Multiple sequence alignment - TraesCS6B01G130900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G130900 chr6B 100.000 6820 0 0 1 6820 127603499 127610318 0.000000e+00 12595
1 TraesCS6B01G130900 chr6B 93.333 165 11 0 2311 2475 232734816 232734980 1.900000e-60 244
2 TraesCS6B01G130900 chr6A 93.535 2676 93 21 2478 5107 71538366 71541007 0.000000e+00 3910
3 TraesCS6B01G130900 chr6A 93.407 2351 85 22 1 2315 71536052 71538368 0.000000e+00 3419
4 TraesCS6B01G130900 chr6A 90.225 1422 84 22 5257 6656 71540992 71542380 0.000000e+00 1805
5 TraesCS6B01G130900 chr6A 90.341 176 13 2 6643 6818 71543071 71543242 1.910000e-55 228
6 TraesCS6B01G130900 chr6D 93.792 1933 95 15 3178 5107 56911376 56913286 0.000000e+00 2881
7 TraesCS6B01G130900 chr6D 89.908 1744 100 29 414 2120 56908532 56910236 0.000000e+00 2176
8 TraesCS6B01G130900 chr6D 89.571 1304 84 26 5257 6532 56913271 56914550 0.000000e+00 1607
9 TraesCS6B01G130900 chr6D 88.056 720 56 10 2479 3172 56910395 56911110 0.000000e+00 826
10 TraesCS6B01G130900 chr6D 84.471 425 32 21 19 417 56908007 56908423 8.290000e-104 388
11 TraesCS6B01G130900 chr6D 92.814 167 11 1 2309 2475 431160663 431160828 2.460000e-59 241
12 TraesCS6B01G130900 chr6D 93.548 155 8 2 5107 5261 450832117 450831965 5.320000e-56 230
13 TraesCS6B01G130900 chr6D 93.151 146 6 1 6655 6796 56915531 56915676 1.930000e-50 211
14 TraesCS6B01G130900 chr6D 90.123 81 6 2 2080 2159 56910264 56910343 3.360000e-18 104
15 TraesCS6B01G130900 chr2D 85.973 1048 112 26 892 1923 317947877 317946849 0.000000e+00 1088
16 TraesCS6B01G130900 chr2D 86.029 544 61 9 3385 3924 317945651 317945119 2.760000e-158 569
17 TraesCS6B01G130900 chr2D 77.763 733 104 35 2478 3187 317946511 317945815 4.960000e-106 396
18 TraesCS6B01G130900 chr2D 90.795 239 20 2 4104 4341 317945097 317944860 1.100000e-82 318
19 TraesCS6B01G130900 chr2D 94.839 155 6 2 5107 5261 215831967 215831815 2.460000e-59 241
20 TraesCS6B01G130900 chr2D 80.488 328 40 16 5487 5812 317944015 317943710 5.320000e-56 230
21 TraesCS6B01G130900 chr2A 84.375 1056 121 24 883 1923 414989588 414990614 0.000000e+00 996
22 TraesCS6B01G130900 chr2A 86.029 544 61 11 3385 3924 414992374 414992906 2.760000e-158 569
23 TraesCS6B01G130900 chr2A 84.252 381 46 9 2478 2848 414990949 414991325 6.500000e-95 359
24 TraesCS6B01G130900 chr2A 91.949 236 17 2 4104 4338 414992928 414993162 5.100000e-86 329
25 TraesCS6B01G130900 chr2A 90.000 180 17 1 2307 2486 184561322 184561144 1.480000e-56 231
26 TraesCS6B01G130900 chr2A 80.368 326 43 14 5487 5812 414993902 414994206 1.910000e-55 228
27 TraesCS6B01G130900 chr2B 87.776 769 82 9 883 1642 385568378 385567613 0.000000e+00 889
28 TraesCS6B01G130900 chr2B 86.239 545 58 13 3385 3924 385565516 385564984 5.930000e-160 575
29 TraesCS6B01G130900 chr2B 77.455 723 101 34 2478 3176 385566775 385566091 6.460000e-100 375
30 TraesCS6B01G130900 chr2B 91.632 239 18 2 4104 4341 385564962 385564725 5.100000e-86 329
31 TraesCS6B01G130900 chr2B 81.288 326 41 14 5487 5812 385564000 385563695 5.280000e-61 246
32 TraesCS6B01G130900 chr7A 93.370 181 9 3 2295 2475 503424512 503424689 1.460000e-66 265
33 TraesCS6B01G130900 chr7A 91.279 172 11 4 5101 5271 428822332 428822164 1.480000e-56 231
34 TraesCS6B01G130900 chr5D 94.444 162 9 0 2315 2476 320884259 320884098 4.080000e-62 250
35 TraesCS6B01G130900 chr5D 94.194 155 7 2 5107 5261 257502288 257502136 1.140000e-57 235
36 TraesCS6B01G130900 chr4A 92.899 169 12 0 2308 2476 517406465 517406633 5.280000e-61 246
37 TraesCS6B01G130900 chr4A 93.827 162 10 0 2314 2475 150653313 150653474 1.900000e-60 244
38 TraesCS6B01G130900 chr3B 78.851 435 40 18 609 1001 795255483 795255059 5.280000e-61 246
39 TraesCS6B01G130900 chr3D 92.814 167 12 0 2309 2475 87925995 87926161 6.830000e-60 243
40 TraesCS6B01G130900 chr3D 94.304 158 7 2 5104 5261 26165692 26165847 2.460000e-59 241
41 TraesCS6B01G130900 chr7D 94.231 156 7 2 5107 5262 617790592 617790745 3.180000e-58 237
42 TraesCS6B01G130900 chr5B 94.194 155 7 2 5107 5261 291787006 291786854 1.140000e-57 235
43 TraesCS6B01G130900 chr5B 93.590 156 9 1 5107 5262 601414326 601414172 1.480000e-56 231
44 TraesCS6B01G130900 chr1D 93.590 156 8 2 5106 5261 418199585 418199432 1.480000e-56 231
45 TraesCS6B01G130900 chr1A 90.000 180 17 1 2296 2475 566480991 566481169 1.480000e-56 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G130900 chr6B 127603499 127610318 6819 False 12595.000000 12595 100.000000 1 6820 1 chr6B.!!$F1 6819
1 TraesCS6B01G130900 chr6A 71536052 71543242 7190 False 2340.500000 3910 91.877000 1 6818 4 chr6A.!!$F1 6817
2 TraesCS6B01G130900 chr6D 56908007 56915676 7669 False 1170.428571 2881 89.867429 19 6796 7 chr6D.!!$F2 6777
3 TraesCS6B01G130900 chr2D 317943710 317947877 4167 True 520.200000 1088 84.209600 892 5812 5 chr2D.!!$R2 4920
4 TraesCS6B01G130900 chr2A 414989588 414994206 4618 False 496.200000 996 85.394600 883 5812 5 chr2A.!!$F1 4929
5 TraesCS6B01G130900 chr2B 385563695 385568378 4683 True 482.800000 889 84.878000 883 5812 5 chr2B.!!$R1 4929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 674 0.669077 ATCTGTATCTCCGTGTCCGC 59.331 55.000 0.0 0.0 0.00 5.54 F
1236 1433 0.033503 TCGAGACCCATGTCCAGCTA 60.034 55.000 0.0 0.0 42.81 3.32 F
1981 2303 0.187361 TTGGTTTAGCCCTGCCTGTT 59.813 50.000 0.0 0.0 36.04 3.16 F
3616 5029 1.067516 GCTTGTGCTTTCAGCCTTTCA 59.932 47.619 0.0 0.0 41.51 2.69 F
