Multiple sequence alignment - TraesCS6B01G130600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G130600 chr6B 100.000 3951 0 0 1 3951 127318069 127322019 0.000000e+00 7297
1 TraesCS6B01G130600 chr6B 90.331 393 24 8 1702 2084 127319568 127319956 1.640000e-138 503
2 TraesCS6B01G130600 chr6B 90.331 393 24 8 1500 1888 127319770 127320152 1.640000e-138 503
3 TraesCS6B01G130600 chr6D 94.794 922 39 3 970 1888 56841624 56842539 0.000000e+00 1428
4 TraesCS6B01G130600 chr6D 91.784 998 60 8 1703 2695 56842155 56843135 0.000000e+00 1369
5 TraesCS6B01G130600 chr6D 85.136 1137 106 29 2813 3938 56844928 56846012 0.000000e+00 1105
6 TraesCS6B01G130600 chr6D 91.765 680 47 6 5 678 56840798 56841474 0.000000e+00 937
7 TraesCS6B01G130600 chr6D 94.488 127 7 0 852 978 56841463 56841589 3.110000e-46 196
8 TraesCS6B01G130600 chr6D 85.052 194 22 6 1895 2084 56842155 56842345 1.450000e-44 191
9 TraesCS6B01G130600 chr6A 94.261 941 34 7 970 1893 71444394 71445331 0.000000e+00 1421
10 TraesCS6B01G130600 chr6A 84.581 1122 112 29 2813 3910 71445995 71447079 0.000000e+00 1057
11 TraesCS6B01G130600 chr6A 92.701 685 41 5 1 678 71443563 71444245 0.000000e+00 979
12 TraesCS6B01G130600 chr6A 93.199 544 33 4 2255 2794 71445460 71446003 0.000000e+00 797
13 TraesCS6B01G130600 chr6A 89.758 537 37 8 1702 2222 71444930 71445464 0.000000e+00 671
14 TraesCS6B01G130600 chr6A 84.848 198 20 7 1894 2084 71444930 71445124 1.450000e-44 191
15 TraesCS6B01G130600 chr6A 92.913 127 8 1 852 978 71444234 71444359 2.420000e-42 183
16 TraesCS6B01G130600 chr1B 86.545 550 49 3 979 1528 672851145 672851669 2.050000e-162 582
17 TraesCS6B01G130600 chr1B 89.600 125 13 0 854 978 672850977 672851101 4.090000e-35 159
18 TraesCS6B01G130600 chr1B 84.848 132 9 3 548 675 672850850 672850974 5.360000e-24 122
19 TraesCS6B01G130600 chr7D 85.179 560 54 5 978 1537 568318797 568318267 7.460000e-152 547
20 TraesCS6B01G130600 chr7D 91.339 127 10 1 854 979 568318964 568318838 5.250000e-39 172
21 TraesCS6B01G130600 chr7D 85.606 132 8 3 548 675 568319091 568318967 1.150000e-25 128
22 TraesCS6B01G130600 chr2B 89.888 267 27 0 1262 1528 745494642 745494908 1.050000e-90 344
23 TraesCS6B01G130600 chr2B 84.444 180 20 3 673 852 133025406 133025577 1.890000e-38 171
24 TraesCS6B01G130600 chr5D 88.398 181 19 1 677 855 508112124 508111944 2.390000e-52 217
25 TraesCS6B01G130600 chr4A 88.953 172 17 1 676 845 448515059 448515230 1.110000e-50 211
26 TraesCS6B01G130600 chr3D 87.429 175 20 1 678 850 463808831 463808657 2.410000e-47 200
27 TraesCS6B01G130600 chr3D 89.333 150 14 1 705 852 354613688 354613837 1.870000e-43 187
28 TraesCS6B01G130600 chr7A 86.207 174 22 1 677 848 469986370 469986543 1.870000e-43 187
29 TraesCS6B01G130600 chr2A 86.441 177 16 2 677 853 601706972 601706804 1.870000e-43 187
30 TraesCS6B01G130600 chr4D 85.542 166 15 2 678 842 478247856 478248013 8.780000e-37 165
31 TraesCS6B01G130600 chr2D 88.148 135 14 1 677 809 650719444 650719578 4.090000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G130600 chr6B 127318069 127322019 3950 False 2767.666667 7297 93.554000 1 3951 3 chr6B.!!$F1 3950
1 TraesCS6B01G130600 chr6D 56840798 56846012 5214 False 871.000000 1428 90.503167 5 3938 6 chr6D.!!$F1 3933
2 TraesCS6B01G130600 chr6A 71443563 71447079 3516 False 757.000000 1421 90.323000 1 3910 7 chr6A.!!$F1 3909
3 TraesCS6B01G130600 chr1B 672850850 672851669 819 False 287.666667 582 86.997667 548 1528 3 chr1B.!!$F1 980
4 TraesCS6B01G130600 chr7D 568318267 568319091 824 True 282.333333 547 87.374667 548 1537 3 chr7D.!!$R1 989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 861 0.179205 GGAACGATTCGTCGACTCGT 60.179 55.0 28.23 28.23 46.68 4.18 F
1681 1748 0.036010 CCATGCTGAACTCCCTTCGT 60.036 55.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2680 2750 0.037326 TTGGTACTTCAGCAGCCGAG 60.037 55.0 0.0 0.0 35.7 4.63 R
3255 5046 0.036388 CTTGGCTCGGTGGAAGCTTA 60.036 55.0 0.0 0.0 0.0 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.647424 TGTTTGTTTAGGGTTTCAGCTG 57.353 40.909 7.63 7.63 0.00 4.24
24 25 4.020543 TGTTTGTTTAGGGTTTCAGCTGT 58.979 39.130 14.67 0.00 0.00 4.40
25 26 4.142271 TGTTTGTTTAGGGTTTCAGCTGTG 60.142 41.667 14.67 0.00 0.00 3.66
26 27 3.290948 TGTTTAGGGTTTCAGCTGTGT 57.709 42.857 14.67 0.00 0.00 3.72
51 53 2.627515 TCTGTCATGCTATTCCTGCC 57.372 50.000 0.00 0.00 0.00 4.85
65 67 2.654863 TCCTGCCCTGCTTTTATTAGC 58.345 47.619 0.00 0.00 41.59 3.09
88 90 7.493367 AGCTAGTTATCCTGTAACTGTTGATC 58.507 38.462 2.69 0.00 38.16 2.92
97 99 8.463930 TCCTGTAACTGTTGATCATTTCTTTT 57.536 30.769 2.69 0.00 0.00 2.27
110 112 7.669304 TGATCATTTCTTTTGTGTATCCAAGGA 59.331 33.333 0.00 0.00 0.00 3.36
157 159 9.236691 CCGAACTAATATGTGGAATCATTTTTG 57.763 33.333 0.00 0.00 0.00 2.44
184 186 2.806608 CAAGTTGCATCCACTTGCTT 57.193 45.000 14.94 0.00 43.18 3.91
190 192 5.857268 AGTTGCATCCACTTGCTTTATTTT 58.143 33.333 0.00 0.00 43.18 1.82
244 246 4.714632 TGTTAGCTAGGTTCTTGTTGCTT 58.285 39.130 0.00 0.00 32.72 3.91
269 271 3.070878 TCCATAGATAGAATTGCGCACCA 59.929 43.478 11.12 0.00 0.00 4.17
275 277 1.216178 GAATTGCGCACCAATGGCT 59.784 52.632 11.12 0.00 43.22 4.75
306 312 1.878953 AGTTTGCTGTCCCGTAAGTG 58.121 50.000 0.00 0.00 0.00 3.16
329 335 3.306364 GGTTCTGATCTAGCAGTGTGTGT 60.306 47.826 0.00 0.00 37.20 3.72
332 338 1.344114 TGATCTAGCAGTGTGTGTGCA 59.656 47.619 0.00 0.00 43.82 4.57
333 339 1.728971 GATCTAGCAGTGTGTGTGCAC 59.271 52.381 10.75 10.75 43.82 4.57
377 383 9.559732 CCTACCTATGATGTGATACATTTTTCA 57.440 33.333 0.00 0.00 39.27 2.69
391 397 5.841810 ACATTTTTCACACCCAATGTACTG 58.158 37.500 0.00 0.00 40.64 2.74
402 408 5.810587 CACCCAATGTACTGTGTAGTGTATC 59.189 44.000 0.00 0.00 37.78 2.24
604 614 9.784531 CTACCTAAGATGTGATACATTTTCCAT 57.215 33.333 1.60 0.00 39.27 3.41
607 617 5.428496 AGATGTGATACATTTTCCATGCG 57.572 39.130 0.00 0.00 39.27 4.73
615 625 6.989759 TGATACATTTTCCATGCGTAGTGTAT 59.010 34.615 9.56 9.56 35.07 2.29
735 753 2.091852 GAGTCTCAACTCCAAGGCTG 57.908 55.000 0.00 0.00 45.26 4.85
736 754 1.620819 GAGTCTCAACTCCAAGGCTGA 59.379 52.381 0.00 0.00 45.26 4.26
737 755 1.346068 AGTCTCAACTCCAAGGCTGAC 59.654 52.381 0.00 0.00 0.00 3.51
738 756 1.346068 GTCTCAACTCCAAGGCTGACT 59.654 52.381 0.00 0.00 0.00 3.41
739 757 2.563179 GTCTCAACTCCAAGGCTGACTA 59.437 50.000 0.00 0.00 0.00 2.59
740 758 2.563179 TCTCAACTCCAAGGCTGACTAC 59.437 50.000 0.00 0.00 0.00 2.73
741 759 2.300152 CTCAACTCCAAGGCTGACTACA 59.700 50.000 0.00 0.00 0.00 2.74
742 760 2.037251 TCAACTCCAAGGCTGACTACAC 59.963 50.000 0.00 0.00 0.00 2.90
743 761 2.016905 ACTCCAAGGCTGACTACACT 57.983 50.000 0.00 0.00 0.00 3.55
744 762 2.330216 ACTCCAAGGCTGACTACACTT 58.670 47.619 0.00 0.00 0.00 3.16
745 763 2.300437 ACTCCAAGGCTGACTACACTTC 59.700 50.000 0.00 0.00 0.00 3.01
