGCTGCTGTTGGATGGAG 60.607 55.000 0.00 0.00 0.00 3.86
2494 2500 0.178995 TTGTGCTGCTGTTGGATGGA 60.179 50.000 0.00 0.00 0.00 3.41
2495 2501 0.038892 GTTGTGCTGCTGTTGGATGG 60.039 55.000 0.00 0.00 0.00 3.51
2496 2502 0.386352 CGTTGTGCTGCTGTTGGATG 60.386 55.000 0.00 0.00 0.00 3.51
2497 2503 1.518056 CCGTTGTGCTGCTGTTGGAT 61.518 55.000 0.00 0.00 0.00 3.41
2498 2504 2.186160 CCGTTGTGCTGCTGTTGGA 61.186 57.895 0.00 0.00 0.00 3.53
2499 2505 2.332514 CCGTTGTGCTGCTGTTGG 59.667 61.111 0.00 0.00 0.00 3.77
2500 2506 2.353839 GCCGTTGTGCTGCTGTTG 60.354 61.111 0.00 0.00 0.00 3.33
2501 2507 3.952675 CGCCGTTGTGCTGCTGTT 61.953 61.111 0.00 0.00 0.00 3.16
2503 2509 4.671549 CACGCCGTTGTGCTGCTG 62.672 66.667 0.00 0.00 32.31 4.41
2506 2512 4.312231 CACCACGCCGTTGTGCTG 62.312 66.667 8.58 0.00 38.55 4.41
2509 2515 3.947841 CACCACCACGCCGTTGTG 61.948 66.667 13.93 13.93 39.60 3.33
2510 2516 3.469863 ATCACCACCACGCCGTTGT 62.470 57.895 0.00 0.00 0.00 3.32
2511 2517 2.668212 ATCACCACCACGCCGTTG 60.668 61.111 0.00 0.00 0.00 4.10
2512 2518 2.668212 CATCACCACCACGCCGTT 60.668 61.111 0.00 0.00 0.00 4.44
2513 2519 4.697756 CCATCACCACCACGCCGT 62.698 66.667 0.00 0.00 0.00 5.68
2514 2520 4.386951 TCCATCACCACCACGCCG 62.387 66.667 0.00 0.00 0.00 6.46
2515 2521 2.436646 CTCCATCACCACCACGCC 60.437 66.667 0.00 0.00 0.00 5.68
2516 2522 1.003839 TTCTCCATCACCACCACGC 60.004 57.895 0.00 0.00 0.00 5.34
2517 2523 1.021390 GCTTCTCCATCACCACCACG 61.021 60.000 0.00 0.00 0.00 4.94
2518 2524 1.021390 CGCTTCTCCATCACCACCAC 61.021 60.000 0.00 0.00 0.00 4.16
2519 2525 1.296392 CGCTTCTCCATCACCACCA 59.704 57.895 0.00 0.00 0.00 4.17
2520 2526 1.021390 CACGCTTCTCCATCACCACC 61.021 60.000 0.00 0.00 0.00 4.61
2521 2527 1.021390 CCACGCTTCTCCATCACCAC 61.021 60.000 0.00 0.00 0.00 4.16
2522 2528 1.296392 CCACGCTTCTCCATCACCA 59.704 57.895 0.00 0.00 0.00 4.17
2523 2529 2.109126 GCCACGCTTCTCCATCACC 61.109 63.158 0.00 0.00 0.00 4.02
2524 2530 0.955428 TTGCCACGCTTCTCCATCAC 60.955 55.000 0.00 0.00 0.00 3.06
2525 2531 0.035152 ATTGCCACGCTTCTCCATCA 60.035 50.000 0.00 0.00 0.00 3.07
2526 2532 0.659957 GATTGCCACGCTTCTCCATC 59.340 55.000 0.00 0.00 0.00 3.51
2527 2533 0.749454 GGATTGCCACGCTTCTCCAT 60.749 55.000 0.00 0.00 0.00 3.41
2528 2534 1.377202 GGATTGCCACGCTTCTCCA 60.377 57.895 0.00 0.00 0.00 3.86
2529 2535 1.372087 CTGGATTGCCACGCTTCTCC 61.372 60.000 0.00 0.00 39.92 3.71
2530 2536 1.986575 GCTGGATTGCCACGCTTCTC 61.987 60.000 0.00 0.00 39.92 2.87
2531 2537 2.042831 GCTGGATTGCCACGCTTCT 61.043 57.895 0.00 0.00 39.92 2.85
2532 2538 2.262471 CTGCTGGATTGCCACGCTTC 62.262 60.000 0.00 0.00 39.92 3.86
2533 2539 2.282391 TGCTGGATTGCCACGCTT 60.282 55.556 0.00 0.00 39.92 4.68
2534 2540 2.749044 CTGCTGGATTGCCACGCT 60.749 61.111 0.00 0.00 39.92 5.07