5104 6598 0.453793 CGGTTTCAAGTGTGTTGCCA 59.546 50.000 0.0 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1719 0.754957 TGGCCACCACCAAACTCAAG 60.755 55.000 0.00 0.00 36.55 3.02 R
2523 3042 1.269998 GCCGACCAGAATAGCGATACT 59.730 52.381 0.00 0.00 0.00 2.12 R
3778 5191 2.426738 TGGAAGCTCGGGCATTAAATTG 59.573 45.455 11.40 0.00 41.70 2.32 R
5160 6654 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53 R
6386 7975 0.106769 TTTTCAGCTGTCAGCCCACA 60.107 50.000 21.32 0.68 43.77 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.423898 CGCCACAGTATCTCCCCGT 61.424 63.158 0.00 0.00 0.00 5.28
134 135 2.630317 GCGCCGCTGAATCATCTG 59.370 61.111 0.00 0.00 0.00 2.90
184 188 4.148825 CCCACGCCCTCTTCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
393 425 1.933853 GGCATCGGTCACACATCTTAC 59.066 52.381 0.00 0.00 0.00 2.34
396 428 3.435327 GCATCGGTCACACATCTTACAAA 59.565 43.478 0.00 0.00 0.00 2.83
397 429 4.083537 GCATCGGTCACACATCTTACAAAA 60.084 41.667 0.00 0.00 0.00 2.44
495 639 6.899114 CGTAAGGTTGTTTCTAGAAATTGCT 58.101 36.000 20.41 6.89 32.36 3.91
505 649 7.769044 TGTTTCTAGAAATTGCTGTATCCCTAC 59.231 37.037 20.41 3.84 32.36 3.18
506 650 6.420913 TCTAGAAATTGCTGTATCCCTACC 57.579 41.667 0.00 0.00 0.00 3.18
507 651 4.439253 AGAAATTGCTGTATCCCTACCC 57.561 45.455 0.00 0.00 0.00 3.69
508 652 4.047883 AGAAATTGCTGTATCCCTACCCT 58.952 43.478 0.00 0.00 0.00 4.34
509 653 5.224441 AGAAATTGCTGTATCCCTACCCTA 58.776 41.667 0.00 0.00 0.00 3.53
510 654 4.976540 AATTGCTGTATCCCTACCCTAC 57.023 45.455 0.00 0.00 0.00 3.18
511 655 3.408157 TTGCTGTATCCCTACCCTACA 57.592 47.619 0.00 0.00 0.00 2.74
512 656 3.630625 TGCTGTATCCCTACCCTACAT 57.369 47.619 0.00 0.00 0.00 2.29
513 657 3.507411 TGCTGTATCCCTACCCTACATC 58.493 50.000 0.00 0.00 0.00 3.06
514 658 3.142217 TGCTGTATCCCTACCCTACATCT 59.858 47.826 0.00 0.00 0.00 2.90
515 659 3.511934 GCTGTATCCCTACCCTACATCTG 59.488 52.174 0.00 0.00 0.00 2.90
516 660 4.742012 CTGTATCCCTACCCTACATCTGT 58.258 47.826 0.00 0.00 0.00 3.41
517 661 5.751128 GCTGTATCCCTACCCTACATCTGTA 60.751 48.000 0.00 0.00 0.00 2.74
518 662 6.479395 TGTATCCCTACCCTACATCTGTAT 57.521 41.667 0.00 0.00 0.00 2.29
519 663 6.491383 TGTATCCCTACCCTACATCTGTATC 58.509 44.000 0.00 0.00 0.00 2.24
520 664 5.887480 ATCCCTACCCTACATCTGTATCT 57.113 43.478 0.00 0.00 0.00 1.98
521 665 5.258216 TCCCTACCCTACATCTGTATCTC 57.742 47.826 0.00 0.00 0.00 2.75
522 666 4.044317 TCCCTACCCTACATCTGTATCTCC 59.956 50.000 0.00 0.00 0.00 3.71
523 667 4.011023 CCTACCCTACATCTGTATCTCCG 58.989 52.174 0.00 0.00 0.00 4.63
524 668 3.596940 ACCCTACATCTGTATCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
525 669 3.223435 ACCCTACATCTGTATCTCCGTG 58.777 50.000 0.00 0.00 0.00 4.94
526 670 3.223435 CCCTACATCTGTATCTCCGTGT 58.777 50.000 0.00 0.00 0.00 4.49
527 671 3.253677 CCCTACATCTGTATCTCCGTGTC 59.746 52.174 0.00 0.00 0.00 3.67
528 672 3.253677 CCTACATCTGTATCTCCGTGTCC 59.746 52.174 0.00 0.00 0.00 4.02
529 673 1.676529 ACATCTGTATCTCCGTGTCCG 59.323 52.381 0.00 0.00 0.00 4.79
530 674 0.669077 ATCTGTATCTCCGTGTCCGC 59.331 55.000 0.00 0.00 0.00 5.54
531 675 1.298413 CTGTATCTCCGTGTCCGCG 60.298 63.158 0.00 0.00 0.00 6.46
536 693 4.849329 CTCCGTGTCCGCGCTACC 62.849 72.222 5.56 0.00 0.00 3.18
566 723 8.246180 CAGCATACTTTCATGAATTTTAGGTGT 58.754 33.333 9.40 1.97 0.00 4.16
646 813 1.323534 CAAACCATACTACGTGAGCGC 59.676 52.381 0.00 0.00 42.83 5.92
693 860 9.562583 GAAGTATAGAGTAGGCTTGATTATTCG 57.437 37.037 0.00 0.00 0.00 3.34
709 876 0.815095 TTCGCTGATTGGTCGCTCTA 59.185 50.000 0.00 0.00 0.00 2.43
786 961 4.156008 GGTTGTAGCCACCTAAACTTCATG 59.844 45.833 0.00 0.00 0.00 3.07
802 977 6.674694 ACTTCATGAAAGTATGCTTGCTAG 57.325 37.500 9.88 0.00 46.55 3.42
806 981 7.870509 TCATGAAAGTATGCTTGCTAGATTT 57.129 32.000 2.95 0.00 34.71 2.17
843 1028 9.413048 CAGTTTCTCTAAATTACTTCGAGTCTT 57.587 33.333 0.00 0.00 0.00 3.01
858 1048 3.611986 CGAGTCTTGTTCTCATCTTCTGC 59.388 47.826 0.00 0.00 32.79 4.26
873 1063 7.475015 TCATCTTCTGCACTTTATTTATGCAC 58.525 34.615 0.00 0.00 44.17 4.57
954 1151 3.535629 CTCGCAGGCTGTGGTCCAA 62.536 63.158 26.40 7.19 0.00 3.53
993 1190 1.131126 CAATTCACGAGAGGCGCATTT 59.869 47.619 10.83 0.00 46.04 2.32
1236 1433 0.033503 TCGAGACCCATGTCCAGCTA 60.034 55.000 0.00 0.00 42.81 3.32
1470 1667 1.410224 CCCAAGGGCTACCAGATTTCC 60.410 57.143 0.00 0.00 40.13 3.13
1491 1688 3.328505 CCAGTTTGACATTCCAATTGCC 58.671 45.455 0.00 0.00 0.00 4.52
1539 1736 0.385390 CACTTGAGTTTGGTGGTGGC 59.615 55.000 0.00 0.00 0.00 5.01
1778 2091 7.499232 ACAGAGCAACAGTACATTTTCTAAACT 59.501 33.333 0.00 0.00 0.00 2.66
1812 2125 9.322773 TCATAAATGCTAAAGATGAAGAGTCAG 57.677 33.333 0.00 0.00 37.14 3.51
1981 2303 0.187361 TTGGTTTAGCCCTGCCTGTT 59.813 50.000 0.00 0.00 36.04 3.16
2033 2355 1.741706 ACTGAGATTCAAATGCGGCAG 59.258 47.619 9.25 0.00 0.00 4.85
2073 2395 1.143684 AGGTGAAGTGGTGAACTGCAT 59.856 47.619 0.00 0.00 46.64 3.96
2215 2607 5.479306 ACATGTGTGGTTATGTGAGAGTAC 58.521 41.667 0.00 0.00 36.26 2.73
2319 2838 8.506168 TCAGAATCAAACAATTATGTACTCCC 57.494 34.615 0.00 0.00 39.40 4.30
2320 2839 8.328758 TCAGAATCAAACAATTATGTACTCCCT 58.671 33.333 0.00 0.00 39.40 4.20
2321 2840 8.616076 CAGAATCAAACAATTATGTACTCCCTC 58.384 37.037 0.00 0.00 39.40 4.30
2322 2841 7.775561 AGAATCAAACAATTATGTACTCCCTCC 59.224 37.037 0.00 0.00 39.40 4.30
2323 2842 5.424757 TCAAACAATTATGTACTCCCTCCG 58.575 41.667 0.00 0.00 39.40 4.63
2324 2843 5.046159 TCAAACAATTATGTACTCCCTCCGT 60.046 40.000 0.00 0.00 39.40 4.69
2325 2844 5.431179 AACAATTATGTACTCCCTCCGTT 57.569 39.130 0.00 0.00 39.40 4.44