746 764 2.300152 CTCCAAGGCTGACTACACTTCA 59.700 50.000 0.00 0.00 0.00 3.02
747 765 2.300152 TCCAAGGCTGACTACACTTCAG 59.700 50.000 0.00 0.00 43.01 3.02
748 766 2.037772 CCAAGGCTGACTACACTTCAGT 59.962 50.000 0.00 0.00 42.26 3.41
764 782 6.914259 CACTTCAGTGTTGACTAGTCTATGA 58.086 40.000 23.01 13.40 40.96 2.15
765 783 7.026562 CACTTCAGTGTTGACTAGTCTATGAG 58.973 42.308 23.01 11.99 40.96 2.90
766 784 6.717540 ACTTCAGTGTTGACTAGTCTATGAGT 59.282 38.462 23.01 12.52 31.71 3.41
767 785 6.745159 TCAGTGTTGACTAGTCTATGAGTC 57.255 41.667 23.01 4.89 42.08 3.36
768 786 5.351740 TCAGTGTTGACTAGTCTATGAGTCG 59.648 44.000 23.01 6.04 44.22 4.18
769 787 4.095185 AGTGTTGACTAGTCTATGAGTCGC 59.905 45.833 23.01 10.15 44.22 5.19
770 788 4.007659 TGTTGACTAGTCTATGAGTCGCA 58.992 43.478 23.01 6.02 44.22 5.10
771 789 4.457949 TGTTGACTAGTCTATGAGTCGCAA 59.542 41.667 23.01 3.53 44.22 4.85
772 790 5.048294 TGTTGACTAGTCTATGAGTCGCAAA 60.048 40.000 23.01 2.39 44.22 3.68
773 791 5.638596 TGACTAGTCTATGAGTCGCAAAA 57.361 39.130 23.01 0.00 44.22 2.44
774 792 6.020971 TGACTAGTCTATGAGTCGCAAAAA 57.979 37.500 23.01 0.00 44.22 1.94
799 817 7.829378 AAAAGGACTAGTGTCGATTAATCAC 57.171 36.000 15.57 12.19 43.79 3.06
800 818 5.171147 AGGACTAGTGTCGATTAATCACG 57.829 43.478 15.57 3.36 43.79 4.35
801 819 4.880120 AGGACTAGTGTCGATTAATCACGA 59.120 41.667 15.57 5.76 43.79 4.35
802 820 5.531659 AGGACTAGTGTCGATTAATCACGAT 59.468 40.000 15.57 7.73 43.79 3.73
803 821 6.039493 AGGACTAGTGTCGATTAATCACGATT 59.961 38.462 15.57 0.00 43.79 3.34
804 822 7.228108 AGGACTAGTGTCGATTAATCACGATTA 59.772 37.037 15.57 0.00 43.79 1.75
805 823 7.534578 GGACTAGTGTCGATTAATCACGATTAG 59.465 40.741 15.57 12.11 43.79 1.73
806 824 7.928103 ACTAGTGTCGATTAATCACGATTAGT 58.072 34.615 15.57 12.63 40.50 2.24
807 825 8.068977 ACTAGTGTCGATTAATCACGATTAGTC 58.931 37.037 15.57 10.64 40.50 2.59
808 826 7.028926 AGTGTCGATTAATCACGATTAGTCT 57.971 36.000 15.57 2.61 37.66 3.24
809 827 8.151141 AGTGTCGATTAATCACGATTAGTCTA 57.849 34.615 15.57 6.59 37.66 2.59
810 828 8.068977 AGTGTCGATTAATCACGATTAGTCTAC 58.931 37.037 15.57 15.27 37.66 2.59
811 829 7.058128 GTGTCGATTAATCACGATTAGTCTACG 59.942 40.741 15.57 7.63 37.93 3.51
812 830 7.042523 TGTCGATTAATCACGATTAGTCTACGA 60.043 37.037 15.57 9.25 37.93 3.43
813 831 7.474948 GTCGATTAATCACGATTAGTCTACGAG 59.525 40.741 15.57 5.05 37.66 4.18
814 832 7.170489 TCGATTAATCACGATTAGTCTACGAGT 59.830 37.037 15.57 0.00 37.66 4.18
815 833 7.474948 CGATTAATCACGATTAGTCTACGAGTC 59.525 40.741 15.57 0.00 37.66 3.36
816 834 7.783090 TTAATCACGATTAGTCTACGAGTCT 57.217 36.000 0.00 0.00 35.02 3.24
817 835 5.910637 ATCACGATTAGTCTACGAGTCTC 57.089 43.478 0.00 0.00 0.00 3.36
818 836 4.752146 TCACGATTAGTCTACGAGTCTCA 58.248 43.478 0.00 0.00 0.00 3.27
819 837 5.173664 TCACGATTAGTCTACGAGTCTCAA 58.826 41.667 0.00 0.00 0.00 3.02
820 838 5.063186 TCACGATTAGTCTACGAGTCTCAAC 59.937 44.000 0.00 0.00 0.00 3.18
821 839 5.063691 CACGATTAGTCTACGAGTCTCAACT 59.936 44.000 0.00 0.74 38.88 3.16
822 840 5.642919 ACGATTAGTCTACGAGTCTCAACTT 59.357 40.000 0.00 0.00 35.28 2.66
823 841 6.183360 ACGATTAGTCTACGAGTCTCAACTTC 60.183 42.308 0.00 0.00 35.28 3.01
824 842 5.527511 TTAGTCTACGAGTCTCAACTTCG 57.472 43.478 0.00 0.00 35.28 3.79
825 843 2.743126 AGTCTACGAGTCTCAACTTCGG 59.257 50.000 0.00 0.00 35.28 4.30
826 844 2.740981 GTCTACGAGTCTCAACTTCGGA 59.259 50.000 0.00 0.00 35.28 4.55
827 845 3.188048 GTCTACGAGTCTCAACTTCGGAA 59.812 47.826 0.00 0.00 35.28 4.30
828 846 2.418983 ACGAGTCTCAACTTCGGAAC 57.581 50.000 0.00 0.00 35.28 3.62
829 847 1.328439 CGAGTCTCAACTTCGGAACG 58.672 55.000 0.00 0.00 46.09 3.95
842 860 2.552431 GGAACGATTCGTCGACTCG 58.448 57.895 27.06 27.06 39.99 4.18
843 861 0.179205 GGAACGATTCGTCGACTCGT 60.179 55.000 28.23 28.23 46.68 4.18
844 862 1.061131 GGAACGATTCGTCGACTCGTA 59.939 52.381 31.98 3.58 44.66 3.43
845 863 2.474526 GGAACGATTCGTCGACTCGTAA 60.475 50.000 31.98 10.81 44.66 3.18
846 864 2.880822 ACGATTCGTCGACTCGTAAA 57.119 45.000 31.20 7.81 43.88 2.01
847 865 2.499896 ACGATTCGTCGACTCGTAAAC 58.500 47.619 31.20 7.88 43.88 2.01
848 866 1.836555 CGATTCGTCGACTCGTAAACC 59.163 52.381 22.43 0.00 31.70 3.27
849 867 2.475187 CGATTCGTCGACTCGTAAACCT 60.475 50.000 22.43 0.00 31.70 3.50
850 868 3.496155 GATTCGTCGACTCGTAAACCTT 58.504 45.455 14.70 0.00 0.00 3.50
851 869 2.320805 TCGTCGACTCGTAAACCTTG 57.679 50.000 14.70 0.00 0.00 3.61
852 870 1.872952 TCGTCGACTCGTAAACCTTGA 59.127 47.619 14.70 0.00 0.00 3.02
853 871 2.485426 TCGTCGACTCGTAAACCTTGAT 59.515 45.455 14.70 0.00 0.00 2.57
854 872 3.058016 TCGTCGACTCGTAAACCTTGATT 60.058 43.478 14.70 0.00 0.00 2.57
855 873 4.154015 TCGTCGACTCGTAAACCTTGATTA 59.846 41.667 14.70 0.00 0.00 1.75
856 874 5.032863 CGTCGACTCGTAAACCTTGATTAT 58.967 41.667 14.70 0.00 0.00 1.28
875 893 8.593492 TGATTATAACTCACATGAAGAATCGG 57.407 34.615 0.00 0.00 0.00 4.18
879 897 2.027745 ACTCACATGAAGAATCGGCAGT 60.028 45.455 0.00 0.00 0.00 4.40
1120 1181 1.295423 GCCACTCCTTTCGTGCCTA 59.705 57.895 0.00 0.00 0.00 3.93
1194 1258 7.393216 AGAAGCAAGTAGATGAGACTGAAAAT 58.607 34.615 0.00 0.00 0.00 1.82
1226 1290 2.499289 CTGACAAGTCTGCTGGGTATCT 59.501 50.000 1.53 0.00 0.00 1.98
1320 1384 3.213206 TCAAAAGGAGAAGCTGCTGAA 57.787 42.857 0.00 0.00 31.17 3.02
1425 1492 2.901839 AGCACTGAAGGCCAATGAATTT 59.098 40.909 5.01 0.00 0.00 1.82
1431 1498 0.171007 AGGCCAATGAATTTGACGCG 59.829 50.000 5.01 3.53 37.53 6.01
1480 1547 5.375417 TCTGGTACGTGAAATTCTCGTAA 57.625 39.130 25.18 14.03 46.01 3.18
1524 1591 5.628797 TGGTGTCCTGATGCATTAGATTA 57.371 39.130 19.43 2.44 0.00 1.75
1648 1715 5.098211 GCATTAGCTGAAACCATTTCTCAC 58.902 41.667 0.00 0.00 40.32 3.51
1681 1748 0.036010 CCATGCTGAACTCCCTTCGT 60.036 55.000 0.00 0.00 0.00 3.85
1728 1795 4.514441 GGTGTCCTGATGCATTAGATTCTG 59.486 45.833 19.43 2.96 0.00 3.02
1810 1877 0.892755 AACACAGCCATTGCCATCTG 59.107 50.000 0.00 0.00 38.69 2.90
1815 1882 2.493278 ACAGCCATTGCCATCTGTAAAC 59.507 45.455 0.00 0.00 37.94 2.01
1816 1883 2.492881 CAGCCATTGCCATCTGTAAACA 59.507 45.455 0.00 0.00 38.69 2.83
1817 1884 3.131577 CAGCCATTGCCATCTGTAAACAT 59.868 43.478 0.00 0.00 38.69 2.71
1818 1885 3.382546 AGCCATTGCCATCTGTAAACATC 59.617 43.478 0.00 0.00 38.69 3.06
1819 1886 3.130869 GCCATTGCCATCTGTAAACATCA 59.869 43.478 0.00 0.00 0.00 3.07
1820 1887 4.202182 GCCATTGCCATCTGTAAACATCAT 60.202 41.667 0.00 0.00 0.00 2.45
1821 1888 5.682990 GCCATTGCCATCTGTAAACATCATT 60.683 40.000 0.00 0.00 0.00 2.57
1822 1889 6.461370 GCCATTGCCATCTGTAAACATCATTA 60.461 38.462 0.00 0.00 0.00 1.90
1823 1890 7.143340 CCATTGCCATCTGTAAACATCATTAG 58.857 38.462 0.00 0.00 0.00 1.73
1824 1891 5.756195 TGCCATCTGTAAACATCATTAGC 57.244 39.130 0.00 0.00 0.00 3.09
1825 1892 5.439721 TGCCATCTGTAAACATCATTAGCT 58.560 37.500 0.00 0.00 0.00 3.32
