Multiple sequence alignment - TraesCS6B01G131300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G131300 chr6B 100.000 2368 0 0 1 2368 128432884 128430517 0 4373
1 TraesCS6B01G131300 chr6B 97.382 1948 47 4 425 2368 306992926 306990979 0 3312
2 TraesCS6B01G131300 chr7D 97.948 1949 35 5 425 2368 203518540 203520488 0 3373
3 TraesCS6B01G131300 chr7B 97.744 1950 38 6 425 2368 644470505 644472454 0 3352
4 TraesCS6B01G131300 chr7A 97.641 1950 40 6 425 2368 60120504 60118555 0 3341
5 TraesCS6B01G131300 chr7A 97.128 1950 50 6 425 2368 63429712 63431661 0 3286
6 TraesCS6B01G131300 chr7A 96.528 432 14 1 1 432 734968191 734968621 0 713
7 TraesCS6B01G131300 chr4D 97.536 1948 44 4 425 2368 123719566 123721513 0 3328
8 TraesCS6B01G131300 chr3A 97.486 1949 43 6 425 2368 633114312 633116259 0 3323
9 TraesCS6B01G131300 chr1B 97.231 1950 48 6 425 2368 638697602 638695653 0 3297
10 TraesCS6B01G131300 chr1B 97.229 1949 45 9 425 2368 672482221 672484165 0 3291
11 TraesCS6B01G131300 chr1B 97.190 427 12 0 1 427 324818287 324817861 0 723
12 TraesCS6B01G131300 chr1B 96.941 425 13 0 1 425 92175279 92175703 0 713
13 TraesCS6B01G131300 chr3B 97.418 426 11 0 1 426 402957851 402958276 0 726
14 TraesCS6B01G131300 chr2B 97.412 425 11 0 1 425 680641582 680642006 0 725
15 TraesCS6B01G131300 chr2B 95.928 442 15 3 1 441 186576081 186576520 0 713
16 TraesCS6B01G131300 chr5B 96.568 437 14 1 1 436 141470964 141471400 0 723
17 TraesCS6B01G131300 chr5B 95.111 450 19 3 1 448 275594104 275593656 0 706
18 TraesCS6B01G131300 chr4B 97.176 425 12 0 1 425 406344230 406344654 0 719


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G131300 chr6B 128430517 128432884 2367 True 4373 4373 100.000 1 2368 1 chr6B.!!$R1 2367
1 TraesCS6B01G131300 chr6B 306990979 306992926 1947 True 3312 3312 97.382 425 2368 1 chr6B.!!$R2 1943
2 TraesCS6B01G131300 chr7D 203518540 203520488 1948 False 3373 3373 97.948 425 2368 1 chr7D.!!$F1 1943
3 TraesCS6B01G131300 chr7B 644470505 644472454 1949 False 3352 3352 97.744 425 2368 1 chr7B.!!$F1 1943
4 TraesCS6B01G131300 chr7A 60118555 60120504 1949 True 3341 3341 97.641 425 2368 1 chr7A.!!$R1 1943
5 TraesCS6B01G131300 chr7A 63429712 63431661 1949 False 3286 3286 97.128 425 2368 1 chr7A.!!$F1 1943
6 TraesCS6B01G131300 chr4D 123719566 123721513 1947 False 3328 3328 97.536 425 2368 1 chr4D.!!$F1 1943
7 TraesCS6B01G131300 chr3A 633114312 633116259 1947 False 3323 3323 97.486 425 2368 1 chr3A.!!$F1 1943
8 TraesCS6B01G131300 chr1B 638695653 638697602 1949 True 3297 3297 97.231 425 2368 1 chr1B.!!$R2 1943
9 TraesCS6B01G131300 chr1B 672482221 672484165 1944 False 3291 3291 97.229 425 2368 1 chr1B.!!$F2 1943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.039618 GCCAAGGAAAGTCCCATCCA 59.96 55.0 0.0 0.0 37.19 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1733 0.338467 TCACTAGGGCCTGCTTCCTA 59.662 55.0 18.53 0.0 34.75 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.409064 TGGTAACAGGAGACAAGGGA 57.591 50.000 0.00 0.00 46.17 4.20
31 32 1.975680 TGGTAACAGGAGACAAGGGAC 59.024 52.381 0.00 0.00 46.17 4.46
32 33 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
33 34 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
34 35 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
35 36 0.469331 ACAGGAGACAAGGGACACGA 60.469 55.000 0.00 0.00 0.00 4.35
36 37 0.898320 CAGGAGACAAGGGACACGAT 59.102 55.000 0.00 0.00 0.00 3.73
37 38 0.898320 AGGAGACAAGGGACACGATG 59.102 55.000 0.00 0.00 0.00 3.84
38 39 0.608640 GGAGACAAGGGACACGATGT 59.391 55.000 0.00 0.00 0.00 3.06
39 40 1.002087 GGAGACAAGGGACACGATGTT 59.998 52.381 0.00 0.00 0.00 2.71
40 41 2.550208 GGAGACAAGGGACACGATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
41 42 3.139077 GAGACAAGGGACACGATGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
42 43 3.551846 AGACAAGGGACACGATGTTTTT 58.448 40.909 0.00 0.00 0.00 1.94
43 44 4.710324 AGACAAGGGACACGATGTTTTTA 58.290 39.130 0.00 0.00 0.00 1.52
44 45 4.514066 AGACAAGGGACACGATGTTTTTAC 59.486 41.667 0.00 0.00 0.00 2.01
45 46 3.566742 ACAAGGGACACGATGTTTTTACC 59.433 43.478 0.00 0.00 0.00 2.85
46 47 2.786777 AGGGACACGATGTTTTTACCC 58.213 47.619 0.00 0.00 31.54 3.69
47 48 2.106857 AGGGACACGATGTTTTTACCCA 59.893 45.455 0.00 0.00 33.25 4.51
48 49 2.486592 GGGACACGATGTTTTTACCCAG 59.513 50.000 0.00 0.00 31.68 4.45
49 50 2.486592 GGACACGATGTTTTTACCCAGG 59.513 50.000 0.00 0.00 0.00 4.45
50 51 3.143728 GACACGATGTTTTTACCCAGGT 58.856 45.455 0.00 0.00 0.00 4.00
51 52 3.558033 ACACGATGTTTTTACCCAGGTT 58.442 40.909 0.00 0.00 0.00 3.50
52 53 3.566742 ACACGATGTTTTTACCCAGGTTC 59.433 43.478 0.00 0.00 0.00 3.62
53 54 2.809696 ACGATGTTTTTACCCAGGTTCG 59.190 45.455 0.00 0.00 0.00 3.95
54 55 2.160813 CGATGTTTTTACCCAGGTTCGG 59.839 50.000 0.00 0.00 0.00 4.30
62 63 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
63 64 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
64 65 4.377760 AGGTTCGGGCCCTCTCGA 62.378 66.667 22.43 9.26 0.00 4.04
65 66 3.155167 GGTTCGGGCCCTCTCGAT 61.155 66.667 22.43 0.00 35.25 3.59
66 67 2.107141 GTTCGGGCCCTCTCGATG 59.893 66.667 22.43 1.43 35.25 3.84
67 68 3.154473 TTCGGGCCCTCTCGATGG 61.154 66.667 22.43 0.54 35.25 3.51
68 69 3.672338 TTCGGGCCCTCTCGATGGA 62.672 63.158 22.43 3.53 35.25 3.41
69 70 3.610669 CGGGCCCTCTCGATGGAG 61.611 72.222 22.43 0.00 41.89 3.86
77 78 3.180891 CCTCTCGATGGAGGTAAAACC 57.819 52.381 11.66 0.00 45.65 3.27
78 79 2.158943 CCTCTCGATGGAGGTAAAACCC 60.159 54.545 11.66 0.00 45.65 4.11
79 80 2.766828 CTCTCGATGGAGGTAAAACCCT 59.233 50.000 4.78 0.00 39.75 4.34
80 81 3.958798 CTCTCGATGGAGGTAAAACCCTA 59.041 47.826 4.78 0.00 39.75 3.53
81 82 3.703052 TCTCGATGGAGGTAAAACCCTAC 59.297 47.826 4.78 0.00 39.75 3.18
82 83 3.705072 CTCGATGGAGGTAAAACCCTACT 59.295 47.826 0.00 0.00 39.75 2.57
83 84 3.703052 TCGATGGAGGTAAAACCCTACTC 59.297 47.826 0.00 0.00 39.75 2.59
84 85 3.181468 CGATGGAGGTAAAACCCTACTCC 60.181 52.174 0.00 0.00 39.75 3.85
85 86 3.572661 TGGAGGTAAAACCCTACTCCT 57.427 47.619 10.05 0.00 39.75 3.69
86 87 3.178865 TGGAGGTAAAACCCTACTCCTG 58.821 50.000 10.05 0.00 39.75 3.86
87 88 2.093075 GGAGGTAAAACCCTACTCCTGC 60.093 54.545 0.00 0.00 39.75 4.85
88 89 2.838813 GAGGTAAAACCCTACTCCTGCT 59.161 50.000 0.00 0.00 39.75 4.24
89 90 3.257578 AGGTAAAACCCTACTCCTGCTT 58.742 45.455 0.00 0.00 39.75 3.91
90 91 3.009143 AGGTAAAACCCTACTCCTGCTTG 59.991 47.826 0.00 0.00 39.75 4.01
91 92 3.008704 GGTAAAACCCTACTCCTGCTTGA 59.991 47.826 0.00 0.00 30.04 3.02
92 93 4.324331 GGTAAAACCCTACTCCTGCTTGAT 60.324 45.833 0.00 0.00 30.04 2.57
93 94 4.388577 AAAACCCTACTCCTGCTTGATT 57.611 40.909 0.00 0.00 0.00 2.57