2326 2845 5.019785 ACAATTATGTACTCCCTCCGTTC 57.980 43.478 0.00 0.00 38.24 3.95
2327 2846 4.141779 ACAATTATGTACTCCCTCCGTTCC 60.142 45.833 0.00 0.00 38.24 3.62
2328 2847 3.393426 TTATGTACTCCCTCCGTTCCT 57.607 47.619 0.00 0.00 0.00 3.36
2329 2848 4.524802 TTATGTACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
2330 2849 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2331 2850 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2332 2851 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2333 2852 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2334 2853 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2335 2854 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2336 2855 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2337 2856 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2338 2857 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
2339 2858 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
2340 2859 5.541484 TCCCTCCGTTCCTAAATATAAGACC 59.459 44.000 0.00 0.00 0.00 3.85
2341 2860 5.543020 CCCTCCGTTCCTAAATATAAGACCT 59.457 44.000 0.00 0.00 0.00 3.85
2342 2861 6.042897 CCCTCCGTTCCTAAATATAAGACCTT 59.957 42.308 0.00 0.00 0.00 3.50
2343 2862 7.419865 CCCTCCGTTCCTAAATATAAGACCTTT 60.420 40.741 0.00 0.00 0.00 3.11
2344 2863 7.991460 CCTCCGTTCCTAAATATAAGACCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2362 2881 9.620259 AGACCTTTTAGAGATTTCAATATGGAC 57.380 33.333 0.00 0.00 0.00 4.02
2363 2882 9.620259 GACCTTTTAGAGATTTCAATATGGACT 57.380 33.333 0.00 0.00 0.00 3.85
2371 2890 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
2372 2891 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
2373 2892 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
2374 2893 6.971726 TTCAATATGGACTACATACGGAGT 57.028 37.500 0.00 0.00 44.41 3.85
2392 2911 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
2393 2912 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
2467 2986 9.269453 CTAAAAGGTCTTATATTTAGGAACGGG 57.731 37.037 0.00 0.00 33.69 5.28
2468 2987 5.820404 AGGTCTTATATTTAGGAACGGGG 57.180 43.478 0.00 0.00 0.00 5.73
2469 2988 4.596212 AGGTCTTATATTTAGGAACGGGGG 59.404 45.833 0.00 0.00 0.00 5.40
2495 3014 4.408182 AGAGTATTGGCTAATCGCACTT 57.592 40.909 0.00 0.00 41.67 3.16
2715 3234 2.499693 TCCCTTCGCTGTGATGTGAATA 59.500 45.455 0.00 0.00 36.13 1.75
3007 3546 6.364976 CAGCATACAATATTGACATTGCATGG 59.635 38.462 22.16 12.66 38.94 3.66
3053 3759 2.093869 GCCATTCAGTTGGTGCATGAAT 60.094 45.455 6.65 6.65 42.81 2.57
3055 3761 4.571919 CCATTCAGTTGGTGCATGAATTT 58.428 39.130 9.28 0.00 40.71 1.82
3085 3791 6.607198 TGAATTTTCAGAGGTTTGGTTCTCTT 59.393 34.615 0.00 0.00 38.19 2.85
3099 3805 4.072839 GGTTCTCTTTGTAGAGGTTTGGG 58.927 47.826 2.61 0.00 46.57 4.12
3184 4321 7.092137 TCTTTGCCTTCAGAAATATCATGTG 57.908 36.000 0.00 0.00 0.00 3.21
3278 4683 5.988561 GCAACAATGGACATTACAAAGGAAA 59.011 36.000 0.00 0.00 0.00 3.13
3314 4719 6.054295 AGCAAGCAGTTCCTTAGATCATTAG 58.946 40.000 0.00 0.00 0.00 1.73
3316 4721 6.317391 GCAAGCAGTTCCTTAGATCATTAGTT 59.683 38.462 0.00 0.00 0.00 2.24
3475 4885 4.335315 TCATTTTCTGCAATAAGTAGGGCG 59.665 41.667 0.00 0.00 0.00 6.13
3614 5027 3.974222 GCTTGTGCTTTCAGCCTTT 57.026 47.368 0.00 0.00 41.51 3.11
3615 5028 1.775869 GCTTGTGCTTTCAGCCTTTC 58.224 50.000 0.00 0.00 41.51 2.62
3616 5029 1.067516 GCTTGTGCTTTCAGCCTTTCA 59.932 47.619 0.00 0.00 41.51 2.69
3617 5030 2.735823 CTTGTGCTTTCAGCCTTTCAC 58.264 47.619 0.00 0.00 41.51 3.18
3618 5031 2.057137 TGTGCTTTCAGCCTTTCACT 57.943 45.000 0.00 0.00 41.51 3.41
3624 5037 5.985530 GTGCTTTCAGCCTTTCACTTATTTT 59.014 36.000 0.00 0.00 41.51 1.82
3630 5043 9.744468 TTTCAGCCTTTCACTTATTTTACTTTC 57.256 29.630 0.00 0.00 0.00 2.62
3778 5191 6.111768 AGTGAGTACATTGATGAAATTCGC 57.888 37.500 0.00 0.02 0.00 4.70
4020 5437 6.314648 TCACATGATCTTCTAATGTCTTGTGC 59.685 38.462 0.00 0.00 42.09 4.57
4073 5490 3.084786 CTCCTTTCCTGACAACCCATTC 58.915 50.000 0.00 0.00 0.00 2.67
4098 5515 6.543831 CCTCTATTATTTACTGCAGCTTTGGT 59.456 38.462 15.27 0.00 0.00 3.67
4269 5686 3.418684 TTAACACCTCTGGAGCTTTCC 57.581 47.619 0.00 0.00 0.00 3.13
4395 5841 9.249053 TGTTATGCAGTCCCTTCATTTTAATTA 57.751 29.630 0.00 0.00 0.00 1.40
4430 5876 0.682209 GCACTGATTCTGGTGGCCAT 60.682 55.000 9.72 0.00 34.41 4.40
4658 6137 7.102993 ACCAATCAAAATATGCCCTACAAAAC 58.897 34.615 0.00 0.00 0.00 2.43
4883 6375 3.334691 TCTCAGGTTTTGCCATTAGTCG 58.665 45.455 0.00 0.00 40.61 4.18
4888 6380 2.222953 GGTTTTGCCATTAGTCGTAGCG 60.223 50.000 0.00 0.00 37.17 4.26
4994 6486 7.358263 AGTCTGTGATAGAGGAGAAGGATTTA 58.642 38.462 0.00 0.00 35.70 1.40
5033 6525 6.778069 TGGTCACATTGGTTACTATTTGGAAA 59.222 34.615 0.00 0.00 0.00 3.13
5037 6531 8.303156 TCACATTGGTTACTATTTGGAAACATG 58.697 33.333 0.00 0.00 42.32 3.21
5104 6598 0.453793 CGGTTTCAAGTGTGTTGCCA 59.546 50.000 0.00 0.00 0.00 4.92
5105 6599 1.135257 CGGTTTCAAGTGTGTTGCCAA 60.135 47.619 0.00 0.00 0.00 4.52
5106 6600 2.267426 GGTTTCAAGTGTGTTGCCAAC 58.733 47.619 0.00 0.00 0.00 3.77
5108 6602 3.520569 GTTTCAAGTGTGTTGCCAACAT 58.479 40.909 14.22 0.00 44.35 2.71
5109 6603 3.883830 TTCAAGTGTGTTGCCAACATT 57.116 38.095 14.22 1.06 44.35 2.71
5110 6604 3.162202 TCAAGTGTGTTGCCAACATTG 57.838 42.857 14.22 13.86 44.35 2.82
5111 6605 2.495270 TCAAGTGTGTTGCCAACATTGT 59.505 40.909 14.22 0.00 44.35 2.71
5112 6606 3.056250 TCAAGTGTGTTGCCAACATTGTT 60.056 39.130 14.22 4.64 44.35 2.83
5113 6607 3.608316 AGTGTGTTGCCAACATTGTTT 57.392 38.095 14.22 0.00 44.35 2.83
5115 6609 4.322567 AGTGTGTTGCCAACATTGTTTTT 58.677 34.783 14.22 0.00 44.35 1.94