1826 1893 5.297527 TGCCATCTGTAAACATCATTAGCTG 59.702 40.000 0.00 0.00 0.00 4.24
1827 1894 5.528690 GCCATCTGTAAACATCATTAGCTGA 59.471 40.000 0.00 0.00 38.53 4.26
1828 1895 6.038603 GCCATCTGTAAACATCATTAGCTGAA 59.961 38.462 0.00 0.00 37.44 3.02
1829 1896 7.415541 GCCATCTGTAAACATCATTAGCTGAAA 60.416 37.037 0.00 0.00 37.44 2.69
1830 1897 7.912250 CCATCTGTAAACATCATTAGCTGAAAC 59.088 37.037 0.00 0.00 37.44 2.78
1831 1898 7.377766 TCTGTAAACATCATTAGCTGAAACC 57.622 36.000 0.00 0.00 37.44 3.27
1832 1899 6.939730 TCTGTAAACATCATTAGCTGAAACCA 59.060 34.615 0.00 0.00 37.44 3.67
1833 1900 7.611467 TCTGTAAACATCATTAGCTGAAACCAT 59.389 33.333 0.00 0.00 37.44 3.55
1834 1901 8.121305 TGTAAACATCATTAGCTGAAACCATT 57.879 30.769 0.00 0.00 37.44 3.16
1835 1902 8.584157 TGTAAACATCATTAGCTGAAACCATTT 58.416 29.630 0.00 0.00 37.44 2.32
1836 1903 9.076596 GTAAACATCATTAGCTGAAACCATTTC 57.923 33.333 0.00 0.00 37.44 2.17
1837 1904 7.472334 AACATCATTAGCTGAAACCATTTCT 57.528 32.000 0.00 0.00 40.32 2.52
1838 1905 7.093322 ACATCATTAGCTGAAACCATTTCTC 57.907 36.000 0.00 0.00 40.32 2.87
1839 1906 6.660521 ACATCATTAGCTGAAACCATTTCTCA 59.339 34.615 0.00 0.00 40.32 3.27
1840 1907 7.341256 ACATCATTAGCTGAAACCATTTCTCAT 59.659 33.333 0.00 0.00 40.32 2.90
1841 1908 7.707624 TCATTAGCTGAAACCATTTCTCATT 57.292 32.000 0.00 0.00 40.32 2.57
1842 1909 7.541162 TCATTAGCTGAAACCATTTCTCATTG 58.459 34.615 0.00 0.00 40.32 2.82
1843 1910 4.184079 AGCTGAAACCATTTCTCATTGC 57.816 40.909 3.19 0.00 40.32 3.56
1844 1911 3.830755 AGCTGAAACCATTTCTCATTGCT 59.169 39.130 3.19 0.00 40.32 3.91
1845 1912 5.012239 AGCTGAAACCATTTCTCATTGCTA 58.988 37.500 3.19 0.00 40.32 3.49
1846 1913 5.477984 AGCTGAAACCATTTCTCATTGCTAA 59.522 36.000 3.19 0.00 40.32 3.09
1847 1914 6.154021 AGCTGAAACCATTTCTCATTGCTAAT 59.846 34.615 3.19 0.00 40.32 1.73
1848 1915 6.255020 GCTGAAACCATTTCTCATTGCTAATG 59.745 38.462 3.19 3.36 40.32 1.90
1849 1916 7.465353 TGAAACCATTTCTCATTGCTAATGA 57.535 32.000 10.01 10.01 44.80 2.57
1850 1917 8.070034 TGAAACCATTTCTCATTGCTAATGAT 57.930 30.769 10.62 0.00 46.10 2.45
1851 1918 8.192774 TGAAACCATTTCTCATTGCTAATGATC 58.807 33.333 10.62 0.00 46.10 2.92
1852 1919 7.893124 AACCATTTCTCATTGCTAATGATCT 57.107 32.000 10.62 0.00 46.10 2.75
1853 1920 7.893124 ACCATTTCTCATTGCTAATGATCTT 57.107 32.000 10.62 0.00 46.10 2.40
1854 1921 7.938715 ACCATTTCTCATTGCTAATGATCTTC 58.061 34.615 10.62 0.00 46.10 2.87
1855 1922 7.014038 ACCATTTCTCATTGCTAATGATCTTCC 59.986 37.037 10.62 0.00 46.10 3.46
1856 1923 7.013942 CCATTTCTCATTGCTAATGATCTTCCA 59.986 37.037 10.62 0.00 46.10 3.53
1857 1924 8.577296 CATTTCTCATTGCTAATGATCTTCCAT 58.423 33.333 10.62 0.00 46.10 3.41
1858 1925 7.506328 TTCTCATTGCTAATGATCTTCCATG 57.494 36.000 10.62 0.00 46.10 3.66
1859 1926 5.472478 TCTCATTGCTAATGATCTTCCATGC 59.528 40.000 10.62 0.00 46.10 4.06
1860 1927 5.382616 TCATTGCTAATGATCTTCCATGCT 58.617 37.500 7.27 0.00 42.69 3.79
1861 1928 5.240844 TCATTGCTAATGATCTTCCATGCTG 59.759 40.000 7.27 0.00 42.69 4.41
1862 1929 4.426736 TGCTAATGATCTTCCATGCTGA 57.573 40.909 0.00 0.00 0.00 4.26
1863 1930 4.386711 TGCTAATGATCTTCCATGCTGAG 58.613 43.478 0.00 0.00 0.00 3.35
1864 1931 3.188873 GCTAATGATCTTCCATGCTGAGC 59.811 47.826 0.00 0.00 0.00 4.26
1865 1932 3.579534 AATGATCTTCCATGCTGAGCT 57.420 42.857 5.83 0.00 0.00 4.09
1866 1933 2.616634 TGATCTTCCATGCTGAGCTC 57.383 50.000 6.82 6.82 0.00 4.09
1867 1934 1.140452 TGATCTTCCATGCTGAGCTCC 59.860 52.381 12.15 0.00 0.00 4.70
1868 1935 0.473326 ATCTTCCATGCTGAGCTCCC 59.527 55.000 12.15 2.65 0.00 4.30
1869 1936 0.619832 TCTTCCATGCTGAGCTCCCT 60.620 55.000 12.15 0.00 0.00 4.20
1870 1937 0.255318 CTTCCATGCTGAGCTCCCTT 59.745 55.000 12.15 0.00 0.00 3.95
1871 1938 0.254178 TTCCATGCTGAGCTCCCTTC 59.746 55.000 12.15 0.00 0.00 3.46
1872 1939 1.523258 CCATGCTGAGCTCCCTTCG 60.523 63.158 12.15 0.00 0.00 3.79
1873 1940 1.523258 CATGCTGAGCTCCCTTCGG 60.523 63.158 12.15 0.00 0.00 4.30
1874 1941 1.992277 ATGCTGAGCTCCCTTCGGT 60.992 57.895 12.15 0.00 0.00 4.69
1875 1942 2.125350 GCTGAGCTCCCTTCGGTG 60.125 66.667 12.15 0.00 0.00 4.94
1876 1943 2.125350 CTGAGCTCCCTTCGGTGC 60.125 66.667 12.15 0.00 46.98 5.01
1898 1965 4.840911 CGAAGCTGATGACAATGTTATGG 58.159 43.478 0.00 0.00 0.00 2.74
1899 1966 4.333649 CGAAGCTGATGACAATGTTATGGT 59.666 41.667 0.00 0.00 0.00 3.55
1900 1967 5.571784 AAGCTGATGACAATGTTATGGTG 57.428 39.130 0.00 0.00 0.00 4.17
1901 1968 4.592942 AGCTGATGACAATGTTATGGTGT 58.407 39.130 0.00 0.00 0.00 4.16
1902 1969 4.637534 AGCTGATGACAATGTTATGGTGTC 59.362 41.667 0.00 0.00 41.66 3.67
1903 1970 4.637534 GCTGATGACAATGTTATGGTGTCT 59.362 41.667 0.00 0.00 41.80 3.41
1904 1971 5.124457 GCTGATGACAATGTTATGGTGTCTT 59.876 40.000 0.00 0.00 41.80 3.01
1905 1972 6.499234 TGATGACAATGTTATGGTGTCTTG 57.501 37.500 0.00 0.00 41.80 3.02
1906 1973 5.415389 TGATGACAATGTTATGGTGTCTTGG 59.585 40.000 0.00 0.00 41.80 3.61
1907 1974 4.724399 TGACAATGTTATGGTGTCTTGGT 58.276 39.130 4.81 0.00 41.80 3.67
1908 1975 4.518590 TGACAATGTTATGGTGTCTTGGTG 59.481 41.667 4.81 0.00 41.80 4.17
1909 1976 3.255642 ACAATGTTATGGTGTCTTGGTGC 59.744 43.478 0.00 0.00 0.00 5.01
1910 1977 2.647683 TGTTATGGTGTCTTGGTGCA 57.352 45.000 0.00 0.00 0.00 4.57
1911 1978 3.153369 TGTTATGGTGTCTTGGTGCAT 57.847 42.857 0.00 0.00 0.00 3.96
1912 1979 3.495331 TGTTATGGTGTCTTGGTGCATT 58.505 40.909 0.00 0.00 0.00 3.56
1913 1980 4.657013 TGTTATGGTGTCTTGGTGCATTA 58.343 39.130 0.00 0.00 0.00 1.90
1914 1981 4.699735 TGTTATGGTGTCTTGGTGCATTAG 59.300 41.667 0.00 0.00 0.00 1.73
1915 1982 3.719268 ATGGTGTCTTGGTGCATTAGA 57.281 42.857 0.00 0.00 0.00 2.10
1916 1983 3.719268 TGGTGTCTTGGTGCATTAGAT 57.281 42.857 0.00 0.00 0.00 1.98
1917 1984 4.032960 TGGTGTCTTGGTGCATTAGATT 57.967 40.909 0.00 0.00 0.00 2.40
1918 1985 4.009675 TGGTGTCTTGGTGCATTAGATTC 58.990 43.478 0.00 0.00 0.00 2.52
1919 1986 4.263462 TGGTGTCTTGGTGCATTAGATTCT 60.263 41.667 0.00 0.00 0.00 2.40
1920 1987 4.702131 GGTGTCTTGGTGCATTAGATTCTT 59.298 41.667 0.00 0.00 0.00 2.52
1921 1988 5.183904 GGTGTCTTGGTGCATTAGATTCTTT 59.816 40.000 0.00 0.00 0.00 2.52
1922 1989 6.374333 GGTGTCTTGGTGCATTAGATTCTTTA 59.626 38.462 0.00 0.00 0.00 1.85
1923 1990 7.244192 GTGTCTTGGTGCATTAGATTCTTTAC 58.756 38.462 0.00 0.00 0.00 2.01
1924 1991 6.374333 TGTCTTGGTGCATTAGATTCTTTACC 59.626 38.462 0.00 0.00 0.00 2.85
1925 1992 6.599638 GTCTTGGTGCATTAGATTCTTTACCT 59.400 38.462 0.00 0.00 0.00 3.08
1926 1993 7.769044 GTCTTGGTGCATTAGATTCTTTACCTA 59.231 37.037 0.00 0.00 0.00 3.08
1927 1994 7.987458 TCTTGGTGCATTAGATTCTTTACCTAG 59.013 37.037 0.00 0.00 33.23 3.02
1928 1995 7.195374 TGGTGCATTAGATTCTTTACCTAGT 57.805 36.000 0.00 0.00 0.00 2.57
1929 1996 7.272978 TGGTGCATTAGATTCTTTACCTAGTC 58.727 38.462 0.00 0.00 0.00 2.59
1930 1997 7.125811 TGGTGCATTAGATTCTTTACCTAGTCT 59.874 37.037 0.00 0.00 0.00 3.24