94 95 3.356529 AACCCTACTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
95 96 2.551270 ACCCTACTCCTGCTTGATTGA 58.449 47.619 0.00 0.00 0.00 2.57
96 97 3.118531 ACCCTACTCCTGCTTGATTGAT 58.881 45.455 0.00 0.00 0.00 2.57
97 98 4.298626 ACCCTACTCCTGCTTGATTGATA 58.701 43.478 0.00 0.00 0.00 2.15
98 99 4.910304 ACCCTACTCCTGCTTGATTGATAT 59.090 41.667 0.00 0.00 0.00 1.63
99 100 5.370880 ACCCTACTCCTGCTTGATTGATATT 59.629 40.000 0.00 0.00 0.00 1.28
100 101 5.704515 CCCTACTCCTGCTTGATTGATATTG 59.295 44.000 0.00 0.00 0.00 1.90
101 102 6.464892 CCCTACTCCTGCTTGATTGATATTGA 60.465 42.308 0.00 0.00 0.00 2.57
102 103 7.166851 CCTACTCCTGCTTGATTGATATTGAT 58.833 38.462 0.00 0.00 0.00 2.57
103 104 6.879276 ACTCCTGCTTGATTGATATTGATG 57.121 37.500 0.00 0.00 0.00 3.07
104 105 6.598503 ACTCCTGCTTGATTGATATTGATGA 58.401 36.000 0.00 0.00 0.00 2.92
105 106 7.232188 ACTCCTGCTTGATTGATATTGATGAT 58.768 34.615 0.00 0.00 0.00 2.45
106 107 8.380867 ACTCCTGCTTGATTGATATTGATGATA 58.619 33.333 0.00 0.00 0.00 2.15
107 108 9.397280 CTCCTGCTTGATTGATATTGATGATAT 57.603 33.333 0.00 0.00 33.58 1.63
108 109 9.174166 TCCTGCTTGATTGATATTGATGATATG 57.826 33.333 0.00 0.00 31.00 1.78
109 110 8.406297 CCTGCTTGATTGATATTGATGATATGG 58.594 37.037 0.00 0.00 31.00 2.74
110 111 8.288689 TGCTTGATTGATATTGATGATATGGG 57.711 34.615 0.00 0.00 31.00 4.00
111 112 7.891712 TGCTTGATTGATATTGATGATATGGGT 59.108 33.333 0.00 0.00 31.00 4.51
112 113 9.399797 GCTTGATTGATATTGATGATATGGGTA 57.600 33.333 0.00 0.00 31.00 3.69
122 123 7.914427 TTGATGATATGGGTAGTACAAGAGT 57.086 36.000 2.06 0.00 0.00 3.24
123 124 9.601810 ATTGATGATATGGGTAGTACAAGAGTA 57.398 33.333 2.06 0.00 0.00 2.59
124 125 8.637196 TGATGATATGGGTAGTACAAGAGTAG 57.363 38.462 2.06 0.00 0.00 2.57
125 126 8.445588 TGATGATATGGGTAGTACAAGAGTAGA 58.554 37.037 2.06 0.00 0.00 2.59
126 127 9.469097 GATGATATGGGTAGTACAAGAGTAGAT 57.531 37.037 2.06 0.00 0.00 1.98
127 128 8.865420 TGATATGGGTAGTACAAGAGTAGATC 57.135 38.462 2.06 0.00 0.00 2.75
128 129 7.889073 TGATATGGGTAGTACAAGAGTAGATCC 59.111 40.741 2.06 0.00 0.00 3.36
129 130 5.461516 TGGGTAGTACAAGAGTAGATCCA 57.538 43.478 2.06 0.00 29.29 3.41
130 131 5.198965 TGGGTAGTACAAGAGTAGATCCAC 58.801 45.833 2.06 0.00 27.63 4.02
131 132 4.583907 GGGTAGTACAAGAGTAGATCCACC 59.416 50.000 2.06 0.00 0.00 4.61
132 133 5.198965 GGTAGTACAAGAGTAGATCCACCA 58.801 45.833 2.06 0.00 0.00 4.17
133 134 5.067544 GGTAGTACAAGAGTAGATCCACCAC 59.932 48.000 2.06 0.00 0.00 4.16
134 135 3.695060 AGTACAAGAGTAGATCCACCACG 59.305 47.826 0.00 0.00 0.00 4.94
135 136 2.803956 ACAAGAGTAGATCCACCACGA 58.196 47.619 0.00 0.00 0.00 4.35
136 137 2.755655 ACAAGAGTAGATCCACCACGAG 59.244 50.000 0.00 0.00 0.00 4.18
137 138 3.017442 CAAGAGTAGATCCACCACGAGA 58.983 50.000 0.00 0.00 0.00 4.04
138 139 3.586470 AGAGTAGATCCACCACGAGAT 57.414 47.619 0.00 0.00 0.00 2.75
139 140 3.482436 AGAGTAGATCCACCACGAGATC 58.518 50.000 0.00 0.00 39.38 2.75
140 141 3.117851 AGAGTAGATCCACCACGAGATCA 60.118 47.826 0.00 0.00 41.16 2.92
141 142 3.632333 AGTAGATCCACCACGAGATCAA 58.368 45.455 0.00 0.00 41.16 2.57
142 143 3.634448 AGTAGATCCACCACGAGATCAAG 59.366 47.826 0.00 0.00 41.16 3.02
143 144 1.759445 AGATCCACCACGAGATCAAGG 59.241 52.381 0.00 0.00 41.16 3.61
144 145 1.757118 GATCCACCACGAGATCAAGGA 59.243 52.381 0.00 0.00 39.00 3.36
145 146 1.186200 TCCACCACGAGATCAAGGAG 58.814 55.000 0.00 0.00 0.00 3.69
146 147 0.176680 CCACCACGAGATCAAGGAGG 59.823 60.000 0.00 0.00 0.00 4.30
147 148 0.460987 CACCACGAGATCAAGGAGGC 60.461 60.000 0.00 0.00 0.00 4.70
148 149 0.616111 ACCACGAGATCAAGGAGGCT 60.616 55.000 0.00 0.00 0.00 4.58
149 150 1.342076 ACCACGAGATCAAGGAGGCTA 60.342 52.381 0.00 0.00 0.00 3.93
150 151 1.757118 CCACGAGATCAAGGAGGCTAA 59.243 52.381 0.00 0.00 0.00 3.09
151 152 2.168521 CCACGAGATCAAGGAGGCTAAA 59.831 50.000 0.00 0.00 0.00 1.85
152 153 3.190874 CACGAGATCAAGGAGGCTAAAC 58.809 50.000 0.00 0.00 0.00 2.01
153 154 2.168728 ACGAGATCAAGGAGGCTAAACC 59.831 50.000 0.00 0.00 39.61 3.27
154 155 2.483889 CGAGATCAAGGAGGCTAAACCC 60.484 54.545 0.00 0.00 40.58 4.11
155 156 2.774809 GAGATCAAGGAGGCTAAACCCT 59.225 50.000 0.00 0.00 40.58 4.34
156 157 2.507471 AGATCAAGGAGGCTAAACCCTG 59.493 50.000 0.00 0.00 40.58 4.45
157 158 0.991920 TCAAGGAGGCTAAACCCTGG 59.008 55.000 0.00 0.00 40.58 4.45
158 159 0.991920 CAAGGAGGCTAAACCCTGGA 59.008 55.000 0.00 0.00 40.58 3.86
159 160 1.354368 CAAGGAGGCTAAACCCTGGAA 59.646 52.381 0.00 0.00 40.58 3.53
160 161 1.290134 AGGAGGCTAAACCCTGGAAG 58.710 55.000 0.00 0.00 40.58 3.46
161 162 0.394488 GGAGGCTAAACCCTGGAAGC 60.394 60.000 0.00 0.00 40.58 3.86
162 163 0.621082 GAGGCTAAACCCTGGAAGCT 59.379 55.000 0.00 0.00 40.58 3.74
163 164 1.838077 GAGGCTAAACCCTGGAAGCTA 59.162 52.381 0.00 0.00 40.58 3.32
164 165 1.840635 AGGCTAAACCCTGGAAGCTAG 59.159 52.381 0.00 0.00 40.58 3.42
165 166 1.669604 GCTAAACCCTGGAAGCTAGC 58.330 55.000 6.62 6.62 32.18 3.42
166 167 1.747552 GCTAAACCCTGGAAGCTAGCC 60.748 57.143 12.13 0.00 32.18 3.93
167 168 1.840635 CTAAACCCTGGAAGCTAGCCT 59.159 52.381 12.13 0.00 0.00 4.58
168 169 1.966845 AAACCCTGGAAGCTAGCCTA 58.033 50.000 12.13 0.00 0.00 3.93
169 170 2.198334 AACCCTGGAAGCTAGCCTAT 57.802 50.000 12.13 0.00 0.00 2.57
170 171 1.428869 ACCCTGGAAGCTAGCCTATG 58.571 55.000 12.13 0.00 0.00 2.23
171 172 0.689623 CCCTGGAAGCTAGCCTATGG 59.310 60.000 12.13 7.70 0.00 2.74
172 173 1.428869 CCTGGAAGCTAGCCTATGGT 58.571 55.000 12.13 0.00 0.00 3.55
173 174 2.609747 CCTGGAAGCTAGCCTATGGTA 58.390 52.381 12.13 0.00 0.00 3.25
174 175 3.177228 CCTGGAAGCTAGCCTATGGTAT 58.823 50.000 12.13 0.00 0.00 2.73
175 176 3.055530 CCTGGAAGCTAGCCTATGGTATG 60.056 52.174 12.13 0.00 0.00 2.39
176 177 3.834813 CTGGAAGCTAGCCTATGGTATGA 59.165 47.826 12.13 0.00 0.00 2.15
177 178 4.429505 TGGAAGCTAGCCTATGGTATGAT 58.570 43.478 12.13 0.00 0.00 2.45
178 179 4.846367 TGGAAGCTAGCCTATGGTATGATT 59.154 41.667 12.13 0.00 0.00 2.57
179 180 5.181748 GGAAGCTAGCCTATGGTATGATTG 58.818 45.833 12.13 0.00 0.00 2.67
180 181 5.280215 GGAAGCTAGCCTATGGTATGATTGT 60.280 44.000 12.13 0.00 0.00 2.71
181 182 5.832539 AGCTAGCCTATGGTATGATTGTT 57.167 39.130 12.13 0.00 0.00 2.83
182 183 5.555017 AGCTAGCCTATGGTATGATTGTTG 58.445 41.667 12.13 0.00 0.00 3.33
183 184 5.072329 AGCTAGCCTATGGTATGATTGTTGT 59.928 40.000 12.13 0.00 0.00 3.32
184 185 5.765182 GCTAGCCTATGGTATGATTGTTGTT 59.235 40.000 2.29 0.00 0.00 2.83
185 186 6.073003 GCTAGCCTATGGTATGATTGTTGTTC 60.073 42.308 2.29 0.00 0.00 3.18
186 187 4.816385 AGCCTATGGTATGATTGTTGTTCG 59.184 41.667 0.00 0.00 0.00 3.95
187 188 4.574828 GCCTATGGTATGATTGTTGTTCGT 59.425 41.667 0.00 0.00 0.00 3.85
188 189 5.277345 GCCTATGGTATGATTGTTGTTCGTC 60.277 44.000 0.00 0.00 0.00 4.20