5116 6610 5.482908 AGTGTGTTGCCAACATTGTTTTTA 58.517 33.333 14.22 0.00 44.35 1.52
5117 6611 5.934625 AGTGTGTTGCCAACATTGTTTTTAA 59.065 32.000 14.22 0.00 44.35 1.52
5119 6613 5.352569 TGTGTTGCCAACATTGTTTTTAAGG 59.647 36.000 14.22 0.00 44.35 2.69
5120 6614 4.333926 TGTTGCCAACATTGTTTTTAAGGC 59.666 37.500 16.81 16.81 41.15 4.35
5122 6616 4.712476 TGCCAACATTGTTTTTAAGGCAT 58.288 34.783 20.54 0.00 45.10 4.40
5123 6617 4.754114 TGCCAACATTGTTTTTAAGGCATC 59.246 37.500 20.54 1.13 45.10 3.91
5124 6618 4.154015 GCCAACATTGTTTTTAAGGCATCC 59.846 41.667 18.10 0.00 40.50 3.51
5125 6619 5.550290 CCAACATTGTTTTTAAGGCATCCT 58.450 37.500 0.00 0.00 33.87 3.24
5126 6620 5.409214 CCAACATTGTTTTTAAGGCATCCTG 59.591 40.000 0.00 0.00 32.13 3.86
5127 6621 4.568956 ACATTGTTTTTAAGGCATCCTGC 58.431 39.130 0.00 0.00 44.08 4.85
5136 6630 3.724494 GCATCCTGCCTTAGACGC 58.276 61.111 0.00 0.00 37.42 5.19
5137 6631 1.144936 GCATCCTGCCTTAGACGCT 59.855 57.895 0.00 0.00 37.42 5.07
5138 6632 0.462759 GCATCCTGCCTTAGACGCTT 60.463 55.000 0.00 0.00 37.42 4.68
5139 6633 1.202533 GCATCCTGCCTTAGACGCTTA 60.203 52.381 0.00 0.00 37.42 3.09
5140 6634 2.748605 CATCCTGCCTTAGACGCTTAG 58.251 52.381 0.00 0.00 0.00 2.18
5141 6635 1.112113 TCCTGCCTTAGACGCTTAGG 58.888 55.000 7.32 7.32 33.87 2.69
5157 6651 2.203209 GGCGATAAGGCACCCTGG 60.203 66.667 0.00 0.00 45.92 4.45
5158 6652 2.902343 GCGATAAGGCACCCTGGC 60.902 66.667 0.00 0.00 44.10 4.85
5159 6653 2.589540 CGATAAGGCACCCTGGCA 59.410 61.111 0.00 0.00 46.46 4.92
5160 6654 1.524621 CGATAAGGCACCCTGGCAG 60.525 63.158 7.75 7.75 46.46 4.85
5161 6655 1.825622 GATAAGGCACCCTGGCAGC 60.826 63.158 9.56 0.00 46.46 5.25
5162 6656 3.704231 ATAAGGCACCCTGGCAGCG 62.704 63.158 9.56 2.56 46.46 5.18
5175 6669 2.405892 GGCAGCGCCTTACAAATATG 57.594 50.000 2.29 0.00 46.69 1.78
5176 6670 1.600413 GGCAGCGCCTTACAAATATGC 60.600 52.381 2.29 2.54 46.69 3.14
5177 6671 1.600413 GCAGCGCCTTACAAATATGCC 60.600 52.381 2.29 0.00 0.00 4.40
5178 6672 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
5179 6673 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
5180 6674 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
5181 6675 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
5182 6676 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
5183 6677 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
5184 6678 2.034558 CCTTACAAATATGCCCGCCTTG 59.965 50.000 0.00 0.00 0.00 3.61
5185 6679 1.686355 TACAAATATGCCCGCCTTGG 58.314 50.000 0.00 0.00 37.55 3.61
5236 6730 4.643387 GTGGTGCTCGCCTTGGGT 62.643 66.667 0.86 0.00 0.00 4.51
5237 6731 4.329545 TGGTGCTCGCCTTGGGTC 62.330 66.667 0.86 0.00 0.00 4.46
5242 6736 4.394712 CTCGCCTTGGGTCGCCTT 62.395 66.667 0.00 0.00 0.00 4.35
5243 6737 2.998480 TCGCCTTGGGTCGCCTTA 60.998 61.111 0.00 0.00 0.00 2.69
5244 6738 2.818274 CGCCTTGGGTCGCCTTAC 60.818 66.667 0.00 0.00 0.00 2.34
5245 6739 2.437895 GCCTTGGGTCGCCTTACC 60.438 66.667 0.00 0.00 38.94 2.85
5246 6740 2.125269 CCTTGGGTCGCCTTACCG 60.125 66.667 0.00 0.00 40.73 4.02
5247 6741 2.818274 CTTGGGTCGCCTTACCGC 60.818 66.667 0.00 0.00 40.73 5.68
5248 6742 4.397832 TTGGGTCGCCTTACCGCC 62.398 66.667 0.00 0.00 40.73 6.13
5250 6744 4.091939 GGGTCGCCTTACCGCCTT 62.092 66.667 0.00 0.00 40.73 4.35
5251 6745 2.724273 GGGTCGCCTTACCGCCTTA 61.724 63.158 0.00 0.00 40.73 2.69
5252 6746 1.444672 GGTCGCCTTACCGCCTTAT 59.555 57.895 0.00 0.00 0.00 1.73
5253 6747 0.675633 GGTCGCCTTACCGCCTTATA 59.324 55.000 0.00 0.00 0.00 0.98
5254 6748 1.069049 GGTCGCCTTACCGCCTTATAA 59.931 52.381 0.00 0.00 0.00 0.98
5255 6749 2.483538 GGTCGCCTTACCGCCTTATAAA 60.484 50.000 0.00 0.00 0.00 1.40
5256 6750 2.541346 GTCGCCTTACCGCCTTATAAAC 59.459 50.000 0.00 0.00 0.00 2.01
5257 6751 2.168106 TCGCCTTACCGCCTTATAAACA 59.832 45.455 0.00 0.00 0.00 2.83
5258 6752 2.937799 CGCCTTACCGCCTTATAAACAA 59.062 45.455 0.00 0.00 0.00 2.83
5259 6753 3.562557 CGCCTTACCGCCTTATAAACAAT 59.437 43.478 0.00 0.00 0.00 2.71
5260 6754 4.553938 CGCCTTACCGCCTTATAAACAATG 60.554 45.833 0.00 0.00 0.00 2.82
5261 6755 4.261447 GCCTTACCGCCTTATAAACAATGG 60.261 45.833 0.00 0.00 0.00 3.16
5262 6756 4.885325 CCTTACCGCCTTATAAACAATGGT 59.115 41.667 0.00 0.00 0.00 3.55
5303 6797 4.762825 CCGTCGAGGAACAACCAA 57.237 55.556 6.70 0.00 45.00 3.67
5309 6803 2.420722 GTCGAGGAACAACCAAACAACA 59.579 45.455 0.00 0.00 42.04 3.33
5346 6840 4.756135 TGAAATTGAAAGCTGAAATTGGGC 59.244 37.500 0.00 0.00 0.00 5.36
5384 6878 6.861055 GCGTCCTTTTGATTTCATCAGTTTTA 59.139 34.615 0.00 0.00 40.94 1.52
5386 6880 7.860373 CGTCCTTTTGATTTCATCAGTTTTACA 59.140 33.333 0.00 0.00 40.94 2.41
5387 6881 8.968242 GTCCTTTTGATTTCATCAGTTTTACAC 58.032 33.333 0.00 0.00 40.94 2.90
5472 7032 3.818773 GCTTTTAGTCTGTGCTTGGGTTA 59.181 43.478 0.00 0.00 0.00 2.85
5507 7071 3.567478 ACTACTGGGAAATGGCAGATC 57.433 47.619 0.00 0.00 0.00 2.75
5531 7095 0.033405 ATCCAGCAGCAATTGAGGCT 60.033 50.000 10.34 13.74 43.77 4.58
5633 7199 3.088532 TGCTGGCCAGGTTAGTTATTTG 58.911 45.455 33.46 5.07 0.00 2.32
5635 7201 4.263550 TGCTGGCCAGGTTAGTTATTTGTA 60.264 41.667 33.46 0.18 0.00 2.41
5650 7227 2.595750 TTGTATGTGTTCCCCTTGGG 57.404 50.000 0.00 0.00 46.11 4.12
5687 7264 2.298661 CCCCTTGGGTAGCCTTCGT 61.299 63.158 13.11 0.00 38.25 3.85
5723 7307 4.645136 ACTCACGAGAGCTGACCATATTTA 59.355 41.667 9.97 0.00 46.09 1.40
5724 7308 5.127194 ACTCACGAGAGCTGACCATATTTAA 59.873 40.000 9.97 0.00 46.09 1.52
5725 7309 5.592054 TCACGAGAGCTGACCATATTTAAG 58.408 41.667 0.00 0.00 0.00 1.85