1931 1998 7.988028 GGTGCATTAGATTCTTTACCTAGTCTT 59.012 37.037 0.00 0.00 0.00 3.01
1938 2005 8.079211 AGATTCTTTACCTAGTCTTATGTGCA 57.921 34.615 0.00 0.00 0.00 4.57
1939 2006 8.540388 AGATTCTTTACCTAGTCTTATGTGCAA 58.460 33.333 0.00 0.00 0.00 4.08
1940 2007 9.162764 GATTCTTTACCTAGTCTTATGTGCAAA 57.837 33.333 0.00 0.00 0.00 3.68
1941 2008 7.900782 TCTTTACCTAGTCTTATGTGCAAAC 57.099 36.000 0.00 0.00 0.00 2.93
1942 2009 6.877322 TCTTTACCTAGTCTTATGTGCAAACC 59.123 38.462 0.00 0.00 0.00 3.27
1943 2010 4.910458 ACCTAGTCTTATGTGCAAACCT 57.090 40.909 0.00 0.00 0.00 3.50
1944 2011 5.242795 ACCTAGTCTTATGTGCAAACCTT 57.757 39.130 0.00 0.00 0.00 3.50
1945 2012 5.003804 ACCTAGTCTTATGTGCAAACCTTG 58.996 41.667 0.00 0.00 0.00 3.61
1946 2013 5.003804 CCTAGTCTTATGTGCAAACCTTGT 58.996 41.667 0.00 0.00 0.00 3.16
1947 2014 6.170506 CCTAGTCTTATGTGCAAACCTTGTA 58.829 40.000 0.00 0.00 0.00 2.41
1948 2015 6.313905 CCTAGTCTTATGTGCAAACCTTGTAG 59.686 42.308 0.00 0.00 0.00 2.74
1949 2016 4.455877 AGTCTTATGTGCAAACCTTGTAGC 59.544 41.667 0.00 0.00 0.00 3.58
1950 2017 4.455877 GTCTTATGTGCAAACCTTGTAGCT 59.544 41.667 0.00 0.00 0.00 3.32
1951 2018 4.455533 TCTTATGTGCAAACCTTGTAGCTG 59.544 41.667 0.00 0.00 0.00 4.24
1952 2019 2.340210 TGTGCAAACCTTGTAGCTGA 57.660 45.000 0.00 0.00 0.00 4.26
1953 2020 2.649190 TGTGCAAACCTTGTAGCTGAA 58.351 42.857 0.00 0.00 0.00 3.02
1954 2021 3.221771 TGTGCAAACCTTGTAGCTGAAT 58.778 40.909 0.00 0.00 0.00 2.57
1955 2022 3.253188 TGTGCAAACCTTGTAGCTGAATC 59.747 43.478 0.00 0.00 0.00 2.52
1956 2023 3.253188 GTGCAAACCTTGTAGCTGAATCA 59.747 43.478 0.00 0.00 0.00 2.57
1957 2024 3.888323 TGCAAACCTTGTAGCTGAATCAA 59.112 39.130 0.00 0.00 0.00 2.57
1958 2025 4.229876 GCAAACCTTGTAGCTGAATCAAC 58.770 43.478 0.00 0.00 0.00 3.18
1959 2026 4.261572 GCAAACCTTGTAGCTGAATCAACA 60.262 41.667 0.00 0.00 0.00 3.33
1960 2027 5.565439 GCAAACCTTGTAGCTGAATCAACAT 60.565 40.000 0.00 0.00 0.00 2.71
1961 2028 5.886960 AACCTTGTAGCTGAATCAACATC 57.113 39.130 0.00 0.00 0.00 3.06
1962 2029 4.910195 ACCTTGTAGCTGAATCAACATCA 58.090 39.130 0.00 0.00 0.00 3.07
1963 2030 5.503927 ACCTTGTAGCTGAATCAACATCAT 58.496 37.500 0.00 0.00 0.00 2.45
1964 2031 5.356190 ACCTTGTAGCTGAATCAACATCATG 59.644 40.000 0.00 0.00 0.00 3.07
1965 2032 5.356190 CCTTGTAGCTGAATCAACATCATGT 59.644 40.000 0.00 0.00 0.00 3.21
1966 2033 6.127814 CCTTGTAGCTGAATCAACATCATGTT 60.128 38.462 0.00 0.00 42.08 2.71
1967 2034 6.822667 TGTAGCTGAATCAACATCATGTTT 57.177 33.333 0.00 0.00 38.77 2.83
1968 2035 7.218228 TGTAGCTGAATCAACATCATGTTTT 57.782 32.000 0.00 0.00 38.77 2.43
1969 2036 7.660112 TGTAGCTGAATCAACATCATGTTTTT 58.340 30.769 0.00 0.00 38.77 1.94
1991 2058 3.543680 TTCCCTATAGCAGAACACAGC 57.456 47.619 0.00 0.00 0.00 4.40
1992 2059 1.762957 TCCCTATAGCAGAACACAGCC 59.237 52.381 0.00 0.00 0.00 4.85
1993 2060 1.486310 CCCTATAGCAGAACACAGCCA 59.514 52.381 0.00 0.00 0.00 4.75
1994 2061 2.105477 CCCTATAGCAGAACACAGCCAT 59.895 50.000 0.00 0.00 0.00 4.40
1995 2062 3.434167 CCCTATAGCAGAACACAGCCATT 60.434 47.826 0.00 0.00 0.00 3.16
1996 2063 3.562973 CCTATAGCAGAACACAGCCATTG 59.437 47.826 0.00 0.00 0.00 2.82
1997 2064 1.167851 TAGCAGAACACAGCCATTGC 58.832 50.000 0.00 0.00 37.95 3.56
1998 2065 1.080298 GCAGAACACAGCCATTGCC 60.080 57.895 0.00 0.00 38.69 4.52
1999 2066 1.808531 GCAGAACACAGCCATTGCCA 61.809 55.000 0.00 0.00 38.69 4.92
2000 2067 0.892755 CAGAACACAGCCATTGCCAT 59.107 50.000 0.00 0.00 38.69 4.40
2001 2068 1.135199 CAGAACACAGCCATTGCCATC 60.135 52.381 0.00 0.00 38.69 3.51
2052 2120 5.530171 TCTCATTGCTAATGATCTTCCTTGC 59.470 40.000 10.62 0.00 46.10 4.01
2053 2121 5.443283 TCATTGCTAATGATCTTCCTTGCT 58.557 37.500 7.27 0.00 42.69 3.91
2062 2130 3.055530 TGATCTTCCTTGCTGAACTCTCC 60.056 47.826 0.00 0.00 0.00 3.71
2063 2131 2.329267 TCTTCCTTGCTGAACTCTCCA 58.671 47.619 0.00 0.00 0.00 3.86
2149 2217 1.227263 CTTCGTCCACATAGGCGGG 60.227 63.158 0.00 0.00 37.46 6.13
2157 2225 1.541233 CCACATAGGCGGGATGAGAAC 60.541 57.143 4.43 0.00 0.00 3.01
2185 2253 2.879756 GCTACATCTGGTCCAAGCCAAA 60.880 50.000 1.54 0.00 38.18 3.28
2191 2259 0.469144 TGGTCCAAGCCAAACCTTCC 60.469 55.000 0.00 0.00 35.25 3.46
2241 2309 3.076621 AGCACAATTTCTCGATTCTGCA 58.923 40.909 0.67 0.00 34.58 4.41
2351 2419 0.954452 CTGTTTGTTGGAGTCTGCCC 59.046 55.000 0.00 0.00 0.00 5.36
2382 2450 2.571212 CCTGGTTGCAAGTTGTACAGA 58.429 47.619 0.00 0.00 0.00 3.41
2391 2459 4.887071 TGCAAGTTGTACAGATCTTTTGGT 59.113 37.500 4.48 0.00 0.00 3.67
2416 2484 2.675889 GCCGTTTAGACTCCGGAATTCA 60.676 50.000 5.23 0.00 44.41 2.57
2477 2546 1.671054 CATTGCCGTGTTCTCCCGT 60.671 57.895 0.00 0.00 0.00 5.28
2565 2635 5.758296 GGTGCAAAGATATCCGATTTCAGTA 59.242 40.000 0.00 0.00 0.00 2.74
2612 2682 2.666619 GCCTTTGCGTGATTTGACTGAG 60.667 50.000 0.00 0.00 0.00 3.35
2616 2686 3.378911 TGCGTGATTTGACTGAGTGTA 57.621 42.857 0.00 0.00 0.00 2.90
2619 2689 4.152223 TGCGTGATTTGACTGAGTGTAATG 59.848 41.667 0.00 0.00 0.00 1.90
2625 2695 7.171508 GTGATTTGACTGAGTGTAATGTTGAGA 59.828 37.037 0.00 0.00 0.00 3.27
2637 2707 7.118390 AGTGTAATGTTGAGAATTCTAGTGCAC 59.882 37.037 9.40 9.40 0.00 4.57
2658 2728 3.689649 ACGATTAGTGGCAATTGTCTTCC 59.310 43.478 12.01 2.17 28.13 3.46
2673 2743 2.615912 GTCTTCCACTGATATGCCTTGC 59.384 50.000 0.00 0.00 0.00 4.01
2675 2745 2.336945 TCCACTGATATGCCTTGCTG 57.663 50.000 0.00 0.00 0.00 4.41
2680 2750 1.602851 CTGATATGCCTTGCTGTGAGC 59.397 52.381 0.00 0.00 42.82 4.26
2691 2761 3.292500 CTGTGAGCTCGGCTGCTGA 62.293 63.158 11.25 11.25 44.17 4.26
2698 2770 1.591703 CTCGGCTGCTGAAGTACCA 59.408 57.895 12.92 0.00 0.00 3.25
2731 4502 4.216257 AGCTGTAGCACATCGTTTTCAATT 59.784 37.500 6.65 0.00 45.16 2.32
2782 4554 2.833794 AGCTTTGCTTTGTCGTACTCA 58.166 42.857 0.00 0.00 33.89 3.41
2794 4566 2.599082 GTCGTACTCATCAAAAGGCGAG 59.401 50.000 0.00 0.00 0.00 5.03
2795 4567 2.230508 TCGTACTCATCAAAAGGCGAGT 59.769 45.455 0.00 0.00 41.45 4.18
2796 4568 2.599082 CGTACTCATCAAAAGGCGAGTC 59.401 50.000 0.00 0.00 39.39 3.36
2797 4569 2.839486 ACTCATCAAAAGGCGAGTCA 57.161 45.000 0.00 0.00 33.49 3.41
2798 4570 3.340814 ACTCATCAAAAGGCGAGTCAT 57.659 42.857 0.00 0.00 33.49 3.06
2799 4571 3.265791 ACTCATCAAAAGGCGAGTCATC 58.734 45.455 0.00 0.00 33.49 2.92
2800 4572 2.611292 CTCATCAAAAGGCGAGTCATCC 59.389 50.000 0.00 0.00 0.00 3.51
2801 4573 1.328680 CATCAAAAGGCGAGTCATCCG 59.671 52.381 0.00 0.00 0.00 4.18
2802 4574 0.320374 TCAAAAGGCGAGTCATCCGT 59.680 50.000 0.00 0.00 0.00 4.69
2803 4575 1.156736 CAAAAGGCGAGTCATCCGTT 58.843 50.000 0.00 0.00 0.00 4.44
2804 4576 1.535462 CAAAAGGCGAGTCATCCGTTT 59.465 47.619 6.54 6.54 35.06 3.60
2805 4577 1.439679 AAAGGCGAGTCATCCGTTTC 58.560 50.000 0.00 0.00 0.00 2.78
2806 4578 0.736325 AAGGCGAGTCATCCGTTTCG 60.736 55.000 0.00 0.00 36.23 3.46
2807 4579 1.153901 GGCGAGTCATCCGTTTCGA 60.154 57.895 0.00 0.00 35.19 3.71