189 190 5.236478 CCTATGGTATGATTGTTGTTCGTCC 59.764 44.000 0.00 0.00 0.00 4.79
190 191 4.280436 TGGTATGATTGTTGTTCGTCCT 57.720 40.909 0.00 0.00 0.00 3.85
191 192 5.408880 TGGTATGATTGTTGTTCGTCCTA 57.591 39.130 0.00 0.00 0.00 2.94
192 193 5.172934 TGGTATGATTGTTGTTCGTCCTAC 58.827 41.667 0.00 0.00 0.00 3.18
193 194 4.266976 GGTATGATTGTTGTTCGTCCTACG 59.733 45.833 0.00 0.00 44.19 3.51
194 195 2.679450 TGATTGTTGTTCGTCCTACGG 58.321 47.619 0.00 0.00 42.81 4.02
195 196 2.296752 TGATTGTTGTTCGTCCTACGGA 59.703 45.455 0.00 0.00 42.81 4.69
211 212 2.738013 CGGACTAAAACTCTCCGGTT 57.262 50.000 0.00 0.00 42.76 4.44
212 213 3.036075 CGGACTAAAACTCTCCGGTTT 57.964 47.619 0.00 0.00 42.76 3.27
213 214 4.178545 CGGACTAAAACTCTCCGGTTTA 57.821 45.455 0.00 0.00 42.76 2.01
214 215 4.752146 CGGACTAAAACTCTCCGGTTTAT 58.248 43.478 0.00 0.00 42.76 1.40
215 216 5.894807 CGGACTAAAACTCTCCGGTTTATA 58.105 41.667 0.00 0.00 42.76 0.98
216 217 6.510536 CGGACTAAAACTCTCCGGTTTATAT 58.489 40.000 0.00 0.00 42.76 0.86
217 218 7.651808 CGGACTAAAACTCTCCGGTTTATATA 58.348 38.462 0.00 0.00 42.76 0.86
218 219 7.806960 CGGACTAAAACTCTCCGGTTTATATAG 59.193 40.741 0.00 0.50 42.76 1.31
219 220 8.854117 GGACTAAAACTCTCCGGTTTATATAGA 58.146 37.037 0.00 0.00 38.30 1.98
220 221 9.676195 GACTAAAACTCTCCGGTTTATATAGAC 57.324 37.037 0.00 0.00 38.30 2.59
221 222 9.193806 ACTAAAACTCTCCGGTTTATATAGACA 57.806 33.333 0.00 0.00 38.30 3.41
222 223 9.460906 CTAAAACTCTCCGGTTTATATAGACAC 57.539 37.037 0.00 0.00 38.30 3.67
223 224 6.402456 AACTCTCCGGTTTATATAGACACC 57.598 41.667 0.00 2.59 0.00 4.16
229 230 5.044428 CGGTTTATATAGACACCGGAGAG 57.956 47.826 15.65 0.00 46.92 3.20
230 231 4.082895 CGGTTTATATAGACACCGGAGAGG 60.083 50.000 15.65 0.00 46.92 3.69
231 232 4.220163 GGTTTATATAGACACCGGAGAGGG 59.780 50.000 9.46 0.00 46.96 4.30
232 233 1.926108 ATATAGACACCGGAGAGGGC 58.074 55.000 9.46 0.00 46.96 5.19
233 234 0.851469 TATAGACACCGGAGAGGGCT 59.149 55.000 9.46 4.41 46.96 5.19
234 235 0.851469 ATAGACACCGGAGAGGGCTA 59.149 55.000 9.46 6.85 46.96 3.93
235 236 0.183014 TAGACACCGGAGAGGGCTAG 59.817 60.000 9.46 0.00 46.96 3.42
236 237 2.042843 ACACCGGAGAGGGCTAGG 60.043 66.667 9.46 0.00 46.96 3.02
237 238 2.840102 CACCGGAGAGGGCTAGGG 60.840 72.222 9.46 0.00 46.96 3.53
238 239 3.357082 ACCGGAGAGGGCTAGGGT 61.357 66.667 9.46 0.00 46.96 4.34
239 240 2.041819 CCGGAGAGGGCTAGGGTT 60.042 66.667 0.00 0.00 35.97 4.11
240 241 1.232216 CCGGAGAGGGCTAGGGTTA 59.768 63.158 0.00 0.00 35.97 2.85
241 242 1.114119 CCGGAGAGGGCTAGGGTTAC 61.114 65.000 0.00 0.00 35.97 2.50
242 243 0.396695 CGGAGAGGGCTAGGGTTACA 60.397 60.000 0.00 0.00 0.00 2.41
243 244 1.121378 GGAGAGGGCTAGGGTTACAC 58.879 60.000 0.00 0.00 0.00 2.90
244 245 1.621622 GGAGAGGGCTAGGGTTACACA 60.622 57.143 0.00 0.00 0.00 3.72
245 246 1.757699 GAGAGGGCTAGGGTTACACAG 59.242 57.143 0.00 0.00 0.00 3.66
246 247 1.361543 AGAGGGCTAGGGTTACACAGA 59.638 52.381 0.00 0.00 0.00 3.41
247 248 1.757699 GAGGGCTAGGGTTACACAGAG 59.242 57.143 0.00 0.00 0.00 3.35
248 249 1.078989 AGGGCTAGGGTTACACAGAGT 59.921 52.381 0.00 0.00 0.00 3.24
249 250 1.481363 GGGCTAGGGTTACACAGAGTC 59.519 57.143 0.00 0.00 0.00 3.36
250 251 1.134560 GGCTAGGGTTACACAGAGTCG 59.865 57.143 0.00 0.00 0.00 4.18
251 252 1.134560 GCTAGGGTTACACAGAGTCGG 59.865 57.143 0.00 0.00 0.00 4.79
252 253 2.444421 CTAGGGTTACACAGAGTCGGT 58.556 52.381 0.00 0.00 0.00 4.69
253 254 1.713297 AGGGTTACACAGAGTCGGTT 58.287 50.000 0.00 0.00 0.00 4.44
254 255 2.880443 AGGGTTACACAGAGTCGGTTA 58.120 47.619 0.00 0.00 0.00 2.85
255 256 2.560105 AGGGTTACACAGAGTCGGTTAC 59.440 50.000 0.00 0.00 0.00 2.50
256 257 2.297033 GGGTTACACAGAGTCGGTTACA 59.703 50.000 0.00 0.00 0.00 2.41
257 258 3.243839 GGGTTACACAGAGTCGGTTACAA 60.244 47.826 0.00 0.00 0.00 2.41
258 259 4.562143 GGGTTACACAGAGTCGGTTACAAT 60.562 45.833 0.00 0.00 0.00 2.71
259 260 4.387862 GGTTACACAGAGTCGGTTACAATG 59.612 45.833 0.00 0.00 0.00 2.82
260 261 3.040147 ACACAGAGTCGGTTACAATGG 57.960 47.619 0.00 0.00 0.00 3.16
261 262 2.367567 ACACAGAGTCGGTTACAATGGT 59.632 45.455 0.00 0.00 0.00 3.55
262 263 3.575256 ACACAGAGTCGGTTACAATGGTA 59.425 43.478 0.00 0.00 0.00 3.25
263 264 4.174009 CACAGAGTCGGTTACAATGGTAG 58.826 47.826 0.00 0.00 0.00 3.18
264 265 3.194968 ACAGAGTCGGTTACAATGGTAGG 59.805 47.826 0.00 0.00 0.00 3.18
265 266 3.446161 CAGAGTCGGTTACAATGGTAGGA 59.554 47.826 0.00 0.00 0.00 2.94
266 267 3.700038 AGAGTCGGTTACAATGGTAGGAG 59.300 47.826 0.00 0.00 0.00 3.69
267 268 3.698040 GAGTCGGTTACAATGGTAGGAGA 59.302 47.826 0.00 0.00 0.00 3.71
268 269 4.287552 AGTCGGTTACAATGGTAGGAGAT 58.712 43.478 0.00 0.00 0.00 2.75
269 270 4.341520 AGTCGGTTACAATGGTAGGAGATC 59.658 45.833 0.00 0.00 0.00 2.75
270 271 4.341520 GTCGGTTACAATGGTAGGAGATCT 59.658 45.833 0.00 0.00 0.00 2.75
271 272 5.533903 GTCGGTTACAATGGTAGGAGATCTA 59.466 44.000 0.00 0.00 0.00 1.98
272 273 5.533903 TCGGTTACAATGGTAGGAGATCTAC 59.466 44.000 0.00 0.00 45.78 2.59
284 285 7.410800 GTAGGAGATCTACATATCCGTATCG 57.589 44.000 7.93 0.00 44.22 2.92
285 286 4.817464 AGGAGATCTACATATCCGTATCGC 59.183 45.833 7.93 0.00 44.22 4.58
286 287 4.023878 GGAGATCTACATATCCGTATCGCC 60.024 50.000 0.00 0.00 30.60 5.54
287 288 4.524053 AGATCTACATATCCGTATCGCCA 58.476 43.478 0.00 0.00 0.00 5.69
288 289 4.948004 AGATCTACATATCCGTATCGCCAA 59.052 41.667 0.00 0.00 0.00 4.52
289 290 4.696899 TCTACATATCCGTATCGCCAAG 57.303 45.455 0.00 0.00 0.00 3.61
290 291 2.080286 ACATATCCGTATCGCCAAGC 57.920 50.000 0.00 0.00 0.00 4.01
291 292 1.618837 ACATATCCGTATCGCCAAGCT 59.381 47.619 0.00 0.00 0.00 3.74
292 293 2.037251 ACATATCCGTATCGCCAAGCTT 59.963 45.455 0.00 0.00 0.00 3.74
293 294 2.148916 TATCCGTATCGCCAAGCTTG 57.851 50.000 19.93 19.93 0.00 4.01
294 295 1.160329 ATCCGTATCGCCAAGCTTGC 61.160 55.000 21.43 14.85 0.00 4.01
295 296 2.709475 CGTATCGCCAAGCTTGCC 59.291 61.111 21.43 9.45 0.00 4.52
296 297 1.815421 CGTATCGCCAAGCTTGCCT 60.815 57.895 21.43 7.17 0.00 4.75
297 298 1.369091 CGTATCGCCAAGCTTGCCTT 61.369 55.000 21.43 7.68 0.00 4.35
298 299 0.378610 GTATCGCCAAGCTTGCCTTC 59.621 55.000 21.43 8.32 0.00 3.46
299 300 0.748005 TATCGCCAAGCTTGCCTTCC 60.748 55.000 21.43 5.26 0.00 3.46
300 301 2.769652 ATCGCCAAGCTTGCCTTCCA 62.770 55.000 21.43 1.33 0.00 3.53
301 302 2.653115 GCCAAGCTTGCCTTCCAC 59.347 61.111 21.43 0.12 0.00 4.02
302 303 2.956987 CCAAGCTTGCCTTCCACG 59.043 61.111 21.43 0.62 0.00 4.94
303 304 2.256461 CAAGCTTGCCTTCCACGC 59.744 61.111 14.65 0.00 38.87 5.34
304 305 2.985847 AAGCTTGCCTTCCACGCC 60.986 61.111 0.00 0.00 39.36 5.68
305 306 3.790416 AAGCTTGCCTTCCACGCCA 62.790 57.895 0.00 0.00 39.36 5.69
306 307 3.294493 GCTTGCCTTCCACGCCAA 61.294 61.111 0.00 0.00 32.93 4.52