5726 7310 5.359860 TCACGAGAGCTGACCATATTTAAGA 59.640 40.000 0.00 0.00 0.00 2.10
5727 7311 6.042777 CACGAGAGCTGACCATATTTAAGAA 58.957 40.000 0.00 0.00 0.00 2.52
5728 7312 6.535150 CACGAGAGCTGACCATATTTAAGAAA 59.465 38.462 0.00 0.00 0.00 2.52
5729 7313 6.535508 ACGAGAGCTGACCATATTTAAGAAAC 59.464 38.462 0.00 0.00 0.00 2.78
5795 7379 7.366847 TGTTTTATTGAACAAAATCCTGGGA 57.633 32.000 0.00 0.00 36.64 4.37
5864 7449 2.356535 GGTCCTTGATGAGTGGAGCATT 60.357 50.000 0.00 0.00 44.85 3.56
5869 7454 3.421919 TGATGAGTGGAGCATTGAACA 57.578 42.857 0.00 0.00 0.00 3.18
5888 7473 0.540923 AAAAGCAAAACCCTGCAGCA 59.459 45.000 8.66 0.00 45.18 4.41
5971 7556 4.778958 TGCTTTGAATTTGGGATGGATCTT 59.221 37.500 0.00 0.00 0.00 2.40
6068 7655 7.280876 GCTGATAATAAGAATGGAGTTGTGTGA 59.719 37.037 0.00 0.00 0.00 3.58
6073 7660 8.862325 AATAAGAATGGAGTTGTGTGATGTAA 57.138 30.769 0.00 0.00 0.00 2.41
6097 7684 7.706281 AAGATGAATTATCTGCGTAGACTTG 57.294 36.000 4.99 0.00 45.41 3.16
6115 7704 5.810587 AGACTTGTGTTACTATATGCCGTTG 59.189 40.000 0.00 0.00 0.00 4.10
6186 7775 2.465860 TGGTTGTACGCAGCTGTAAT 57.534 45.000 16.64 3.60 0.00 1.89
6191 7780 4.083484 GGTTGTACGCAGCTGTAATCTTTT 60.083 41.667 16.64 0.00 0.00 2.27
6233 7822 5.372343 AGACCACTGCATCACCAATATTA 57.628 39.130 0.00 0.00 0.00 0.98
6234 7823 5.754782 AGACCACTGCATCACCAATATTAA 58.245 37.500 0.00 0.00 0.00 1.40
6347 7936 9.535878 AATTGTACGTTTAAATTGGTGTTTCAT 57.464 25.926 0.00 0.00 0.00 2.57
6349 7938 8.928270 TGTACGTTTAAATTGGTGTTTCATTT 57.072 26.923 0.00 0.00 0.00 2.32
6354 7943 9.639636 CGTTTAAATTGGTGTTTCATTTAAACC 57.360 29.630 22.05 12.07 45.36 3.27
6360 7949 8.606040 ATTGGTGTTTCATTTAAACCTTGATG 57.394 30.769 0.00 0.00 45.83 3.07
6361 7950 7.118496 TGGTGTTTCATTTAAACCTTGATGT 57.882 32.000 0.00 0.00 45.83 3.06
6363 7952 8.043710 TGGTGTTTCATTTAAACCTTGATGTTT 58.956 29.630 0.00 0.00 45.83 2.83
6364 7953 8.547894 GGTGTTTCATTTAAACCTTGATGTTTC 58.452 33.333 0.00 0.00 45.83 2.78
6365 7954 9.092876 GTGTTTCATTTAAACCTTGATGTTTCA 57.907 29.630 0.00 0.00 45.83 2.69
6386 7975 9.521503 GTTTCATTCTTTTTAGAAGAAGCAACT 57.478 29.630 4.35 0.00 39.36 3.16
6393 7982 0.475906 AGAAGAAGCAACTGTGGGCT 59.524 50.000 1.78 1.78 43.46 5.19
6394 7983 0.595095 GAAGAAGCAACTGTGGGCTG 59.405 55.000 7.83 0.00 40.93 4.85
6400 7989 1.228063 CAACTGTGGGCTGACAGCT 60.228 57.895 25.92 2.95 46.28 4.24
6432 8022 5.779529 ACATTTTGCTTCAGTGATTCACT 57.220 34.783 13.61 13.61 46.51 3.41
6451 8041 3.084786 ACTAAAAGGCTGATCACTTGCC 58.915 45.455 15.00 15.00 46.42 4.52
6468 8058 1.814394 TGCCTGTCAACATCTGAATGC 59.186 47.619 0.00 0.00 35.22 3.56
6544 8301 2.434336 GCCAAAGAAACCTCCTTTTGGT 59.566 45.455 14.23 0.00 41.38 3.67
6547 8304 1.318576 AGAAACCTCCTTTTGGTGCG 58.681 50.000 0.00 0.00 41.38 5.34
6558 8315 3.551863 CCTTTTGGTGCGCTATGTTTCAA 60.552 43.478 9.73 0.00 34.07 2.69
6630 8388 6.983307 CACAACATTGATAACCTTTTCCAACA 59.017 34.615 0.00 0.00 0.00 3.33
6696 9198 5.768662 CCATTTCAGCACTTCATATCATCCT 59.231 40.000 0.00 0.00 0.00 3.24
6736 9242 1.903404 GGGTGAACAGGTGCTTGGG 60.903 63.158 0.00 0.00 0.00 4.12
6767 9273 3.069872 TGAAGTGCATGGCTTTTGACAAT 59.930 39.130 0.00 0.00 43.09 2.71
6770 9276 1.969208 TGCATGGCTTTTGACAATCCA 59.031 42.857 0.00 6.75 43.09 3.41
6779 9285 5.990996 GGCTTTTGACAATCCAAAGAAATGA 59.009 36.000 6.58 0.00 37.34 2.57
6796 9302 3.812156 ATGACATTCATGGTTGGCATG 57.188 42.857 14.14 0.00 40.09 4.06
6797 9303 1.826096 TGACATTCATGGTTGGCATGG 59.174 47.619 0.73 0.00 0.00 3.66
6798 9304 2.101783 GACATTCATGGTTGGCATGGA 58.898 47.619 0.00 0.00 0.00 3.41
6818 9324 4.142643 TGGAACAACACAAGTTTTCGTACC 60.143 41.667 0.00 0.00 35.28 3.34
6819 9325 4.095334 GGAACAACACAAGTTTTCGTACCT 59.905 41.667 0.00 0.00 35.28 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.153349 GATGTCCAGGGTTCGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
134 135 2.820037 GCTTACCGCTGGGAGCAC 60.820 66.667 15.09 0.00 42.58 4.40
154 155 1.226030 GCGTGGGCCGTGATATTACC 61.226 60.000 0.00 0.00 39.32 2.85
184 188 1.498264 GGGAAGGACTAAGGAGGGAC 58.502 60.000 0.00 0.00 0.00 4.46
397 429 9.890629 TCAGCATGTACTAAAGACTTGAATAAT 57.109 29.630 0.00 0.00 37.40 1.28
447 591 6.128876 CGGAGATACGGCGAGTATATATACAG 60.129 46.154 22.00 16.44 45.47 2.74
456 600 2.138320 CTTACGGAGATACGGCGAGTA 58.862 52.381 16.62 0.00 40.03 2.59
457 601 0.942962 CTTACGGAGATACGGCGAGT 59.057 55.000 16.62 0.00 38.39 4.18
458 602 0.237761 CCTTACGGAGATACGGCGAG 59.762 60.000 16.62 0.00 38.39 5.03
459 603 0.464373 ACCTTACGGAGATACGGCGA 60.464 55.000 16.62 0.00 38.39 5.54
463 607 4.741342 AGAAACAACCTTACGGAGATACG 58.259 43.478 0.00 0.00 40.31 3.06
495 639 4.827036 ACAGATGTAGGGTAGGGATACA 57.173 45.455 0.00 0.00 39.74 2.29
505 649 3.223435 ACACGGAGATACAGATGTAGGG 58.777 50.000 0.00 0.00 33.52 3.53
506 650 3.253677 GGACACGGAGATACAGATGTAGG 59.746 52.174 0.00 0.00 33.52 3.18
507 651 3.058846 CGGACACGGAGATACAGATGTAG 60.059 52.174 0.00 0.00 36.18 2.74
508 652 2.876550 CGGACACGGAGATACAGATGTA 59.123 50.000 0.00 0.00 36.18 2.29
509 653 1.676529 CGGACACGGAGATACAGATGT 59.323 52.381 0.00 0.00 36.18 3.06
510 654 1.600663 GCGGACACGGAGATACAGATG 60.601 57.143 0.00 0.00 41.36 2.90
511 655 0.669077 GCGGACACGGAGATACAGAT 59.331 55.000 0.00 0.00 41.36 2.90
512 656 1.712018 CGCGGACACGGAGATACAGA 61.712 60.000 0.00 0.00 41.36 3.41
513 657 1.298413 CGCGGACACGGAGATACAG 60.298 63.158 0.00 0.00 41.36 2.74
514 658 2.795973 CGCGGACACGGAGATACA 59.204 61.111 0.00 0.00 41.36 2.29
515 659 1.779025 TAGCGCGGACACGGAGATAC 61.779 60.000 8.83 0.00 41.36 2.24