2808 4580 0.734942 GGCGAGTCATCCGTTTCGAA 60.735 55.000 0.00 0.00 35.19 3.71
2809 4581 1.065358 GCGAGTCATCCGTTTCGAAA 58.935 50.000 6.47 6.47 35.19 3.46
2810 4582 1.458064 GCGAGTCATCCGTTTCGAAAA 59.542 47.619 13.10 0.00 35.19 2.29
2811 4583 2.096614 GCGAGTCATCCGTTTCGAAAAA 60.097 45.455 13.10 1.64 35.19 1.94
2859 4631 1.141053 ACAATTCACCTCCTATCGCCC 59.859 52.381 0.00 0.00 0.00 6.13
2872 4654 3.730761 CGCCCTTGAGTGCAGTGC 61.731 66.667 8.58 8.58 0.00 4.40
2888 4670 3.474570 GCAGACTCGGGGGCTCAT 61.475 66.667 0.00 0.00 0.00 2.90
2889 4671 2.818132 CAGACTCGGGGGCTCATC 59.182 66.667 0.00 0.00 0.00 2.92
2890 4672 2.835431 AGACTCGGGGGCTCATCG 60.835 66.667 0.00 0.00 0.00 3.84
2891 4673 2.833582 GACTCGGGGGCTCATCGA 60.834 66.667 1.44 1.44 0.00 3.59
2894 4676 2.043349 TCGGGGGCTCATCGAGAA 60.043 61.111 0.00 0.00 0.00 2.87
2895 4677 1.457643 TCGGGGGCTCATCGAGAAT 60.458 57.895 0.00 0.00 0.00 2.40
2897 4679 0.679505 CGGGGGCTCATCGAGAATAA 59.320 55.000 0.00 0.00 0.00 1.40
2993 4776 8.015185 AGTTGTAGGTTTCAAGTTCTACTACA 57.985 34.615 13.19 0.00 39.27 2.74
2994 4777 8.142551 AGTTGTAGGTTTCAAGTTCTACTACAG 58.857 37.037 13.19 0.00 39.97 2.74
2995 4778 7.592885 TGTAGGTTTCAAGTTCTACTACAGT 57.407 36.000 0.00 0.00 35.68 3.55
2996 4779 8.696043 TGTAGGTTTCAAGTTCTACTACAGTA 57.304 34.615 0.00 0.00 35.68 2.74
2997 4780 9.305555 TGTAGGTTTCAAGTTCTACTACAGTAT 57.694 33.333 0.00 0.00 35.68 2.12
3000 4783 8.747471 AGGTTTCAAGTTCTACTACAGTATACC 58.253 37.037 0.00 0.00 0.00 2.73
3001 4784 7.978414 GGTTTCAAGTTCTACTACAGTATACCC 59.022 40.741 0.00 0.00 0.00 3.69
3002 4785 6.932356 TCAAGTTCTACTACAGTATACCCG 57.068 41.667 0.00 0.00 0.00 5.28
3005 4788 8.046708 TCAAGTTCTACTACAGTATACCCGTAA 58.953 37.037 0.00 0.00 0.00 3.18
3007 4790 7.338710 AGTTCTACTACAGTATACCCGTAACA 58.661 38.462 0.00 0.00 0.00 2.41
3008 4791 7.497249 AGTTCTACTACAGTATACCCGTAACAG 59.503 40.741 0.00 2.70 0.00 3.16
3010 4793 7.338710 TCTACTACAGTATACCCGTAACAGTT 58.661 38.462 0.00 0.00 0.00 3.16
3091 4880 9.841295 GTGGATTTGATAAAACATAGGGTAGTA 57.159 33.333 0.00 0.00 0.00 1.82
3096 4885 7.281040 TGATAAAACATAGGGTAGTACGGAG 57.719 40.000 0.00 0.00 0.00 4.63
3098 4887 4.996788 AAACATAGGGTAGTACGGAGTG 57.003 45.455 0.00 0.00 45.73 3.51
3155 4945 6.090898 GTGTATTACAAGTGTAACAGGAGCAG 59.909 42.308 6.05 0.00 42.55 4.24
3157 4947 1.160137 CAAGTGTAACAGGAGCAGCC 58.840 55.000 0.00 0.00 41.43 4.85
3160 4950 0.602905 GTGTAACAGGAGCAGCCGTT 60.603 55.000 0.00 9.43 43.43 4.44
3167 4957 0.465460 AGGAGCAGCCGTTGACAAAA 60.465 50.000 0.00 0.00 43.43 2.44
3173 4963 2.351641 GCAGCCGTTGACAAAATGATCA 60.352 45.455 0.00 0.00 0.00 2.92
3174 4964 3.236816 CAGCCGTTGACAAAATGATCAC 58.763 45.455 0.00 0.00 0.00 3.06
3213 5003 4.612943 TCATGGCTTACCGAAAACAAAAC 58.387 39.130 0.00 0.00 39.70 2.43
3214 5004 3.067721 TGGCTTACCGAAAACAAAACG 57.932 42.857 0.00 0.00 39.70 3.60
3217 5007 2.466205 GCTTACCGAAAACAAAACGCAG 59.534 45.455 0.00 0.00 0.00 5.18
3242 5033 8.356657 AGACAAATCAGATAGTCCTATTTCTCG 58.643 37.037 10.76 0.00 0.00 4.04
3255 5046 2.910688 TTTCTCGGTCTTGCTGACTT 57.089 45.000 9.56 0.00 44.74 3.01
3256 5047 4.537135 ATTTCTCGGTCTTGCTGACTTA 57.463 40.909 9.56 0.05 44.74 2.24
3257 5048 4.330944 TTTCTCGGTCTTGCTGACTTAA 57.669 40.909 9.56 0.00 44.74 1.85
3277 5068 1.172812 GCTTCCACCGAGCCAAGTTT 61.173 55.000 0.00 0.00 34.06 2.66
3291 5082 6.178607 AGCCAAGTTTGAAAGGATTGAAAT 57.821 33.333 0.00 0.00 0.00 2.17
3307 5098 8.584157 AGGATTGAAATTTGTAGCACATTGTTA 58.416 29.630 0.00 0.00 0.00 2.41
3308 5099 8.647226 GGATTGAAATTTGTAGCACATTGTTAC 58.353 33.333 0.00 0.00 35.09 2.50
3311 5102 7.367285 TGAAATTTGTAGCACATTGTTACTCC 58.633 34.615 0.00 0.00 35.47 3.85
3312 5103 5.897377 ATTTGTAGCACATTGTTACTCCC 57.103 39.130 2.48 0.00 35.47 4.30
3314 5105 4.202245 TGTAGCACATTGTTACTCCCTC 57.798 45.455 2.48 0.00 35.47 4.30
3315 5106 3.580895 TGTAGCACATTGTTACTCCCTCA 59.419 43.478 2.48 0.00 35.47 3.86
3316 5107 3.788227 AGCACATTGTTACTCCCTCAA 57.212 42.857 0.00 0.00 0.00 3.02
3320 5111 5.539955 AGCACATTGTTACTCCCTCAAAAAT 59.460 36.000 0.00 0.00 0.00 1.82
3321 5112 6.719370 AGCACATTGTTACTCCCTCAAAAATA 59.281 34.615 0.00 0.00 0.00 1.40
3322 5113 7.232534 AGCACATTGTTACTCCCTCAAAAATAA 59.767 33.333 0.00 0.00 0.00 1.40
3323 5114 7.870445 GCACATTGTTACTCCCTCAAAAATAAA 59.130 33.333 0.00 0.00 0.00 1.40
3324 5115 9.927668 CACATTGTTACTCCCTCAAAAATAAAT 57.072 29.630 0.00 0.00 0.00 1.40
3352 5144 3.119849 ACGATGGCCTGAAAATCGAAAAG 60.120 43.478 24.41 0.96 44.57 2.27
3424 5216 1.142748 CCCGCACAACAGCCAAAAA 59.857 52.632 0.00 0.00 0.00 1.94
3461 5253 5.679638 GCAAAAGATGAATAAATCCGTGGCT 60.680 40.000 0.00 0.00 0.00 4.75
3495 5287 4.993945 CGAAGCGCACGCACACAC 62.994 66.667 18.24 2.79 44.88 3.82
3549 5342 1.479709 CACTCCACTCCGATTCCTCT 58.520 55.000 0.00 0.00 0.00 3.69
3553 5346 0.103208 CCACTCCGATTCCTCTTCCG 59.897 60.000 0.00 0.00 0.00 4.30
3559 5352 3.083997 ATTCCTCTTCCGCCGCCT 61.084 61.111 0.00 0.00 0.00 5.52
3629 5429 0.109412 CGCGAGGTTCGTTTCTAGGT 60.109 55.000 0.00 0.00 42.81 3.08
3650 5451 2.024414 CTCCGCTTAATTTCCCCCAAG 58.976 52.381 0.00 0.00 0.00 3.61
3728 5530 3.303397 ATTTCCGCGTGCGTTTCCG 62.303 57.895 13.70 0.00 37.81 4.30
3740 5542 1.065109 GTTTCCGCGCTTGTTTGGT 59.935 52.632 5.56 0.00 0.00 3.67
3825 5627 3.088641 ACTGAGTCAGCCCACAGTATGT 61.089 50.000 20.31 0.00 43.13 2.29
3855 5663 2.294979 ACGAACAGTGAGGTTTTTCCC 58.705 47.619 0.00 0.00 36.75 3.97
3898 5706 1.528586 CTCCTTGCAGTTTCGTCAGTG 59.471 52.381 0.00 0.00 0.00 3.66
3913 5721 1.169577 CAGTGTAGGAGTCTGACGCT 58.830 55.000 11.27 5.52 34.32 5.07
3916 5724 1.226435 GTAGGAGTCTGACGCTGCG 60.226 63.158 21.91 21.91 0.00 5.18
3920 5728 1.211969 GAGTCTGACGCTGCGGTTA 59.788 57.895 26.95 10.73 0.00 2.85
3921 5729 0.179134 GAGTCTGACGCTGCGGTTAT 60.179 55.000 26.95 4.54 0.00 1.89
3938 5746 3.483574 GGTTATCGAATGTGTTCTGCGTG 60.484 47.826 0.00 0.00 32.00 5.34
3939 5747 0.443869 ATCGAATGTGTTCTGCGTGC 59.556 50.000 0.00 0.00 32.00 5.34
3940 5748 1.507713 CGAATGTGTTCTGCGTGCG 60.508 57.895 0.00 0.00 32.00 5.34
3941 5749 1.569493 GAATGTGTTCTGCGTGCGT 59.431 52.632 0.00 0.00 0.00 5.24
3942 5750 0.787787 GAATGTGTTCTGCGTGCGTA 59.212 50.000 0.00 0.00 0.00 4.42
3943 5751 0.511221 AATGTGTTCTGCGTGCGTAC 59.489 50.000 0.00 0.00 0.00 3.67
3944 5752 0.598942 ATGTGTTCTGCGTGCGTACA 60.599 50.000 4.09 0.00 0.00 2.90
3945 5753 0.598942 TGTGTTCTGCGTGCGTACAT 60.599 50.000 4.09 0.00 0.00 2.29
3946 5754 0.179250 GTGTTCTGCGTGCGTACATG 60.179 55.000 4.09 0.00 35.78 3.21
3947 5755 0.319125 TGTTCTGCGTGCGTACATGA 60.319 50.000 4.09 0.00 34.49 3.07
3948 5756 0.787787 GTTCTGCGTGCGTACATGAA 59.212 50.000 4.09 1.93 34.49 2.57
3949 5757 1.067693 TTCTGCGTGCGTACATGAAG 58.932 50.000 4.09 0.00 39.57 3.02
3950 5758 0.038618 TCTGCGTGCGTACATGAAGT 60.039 50.000 4.09 0.00 39.28 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.142249 ACACAGCTGAAACCCTAAACAAAC 60.142 41.667 23.35 0.00 0.00 2.93