307 308 2.956987 CTTGCCTTCCACGCCAAG 59.043 61.111 0.00 0.00 0.00 3.61
308 309 2.597217 TTGCCTTCCACGCCAAGG 60.597 61.111 3.73 3.73 43.13 3.61
309 310 3.126703 TTGCCTTCCACGCCAAGGA 62.127 57.895 10.97 0.00 42.94 3.36
310 311 2.282180 GCCTTCCACGCCAAGGAA 60.282 61.111 10.97 5.63 42.94 3.36
311 312 1.901464 GCCTTCCACGCCAAGGAAA 60.901 57.895 10.97 0.00 44.07 3.13
312 313 1.866853 GCCTTCCACGCCAAGGAAAG 61.867 60.000 10.97 2.24 44.07 2.62
313 314 0.537371 CCTTCCACGCCAAGGAAAGT 60.537 55.000 2.12 0.00 44.07 2.66
314 315 0.875059 CTTCCACGCCAAGGAAAGTC 59.125 55.000 0.00 0.00 44.07 3.01
315 316 0.536460 TTCCACGCCAAGGAAAGTCC 60.536 55.000 0.00 0.00 41.94 3.85
316 317 1.971695 CCACGCCAAGGAAAGTCCC 60.972 63.158 0.00 0.00 37.19 4.46
317 318 1.228124 CACGCCAAGGAAAGTCCCA 60.228 57.895 0.00 0.00 37.19 4.37
318 319 0.609131 CACGCCAAGGAAAGTCCCAT 60.609 55.000 0.00 0.00 37.19 4.00
319 320 0.322546 ACGCCAAGGAAAGTCCCATC 60.323 55.000 0.00 0.00 37.19 3.51
320 321 1.032114 CGCCAAGGAAAGTCCCATCC 61.032 60.000 0.00 0.00 37.19 3.51
321 322 0.039618 GCCAAGGAAAGTCCCATCCA 59.960 55.000 0.00 0.00 37.19 3.41
322 323 1.957113 GCCAAGGAAAGTCCCATCCAG 60.957 57.143 0.00 0.00 37.19 3.86
323 324 1.635487 CCAAGGAAAGTCCCATCCAGA 59.365 52.381 0.00 0.00 37.19 3.86
324 325 2.619074 CCAAGGAAAGTCCCATCCAGAC 60.619 54.545 0.00 0.00 37.19 3.51
325 326 2.040278 CAAGGAAAGTCCCATCCAGACA 59.960 50.000 0.00 0.00 37.19 3.41
326 327 1.630878 AGGAAAGTCCCATCCAGACAC 59.369 52.381 0.00 0.00 37.19 3.67
327 328 1.351017 GGAAAGTCCCATCCAGACACA 59.649 52.381 0.00 0.00 36.68 3.72
328 329 2.616510 GGAAAGTCCCATCCAGACACAG 60.617 54.545 0.00 0.00 36.68 3.66
329 330 0.987294 AAGTCCCATCCAGACACAGG 59.013 55.000 0.00 0.00 36.68 4.00
330 331 0.117140 AGTCCCATCCAGACACAGGA 59.883 55.000 0.00 0.00 39.97 3.86
331 332 0.250513 GTCCCATCCAGACACAGGAC 59.749 60.000 0.00 0.00 38.13 3.85
332 333 1.219124 CCCATCCAGACACAGGACG 59.781 63.158 0.00 0.00 38.13 4.79
333 334 1.257750 CCCATCCAGACACAGGACGA 61.258 60.000 0.00 0.00 38.13 4.20
334 335 0.608130 CCATCCAGACACAGGACGAA 59.392 55.000 0.00 0.00 38.13 3.85
335 336 1.404717 CCATCCAGACACAGGACGAAG 60.405 57.143 0.00 0.00 38.13 3.79
354 355 7.820044 ACGAAGTCTTCAATCTTGTATCTTC 57.180 36.000 12.99 0.00 29.74 2.87
355 356 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
356 357 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
357 358 9.521503 CGAAGTCTTCAATCTTGTATCTTCATA 57.478 33.333 12.99 0.00 32.10 2.15
364 365 8.654230 TCAATCTTGTATCTTCATAGTCTTGC 57.346 34.615 0.00 0.00 0.00 4.01
365 366 8.260114 TCAATCTTGTATCTTCATAGTCTTGCA 58.740 33.333 0.00 0.00 0.00 4.08
366 367 8.549548 CAATCTTGTATCTTCATAGTCTTGCAG 58.450 37.037 0.00 0.00 0.00 4.41
367 368 7.175347 TCTTGTATCTTCATAGTCTTGCAGT 57.825 36.000 0.00 0.00 0.00 4.40
368 369 7.615403 TCTTGTATCTTCATAGTCTTGCAGTT 58.385 34.615 0.00 0.00 0.00 3.16
369 370 7.761704 TCTTGTATCTTCATAGTCTTGCAGTTC 59.238 37.037 0.00 0.00 0.00 3.01
370 371 6.036470 TGTATCTTCATAGTCTTGCAGTTCG 58.964 40.000 0.00 0.00 0.00 3.95
371 372 3.849911 TCTTCATAGTCTTGCAGTTCGG 58.150 45.455 0.00 0.00 0.00 4.30
372 373 2.010145 TCATAGTCTTGCAGTTCGGC 57.990 50.000 0.00 0.00 0.00 5.54
373 374 0.647410 CATAGTCTTGCAGTTCGGCG 59.353 55.000 0.00 0.00 36.28 6.46
374 375 0.530744 ATAGTCTTGCAGTTCGGCGA 59.469 50.000 4.99 4.99 36.28 5.54
375 376 0.315886 TAGTCTTGCAGTTCGGCGAA 59.684 50.000 19.83 19.83 36.28 4.70
376 377 0.320771 AGTCTTGCAGTTCGGCGAAT 60.321 50.000 26.42 11.85 36.28 3.34
377 378 0.179215 GTCTTGCAGTTCGGCGAATG 60.179 55.000 26.42 22.64 36.28 2.67
378 379 0.320334 TCTTGCAGTTCGGCGAATGA 60.320 50.000 26.42 13.49 36.28 2.57
379 380 0.729116 CTTGCAGTTCGGCGAATGAT 59.271 50.000 26.42 12.13 36.28 2.45
380 381 0.447406 TTGCAGTTCGGCGAATGATG 59.553 50.000 26.42 23.04 36.28 3.07
381 382 0.390998 TGCAGTTCGGCGAATGATGA 60.391 50.000 26.42 11.59 36.28 2.92
382 383 0.940126 GCAGTTCGGCGAATGATGAT 59.060 50.000 26.42 5.21 0.00 2.45
383 384 2.135139 GCAGTTCGGCGAATGATGATA 58.865 47.619 26.42 0.00 0.00 2.15
384 385 2.156504 GCAGTTCGGCGAATGATGATAG 59.843 50.000 26.42 10.24 0.00 2.08
385 386 3.384668 CAGTTCGGCGAATGATGATAGT 58.615 45.455 26.42 0.00 0.00 2.12
386 387 3.804325 CAGTTCGGCGAATGATGATAGTT 59.196 43.478 26.42 0.00 0.00 2.24
387 388 4.051922 AGTTCGGCGAATGATGATAGTTC 58.948 43.478 26.42 7.95 0.00 3.01
388 389 2.661594 TCGGCGAATGATGATAGTTCG 58.338 47.619 7.35 7.15 45.35 3.95
389 390 1.721389 CGGCGAATGATGATAGTTCGG 59.279 52.381 0.00 0.00 43.45 4.30
390 391 2.863658 GCGAATGATGATAGTTCGGC 57.136 50.000 11.79 3.47 43.45 5.54
391 392 2.408050 GCGAATGATGATAGTTCGGCT 58.592 47.619 11.79 0.00 43.45 5.52
392 393 3.575630 GCGAATGATGATAGTTCGGCTA 58.424 45.455 11.79 0.00 43.45 3.93
393 394 4.177026 GCGAATGATGATAGTTCGGCTAT 58.823 43.478 11.79 1.08 43.45 2.97
405 406 3.557290 GGCTATCCGGACACCCCC 61.557 72.222 6.12 0.00 0.00 5.40
406 407 2.446036 GCTATCCGGACACCCCCT 60.446 66.667 6.12 0.00 0.00 4.79
407 408 1.152398 GCTATCCGGACACCCCCTA 60.152 63.158 6.12 0.00 0.00 3.53
408 409 1.186267 GCTATCCGGACACCCCCTAG 61.186 65.000 6.12 3.64 0.00 3.02
409 410 0.187851 CTATCCGGACACCCCCTAGT 59.812 60.000 6.12 0.00 0.00 2.57
410 411 0.186873 TATCCGGACACCCCCTAGTC 59.813 60.000 6.12 0.00 0.00 2.59
414 415 4.051932 GACACCCCCTAGTCCAGG 57.948 66.667 0.00 0.00 45.07 4.45
423 424 3.176728 CTAGTCCAGGACTCGCTCA 57.823 57.895 26.42 7.13 42.40 4.26
456 457 4.469657 TGTATGTGCCAGGAAGTTTCTTT 58.530 39.130 0.00 0.00 0.00 2.52
457 458 4.278170 TGTATGTGCCAGGAAGTTTCTTTG 59.722 41.667 0.00 0.00 0.00 2.77
521 523 2.083774 GTCGTTGGGATTCATTGCTCA 58.916 47.619 0.00 0.00 0.00 4.26
524 526 3.129113 TCGTTGGGATTCATTGCTCATTG 59.871 43.478 0.00 0.00 0.00 2.82
543 545 4.907188 TTGTGCGGTTATAAGTAACGTG 57.093 40.909 0.00 0.00 40.89 4.49
633 635 2.525629 TCCTCCGGTGAACCTGCA 60.526 61.111 4.76 0.00 0.00 4.41
700 702 2.346284 TTAACCGCACAAGCCTGGGT 62.346 55.000 0.00 0.00 37.52 4.51
774 776 1.609072 GTTTTGAAGCCGAGCCTTTCT 59.391 47.619 0.00 0.00 0.00 2.52
821 823 3.525609 TGATGATTGGTTTAGGTAGGGCA 59.474 43.478 0.00 0.00 0.00 5.36
1094 1098 0.105408 AGGGAAGCGTGTACGTTGTT 59.895 50.000 6.27 0.00 42.22 2.83
1190 1194 1.383803 GAGCAGGGGGACAGGAGAT 60.384 63.158 0.00 0.00 0.00 2.75
1204 1208 4.716025 AGATGGCCATCTCGAGGT 57.284 55.556 37.67 18.75 44.37 3.85
1218 1222 2.941064 CTCGAGGTACATCACGACCTAA 59.059 50.000 8.44 0.00 46.36 2.69
1687 1694 1.216990 CCAGAATTGGTAGCCTCCCT 58.783 55.000 0.00 0.00 39.79 4.20
1713 1720 5.882040 TCAAACATACATTGACAGGGGTTA 58.118 37.500 0.00 0.00 32.10 2.85
1726 1733 4.552674 ACAGGGGTTACCAACAAAAAGAT 58.447 39.130 2.98 0.00 43.89 2.40
1732 1739 6.071560 GGGGTTACCAACAAAAAGATAGGAAG 60.072 42.308 2.98 0.00 39.85 3.46