516 660 1.524393 TAGCGCGGACACGGAGATA 60.524 57.895 8.83 0.00 41.36 1.98
517 661 2.827190 TAGCGCGGACACGGAGAT 60.827 61.111 8.83 0.00 41.36 2.75
518 662 3.807538 GTAGCGCGGACACGGAGA 61.808 66.667 8.83 0.00 41.36 3.71
519 663 4.849329 GGTAGCGCGGACACGGAG 62.849 72.222 8.83 0.00 41.36 4.63
525 669 4.814294 CTGGGTGGTAGCGCGGAC 62.814 72.222 8.83 4.03 0.00 4.79
528 672 3.439513 TATGCTGGGTGGTAGCGCG 62.440 63.158 0.00 0.00 44.01 6.86
529 673 1.887707 GTATGCTGGGTGGTAGCGC 60.888 63.158 0.00 0.00 44.01 5.92
530 674 0.178068 AAGTATGCTGGGTGGTAGCG 59.822 55.000 0.00 0.00 44.01 4.26
531 675 2.289565 GAAAGTATGCTGGGTGGTAGC 58.710 52.381 0.00 0.00 41.49 3.58
536 693 5.587388 AATTCATGAAAGTATGCTGGGTG 57.413 39.130 13.09 0.00 0.00 4.61
541 698 8.353423 ACACCTAAAATTCATGAAAGTATGCT 57.647 30.769 13.09 0.00 0.00 3.79
566 723 8.139350 GGTTGATTTATCATTCATGAATGCAGA 58.861 33.333 34.12 22.36 45.77 4.26
646 813 0.693049 AAACCTGGCTACTGACTGGG 59.307 55.000 0.00 0.00 43.76 4.45
693 860 1.565305 CACTAGAGCGACCAATCAGC 58.435 55.000 0.00 0.00 0.00 4.26
709 876 2.957402 TCAAGCCATTGTTCTCCACT 57.043 45.000 0.00 0.00 37.68 4.00
843 1028 7.750229 AAATAAAGTGCAGAAGATGAGAACA 57.250 32.000 0.00 0.00 0.00 3.18
873 1063 9.892130 AGGATAACAGAAGAAACCTGTAATAAG 57.108 33.333 0.00 0.00 43.42 1.73
954 1151 6.594788 AATTGCAATTCACAATCTACTGGT 57.405 33.333 18.99 0.00 36.74 4.00
1011 1208 2.291605 TGTTCTGATCCCTCGGAGAAGA 60.292 50.000 6.58 3.35 38.04 2.87
1146 1343 6.418057 TTGGTAGCCTGTTGAATTGATTTT 57.582 33.333 0.00 0.00 0.00 1.82
1236 1433 2.425143 ATGCCTTTGTGATGGTCGAT 57.575 45.000 0.00 0.00 0.00 3.59
1267 1464 2.795329 CTGGGAGCCATAGTTGTTTGT 58.205 47.619 0.00 0.00 30.82 2.83
1458 1655 4.651778 TGTCAAACTGGGAAATCTGGTAG 58.348 43.478 0.00 0.00 0.00 3.18
1470 1667 3.328505 GGCAATTGGAATGTCAAACTGG 58.671 45.455 7.72 0.00 0.00 4.00
1522 1719 0.754957 TGGCCACCACCAAACTCAAG 60.755 55.000 0.00 0.00 36.55 3.02
1539 1736 2.035626 ACCCCAAATCGCCTGTGG 59.964 61.111 0.00 0.00 0.00 4.17
1685 1998 6.656945 CAGCATAACAGAATAGCATGAGAAC 58.343 40.000 0.00 0.00 0.00 3.01
1970 2292 2.710096 TTCTGTATAACAGGCAGGGC 57.290 50.000 7.18 0.00 45.94 5.19
1981 2303 6.319405 TGACGCTGGTACTTACATTCTGTATA 59.681 38.462 0.00 0.00 32.20 1.47
2033 2355 0.813821 GCTCTTGCCCCATGAAGTTC 59.186 55.000 0.00 0.00 0.00 3.01
2215 2607 7.672983 AGTACACAATAACATGGTTCAGAAG 57.327 36.000 0.00 0.00 0.00 2.85
2314 2833 6.267242 GTCTTATATTTAGGAACGGAGGGAGT 59.733 42.308 0.00 0.00 0.00 3.85
2315 2834 6.295180 GGTCTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
2316 2835 5.541484 GGTCTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
2317 2836 5.543020 AGGTCTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
2318 2837 6.667558 AGGTCTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
2319 2838 8.959705 AAAAGGTCTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
2336 2855 9.620259 GTCCATATTGAAATCTCTAAAAGGTCT 57.380 33.333 0.00 0.00 0.00 3.85
2337 2856 9.620259 AGTCCATATTGAAATCTCTAAAAGGTC 57.380 33.333 0.00 0.00 0.00 3.85
2345 2864 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
2346 2865 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
2347 2866 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
2348 2867 8.088981 ACTCCGTATGTAGTCCATATTGAAATC 58.911 37.037 0.00 0.00 38.29 2.17
2349 2868 7.963532 ACTCCGTATGTAGTCCATATTGAAAT 58.036 34.615 0.00 0.00 38.29 2.17
2350 2869 7.356089 ACTCCGTATGTAGTCCATATTGAAA 57.644 36.000 0.00 0.00 38.29 2.69
2351 2870 6.971726 ACTCCGTATGTAGTCCATATTGAA 57.028 37.500 0.00 0.00 38.29 2.69
2352 2871 8.467963 TTTACTCCGTATGTAGTCCATATTGA 57.532 34.615 0.00 0.00 38.29 2.57
2353 2872 9.706691 ATTTTACTCCGTATGTAGTCCATATTG 57.293 33.333 0.00 0.00 38.29 1.90
2354 2873 9.706691 CATTTTACTCCGTATGTAGTCCATATT 57.293 33.333 0.00 0.00 38.29 1.28
2355 2874 9.085645 TCATTTTACTCCGTATGTAGTCCATAT 57.914 33.333 0.00 0.00 38.29 1.78
2356 2875 8.467963 TCATTTTACTCCGTATGTAGTCCATA 57.532 34.615 0.00 0.00 34.86 2.74
2357 2876 7.069578 ACTCATTTTACTCCGTATGTAGTCCAT 59.930 37.037 0.00 0.00 37.58 3.41
2358 2877 6.379133 ACTCATTTTACTCCGTATGTAGTCCA 59.621 38.462 0.00 0.00 0.00 4.02
2359 2878 6.696148 CACTCATTTTACTCCGTATGTAGTCC 59.304 42.308 0.00 0.00 0.00 3.85
2360 2879 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
2361 2880 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
2362 2881 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
2363 2882 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
2364 2883 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
2365 2884 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
2366 2885 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
2367 2886 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
2368 2887 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
2369 2888 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
2441 2960 9.269453 CCCGTTCCTAAATATAAGACCTTTTAG 57.731 37.037 0.00 0.00 33.47 1.85
2442 2961 8.212995 CCCCGTTCCTAAATATAAGACCTTTTA 58.787 37.037 0.00 0.00 0.00 1.52
2443 2962 7.058525 CCCCGTTCCTAAATATAAGACCTTTT 58.941 38.462 0.00 0.00 0.00 2.27
2444 2963 6.410041 CCCCCGTTCCTAAATATAAGACCTTT 60.410 42.308 0.00 0.00 0.00 3.11
2445 2964 5.072736 CCCCCGTTCCTAAATATAAGACCTT 59.927 44.000 0.00 0.00 0.00 3.50
2446 2965 4.596212 CCCCCGTTCCTAAATATAAGACCT 59.404 45.833 0.00 0.00 0.00 3.85
2447 2966 4.903054 CCCCCGTTCCTAAATATAAGACC 58.097 47.826 0.00 0.00 0.00 3.85
2466 2985 2.104669 AGCCAATACTCTACTCCCCC 57.895 55.000 0.00 0.00 0.00 5.40