2535 2541 3.818787 CCTGCTGGATTGCCACGC 61.819 66.667 2.92 0.00 39.92 5.34
2536 2542 3.136123 CCCTGCTGGATTGCCACG 61.136 66.667 11.88 0.00 39.92 4.94
2537 2543 3.455469 GCCCTGCTGGATTGCCAC 61.455 66.667 11.88 0.00 39.92 5.01
2538 2544 3.228243 AAGCCCTGCTGGATTGCCA 62.228 57.895 11.88 0.00 42.45 4.92
2539 2545 2.363406 AAGCCCTGCTGGATTGCC 60.363 61.111 11.88 0.00 42.45 4.52
2540 2546 2.768492 CGAAGCCCTGCTGGATTGC 61.768 63.158 11.88 6.22 44.61 3.56
2541 2547 3.506108 CGAAGCCCTGCTGGATTG 58.494 61.111 11.88 0.00 44.61 2.67
2554 2560 3.726517 CCGTGGTGCTTGGCGAAG 61.727 66.667 3.77 3.77 0.00 3.79
2558 2564 4.329545 TCTCCCGTGGTGCTTGGC 62.330 66.667 0.00 0.00 0.00 4.52
2559 2565 2.046892 CTCTCCCGTGGTGCTTGG 60.047 66.667 0.00 0.00 0.00 3.61
2560 2566 2.046892 CCTCTCCCGTGGTGCTTG 60.047 66.667 0.00 0.00 0.00 4.01
2561 2567 2.203788 TCCTCTCCCGTGGTGCTT 60.204 61.111 0.00 0.00 0.00 3.91
2562 2568 2.681778 CTCCTCTCCCGTGGTGCT 60.682 66.667 0.00 0.00 0.00 4.40
2563 2569 3.775654 CCTCCTCTCCCGTGGTGC 61.776 72.222 0.00 0.00 0.00 5.01
2564 2570 2.037367 TCCTCCTCTCCCGTGGTG 59.963 66.667 0.00 0.00 0.00 4.17
2565 2571 2.037527 GTCCTCCTCTCCCGTGGT 59.962 66.667 0.00 0.00 0.00 4.16
2566 2572 3.141488 CGTCCTCCTCTCCCGTGG 61.141 72.222 0.00 0.00 0.00 4.94
2567 2573 2.045242 TCGTCCTCCTCTCCCGTG 60.045 66.667 0.00 0.00 0.00 4.94
2568 2574 2.045143 GTCGTCCTCCTCTCCCGT 60.045 66.667 0.00 0.00 0.00 5.28
2569 2575 1.378778 AAGTCGTCCTCCTCTCCCG 60.379 63.158 0.00 0.00 0.00 5.14
2570 2576 1.324005 CCAAGTCGTCCTCCTCTCCC 61.324 65.000 0.00 0.00 0.00 4.30
2571 2577 1.324005 CCCAAGTCGTCCTCCTCTCC 61.324 65.000 0.00 0.00 0.00 3.71
2572 2578 0.323542 TCCCAAGTCGTCCTCCTCTC 60.324 60.000 0.00 0.00 0.00 3.20
2573 2579 0.323908 CTCCCAAGTCGTCCTCCTCT 60.324 60.000 0.00 0.00 0.00 3.69
2574 2580 0.323542 TCTCCCAAGTCGTCCTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
2575 2581 0.323908 CTCTCCCAAGTCGTCCTCCT 60.324 60.000 0.00 0.00 0.00 3.69
2576 2582 1.324005 CCTCTCCCAAGTCGTCCTCC 61.324 65.000 0.00 0.00 0.00 4.30
2577 2583 1.324005 CCCTCTCCCAAGTCGTCCTC 61.324 65.000 0.00 0.00 0.00 3.71
2578 2584 1.305381 CCCTCTCCCAAGTCGTCCT 60.305 63.158 0.00 0.00 0.00 3.85
2579 2585 2.359967 CCCCTCTCCCAAGTCGTCC 61.360 68.421 0.00 0.00 0.00 4.79
2580 2586 2.359967 CCCCCTCTCCCAAGTCGTC 61.360 68.421 0.00 0.00 0.00 4.20
2581 2587 2.284699 CCCCCTCTCCCAAGTCGT 60.285 66.667 0.00 0.00 0.00 4.34
2582 2588 2.038975 TCCCCCTCTCCCAAGTCG 59.961 66.667 0.00 0.00 0.00 4.18
2583 2589 1.690985 CCTCCCCCTCTCCCAAGTC 60.691 68.421 0.00 0.00 0.00 3.01
2584 2590 2.456840 CCTCCCCCTCTCCCAAGT 59.543 66.667 0.00 0.00 0.00 3.16
2585 2591 2.367512 CCCTCCCCCTCTCCCAAG 60.368 72.222 0.00 0.00 0.00 3.61
2586 2592 4.760220 GCCCTCCCCCTCTCCCAA 62.760 72.222 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.