1733 1740 6.387465 GGTTACCAACAAAAAGATAGGAAGC 58.613 40.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.068741 CCTGTTACCATCCGCCTAGAC 59.931 57.143 0.00 0.00 0.00 2.59
1 2 1.063492 TCCTGTTACCATCCGCCTAGA 60.063 52.381 0.00 0.00 0.00 2.43
2 3 1.341531 CTCCTGTTACCATCCGCCTAG 59.658 57.143 0.00 0.00 0.00 3.02
3 4 1.063492 TCTCCTGTTACCATCCGCCTA 60.063 52.381 0.00 0.00 0.00 3.93
4 5 0.325296 TCTCCTGTTACCATCCGCCT 60.325 55.000 0.00 0.00 0.00 5.52
5 6 0.179081 GTCTCCTGTTACCATCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
6 7 0.535335 TGTCTCCTGTTACCATCCGC 59.465 55.000 0.00 0.00 0.00 5.54
7 8 2.418746 CCTTGTCTCCTGTTACCATCCG 60.419 54.545 0.00 0.00 0.00 4.18
8 9 2.092914 CCCTTGTCTCCTGTTACCATCC 60.093 54.545 0.00 0.00 0.00 3.51
9 10 2.838202 TCCCTTGTCTCCTGTTACCATC 59.162 50.000 0.00 0.00 0.00 3.51
10 11 2.572104 GTCCCTTGTCTCCTGTTACCAT 59.428 50.000 0.00 0.00 0.00 3.55
11 12 1.975680 GTCCCTTGTCTCCTGTTACCA 59.024 52.381 0.00 0.00 0.00 3.25
12 13 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
13 14 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
14 15 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
15 16 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
16 17 0.469331 TCGTGTCCCTTGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
17 18 0.898320 ATCGTGTCCCTTGTCTCCTG 59.102 55.000 0.00 0.00 0.00 3.86
18 19 0.898320 CATCGTGTCCCTTGTCTCCT 59.102 55.000 0.00 0.00 0.00 3.69
19 20 0.608640 ACATCGTGTCCCTTGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
20 21 2.457366 AACATCGTGTCCCTTGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
21 22 2.930826 AAACATCGTGTCCCTTGTCT 57.069 45.000 0.00 0.00 0.00 3.41
22 23 3.982576 AAAAACATCGTGTCCCTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
23 24 3.566742 GGTAAAAACATCGTGTCCCTTGT 59.433 43.478 0.00 0.00 0.00 3.16
24 25 3.057806 GGGTAAAAACATCGTGTCCCTTG 60.058 47.826 0.00 0.00 29.50 3.61
25 26 3.151554 GGGTAAAAACATCGTGTCCCTT 58.848 45.455 0.00 0.00 29.50 3.95
26 27 2.106857 TGGGTAAAAACATCGTGTCCCT 59.893 45.455 10.79 0.00 32.37 4.20
27 28 2.486592 CTGGGTAAAAACATCGTGTCCC 59.513 50.000 0.00 0.00 31.92 4.46
28 29 2.486592 CCTGGGTAAAAACATCGTGTCC 59.513 50.000 0.00 0.00 0.00 4.02
29 30 3.143728 ACCTGGGTAAAAACATCGTGTC 58.856 45.455 0.00 0.00 0.00 3.67
30 31 3.217681 ACCTGGGTAAAAACATCGTGT 57.782 42.857 0.00 0.00 0.00 4.49
31 32 3.364565 CGAACCTGGGTAAAAACATCGTG 60.365 47.826 0.00 0.00 0.00 4.35
32 33 2.809696 CGAACCTGGGTAAAAACATCGT 59.190 45.455 0.00 0.00 0.00 3.73
33 34 2.160813 CCGAACCTGGGTAAAAACATCG 59.839 50.000 0.00 0.00 0.00 3.84
34 35 2.490509 CCCGAACCTGGGTAAAAACATC 59.509 50.000 0.00 0.00 44.76 3.06
35 36 2.521126 CCCGAACCTGGGTAAAAACAT 58.479 47.619 0.00 0.00 44.76 2.71
36 37 1.984066 CCCGAACCTGGGTAAAAACA 58.016 50.000 0.00 0.00 44.76 2.83
45 46 3.787001 GAGAGGGCCCGAACCTGG 61.787 72.222 18.44 0.00 38.79 4.45
46 47 4.148825 CGAGAGGGCCCGAACCTG 62.149 72.222 18.44 1.23 38.79 4.00
47 48 3.680920 ATCGAGAGGGCCCGAACCT 62.681 63.158 18.44 12.55 42.18 3.50
48 49 3.155167 ATCGAGAGGGCCCGAACC 61.155 66.667 18.44 7.31 38.36 3.62
49 50 2.107141 CATCGAGAGGGCCCGAAC 59.893 66.667 18.44 12.45 38.36 3.95
50 51 3.154473 CCATCGAGAGGGCCCGAA 61.154 66.667 18.44 1.01 38.36 4.30
51 52 4.137615 TCCATCGAGAGGGCCCGA 62.138 66.667 18.44 10.63 39.25 5.14
52 53 3.610669 CTCCATCGAGAGGGCCCG 61.611 72.222 18.44 4.06 38.52 6.13
58 59 2.766828 AGGGTTTTACCTCCATCGAGAG 59.233 50.000 0.00 0.00 38.52 3.20
59 60 2.829023 AGGGTTTTACCTCCATCGAGA 58.171 47.619 0.00 0.00 38.52 4.04
60 61 3.705072 AGTAGGGTTTTACCTCCATCGAG 59.295 47.826 0.00 0.00 42.09 4.04
61 62 3.703052 GAGTAGGGTTTTACCTCCATCGA 59.297 47.826 0.00 0.00 42.09 3.59
62 63 3.181468 GGAGTAGGGTTTTACCTCCATCG 60.181 52.174 0.00 0.00 42.09 3.84
63 64 4.038633 AGGAGTAGGGTTTTACCTCCATC 58.961 47.826 6.76 0.00 42.09 3.51
64 65 3.780850 CAGGAGTAGGGTTTTACCTCCAT 59.219 47.826 6.76 0.00 42.09 3.41
65 66 3.178865 CAGGAGTAGGGTTTTACCTCCA 58.821 50.000 6.76 0.00 42.09 3.86
66 67 2.093075 GCAGGAGTAGGGTTTTACCTCC 60.093 54.545 0.00 0.00 42.09 4.30
67 68 2.838813 AGCAGGAGTAGGGTTTTACCTC 59.161 50.000 0.00 0.00 42.09 3.85
68 69 2.917205 AGCAGGAGTAGGGTTTTACCT 58.083 47.619 0.00 0.00 44.75 3.08
69 70 3.008704 TCAAGCAGGAGTAGGGTTTTACC 59.991 47.826 0.00 0.00 37.60 2.85
70 71 4.281898 TCAAGCAGGAGTAGGGTTTTAC 57.718 45.455 0.00 0.00 0.00 2.01
71 72 5.013704 TCAATCAAGCAGGAGTAGGGTTTTA 59.986 40.000 0.00 0.00 0.00 1.52
72 73 4.082125 CAATCAAGCAGGAGTAGGGTTTT 58.918 43.478 0.00 0.00 0.00 2.43
73 74 3.330701 TCAATCAAGCAGGAGTAGGGTTT 59.669 43.478 0.00 0.00 0.00 3.27
74 75 2.912956 TCAATCAAGCAGGAGTAGGGTT 59.087 45.455 0.00 0.00 0.00 4.11
75 76 2.551270 TCAATCAAGCAGGAGTAGGGT 58.449 47.619 0.00 0.00 0.00 4.34
76 77 3.853355 ATCAATCAAGCAGGAGTAGGG 57.147 47.619 0.00 0.00 0.00 3.53
77 78 6.528321 TCAATATCAATCAAGCAGGAGTAGG 58.472 40.000 0.00 0.00 0.00 3.18
78 79 7.876582 TCATCAATATCAATCAAGCAGGAGTAG 59.123 37.037 0.00 0.00 0.00 2.57
79 80 7.738847 TCATCAATATCAATCAAGCAGGAGTA 58.261 34.615 0.00 0.00 0.00 2.59
80 81 6.598503 TCATCAATATCAATCAAGCAGGAGT 58.401 36.000 0.00 0.00 0.00 3.85
81 82 7.689446 ATCATCAATATCAATCAAGCAGGAG 57.311 36.000 0.00 0.00 0.00 3.69
82 83 9.174166 CATATCATCAATATCAATCAAGCAGGA 57.826 33.333 0.00 0.00 0.00 3.86
83 84 8.406297 CCATATCATCAATATCAATCAAGCAGG 58.594 37.037 0.00 0.00 0.00 4.85
84 85 8.406297 CCCATATCATCAATATCAATCAAGCAG 58.594 37.037 0.00 0.00 0.00 4.24
85 86 7.891712 ACCCATATCATCAATATCAATCAAGCA 59.108 33.333 0.00 0.00 0.00 3.91
86 87 8.289939 ACCCATATCATCAATATCAATCAAGC 57.710 34.615 0.00 0.00 0.00 4.01
96 97 9.601810 ACTCTTGTACTACCCATATCATCAATA 57.398 33.333 0.00 0.00 0.00 1.90
97 98 8.497910 ACTCTTGTACTACCCATATCATCAAT 57.502 34.615 0.00 0.00 0.00 2.57
98 99 7.914427 ACTCTTGTACTACCCATATCATCAA 57.086 36.000 0.00 0.00 0.00 2.57
99 100 8.445588 TCTACTCTTGTACTACCCATATCATCA 58.554 37.037 0.00 0.00 0.00 3.07
100 101 8.865420 TCTACTCTTGTACTACCCATATCATC 57.135 38.462 0.00 0.00 0.00 2.92
101 102 9.469097 GATCTACTCTTGTACTACCCATATCAT 57.531 37.037 0.00 0.00 0.00 2.45
102 103 7.889073 GGATCTACTCTTGTACTACCCATATCA 59.111 40.741 0.00 0.00 0.00 2.15
103 104 7.889073 TGGATCTACTCTTGTACTACCCATATC 59.111 40.741 0.00 0.00 0.00 1.63
104 105 7.670559 GTGGATCTACTCTTGTACTACCCATAT 59.329 40.741 1.27 0.00 0.00 1.78
105 106 7.002879 GTGGATCTACTCTTGTACTACCCATA 58.997 42.308 1.27 0.00 0.00 2.74
106 107 5.834204 GTGGATCTACTCTTGTACTACCCAT 59.166 44.000 1.27 0.00 0.00 4.00
107 108 5.198965 GTGGATCTACTCTTGTACTACCCA 58.801 45.833 1.27 0.00 0.00 4.51
108 109 4.583907 GGTGGATCTACTCTTGTACTACCC 59.416 50.000 9.27 0.00 0.00 3.69