2467 2986 4.082136 CGATTAGCCAATACTCTACTCCCC 60.082 50.000 0.00 0.00 0.00 4.81
2468 2987 4.618693 GCGATTAGCCAATACTCTACTCCC 60.619 50.000 0.00 0.00 40.81 4.30
2469 2988 4.487019 GCGATTAGCCAATACTCTACTCC 58.513 47.826 0.00 0.00 40.81 3.85
2478 2997 7.845312 TGTAGTTACAAGTGCGATTAGCCAATA 60.845 37.037 0.00 0.00 38.00 1.90
2523 3042 1.269998 GCCGACCAGAATAGCGATACT 59.730 52.381 0.00 0.00 0.00 2.12
2715 3234 5.097742 TGTCCAATTGGTCGAACAGATAT 57.902 39.130 23.76 0.00 36.34 1.63
3007 3546 9.043079 GCTAACCAGATAACTTCCTTATGTAAC 57.957 37.037 0.00 0.00 0.00 2.50
3085 3791 3.634910 GACTTTTGCCCAAACCTCTACAA 59.365 43.478 0.00 0.00 0.00 2.41
3099 3805 4.708726 AGCATACATGAAGGACTTTTGC 57.291 40.909 0.00 0.00 0.00 3.68
3184 4321 7.660208 TCCATGACTCTGGTAACTTTTCTTAAC 59.340 37.037 0.00 0.00 37.57 2.01
3278 4683 3.484407 ACTGCTTGCTCTCAGAAAATGT 58.516 40.909 6.66 0.00 34.57 2.71
3475 4885 3.630312 GCCGGGAGATCTCATAGTCTATC 59.370 52.174 23.85 3.36 0.00 2.08
3608 5021 7.010771 AGGGAAAGTAAAATAAGTGAAAGGCT 58.989 34.615 0.00 0.00 0.00 4.58
3609 5022 7.228314 AGGGAAAGTAAAATAAGTGAAAGGC 57.772 36.000 0.00 0.00 0.00 4.35
3610 5023 9.734984 TCTAGGGAAAGTAAAATAAGTGAAAGG 57.265 33.333 0.00 0.00 0.00 3.11
3624 5037 7.398332 ACGGATTTAGAAACTCTAGGGAAAGTA 59.602 37.037 0.00 0.00 29.56 2.24
3630 5043 6.641474 AGAAACGGATTTAGAAACTCTAGGG 58.359 40.000 0.00 0.00 29.56 3.53
3778 5191 2.426738 TGGAAGCTCGGGCATTAAATTG 59.573 45.455 11.40 0.00 41.70 2.32
3888 5301 6.780031 TCCATGACAAGGGAAAATGAAAGTAA 59.220 34.615 0.00 0.00 31.97 2.24
3894 5311 4.463539 CACATCCATGACAAGGGAAAATGA 59.536 41.667 0.00 0.00 40.30 2.57
4073 5490 6.543831 ACCAAAGCTGCAGTAAATAATAGAGG 59.456 38.462 16.64 5.22 0.00 3.69
4098 5515 5.450550 GGACGAACATACACAGATCAGATCA 60.451 44.000 13.14 0.00 0.00 2.92
4269 5686 8.908678 CCATTCTTTATGTATGCAATCATTTCG 58.091 33.333 11.23 2.83 34.22 3.46
4381 5825 7.041098 AGCAGCGTAGGATAATTAAAATGAAGG 60.041 37.037 0.00 0.00 0.00 3.46
4593 6065 9.733556 TGACCAACAAATACTTCATTAGTATGT 57.266 29.630 0.00 0.00 46.92 2.29
4658 6137 1.135689 CGGAAACCTTCAGCCATTTCG 60.136 52.381 0.00 0.00 32.87 3.46
4823 6304 3.069872 ACAGAACATGAGGCATGCAAAAA 59.930 39.130 21.36 1.70 44.80 1.94
4837 6318 8.297470 AGGAATGCATATTTGTAACAGAACAT 57.703 30.769 0.00 0.00 0.00 2.71
4883 6375 9.911980 GAAGGTATTACAATTTTAGAACGCTAC 57.088 33.333 0.00 0.00 0.00 3.58
4994 6486 4.431416 TGTGACCACATTTACCTGAACT 57.569 40.909 0.00 0.00 36.21 3.01
5063 6557 3.113745 CAGGGCCGCAGCATTAAG 58.886 61.111 0.00 0.00 42.56 1.85
5120 6614 2.546795 CCTAAGCGTCTAAGGCAGGATG 60.547 54.545 0.00 0.00 40.87 3.51
5121 6615 1.689273 CCTAAGCGTCTAAGGCAGGAT 59.311 52.381 0.00 0.00 27.35 3.24
5122 6616 1.112113 CCTAAGCGTCTAAGGCAGGA 58.888 55.000 0.00 0.00 27.35 3.86
5123 6617 3.669354 CCTAAGCGTCTAAGGCAGG 57.331 57.895 0.00 0.00 0.00 4.85
5135 6629 0.885150 GGGTGCCTTATCGCCTAAGC 60.885 60.000 0.00 0.00 36.30 3.09
5136 6630 0.759346 AGGGTGCCTTATCGCCTAAG 59.241 55.000 0.00 0.00 37.22 2.18
5137 6631 0.468226 CAGGGTGCCTTATCGCCTAA 59.532 55.000 0.00 0.00 36.85 2.69
5138 6632 1.407656 CCAGGGTGCCTTATCGCCTA 61.408 60.000 0.00 0.00 36.85 3.93
5139 6633 2.746375 CCAGGGTGCCTTATCGCCT 61.746 63.158 0.00 0.00 36.85 5.52
5140 6634 2.203209 CCAGGGTGCCTTATCGCC 60.203 66.667 0.00 0.00 35.93 5.54
5141 6635 2.902343 GCCAGGGTGCCTTATCGC 60.902 66.667 0.00 0.00 0.00 4.58
5142 6636 1.524621 CTGCCAGGGTGCCTTATCG 60.525 63.158 0.00 0.00 0.00 2.92
5143 6637 1.825622 GCTGCCAGGGTGCCTTATC 60.826 63.158 0.00 0.00 0.00 1.75
5144 6638 2.276740 GCTGCCAGGGTGCCTTAT 59.723 61.111 0.00 0.00 0.00 1.73
5145 6639 4.408821 CGCTGCCAGGGTGCCTTA 62.409 66.667 0.00 0.00 0.00 2.69
5157 6651 1.600413 GGCATATTTGTAAGGCGCTGC 60.600 52.381 7.64 4.69 0.00 5.25
5158 6652 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
5159 6653 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
5160 6654 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
5161 6655 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
5162 6656 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
5163 6657 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
5164 6658 2.034558 CCAAGGCGGGCATATTTGTAAG 59.965 50.000 3.78 0.00 0.00 2.34
5165 6659 2.028130 CCAAGGCGGGCATATTTGTAA 58.972 47.619 3.78 0.00 0.00 2.41
5166 6660 1.686355 CCAAGGCGGGCATATTTGTA 58.314 50.000 3.78 0.00 0.00 2.41
5167 6661 2.503775 CCAAGGCGGGCATATTTGT 58.496 52.632 3.78 0.00 0.00 2.83
5209 6703 3.775654 AGCACCACCCGCTCTAGC 61.776 66.667 0.00 0.00 33.35 3.42
5219 6713 4.643387 ACCCAAGGCGAGCACCAC 62.643 66.667 0.00 0.00 0.00 4.16
5220 6714 4.329545 GACCCAAGGCGAGCACCA 62.330 66.667 0.00 0.00 0.00 4.17
5225 6719 3.014085 TAAGGCGACCCAAGGCGAG 62.014 63.158 0.00 0.00 39.33 5.03
5226 6720 2.998480 TAAGGCGACCCAAGGCGA 60.998 61.111 0.00 0.00 39.33 5.54
5227 6721 2.818274 GTAAGGCGACCCAAGGCG 60.818 66.667 0.00 0.00 39.33 5.52
5228 6722 2.437895 GGTAAGGCGACCCAAGGC 60.438 66.667 0.47 0.00 32.88 4.35
5229 6723 2.125269 CGGTAAGGCGACCCAAGG 60.125 66.667 6.10 0.00 35.95 3.61
5230 6724 2.818274 GCGGTAAGGCGACCCAAG 60.818 66.667 6.10 0.00 35.95 3.61
5231 6725 4.397832 GGCGGTAAGGCGACCCAA 62.398 66.667 6.10 0.00 35.95 4.12
5238 6732 9.953443 CAACCATTGTTTATAAGGCGGTAAGGC 62.953 44.444 0.00 0.00 37.99 4.35
5239 6733 4.885325 ACCATTGTTTATAAGGCGGTAAGG 59.115 41.667 0.00 0.00 0.00 2.69
5240 6734 6.262601 CAACCATTGTTTATAAGGCGGTAAG 58.737 40.000 0.00 0.00 30.42 2.34
5241 6735 5.393243 GCAACCATTGTTTATAAGGCGGTAA 60.393 40.000 0.00 0.00 30.42 2.85