11 12 5.010012 CAGAAAATTACACAGCTGAAACCCT 59.990 40.000 23.35 0.00 0.00 4.34
23 24 7.912250 CAGGAATAGCATGACAGAAAATTACAC 59.088 37.037 0.00 0.00 0.00 2.90
24 25 7.415541 GCAGGAATAGCATGACAGAAAATTACA 60.416 37.037 0.00 0.00 0.00 2.41
25 26 6.914757 GCAGGAATAGCATGACAGAAAATTAC 59.085 38.462 0.00 0.00 0.00 1.89
26 27 6.039717 GGCAGGAATAGCATGACAGAAAATTA 59.960 38.462 0.00 0.00 36.02 1.40
51 53 7.934120 ACAGGATAACTAGCTAATAAAAGCAGG 59.066 37.037 0.00 0.00 45.30 4.85
65 67 9.823647 AATGATCAACAGTTACAGGATAACTAG 57.176 33.333 0.00 0.00 36.14 2.57
244 246 5.470368 GTGCGCAATTCTATCTATGGACTA 58.530 41.667 14.00 0.00 0.00 2.59
275 277 3.634910 GACAGCAAACTTAGGGGTTTCAA 59.365 43.478 0.00 0.00 37.32 2.69
306 312 2.234908 ACACACTGCTAGATCAGAACCC 59.765 50.000 4.57 0.00 37.51 4.11
332 338 4.255510 AGGGTATGCATCAATCAAAGGT 57.744 40.909 0.19 0.00 0.00 3.50
333 339 4.520492 GGTAGGGTATGCATCAATCAAAGG 59.480 45.833 0.19 0.00 0.00 3.11
377 383 3.389983 ACACTACACAGTACATTGGGTGT 59.610 43.478 15.32 15.32 45.57 4.16
391 397 3.939066 AGTTTGCCAGGATACACTACAC 58.061 45.455 0.00 0.00 41.41 2.90
453 459 2.526688 CGTAAGCTGTCGATTCTTCGTC 59.473 50.000 5.07 0.00 45.65 4.20
604 614 6.688637 ATACAGTACAGAATACACTACGCA 57.311 37.500 0.00 0.00 0.00 5.24
607 617 7.222224 GCCACAATACAGTACAGAATACACTAC 59.778 40.741 0.00 0.00 0.00 2.73
615 625 3.751175 GCTTGCCACAATACAGTACAGAA 59.249 43.478 0.00 0.00 0.00 3.02
674 692 5.610132 AGTCCTTGGACTCATAATCCATGAT 59.390 40.000 15.93 0.00 45.71 2.45
675 693 4.971282 AGTCCTTGGACTCATAATCCATGA 59.029 41.667 15.93 0.43 45.71 3.07
676 694 5.301835 AGTCCTTGGACTCATAATCCATG 57.698 43.478 15.93 0.00 45.71 3.66
677 695 6.146760 ACTAGTCCTTGGACTCATAATCCAT 58.853 40.000 23.80 1.41 45.71 3.41
678 696 5.529289 ACTAGTCCTTGGACTCATAATCCA 58.471 41.667 23.80 5.22 44.74 3.41
679 697 5.598830 TGACTAGTCCTTGGACTCATAATCC 59.401 44.000 23.80 9.47 36.68 3.01
680 698 6.716934 TGACTAGTCCTTGGACTCATAATC 57.283 41.667 23.80 15.30 36.68 1.75
681 699 6.897966 TCTTGACTAGTCCTTGGACTCATAAT 59.102 38.462 23.80 7.96 36.68 1.28
682 700 6.153000 GTCTTGACTAGTCCTTGGACTCATAA 59.847 42.308 23.80 14.21 36.68 1.90
683 701 5.652891 GTCTTGACTAGTCCTTGGACTCATA 59.347 44.000 23.80 7.93 36.68 2.15
684 702 4.464597 GTCTTGACTAGTCCTTGGACTCAT 59.535 45.833 23.80 14.13 36.68 2.90
685 703 3.827302 GTCTTGACTAGTCCTTGGACTCA 59.173 47.826 23.80 14.30 36.68 3.41
686 704 4.083565 AGTCTTGACTAGTCCTTGGACTC 58.916 47.826 23.80 12.05 36.68 3.36
687 705 4.120946 AGTCTTGACTAGTCCTTGGACT 57.879 45.455 23.63 23.63 39.08 3.85
688 706 5.570234 CTAGTCTTGACTAGTCCTTGGAC 57.430 47.826 22.76 19.06 36.01 4.02
717 735 1.346068 GTCAGCCTTGGAGTTGAGACT 59.654 52.381 0.00 0.00 39.32 3.24
718 736 1.346068 AGTCAGCCTTGGAGTTGAGAC 59.654 52.381 0.00 0.00 0.00 3.36
719 737 1.722034 AGTCAGCCTTGGAGTTGAGA 58.278 50.000 0.00 0.00 0.00 3.27
720 738 2.300152 TGTAGTCAGCCTTGGAGTTGAG 59.700 50.000 0.00 0.00 0.00 3.02
721 739 2.037251 GTGTAGTCAGCCTTGGAGTTGA 59.963 50.000 0.00 0.00 0.00 3.18
722 740 2.037772 AGTGTAGTCAGCCTTGGAGTTG 59.962 50.000 0.00 0.00 0.00 3.16
723 741 2.330216 AGTGTAGTCAGCCTTGGAGTT 58.670 47.619 0.00 0.00 0.00 3.01
724 742 2.016905 AGTGTAGTCAGCCTTGGAGT 57.983 50.000 0.00 0.00 0.00 3.85
725 743 2.300152 TGAAGTGTAGTCAGCCTTGGAG 59.700 50.000 0.00 0.00 0.00 3.86
726 744 2.300152 CTGAAGTGTAGTCAGCCTTGGA 59.700 50.000 0.00 0.00 36.38 3.53
727 745 2.037772 ACTGAAGTGTAGTCAGCCTTGG 59.962 50.000 1.41 0.00 45.35 3.61
728 746 3.062763 CACTGAAGTGTAGTCAGCCTTG 58.937 50.000 2.14 0.00 45.35 3.61
729 747 3.393089 CACTGAAGTGTAGTCAGCCTT 57.607 47.619 2.14 0.00 45.35 4.35
741 759 6.717540 ACTCATAGACTAGTCAACACTGAAGT 59.282 38.462 24.44 12.61 33.62 3.01
742 760 7.151999 ACTCATAGACTAGTCAACACTGAAG 57.848 40.000 24.44 12.06 33.62 3.02
743 761 6.128254 CGACTCATAGACTAGTCAACACTGAA 60.128 42.308 24.44 1.41 41.83 3.02
744 762 5.351740 CGACTCATAGACTAGTCAACACTGA 59.648 44.000 24.44 16.08 41.83 3.41
745 763 5.564768 CGACTCATAGACTAGTCAACACTG 58.435 45.833 24.44 13.11 41.83 3.66
746 764 4.095185 GCGACTCATAGACTAGTCAACACT 59.905 45.833 24.44 6.24 41.83 3.55
747 765 4.142665 TGCGACTCATAGACTAGTCAACAC 60.143 45.833 24.44 8.14 41.83 3.32
748 766 4.007659 TGCGACTCATAGACTAGTCAACA 58.992 43.478 24.44 9.71 41.83 3.33
749 767 4.617808 TGCGACTCATAGACTAGTCAAC 57.382 45.455 24.44 0.00 41.83 3.18
750 768 5.638596 TTTGCGACTCATAGACTAGTCAA 57.361 39.130 24.44 4.08 41.83 3.18
751 769 5.638596 TTTTGCGACTCATAGACTAGTCA 57.361 39.130 24.44 11.06 41.83 3.41
774 792 7.063074 CGTGATTAATCGACACTAGTCCTTTTT 59.937 37.037 10.80 0.00 41.87 1.94
775 793 6.530534 CGTGATTAATCGACACTAGTCCTTTT 59.469 38.462 10.80 0.00 41.87 2.27
776 794 6.034591 CGTGATTAATCGACACTAGTCCTTT 58.965 40.000 10.80 0.00 41.87 3.11
777 795 5.356190 TCGTGATTAATCGACACTAGTCCTT 59.644 40.000 10.80 0.00 41.87 3.36
778 796 4.880120 TCGTGATTAATCGACACTAGTCCT 59.120 41.667 10.80 0.00 41.87 3.85
779 797 5.165911 TCGTGATTAATCGACACTAGTCC 57.834 43.478 10.80 0.00 41.87 3.85
780 798 8.068977 ACTAATCGTGATTAATCGACACTAGTC 58.931 37.037 10.80 0.00 38.85 2.59
781 799 7.928103 ACTAATCGTGATTAATCGACACTAGT 58.072 34.615 10.80 10.89 38.85 2.57
782 800 8.283992 AGACTAATCGTGATTAATCGACACTAG 58.716 37.037 10.80 10.36 35.40 2.57
783 801 8.151141 AGACTAATCGTGATTAATCGACACTA 57.849 34.615 10.80 0.00 35.40 2.74
784 802 7.028926 AGACTAATCGTGATTAATCGACACT 57.971 36.000 10.80 0.00 35.40 3.55
785 803 7.058128 CGTAGACTAATCGTGATTAATCGACAC 59.942 40.741 17.89 11.21 36.00 3.67
786 804 7.042523 TCGTAGACTAATCGTGATTAATCGACA 60.043 37.037 17.89 7.91 36.00 4.35
787 805 7.286508 TCGTAGACTAATCGTGATTAATCGAC 58.713 38.462 10.80 11.70 35.40 4.20
788 806 7.170489 ACTCGTAGACTAATCGTGATTAATCGA 59.830 37.037 10.80 6.36 35.40 3.59
789 807 7.289395 ACTCGTAGACTAATCGTGATTAATCG 58.711 38.462 10.80 0.71 35.40 3.34
790 808 8.497554 AGACTCGTAGACTAATCGTGATTAATC 58.502 37.037 8.60 8.60 33.34 1.75
791 809 8.380743 AGACTCGTAGACTAATCGTGATTAAT 57.619 34.615 4.07 0.00 33.34 1.40
792 810 7.493645 TGAGACTCGTAGACTAATCGTGATTAA 59.506 37.037 4.07 0.00 33.34 1.40
793 811 6.982724 TGAGACTCGTAGACTAATCGTGATTA 59.017 38.462 0.00 2.58 32.50 1.75
794 812 5.816258 TGAGACTCGTAGACTAATCGTGATT 59.184 40.000 0.00 0.22 34.93 2.57
795 813 5.358090 TGAGACTCGTAGACTAATCGTGAT 58.642 41.667 0.00 0.00 0.00 3.06
796 814 4.752146 TGAGACTCGTAGACTAATCGTGA 58.248 43.478 0.00 0.00 0.00 4.35
797 815 5.063691 AGTTGAGACTCGTAGACTAATCGTG 59.936 44.000 0.00 0.00 0.00 4.35
798 816 5.177326 AGTTGAGACTCGTAGACTAATCGT 58.823 41.667 0.00 0.00 0.00 3.73
799 817 5.721876 AGTTGAGACTCGTAGACTAATCG 57.278 43.478 0.00 0.00 0.00 3.34
800 818 6.186785 CGAAGTTGAGACTCGTAGACTAATC 58.813 44.000 0.00 0.00 34.21 1.75
801 819 5.064962 CCGAAGTTGAGACTCGTAGACTAAT 59.935 44.000 0.00 0.00 34.21 1.73