109 110 5.067544 GTGGTGGATCTACTCTTGTACTACC 59.932 48.000 9.27 0.00 30.12 3.18
110 111 5.220815 CGTGGTGGATCTACTCTTGTACTAC 60.221 48.000 9.27 0.00 0.00 2.73
111 112 4.880120 CGTGGTGGATCTACTCTTGTACTA 59.120 45.833 9.27 0.00 0.00 1.82
112 113 3.695060 CGTGGTGGATCTACTCTTGTACT 59.305 47.826 9.27 0.00 0.00 2.73
113 114 3.693085 TCGTGGTGGATCTACTCTTGTAC 59.307 47.826 9.27 0.00 0.00 2.90
114 115 3.945921 CTCGTGGTGGATCTACTCTTGTA 59.054 47.826 9.27 0.00 0.00 2.41
115 116 2.755655 CTCGTGGTGGATCTACTCTTGT 59.244 50.000 9.27 0.00 0.00 3.16
116 117 3.017442 TCTCGTGGTGGATCTACTCTTG 58.983 50.000 9.27 0.00 0.00 3.02
117 118 3.367646 TCTCGTGGTGGATCTACTCTT 57.632 47.619 9.27 0.00 0.00 2.85
118 119 3.117851 TGATCTCGTGGTGGATCTACTCT 60.118 47.826 9.27 0.00 39.09 3.24
119 120 3.215151 TGATCTCGTGGTGGATCTACTC 58.785 50.000 9.27 0.30 39.09 2.59
120 121 3.298686 TGATCTCGTGGTGGATCTACT 57.701 47.619 9.27 0.00 39.09 2.57
121 122 3.243569 CCTTGATCTCGTGGTGGATCTAC 60.244 52.174 0.00 0.00 39.09 2.59
122 123 2.959030 CCTTGATCTCGTGGTGGATCTA 59.041 50.000 0.00 0.00 39.09 1.98
123 124 1.759445 CCTTGATCTCGTGGTGGATCT 59.241 52.381 0.00 0.00 39.09 2.75
124 125 1.757118 TCCTTGATCTCGTGGTGGATC 59.243 52.381 0.00 0.00 38.87 3.36
125 126 1.759445 CTCCTTGATCTCGTGGTGGAT 59.241 52.381 0.00 0.00 0.00 3.41
126 127 1.186200 CTCCTTGATCTCGTGGTGGA 58.814 55.000 0.00 0.00 0.00 4.02
127 128 0.176680 CCTCCTTGATCTCGTGGTGG 59.823 60.000 0.00 0.00 0.00 4.61
128 129 0.460987 GCCTCCTTGATCTCGTGGTG 60.461 60.000 0.00 0.00 0.00 4.17
129 130 0.616111 AGCCTCCTTGATCTCGTGGT 60.616 55.000 0.00 0.00 0.00 4.16
130 131 1.403814 TAGCCTCCTTGATCTCGTGG 58.596 55.000 0.00 0.00 0.00 4.94
131 132 3.190874 GTTTAGCCTCCTTGATCTCGTG 58.809 50.000 0.00 0.00 0.00 4.35
132 133 2.168728 GGTTTAGCCTCCTTGATCTCGT 59.831 50.000 0.00 0.00 0.00 4.18
133 134 2.483889 GGGTTTAGCCTCCTTGATCTCG 60.484 54.545 0.00 0.00 37.43 4.04
134 135 2.774809 AGGGTTTAGCCTCCTTGATCTC 59.225 50.000 0.00 0.00 37.43 2.75
135 136 2.507471 CAGGGTTTAGCCTCCTTGATCT 59.493 50.000 0.00 0.00 37.43 2.75
136 137 2.422093 CCAGGGTTTAGCCTCCTTGATC 60.422 54.545 0.00 0.00 37.43 2.92
137 138 1.566231 CCAGGGTTTAGCCTCCTTGAT 59.434 52.381 0.00 0.00 37.43 2.57
138 139 0.991920 CCAGGGTTTAGCCTCCTTGA 59.008 55.000 0.00 0.00 37.43 3.02
139 140 0.991920 TCCAGGGTTTAGCCTCCTTG 59.008 55.000 0.00 0.00 37.43 3.61
140 141 1.636003 CTTCCAGGGTTTAGCCTCCTT 59.364 52.381 0.00 0.00 37.43 3.36
141 142 1.290134 CTTCCAGGGTTTAGCCTCCT 58.710 55.000 0.00 0.00 37.43 3.69
142 143 0.394488 GCTTCCAGGGTTTAGCCTCC 60.394 60.000 0.00 0.00 37.43 4.30
143 144 0.621082 AGCTTCCAGGGTTTAGCCTC 59.379 55.000 0.00 0.00 37.43 4.70
144 145 1.840635 CTAGCTTCCAGGGTTTAGCCT 59.159 52.381 0.00 0.00 37.43 4.58
145 146 1.747552 GCTAGCTTCCAGGGTTTAGCC 60.748 57.143 7.70 0.00 34.19 3.93
146 147 1.669604 GCTAGCTTCCAGGGTTTAGC 58.330 55.000 7.70 0.00 0.00 3.09
147 148 1.840635 AGGCTAGCTTCCAGGGTTTAG 59.159 52.381 15.72 0.00 0.00 1.85
148 149 1.966845 AGGCTAGCTTCCAGGGTTTA 58.033 50.000 15.72 0.00 0.00 2.01
149 150 1.966845 TAGGCTAGCTTCCAGGGTTT 58.033 50.000 15.72 0.00 0.00 3.27
150 151 1.771255 CATAGGCTAGCTTCCAGGGTT 59.229 52.381 15.72 0.00 0.00 4.11
151 152 1.428869 CATAGGCTAGCTTCCAGGGT 58.571 55.000 15.72 0.00 0.00 4.34
152 153 0.689623 CCATAGGCTAGCTTCCAGGG 59.310 60.000 15.72 0.00 0.00 4.45
153 154 1.428869 ACCATAGGCTAGCTTCCAGG 58.571 55.000 15.72 12.08 0.00 4.45
154 155 3.834813 TCATACCATAGGCTAGCTTCCAG 59.165 47.826 15.72 3.93 0.00 3.86
155 156 3.856900 TCATACCATAGGCTAGCTTCCA 58.143 45.455 15.72 0.00 0.00 3.53
156 157 5.181748 CAATCATACCATAGGCTAGCTTCC 58.818 45.833 15.72 0.00 0.00 3.46
157 158 5.799213 ACAATCATACCATAGGCTAGCTTC 58.201 41.667 15.72 0.00 0.00 3.86
158 159 5.832539 ACAATCATACCATAGGCTAGCTT 57.167 39.130 15.72 10.11 0.00 3.74
159 160 5.072329 ACAACAATCATACCATAGGCTAGCT 59.928 40.000 15.72 3.22 0.00 3.32
160 161 5.308825 ACAACAATCATACCATAGGCTAGC 58.691 41.667 6.04 6.04 0.00 3.42
161 162 6.146184 CGAACAACAATCATACCATAGGCTAG 59.854 42.308 0.00 0.00 0.00 3.42
162 163 5.989168 CGAACAACAATCATACCATAGGCTA 59.011 40.000 0.00 0.00 0.00 3.93
163 164 4.816385 CGAACAACAATCATACCATAGGCT 59.184 41.667 0.00 0.00 0.00 4.58
164 165 4.574828 ACGAACAACAATCATACCATAGGC 59.425 41.667 0.00 0.00 0.00 3.93
165 166 5.236478 GGACGAACAACAATCATACCATAGG 59.764 44.000 0.00 0.00 0.00 2.57
166 167 6.049149 AGGACGAACAACAATCATACCATAG 58.951 40.000 0.00 0.00 0.00 2.23
167 168 5.984725 AGGACGAACAACAATCATACCATA 58.015 37.500 0.00 0.00 0.00 2.74
168 169 4.843728 AGGACGAACAACAATCATACCAT 58.156 39.130 0.00 0.00 0.00 3.55
169 170 4.280436 AGGACGAACAACAATCATACCA 57.720 40.909 0.00 0.00 0.00 3.25
170 171 4.266976 CGTAGGACGAACAACAATCATACC 59.733 45.833 0.00 0.00 46.05 2.73
171 172 5.371344 CGTAGGACGAACAACAATCATAC 57.629 43.478 0.00 0.00 46.05 2.39
193 194 8.854117 TCTATATAAACCGGAGAGTTTTAGTCC 58.146 37.037 9.46 0.00 40.38 3.85
194 195 9.676195 GTCTATATAAACCGGAGAGTTTTAGTC 57.324 37.037 9.46 0.00 40.38 2.59
195 196 9.193806 TGTCTATATAAACCGGAGAGTTTTAGT 57.806 33.333 9.46 0.00 40.38 2.24
196 197 9.460906 GTGTCTATATAAACCGGAGAGTTTTAG 57.539 37.037 9.46 1.01 40.38 1.85
197 198 8.416329 GGTGTCTATATAAACCGGAGAGTTTTA 58.584 37.037 9.46 1.94 40.38 1.52
198 199 7.270779 GGTGTCTATATAAACCGGAGAGTTTT 58.729 38.462 9.46 0.00 40.38 2.43
199 200 6.814043 GGTGTCTATATAAACCGGAGAGTTT 58.186 40.000 9.46 0.00 42.47 2.66
200 201 6.402456 GGTGTCTATATAAACCGGAGAGTT 57.598 41.667 9.46 0.00 0.00 3.01
208 209 4.220163 CCCTCTCCGGTGTCTATATAAACC 59.780 50.000 0.00 0.68 0.00 3.27
209 210 4.321824 GCCCTCTCCGGTGTCTATATAAAC 60.322 50.000 0.00 0.00 0.00 2.01
210 211 3.830755 GCCCTCTCCGGTGTCTATATAAA 59.169 47.826 0.00 0.00 0.00 1.40
211 212 3.075582 AGCCCTCTCCGGTGTCTATATAA 59.924 47.826 0.00 0.00 0.00 0.98
212 213 2.648304 AGCCCTCTCCGGTGTCTATATA 59.352 50.000 0.00 0.00 0.00 0.86
213 214 1.429687 AGCCCTCTCCGGTGTCTATAT 59.570 52.381 0.00 0.00 0.00 0.86
214 215 0.851469 AGCCCTCTCCGGTGTCTATA 59.149 55.000 0.00 0.00 0.00 1.31
215 216 0.851469 TAGCCCTCTCCGGTGTCTAT 59.149 55.000 0.00 0.00 0.00 1.98
216 217 0.183014 CTAGCCCTCTCCGGTGTCTA 59.817 60.000 0.00 0.05 0.00 2.59
217 218 1.076632 CTAGCCCTCTCCGGTGTCT 60.077 63.158 0.00 0.00 0.00 3.41
218 219 2.128507 CCTAGCCCTCTCCGGTGTC 61.129 68.421 0.00 0.00 0.00 3.67
219 220 2.042843 CCTAGCCCTCTCCGGTGT 60.043 66.667 0.00 0.00 0.00 4.16
220 221 2.840102 CCCTAGCCCTCTCCGGTG 60.840 72.222 0.00 0.00 0.00 4.94
221 222 1.587522 TAACCCTAGCCCTCTCCGGT 61.588 60.000 0.00 0.00 0.00 5.28
222 223 1.114119 GTAACCCTAGCCCTCTCCGG 61.114 65.000 0.00 0.00 0.00 5.14
223 224 0.396695 TGTAACCCTAGCCCTCTCCG 60.397 60.000 0.00 0.00 0.00 4.63