5242 6736 4.096682 GCAACCATTGTTTATAAGGCGGTA 59.903 41.667 0.00 0.00 30.42 4.02
5243 6737 3.119280 GCAACCATTGTTTATAAGGCGGT 60.119 43.478 0.00 0.00 30.42 5.68
5244 6738 3.443976 GCAACCATTGTTTATAAGGCGG 58.556 45.455 0.00 0.00 30.42 6.13
5245 6739 3.119316 TGGCAACCATTGTTTATAAGGCG 60.119 43.478 0.00 0.00 30.42 5.52
5246 6740 4.464069 TGGCAACCATTGTTTATAAGGC 57.536 40.909 0.00 0.00 30.42 4.35
5247 6741 6.036577 AGTTGGCAACCATTGTTTATAAGG 57.963 37.500 25.81 0.00 31.53 2.69
5248 6742 7.961325 AAAGTTGGCAACCATTGTTTATAAG 57.039 32.000 25.81 0.00 31.53 1.73
5249 6743 7.227512 CCAAAAGTTGGCAACCATTGTTTATAA 59.772 33.333 28.77 0.00 45.17 0.98
5250 6744 6.708054 CCAAAAGTTGGCAACCATTGTTTATA 59.292 34.615 28.77 0.00 45.17 0.98
5251 6745 5.530543 CCAAAAGTTGGCAACCATTGTTTAT 59.469 36.000 28.77 10.00 45.17 1.40
5252 6746 4.878397 CCAAAAGTTGGCAACCATTGTTTA 59.122 37.500 28.77 0.00 45.17 2.01
5253 6747 3.693578 CCAAAAGTTGGCAACCATTGTTT 59.306 39.130 28.77 20.11 45.17 2.83
5254 6748 3.277715 CCAAAAGTTGGCAACCATTGTT 58.722 40.909 28.77 16.50 45.17 2.83
5255 6749 2.916640 CCAAAAGTTGGCAACCATTGT 58.083 42.857 28.77 14.22 45.17 2.71
5384 6878 6.041423 TCATCACAACATATCAGACAGTGT 57.959 37.500 0.00 0.00 0.00 3.55
5386 6880 6.535963 TCTCATCACAACATATCAGACAGT 57.464 37.500 0.00 0.00 0.00 3.55
5387 6881 9.708092 ATTATCTCATCACAACATATCAGACAG 57.292 33.333 0.00 0.00 0.00 3.51
5472 7032 7.504926 TCCCAGTAGTAAATGTTAGTTGGAT 57.495 36.000 0.00 0.00 0.00 3.41
5507 7071 0.248498 CAATTGCTGCTGGATCTGCG 60.248 55.000 0.00 0.00 34.22 5.18
5531 7095 5.238868 GTCAGCGAGTACTTGATCTACCATA 59.761 44.000 14.70 0.00 0.00 2.74
5650 7227 5.922053 AGGGGAAACATATACGAAGGTTAC 58.078 41.667 0.00 0.00 0.00 2.50
5687 7264 3.379057 TCTCGTGAGTGCGGAAACATATA 59.621 43.478 0.00 0.00 0.00 0.86
5723 7307 3.138283 TCATCACCTGGAACCAGTTTCTT 59.862 43.478 17.92 0.00 42.15 2.52
5724 7308 2.711009 TCATCACCTGGAACCAGTTTCT 59.289 45.455 17.92 0.00 42.15 2.52
5725 7309 3.140325 TCATCACCTGGAACCAGTTTC 57.860 47.619 17.92 0.00 42.15 2.78
5726 7310 3.593442 TTCATCACCTGGAACCAGTTT 57.407 42.857 17.92 3.68 42.15 2.66
5727 7311 3.490348 CTTTCATCACCTGGAACCAGTT 58.510 45.455 17.92 2.60 42.15 3.16
5728 7312 2.815589 GCTTTCATCACCTGGAACCAGT 60.816 50.000 17.92 5.37 42.15 4.00
5729 7313 1.815003 GCTTTCATCACCTGGAACCAG 59.185 52.381 13.32 13.32 43.26 4.00
5855 7440 3.096489 TGCTTTTGTTCAATGCTCCAC 57.904 42.857 10.46 0.00 36.65 4.02
5864 7449 2.027745 TGCAGGGTTTTGCTTTTGTTCA 60.028 40.909 0.00 0.00 44.38 3.18
5869 7454 0.540923 TGCTGCAGGGTTTTGCTTTT 59.459 45.000 17.12 0.00 44.38 2.27
5888 7473 2.536066 GCCCCCAAAAATGTAGTTCCT 58.464 47.619 0.00 0.00 0.00 3.36
5981 7566 5.551760 ACAAAATCCATGCTCTAAACGAG 57.448 39.130 0.00 0.00 42.88 4.18
6024 7611 3.250762 TCAGCTCAAACACAGTGTTATGC 59.749 43.478 19.45 20.51 40.14 3.14
6068 7655 9.197694 GTCTACGCAGATAATTCATCTTTACAT 57.802 33.333 0.00 0.00 41.49 2.29
6073 7660 7.223582 CACAAGTCTACGCAGATAATTCATCTT 59.776 37.037 0.00 0.00 41.49 2.40
6097 7684 7.941795 ATAGAACAACGGCATATAGTAACAC 57.058 36.000 0.00 0.00 0.00 3.32
6146 7735 3.367992 AAATGCAAATGCTCACGTTCA 57.632 38.095 6.97 0.00 42.66 3.18
6147 7736 3.120923 CCAAAATGCAAATGCTCACGTTC 60.121 43.478 6.97 0.00 42.66 3.95
6150 7739 2.406130 ACCAAAATGCAAATGCTCACG 58.594 42.857 6.97 0.00 42.66 4.35
6233 7822 7.014615 ACAAAGGTCAGCTTATTTCAGTGAATT 59.985 33.333 6.36 5.94 0.00 2.17
6234 7823 6.491403 ACAAAGGTCAGCTTATTTCAGTGAAT 59.509 34.615 6.36 0.01 0.00 2.57
6352 7941 9.971922 CTTCTAAAAAGAATGAAACATCAAGGT 57.028 29.630 0.00 0.00 0.00 3.50
6356 7945 9.683069 GCTTCTTCTAAAAAGAATGAAACATCA 57.317 29.630 1.05 0.00 35.90 3.07
6357 7946 9.683069 TGCTTCTTCTAAAAAGAATGAAACATC 57.317 29.630 1.05 0.00 35.90 3.06
6360 7949 9.521503 AGTTGCTTCTTCTAAAAAGAATGAAAC 57.478 29.630 1.05 6.68 35.90 2.78
6361 7950 9.520204 CAGTTGCTTCTTCTAAAAAGAATGAAA 57.480 29.630 1.05 0.00 35.90 2.69
6363 7952 8.131100 CACAGTTGCTTCTTCTAAAAAGAATGA 58.869 33.333 1.05 0.00 35.90 2.57
6364 7953 7.380602 CCACAGTTGCTTCTTCTAAAAAGAATG 59.619 37.037 1.05 0.10 35.90 2.67
6365 7954 7.428826 CCACAGTTGCTTCTTCTAAAAAGAAT 58.571 34.615 1.05 0.00 35.90 2.40
6368 7957 5.523369 CCCACAGTTGCTTCTTCTAAAAAG 58.477 41.667 0.00 0.00 0.00 2.27
6386 7975 0.106769 TTTTCAGCTGTCAGCCCACA 60.107 50.000 21.32 0.68 43.77 4.17
6393 7982 6.200665 GCAAAATGTACAATTTTCAGCTGTCA 59.799 34.615 14.67 0.00 0.00 3.58
6394 7983 6.421801 AGCAAAATGTACAATTTTCAGCTGTC 59.578 34.615 14.67 0.57 32.58 3.51
6400 7989 7.978414 TCACTGAAGCAAAATGTACAATTTTCA 59.022 29.630 6.16 7.45 0.00 2.69
6451 8041 2.079158 ACGGCATTCAGATGTTGACAG 58.921 47.619 0.00 0.00 34.94 3.51
6468 8058 3.206150 CCTCCATACCAAGAATTCACGG 58.794 50.000 8.44 9.77 0.00 4.94
6547 8304 3.514645 CCCATTGTGCTTGAAACATAGC 58.485 45.455 0.00 0.00 37.89 2.97
6648 8406 3.825908 TTGGCTCCCTAGGATTTTTGT 57.174 42.857 11.48 0.00 0.00 2.83
6649 8407 4.089361 AGTTTGGCTCCCTAGGATTTTTG 58.911 43.478 11.48 0.00 0.00 2.44
6696 9198 5.534654 CCCTTTCAGTTTGTCCATCTGTTTA 59.465 40.000 0.00 0.00 0.00 2.01
6736 9242 5.064441 AGCCATGCACTTCAAGTAATTTC 57.936 39.130 0.00 0.00 0.00 2.17
6767 9273 6.457355 CAACCATGAATGTCATTTCTTTGGA 58.543 36.000 17.15 0.00 34.28 3.53
6770 9276 5.221682 TGCCAACCATGAATGTCATTTCTTT 60.222 36.000 0.00 0.00 34.28 2.52
6796 9302 4.095334 AGGTACGAAAACTTGTGTTGTTCC 59.905 41.667 0.00 0.00 36.39 3.62
6797 9303 5.225899 AGGTACGAAAACTTGTGTTGTTC 57.774 39.130 0.00 0.00 36.39 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.