802 820 4.391216 CCGAAGTTGAGACTCGTAGACTAA 59.609 45.833 0.00 0.00 34.21 2.24
803 821 3.931468 CCGAAGTTGAGACTCGTAGACTA 59.069 47.826 0.00 0.00 34.21 2.59
804 822 2.743126 CCGAAGTTGAGACTCGTAGACT 59.257 50.000 0.00 0.00 34.21 3.24
805 823 2.740981 TCCGAAGTTGAGACTCGTAGAC 59.259 50.000 0.00 0.00 34.21 2.59
806 824 3.049708 TCCGAAGTTGAGACTCGTAGA 57.950 47.619 0.00 0.00 34.21 2.59
807 825 3.490399 GTTCCGAAGTTGAGACTCGTAG 58.510 50.000 0.00 0.00 34.21 3.51
808 826 2.096069 CGTTCCGAAGTTGAGACTCGTA 60.096 50.000 0.00 0.00 34.21 3.43
809 827 1.334779 CGTTCCGAAGTTGAGACTCGT 60.335 52.381 0.00 0.00 34.21 4.18
810 828 1.069432 TCGTTCCGAAGTTGAGACTCG 60.069 52.381 0.00 0.00 34.21 4.18
811 829 2.701073 TCGTTCCGAAGTTGAGACTC 57.299 50.000 0.00 0.00 34.21 3.36
812 830 3.576648 GAATCGTTCCGAAGTTGAGACT 58.423 45.455 0.00 0.00 39.99 3.24
813 831 2.341760 CGAATCGTTCCGAAGTTGAGAC 59.658 50.000 0.00 0.00 39.99 3.36
814 832 2.030540 ACGAATCGTTCCGAAGTTGAGA 60.031 45.455 0.96 0.00 39.99 3.27
815 833 2.325761 ACGAATCGTTCCGAAGTTGAG 58.674 47.619 0.96 0.00 39.99 3.02
816 834 2.322161 GACGAATCGTTCCGAAGTTGA 58.678 47.619 10.45 0.00 41.37 3.18
817 835 1.057285 CGACGAATCGTTCCGAAGTTG 59.943 52.381 10.45 0.00 43.66 3.16
818 836 1.334054 CGACGAATCGTTCCGAAGTT 58.666 50.000 10.45 0.00 43.66 2.66
819 837 3.011513 CGACGAATCGTTCCGAAGT 57.988 52.632 10.45 0.00 43.66 3.01
829 847 3.128465 AGGTTTACGAGTCGACGAATC 57.872 47.619 21.50 14.96 37.03 2.52
830 848 3.058016 TCAAGGTTTACGAGTCGACGAAT 60.058 43.478 21.50 0.00 37.03 3.34
831 849 2.290367 TCAAGGTTTACGAGTCGACGAA 59.710 45.455 21.50 7.35 37.03 3.85
832 850 1.872952 TCAAGGTTTACGAGTCGACGA 59.127 47.619 21.50 0.00 37.03 4.20
833 851 2.320805 TCAAGGTTTACGAGTCGACG 57.679 50.000 21.50 1.24 39.31 5.12
834 852 7.699812 AGTTATAATCAAGGTTTACGAGTCGAC 59.300 37.037 21.50 7.70 0.00 4.20
835 853 7.765307 AGTTATAATCAAGGTTTACGAGTCGA 58.235 34.615 21.50 0.00 0.00 4.20
836 854 7.699391 TGAGTTATAATCAAGGTTTACGAGTCG 59.301 37.037 11.85 11.85 0.00 4.18
837 855 8.805688 GTGAGTTATAATCAAGGTTTACGAGTC 58.194 37.037 0.00 0.00 0.00 3.36
838 856 8.308931 TGTGAGTTATAATCAAGGTTTACGAGT 58.691 33.333 0.00 0.00 0.00 4.18
839 857 8.697846 TGTGAGTTATAATCAAGGTTTACGAG 57.302 34.615 0.00 0.00 0.00 4.18
840 858 9.093970 CATGTGAGTTATAATCAAGGTTTACGA 57.906 33.333 0.00 0.00 0.00 3.43
841 859 9.093970 TCATGTGAGTTATAATCAAGGTTTACG 57.906 33.333 0.00 0.00 0.00 3.18
844 862 9.739276 TCTTCATGTGAGTTATAATCAAGGTTT 57.261 29.630 0.00 0.00 0.00 3.27
845 863 9.739276 TTCTTCATGTGAGTTATAATCAAGGTT 57.261 29.630 0.00 0.00 0.00 3.50
846 864 9.911788 ATTCTTCATGTGAGTTATAATCAAGGT 57.088 29.630 0.00 0.00 0.00 3.50
849 867 9.045223 CCGATTCTTCATGTGAGTTATAATCAA 57.955 33.333 0.00 0.00 0.00 2.57
850 868 7.171508 GCCGATTCTTCATGTGAGTTATAATCA 59.828 37.037 0.00 0.00 0.00 2.57
851 869 7.171508 TGCCGATTCTTCATGTGAGTTATAATC 59.828 37.037 0.00 0.00 0.00 1.75
852 870 6.992123 TGCCGATTCTTCATGTGAGTTATAAT 59.008 34.615 0.00 0.00 0.00 1.28
853 871 6.345298 TGCCGATTCTTCATGTGAGTTATAA 58.655 36.000 0.00 0.00 0.00 0.98
854 872 5.912892 TGCCGATTCTTCATGTGAGTTATA 58.087 37.500 0.00 0.00 0.00 0.98
855 873 4.769688 TGCCGATTCTTCATGTGAGTTAT 58.230 39.130 0.00 0.00 0.00 1.89
856 874 4.183865 CTGCCGATTCTTCATGTGAGTTA 58.816 43.478 0.00 0.00 0.00 2.24
875 893 5.678483 CACATTATTCATCAGCGTAAACTGC 59.322 40.000 0.00 0.00 37.59 4.40
879 897 6.345298 TCTCCACATTATTCATCAGCGTAAA 58.655 36.000 0.00 0.00 0.00 2.01
1120 1181 0.250338 GCAAACGGAGACTTGGAGGT 60.250 55.000 0.00 0.00 0.00 3.85
1194 1258 4.814147 CAGACTTGTCAGCAGTCTCATTA 58.186 43.478 4.49 0.00 40.50 1.90
1226 1290 3.562108 AAGAAAGGGACTCTGGGAGTA 57.438 47.619 0.00 0.00 43.53 2.59
1320 1384 0.739813 GATTACCCGCGTGACTTGCT 60.740 55.000 4.92 0.00 0.00 3.91
1431 1498 5.239525 GGAAAGCATATCAATGGTGAGTACC 59.760 44.000 0.00 0.00 42.93 3.34
1480 1547 8.956426 CACCATAAAAATAATCAGTGTACTGGT 58.044 33.333 11.76 1.85 43.91 4.00
1524 1591 4.455877 GCTTGCACAGAAAACTAGGTACAT 59.544 41.667 0.00 0.00 0.00 2.29
1588 1655 0.036010 GGCTGTGCTTTGGCTAGAGA 60.036 55.000 0.00 0.00 39.59 3.10
1589 1656 0.321919 TGGCTGTGCTTTGGCTAGAG 60.322 55.000 0.00 0.00 39.59 2.43
1648 1715 4.386711 TCAGCATGGAAGATCATTAGCAG 58.613 43.478 0.00 0.00 36.16 4.24
1681 1748 2.153645 ACATTGTCATCAGCTTCGCAA 58.846 42.857 0.00 0.00 0.00 4.85
1728 1795 5.731591 AGGTTTGCACATAAGACTAGGTAC 58.268 41.667 0.00 0.00 0.00 3.34
1810 1877 8.986477 AAATGGTTTCAGCTAATGATGTTTAC 57.014 30.769 0.00 0.00 37.89 2.01
1815 1882 7.092137 TGAGAAATGGTTTCAGCTAATGATG 57.908 36.000 5.36 0.00 42.10 3.07
1816 1883 7.893124 ATGAGAAATGGTTTCAGCTAATGAT 57.107 32.000 5.36 0.00 42.10 2.45
1817 1884 7.541162 CAATGAGAAATGGTTTCAGCTAATGA 58.459 34.615 5.36 0.00 42.10 2.57
1818 1885 6.255020 GCAATGAGAAATGGTTTCAGCTAATG 59.745 38.462 5.36 0.00 42.10 1.90
1819 1886 6.154021 AGCAATGAGAAATGGTTTCAGCTAAT 59.846 34.615 5.36 0.00 42.10 1.73
1820 1887 5.477984 AGCAATGAGAAATGGTTTCAGCTAA 59.522 36.000 5.36 0.00 42.10 3.09
1821 1888 5.012239 AGCAATGAGAAATGGTTTCAGCTA 58.988 37.500 5.36 0.00 42.10 3.32
1822 1889 3.830755 AGCAATGAGAAATGGTTTCAGCT 59.169 39.130 5.36 0.00 42.10 4.24
1823 1890 4.184079 AGCAATGAGAAATGGTTTCAGC 57.816 40.909 5.36 0.00 42.10 4.26
1824 1891 7.541162 TCATTAGCAATGAGAAATGGTTTCAG 58.459 34.615 7.27 0.00 42.69 3.02
1825 1892 7.465353 TCATTAGCAATGAGAAATGGTTTCA 57.535 32.000 7.27 0.00 42.69 2.69
1836 1903 8.649733 TCAGCATGGAAGATCATTAGCAATGAG 61.650 40.741 14.16 3.48 43.74 2.90
1837 1904 6.914108 TCAGCATGGAAGATCATTAGCAATGA 60.914 38.462 12.06 12.06 44.27 2.57
1838 1905 5.240844 TCAGCATGGAAGATCATTAGCAATG 59.759 40.000 0.00 3.36 37.12 2.82
1839 1906 5.382616 TCAGCATGGAAGATCATTAGCAAT 58.617 37.500 0.00 0.00 36.16 3.56
1840 1907 4.784177 TCAGCATGGAAGATCATTAGCAA 58.216 39.130 0.00 0.00 36.16 3.91
1841 1908 4.386711 CTCAGCATGGAAGATCATTAGCA 58.613 43.478 0.00 0.00 36.16 3.49
1842 1909 3.188873 GCTCAGCATGGAAGATCATTAGC 59.811 47.826 0.00 0.00 36.16 3.09
1843 1910 4.643463 AGCTCAGCATGGAAGATCATTAG 58.357 43.478 0.00 0.00 36.16 1.73
1844 1911 4.504514 GGAGCTCAGCATGGAAGATCATTA 60.505 45.833 17.19 0.00 36.16 1.90
1845 1912 3.478509 GAGCTCAGCATGGAAGATCATT 58.521 45.455 9.40 0.00 36.16 2.57
1846 1913 2.224572 GGAGCTCAGCATGGAAGATCAT 60.225 50.000 17.19 0.00 36.16 2.45
1847 1914 1.140452 GGAGCTCAGCATGGAAGATCA 59.860 52.381 17.19 0.00 36.16 2.92
1848 1915 1.542987 GGGAGCTCAGCATGGAAGATC 60.543 57.143 17.19 0.00 36.16 2.75
1849 1916 0.473326 GGGAGCTCAGCATGGAAGAT 59.527 55.000 17.19 0.00 36.16 2.40
1850 1917 0.619832 AGGGAGCTCAGCATGGAAGA 60.620 55.000 17.19 0.00 36.16 2.87
1851 1918 0.255318 AAGGGAGCTCAGCATGGAAG 59.745 55.000 17.19 0.00 36.16 3.46
1852 1919 0.254178 GAAGGGAGCTCAGCATGGAA 59.746 55.000 17.19 0.00 36.16 3.53