224 225 1.121378 GTGTAACCCTAGCCCTCTCC 58.879 60.000 0.00 0.00 0.00 3.71
225 226 1.757699 CTGTGTAACCCTAGCCCTCTC 59.242 57.143 0.00 0.00 34.36 3.20
226 227 1.361543 TCTGTGTAACCCTAGCCCTCT 59.638 52.381 0.00 0.00 34.36 3.69
227 228 1.757699 CTCTGTGTAACCCTAGCCCTC 59.242 57.143 0.00 0.00 34.36 4.30
228 229 1.078989 ACTCTGTGTAACCCTAGCCCT 59.921 52.381 0.00 0.00 34.36 5.19
229 230 1.481363 GACTCTGTGTAACCCTAGCCC 59.519 57.143 0.00 0.00 34.36 5.19
230 231 1.134560 CGACTCTGTGTAACCCTAGCC 59.865 57.143 0.00 0.00 34.36 3.93
231 232 1.134560 CCGACTCTGTGTAACCCTAGC 59.865 57.143 0.00 0.00 34.36 3.42
232 233 2.444421 ACCGACTCTGTGTAACCCTAG 58.556 52.381 0.00 0.00 34.36 3.02
233 234 2.592102 ACCGACTCTGTGTAACCCTA 57.408 50.000 0.00 0.00 34.36 3.53
234 235 1.713297 AACCGACTCTGTGTAACCCT 58.287 50.000 0.00 0.00 34.36 4.34
235 236 2.297033 TGTAACCGACTCTGTGTAACCC 59.703 50.000 0.00 0.00 34.36 4.11
236 237 3.648339 TGTAACCGACTCTGTGTAACC 57.352 47.619 0.00 0.00 34.36 2.85
237 238 4.387862 CCATTGTAACCGACTCTGTGTAAC 59.612 45.833 0.00 0.00 37.35 2.50
238 239 4.039488 ACCATTGTAACCGACTCTGTGTAA 59.961 41.667 0.00 0.00 0.00 2.41
239 240 3.575256 ACCATTGTAACCGACTCTGTGTA 59.425 43.478 0.00 0.00 0.00 2.90
240 241 2.367567 ACCATTGTAACCGACTCTGTGT 59.632 45.455 0.00 0.00 0.00 3.72
241 242 3.040147 ACCATTGTAACCGACTCTGTG 57.960 47.619 0.00 0.00 0.00 3.66
242 243 3.194968 CCTACCATTGTAACCGACTCTGT 59.805 47.826 0.00 0.00 0.00 3.41
243 244 3.446161 TCCTACCATTGTAACCGACTCTG 59.554 47.826 0.00 0.00 0.00 3.35
244 245 3.700038 CTCCTACCATTGTAACCGACTCT 59.300 47.826 0.00 0.00 0.00 3.24
245 246 3.698040 TCTCCTACCATTGTAACCGACTC 59.302 47.826 0.00 0.00 0.00 3.36
246 247 3.705051 TCTCCTACCATTGTAACCGACT 58.295 45.455 0.00 0.00 0.00 4.18
247 248 4.341520 AGATCTCCTACCATTGTAACCGAC 59.658 45.833 0.00 0.00 0.00 4.79
248 249 4.543689 AGATCTCCTACCATTGTAACCGA 58.456 43.478 0.00 0.00 0.00 4.69
249 250 4.939052 AGATCTCCTACCATTGTAACCG 57.061 45.455 0.00 0.00 0.00 4.44
250 251 6.726490 TGTAGATCTCCTACCATTGTAACC 57.274 41.667 0.00 0.00 45.60 2.85
252 253 9.256228 GGATATGTAGATCTCCTACCATTGTAA 57.744 37.037 0.00 0.00 45.60 2.41
253 254 7.556635 CGGATATGTAGATCTCCTACCATTGTA 59.443 40.741 0.00 0.00 45.60 2.41
254 255 6.378564 CGGATATGTAGATCTCCTACCATTGT 59.621 42.308 0.00 0.00 45.60 2.71
255 256 6.378564 ACGGATATGTAGATCTCCTACCATTG 59.621 42.308 0.00 0.00 45.60 2.82
256 257 6.494952 ACGGATATGTAGATCTCCTACCATT 58.505 40.000 0.00 0.00 45.60 3.16
257 258 6.080969 ACGGATATGTAGATCTCCTACCAT 57.919 41.667 0.00 0.00 45.60 3.55
258 259 5.516059 ACGGATATGTAGATCTCCTACCA 57.484 43.478 0.00 0.00 45.60 3.25
259 260 6.424509 CGATACGGATATGTAGATCTCCTACC 59.575 46.154 0.00 0.00 45.60 3.18
260 261 6.073657 GCGATACGGATATGTAGATCTCCTAC 60.074 46.154 0.00 0.00 46.21 3.18
261 262 5.990386 GCGATACGGATATGTAGATCTCCTA 59.010 44.000 0.00 0.00 0.00 2.94
262 263 4.817464 GCGATACGGATATGTAGATCTCCT 59.183 45.833 0.00 0.00 0.00 3.69
263 264 4.023878 GGCGATACGGATATGTAGATCTCC 60.024 50.000 0.00 0.00 0.00 3.71
264 265 4.575236 TGGCGATACGGATATGTAGATCTC 59.425 45.833 0.00 0.00 0.00 2.75
265 266 4.524053 TGGCGATACGGATATGTAGATCT 58.476 43.478 0.00 0.00 0.00 2.75
266 267 4.895224 TGGCGATACGGATATGTAGATC 57.105 45.455 0.00 0.00 0.00 2.75
267 268 4.440250 GCTTGGCGATACGGATATGTAGAT 60.440 45.833 0.00 0.00 0.00 1.98
268 269 3.119602 GCTTGGCGATACGGATATGTAGA 60.120 47.826 0.00 0.00 0.00 2.59
269 270 3.119459 AGCTTGGCGATACGGATATGTAG 60.119 47.826 0.00 0.00 0.00 2.74
270 271 2.823747 AGCTTGGCGATACGGATATGTA 59.176 45.455 0.00 0.00 0.00 2.29
271 272 1.618837 AGCTTGGCGATACGGATATGT 59.381 47.619 0.00 0.00 0.00 2.29
272 273 2.370281 AGCTTGGCGATACGGATATG 57.630 50.000 0.00 0.00 0.00 1.78
273 274 2.688507 CAAGCTTGGCGATACGGATAT 58.311 47.619 19.14 0.00 0.00 1.63
274 275 1.872237 GCAAGCTTGGCGATACGGATA 60.872 52.381 27.10 0.00 0.00 2.59
275 276 1.160329 GCAAGCTTGGCGATACGGAT 61.160 55.000 27.10 0.00 0.00 4.18
276 277 1.813753 GCAAGCTTGGCGATACGGA 60.814 57.895 27.10 0.00 0.00 4.69
277 278 2.709475 GCAAGCTTGGCGATACGG 59.291 61.111 27.10 0.00 0.00 4.02
278 279 2.709475 GGCAAGCTTGGCGATACG 59.291 61.111 33.68 4.49 43.97 3.06
285 286 2.956987 CGTGGAAGGCAAGCTTGG 59.043 61.111 27.10 9.80 0.00 3.61
294 295 0.537371 ACTTTCCTTGGCGTGGAAGG 60.537 55.000 15.33 15.33 43.48 3.46
295 296 0.875059 GACTTTCCTTGGCGTGGAAG 59.125 55.000 10.20 8.04 43.48 3.46
296 297 0.536460 GGACTTTCCTTGGCGTGGAA 60.536 55.000 6.88 6.88 41.33 3.53
297 298 1.072505 GGACTTTCCTTGGCGTGGA 59.927 57.895 0.00 0.00 32.53 4.02
298 299 1.971695 GGGACTTTCCTTGGCGTGG 60.972 63.158 0.00 0.00 36.57 4.94
299 300 0.609131 ATGGGACTTTCCTTGGCGTG 60.609 55.000 0.00 0.00 36.57 5.34
300 301 0.322546 GATGGGACTTTCCTTGGCGT 60.323 55.000 0.00 0.00 36.57 5.68
301 302 1.032114 GGATGGGACTTTCCTTGGCG 61.032 60.000 0.00 0.00 36.57 5.69
302 303 0.039618 TGGATGGGACTTTCCTTGGC 59.960 55.000 0.00 0.00 36.57 4.52
303 304 1.635487 TCTGGATGGGACTTTCCTTGG 59.365 52.381 0.00 0.00 36.57 3.61
304 305 2.040278 TGTCTGGATGGGACTTTCCTTG 59.960 50.000 0.00 0.00 36.57 3.61
305 306 2.040412 GTGTCTGGATGGGACTTTCCTT 59.960 50.000 0.00 0.00 36.57 3.36
306 307 1.630878 GTGTCTGGATGGGACTTTCCT 59.369 52.381 0.00 0.00 36.57 3.36
307 308 1.351017 TGTGTCTGGATGGGACTTTCC 59.649 52.381 0.00 0.00 35.04 3.13
308 309 2.616510 CCTGTGTCTGGATGGGACTTTC 60.617 54.545 0.00 0.00 35.04 2.62
309 310 1.352352 CCTGTGTCTGGATGGGACTTT 59.648 52.381 0.00 0.00 35.04 2.66
310 311 0.987294 CCTGTGTCTGGATGGGACTT 59.013 55.000 0.00 0.00 35.04 3.01
311 312 0.117140 TCCTGTGTCTGGATGGGACT 59.883 55.000 0.00 0.00 35.04 3.85
312 313 0.250513 GTCCTGTGTCTGGATGGGAC 59.749 60.000 0.00 0.00 34.19 4.46
313 314 1.257750 CGTCCTGTGTCTGGATGGGA 61.258 60.000 6.90 0.00 35.66 4.37
314 315 1.219124 CGTCCTGTGTCTGGATGGG 59.781 63.158 6.90 0.00 35.66 4.00
315 316 0.608130 TTCGTCCTGTGTCTGGATGG 59.392 55.000 12.54 3.86 38.48 3.51
316 317 1.273606 ACTTCGTCCTGTGTCTGGATG 59.726 52.381 8.07 8.07 39.04 3.51
317 318 1.546476 GACTTCGTCCTGTGTCTGGAT 59.454 52.381 0.00 0.00 34.19 3.41
318 319 0.959553 GACTTCGTCCTGTGTCTGGA 59.040 55.000 0.00 0.00 0.00 3.86
319 320 0.962489 AGACTTCGTCCTGTGTCTGG 59.038 55.000 0.00 0.00 38.22 3.86
320 321 2.034685 TGAAGACTTCGTCCTGTGTCTG 59.965 50.000 10.56 0.00 39.39 3.51
321 322 2.307768 TGAAGACTTCGTCCTGTGTCT 58.692 47.619 10.56 0.00 40.95 3.41
322 323 2.795175 TGAAGACTTCGTCCTGTGTC 57.205 50.000 10.56 0.00 32.18 3.67
323 324 3.322254 AGATTGAAGACTTCGTCCTGTGT 59.678 43.478 10.56 0.00 32.18 3.72
324 325 3.919216 AGATTGAAGACTTCGTCCTGTG 58.081 45.455 10.56 0.00 32.18 3.66
325 326 4.202264 ACAAGATTGAAGACTTCGTCCTGT 60.202 41.667 14.29 14.29 32.18 4.00
326 327 4.310769 ACAAGATTGAAGACTTCGTCCTG 58.689 43.478 10.56 12.28 32.18 3.86
327 328 4.608948 ACAAGATTGAAGACTTCGTCCT 57.391 40.909 10.56 4.33 32.18 3.85
328 329 6.334202 AGATACAAGATTGAAGACTTCGTCC 58.666 40.000 10.56 2.18 32.18 4.79
329 330 7.542477 TGAAGATACAAGATTGAAGACTTCGTC 59.458 37.037 10.56 10.67 34.37 4.20
330 331 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
331 332 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
338 339 9.102757 GCAAGACTATGAAGATACAAGATTGAA 57.897 33.333 0.00 0.00 0.00 2.69
339 340 8.260114 TGCAAGACTATGAAGATACAAGATTGA 58.740 33.333 0.00 0.00 0.00 2.57
340 341 8.429493 TGCAAGACTATGAAGATACAAGATTG 57.571 34.615 0.00 0.00 0.00 2.67
341 342 8.263640 ACTGCAAGACTATGAAGATACAAGATT 58.736 33.333 0.00 0.00 37.43 2.40
342 343 7.790027 ACTGCAAGACTATGAAGATACAAGAT 58.210 34.615 0.00 0.00 37.43 2.40
343 344 7.175347 ACTGCAAGACTATGAAGATACAAGA 57.825 36.000 0.00 0.00 37.43 3.02
344 345 7.253917 CGAACTGCAAGACTATGAAGATACAAG 60.254 40.741 0.00 0.00 37.43 3.16
345 346 6.531594 CGAACTGCAAGACTATGAAGATACAA 59.468 38.462 0.00 0.00 37.43 2.41
346 347 6.036470 CGAACTGCAAGACTATGAAGATACA 58.964 40.000 0.00 0.00 37.43 2.29
347 348 5.460419 CCGAACTGCAAGACTATGAAGATAC 59.540 44.000 0.00 0.00 37.43 2.24
348 349 5.592054 CCGAACTGCAAGACTATGAAGATA 58.408 41.667 0.00 0.00 37.43 1.98
349 350 4.437239 CCGAACTGCAAGACTATGAAGAT 58.563 43.478 0.00 0.00 37.43 2.40
350 351 3.849911 CCGAACTGCAAGACTATGAAGA 58.150 45.455 0.00 0.00 37.43 2.87
351 352 2.349886 GCCGAACTGCAAGACTATGAAG 59.650 50.000 0.00 0.00 37.43 3.02
352 353 2.346803 GCCGAACTGCAAGACTATGAA 58.653 47.619 0.00 0.00 37.43 2.57
353 354 1.735700 CGCCGAACTGCAAGACTATGA 60.736 52.381 0.00 0.00 37.43 2.15
354 355 0.647410 CGCCGAACTGCAAGACTATG 59.353 55.000 0.00 0.00 37.43 2.23
355 356 0.530744 TCGCCGAACTGCAAGACTAT 59.469 50.000 0.00 0.00 37.43 2.12
356 357 0.315886 TTCGCCGAACTGCAAGACTA 59.684 50.000 0.00 0.00 37.43 2.59
357 358 0.320771 ATTCGCCGAACTGCAAGACT 60.321 50.000 0.00 0.00 37.43 3.24
358 359 0.179215 CATTCGCCGAACTGCAAGAC 60.179 55.000 0.00 0.00 37.43 3.01
359 360 0.320334 TCATTCGCCGAACTGCAAGA 60.320 50.000 0.00 0.00 37.43 3.02
360 361 0.729116 ATCATTCGCCGAACTGCAAG 59.271 50.000 0.00 0.00 42.29 4.01
361 362 0.447406 CATCATTCGCCGAACTGCAA 59.553 50.000 0.00 0.00 0.00 4.08
362 363 0.390998 TCATCATTCGCCGAACTGCA 60.391 50.000 0.00 0.00 0.00 4.41
363 364 0.940126 ATCATCATTCGCCGAACTGC 59.060 50.000 0.00 0.00 0.00 4.40
364 365 3.384668 ACTATCATCATTCGCCGAACTG 58.615 45.455 0.00 2.33 0.00 3.16
365 366 3.735237 ACTATCATCATTCGCCGAACT 57.265 42.857 0.00 0.00 0.00 3.01
366 367 3.121328 CGAACTATCATCATTCGCCGAAC 60.121 47.826 0.00 0.00 38.82 3.95
367 368 3.049912 CGAACTATCATCATTCGCCGAA 58.950 45.455 0.33 0.33 38.82 4.30
368 369 2.607038 CCGAACTATCATCATTCGCCGA 60.607 50.000 0.23 0.00 42.96 5.54
369 370 1.721389 CCGAACTATCATCATTCGCCG 59.279 52.381 0.23 0.00 42.96 6.46
370 371 1.461127 GCCGAACTATCATCATTCGCC 59.539 52.381 0.23 0.00 42.96 5.54
371 372 2.408050 AGCCGAACTATCATCATTCGC 58.592 47.619 0.23 0.00 42.96 4.70
388 389 2.668106 TAGGGGGTGTCCGGATAGCC 62.668 65.000 34.24 34.24 39.05 3.93
389 390 1.152398 TAGGGGGTGTCCGGATAGC 60.152 63.158 20.91 20.91 36.01 2.97
390 391 0.187851 ACTAGGGGGTGTCCGGATAG 59.812 60.000 7.81 5.89 36.01 2.08
391 392 0.186873 GACTAGGGGGTGTCCGGATA 59.813 60.000 7.81 0.10 36.01 2.59
392 393 1.075450 GACTAGGGGGTGTCCGGAT 60.075 63.158 7.81 0.00 36.01 4.18
393 394 2.361771 GACTAGGGGGTGTCCGGA 59.638 66.667 0.00 0.00 36.01 5.14
394 395 2.762875 GGACTAGGGGGTGTCCGG 60.763 72.222 0.00 0.00 42.51 5.14
397 398 4.051932 CCTGGACTAGGGGGTGTC 57.948 66.667 0.00 0.00 43.33 3.67
404 405 0.394488 TGAGCGAGTCCTGGACTAGG 60.394 60.000 30.04 24.15 43.53 3.02
405 406 1.021202 CTGAGCGAGTCCTGGACTAG 58.979 60.000 28.41 27.48 43.53 2.57
406 407 1.032657 GCTGAGCGAGTCCTGGACTA 61.033 60.000 28.41 12.33 43.53 2.59
407 408 2.347322 GCTGAGCGAGTCCTGGACT 61.347 63.158 28.70 28.70 46.42 3.85
408 409 2.183046 GCTGAGCGAGTCCTGGAC 59.817 66.667 19.20 19.20 0.00 4.02
409 410 2.036414 AGCTGAGCGAGTCCTGGA 59.964 61.111 0.00 0.00 0.00 3.86
410 411 2.493973 GAGCTGAGCGAGTCCTGG 59.506 66.667 0.00 0.00 0.00 4.45
411 412 2.493973 GGAGCTGAGCGAGTCCTG 59.506 66.667 0.00 0.00 0.00 3.86
412 413 2.757917 GGGAGCTGAGCGAGTCCT 60.758 66.667 10.52 0.00 0.00 3.85
413 414 1.038130 TAAGGGAGCTGAGCGAGTCC 61.038 60.000 0.00 0.00 0.00 3.85
414 415 0.818296 TTAAGGGAGCTGAGCGAGTC 59.182 55.000 0.00 0.00 0.00 3.36
415 416 1.137872 CATTAAGGGAGCTGAGCGAGT 59.862 52.381 0.00 0.00 0.00 4.18
416 417 1.137872 ACATTAAGGGAGCTGAGCGAG 59.862 52.381 0.00 0.00 0.00 5.03
417 418 1.195115 ACATTAAGGGAGCTGAGCGA 58.805 50.000 0.00 0.00 0.00 4.93
418 419 2.890808 TACATTAAGGGAGCTGAGCG 57.109 50.000 0.00 0.00 0.00 5.03
419 420 3.812053 CACATACATTAAGGGAGCTGAGC 59.188 47.826 0.00 0.00 0.00 4.26
420 421 3.812053 GCACATACATTAAGGGAGCTGAG 59.188 47.826 0.00 0.00 0.00 3.35
421 422 3.433598 GGCACATACATTAAGGGAGCTGA 60.434 47.826 0.00 0.00 0.00 4.26
422 423 2.880890 GGCACATACATTAAGGGAGCTG 59.119 50.000 0.00 0.00 0.00 4.24
423 424 2.509548 TGGCACATACATTAAGGGAGCT 59.490 45.455 0.00 0.00 0.00 4.09
521 523 4.330620 CCACGTTACTTATAACCGCACAAT 59.669 41.667 0.00 0.00 37.94 2.71
524 526 2.029606 GCCACGTTACTTATAACCGCAC 59.970 50.000 0.00 0.00 37.94 5.34
543 545 5.249420 CCTATTCTAGAAATTAGGCTGGCC 58.751 45.833 15.92 3.00 0.00 5.36
633 635 0.535335 TTCAGTTAGAGGCGGCGATT 59.465 50.000 12.98 0.00 0.00 3.34
774 776 1.060163 GTCCCTAGGCCCCATTGCTA 61.060 60.000 2.05 0.00 0.00 3.49
821 823 3.242291 GCCCATAGTAGGCCGGCT 61.242 66.667 28.56 15.07 45.16 5.52
857 859 2.303022 AGTTTGTGGATCACGGTCTCAT 59.697 45.455 0.00 0.00 37.14 2.90
997 999 0.908910 TCGCCAAAAGGCCTCATCTA 59.091 50.000 5.23 0.00 0.00 1.98
1094 1098 3.549433 TTGGAGGGCGGGGAGTGTA 62.549 63.158 0.00 0.00 0.00 2.90
1190 1194 1.040646 GATGTACCTCGAGATGGCCA 58.959 55.000 15.71 8.56 0.00 5.36
1204 1208 3.007074 TGTTGCCTTTAGGTCGTGATGTA 59.993 43.478 0.00 0.00 37.57 2.29
1218 1222 3.936203 TCTCGCCGGTGTTGCCTT 61.936 61.111 16.01 0.00 34.25 4.35
1687 1694 6.489603 ACCCCTGTCAATGTATGTTTGATTA 58.510 36.000 0.00 0.00 35.68 1.75
1713 1720 4.524328 CCTGCTTCCTATCTTTTTGTTGGT 59.476 41.667 0.00 0.00 0.00 3.67
1726 1733 0.338467 TCACTAGGGCCTGCTTCCTA 59.662 55.000 18.53 0.00 34.75 2.94
1732 1739 2.128771 TCAAATTCACTAGGGCCTGC 57.871 50.000 18.53 0.00 0.00 4.85
1733 1740 4.763793 CCATATCAAATTCACTAGGGCCTG 59.236 45.833 18.53 8.95 0.00 4.85
2118 2128 9.131791 GAGGGAATGGAATCTAGACTATAGATC 57.868 40.741 6.78 0.59 33.49 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.