1853 1920 1.910722 GAAGGGAGCTCAGCATGGA 59.089 57.895 17.19 0.00 36.16 3.41
1854 1921 1.523258 CGAAGGGAGCTCAGCATGG 60.523 63.158 17.19 0.00 36.16 3.66
1855 1922 4.121691 CGAAGGGAGCTCAGCATG 57.878 61.111 17.19 0.00 37.54 4.06
1869 1936 1.014044 GTCATCAGCTTCGCACCGAA 61.014 55.000 0.00 0.00 43.75 4.30
1870 1937 1.446099 GTCATCAGCTTCGCACCGA 60.446 57.895 0.00 0.00 0.00 4.69
1871 1938 1.291184 TTGTCATCAGCTTCGCACCG 61.291 55.000 0.00 0.00 0.00 4.94
1872 1939 1.089920 ATTGTCATCAGCTTCGCACC 58.910 50.000 0.00 0.00 0.00 5.01
1873 1940 1.466167 ACATTGTCATCAGCTTCGCAC 59.534 47.619 0.00 0.00 0.00 5.34
1874 1941 1.812235 ACATTGTCATCAGCTTCGCA 58.188 45.000 0.00 0.00 0.00 5.10
1875 1942 2.907910 AACATTGTCATCAGCTTCGC 57.092 45.000 0.00 0.00 0.00 4.70
1876 1943 4.333649 ACCATAACATTGTCATCAGCTTCG 59.666 41.667 0.00 0.00 0.00 3.79
1877 1944 5.124457 ACACCATAACATTGTCATCAGCTTC 59.876 40.000 0.00 0.00 0.00 3.86
1878 1945 5.012239 ACACCATAACATTGTCATCAGCTT 58.988 37.500 0.00 0.00 0.00 3.74
1879 1946 4.592942 ACACCATAACATTGTCATCAGCT 58.407 39.130 0.00 0.00 0.00 4.24
1880 1947 4.637534 AGACACCATAACATTGTCATCAGC 59.362 41.667 3.95 0.00 41.83 4.26
1881 1948 6.403964 CCAAGACACCATAACATTGTCATCAG 60.404 42.308 3.95 0.00 41.83 2.90
1882 1949 5.415389 CCAAGACACCATAACATTGTCATCA 59.585 40.000 3.95 0.00 41.83 3.07
1883 1950 5.415701 ACCAAGACACCATAACATTGTCATC 59.584 40.000 3.95 0.00 41.83 2.92
1884 1951 5.183713 CACCAAGACACCATAACATTGTCAT 59.816 40.000 3.95 0.00 41.83 3.06
1885 1952 4.518590 CACCAAGACACCATAACATTGTCA 59.481 41.667 3.95 0.00 41.83 3.58
1886 1953 4.615912 GCACCAAGACACCATAACATTGTC 60.616 45.833 0.00 0.00 40.04 3.18
1887 1954 3.255642 GCACCAAGACACCATAACATTGT 59.744 43.478 0.00 0.00 0.00 2.71
1888 1955 3.255395 TGCACCAAGACACCATAACATTG 59.745 43.478 0.00 0.00 0.00 2.82
1889 1956 3.495331 TGCACCAAGACACCATAACATT 58.505 40.909 0.00 0.00 0.00 2.71
1890 1957 3.153369 TGCACCAAGACACCATAACAT 57.847 42.857 0.00 0.00 0.00 2.71
1891 1958 2.647683 TGCACCAAGACACCATAACA 57.352 45.000 0.00 0.00 0.00 2.41
1892 1959 4.941263 TCTAATGCACCAAGACACCATAAC 59.059 41.667 0.00 0.00 0.00 1.89
1893 1960 5.172687 TCTAATGCACCAAGACACCATAA 57.827 39.130 0.00 0.00 0.00 1.90
1894 1961 4.835284 TCTAATGCACCAAGACACCATA 57.165 40.909 0.00 0.00 0.00 2.74
1895 1962 3.719268 TCTAATGCACCAAGACACCAT 57.281 42.857 0.00 0.00 0.00 3.55
1896 1963 3.719268 ATCTAATGCACCAAGACACCA 57.281 42.857 0.00 0.00 0.00 4.17
1897 1964 4.265073 AGAATCTAATGCACCAAGACACC 58.735 43.478 0.00 0.00 0.00 4.16
1898 1965 5.886960 AAGAATCTAATGCACCAAGACAC 57.113 39.130 0.00 0.00 0.00 3.67
1899 1966 6.374333 GGTAAAGAATCTAATGCACCAAGACA 59.626 38.462 0.00 0.00 0.00 3.41
1900 1967 6.599638 AGGTAAAGAATCTAATGCACCAAGAC 59.400 38.462 0.00 0.00 0.00 3.01
1901 1968 6.721318 AGGTAAAGAATCTAATGCACCAAGA 58.279 36.000 0.00 0.00 0.00 3.02
1902 1969 7.770897 ACTAGGTAAAGAATCTAATGCACCAAG 59.229 37.037 0.00 0.00 0.00 3.61
1903 1970 7.630082 ACTAGGTAAAGAATCTAATGCACCAA 58.370 34.615 0.00 0.00 0.00 3.67
1904 1971 7.125811 AGACTAGGTAAAGAATCTAATGCACCA 59.874 37.037 0.00 0.00 0.00 4.17
1905 1972 7.501844 AGACTAGGTAAAGAATCTAATGCACC 58.498 38.462 0.00 0.00 0.00 5.01
1906 1973 8.950208 AAGACTAGGTAAAGAATCTAATGCAC 57.050 34.615 0.00 0.00 0.00 4.57
1912 1979 9.197306 TGCACATAAGACTAGGTAAAGAATCTA 57.803 33.333 0.00 0.00 0.00 1.98
1913 1980 8.079211 TGCACATAAGACTAGGTAAAGAATCT 57.921 34.615 0.00 0.00 0.00 2.40
1914 1981 8.718102 TTGCACATAAGACTAGGTAAAGAATC 57.282 34.615 0.00 0.00 0.00 2.52
1915 1982 8.947115 GTTTGCACATAAGACTAGGTAAAGAAT 58.053 33.333 0.00 0.00 0.00 2.40
1916 1983 7.389607 GGTTTGCACATAAGACTAGGTAAAGAA 59.610 37.037 0.00 0.00 0.00 2.52
1917 1984 6.877322 GGTTTGCACATAAGACTAGGTAAAGA 59.123 38.462 0.00 0.00 0.00 2.52
1918 1985 6.879458 AGGTTTGCACATAAGACTAGGTAAAG 59.121 38.462 0.00 0.00 0.00 1.85
1919 1986 6.775708 AGGTTTGCACATAAGACTAGGTAAA 58.224 36.000 0.00 0.00 0.00 2.01
1920 1987 6.368779 AGGTTTGCACATAAGACTAGGTAA 57.631 37.500 0.00 0.00 0.00 2.85
1921 1988 6.170506 CAAGGTTTGCACATAAGACTAGGTA 58.829 40.000 0.00 0.00 0.00 3.08
1922 1989 4.910458 AGGTTTGCACATAAGACTAGGT 57.090 40.909 0.00 0.00 0.00 3.08
1923 1990 5.003804 ACAAGGTTTGCACATAAGACTAGG 58.996 41.667 0.00 0.00 0.00 3.02
1924 1991 6.183360 GCTACAAGGTTTGCACATAAGACTAG 60.183 42.308 0.00 0.00 0.00 2.57
1925 1992 5.642063 GCTACAAGGTTTGCACATAAGACTA 59.358 40.000 0.00 0.00 0.00 2.59
1926 1993 4.455877 GCTACAAGGTTTGCACATAAGACT 59.544 41.667 0.00 0.00 0.00 3.24
1927 1994 4.455877 AGCTACAAGGTTTGCACATAAGAC 59.544 41.667 0.00 0.00 0.00 3.01
1928 1995 4.455533 CAGCTACAAGGTTTGCACATAAGA 59.544 41.667 0.00 0.00 0.00 2.10
1929 1996 4.455533 TCAGCTACAAGGTTTGCACATAAG 59.544 41.667 0.00 0.00 0.00 1.73
1930 1997 4.393834 TCAGCTACAAGGTTTGCACATAA 58.606 39.130 0.00 0.00 0.00 1.90
1931 1998 4.014569 TCAGCTACAAGGTTTGCACATA 57.985 40.909 0.00 0.00 0.00 2.29
1932 1999 2.862541 TCAGCTACAAGGTTTGCACAT 58.137 42.857 0.00 0.00 0.00 3.21
1933 2000 2.340210 TCAGCTACAAGGTTTGCACA 57.660 45.000 0.00 0.00 0.00 4.57
1934 2001 3.253188 TGATTCAGCTACAAGGTTTGCAC 59.747 43.478 0.00 0.00 0.00 4.57
1935 2002 3.485394 TGATTCAGCTACAAGGTTTGCA 58.515 40.909 0.00 0.00 0.00 4.08
1936 2003 4.229876 GTTGATTCAGCTACAAGGTTTGC 58.770 43.478 0.00 0.00 0.00 3.68
1937 2004 5.437289 TGTTGATTCAGCTACAAGGTTTG 57.563 39.130 2.11 0.00 0.00 2.93
1938 2005 5.769662 TGATGTTGATTCAGCTACAAGGTTT 59.230 36.000 2.11 0.00 0.00 3.27
1939 2006 5.316167 TGATGTTGATTCAGCTACAAGGTT 58.684 37.500 2.11 0.00 0.00 3.50
1940 2007 4.910195 TGATGTTGATTCAGCTACAAGGT 58.090 39.130 2.11 0.00 0.00 3.50
1941 2008 5.356190 ACATGATGTTGATTCAGCTACAAGG 59.644 40.000 0.00 2.99 0.00 3.61
1942 2009 6.432607 ACATGATGTTGATTCAGCTACAAG 57.567 37.500 0.00 2.75 0.00 3.16
1943 2010 6.822667 AACATGATGTTGATTCAGCTACAA 57.177 33.333 10.45 0.00 39.45 2.41
1944 2011 6.822667 AAACATGATGTTGATTCAGCTACA 57.177 33.333 12.09 0.00 40.14 2.74
1968 2035 4.700213 GCTGTGTTCTGCTATAGGGAAAAA 59.300 41.667 1.04 0.00 35.98 1.94
1969 2036 4.261801 GCTGTGTTCTGCTATAGGGAAAA 58.738 43.478 1.04 0.00 35.98 2.29
1970 2037 3.370527 GGCTGTGTTCTGCTATAGGGAAA 60.371 47.826 1.04 0.00 38.34 3.13
1971 2038 2.170607 GGCTGTGTTCTGCTATAGGGAA 59.829 50.000 1.04 0.00 38.34 3.97
1972 2039 1.762957 GGCTGTGTTCTGCTATAGGGA 59.237 52.381 1.04 0.00 38.34 4.20
1973 2040 1.486310 TGGCTGTGTTCTGCTATAGGG 59.514 52.381 1.04 0.00 38.34 3.53
1974 2041 2.988010 TGGCTGTGTTCTGCTATAGG 57.012 50.000 1.04 0.00 38.34 2.57
1975 2042 3.003068 GCAATGGCTGTGTTCTGCTATAG 59.997 47.826 0.00 0.00 38.34 1.31
1976 2043 2.945008 GCAATGGCTGTGTTCTGCTATA 59.055 45.455 0.00 0.00 38.34 1.31
1977 2044 1.747355 GCAATGGCTGTGTTCTGCTAT 59.253 47.619 0.00 0.00 40.20 2.97
1978 2045 1.167851 GCAATGGCTGTGTTCTGCTA 58.832 50.000 0.00 0.00 38.34 3.49
1979 2046 1.530013 GGCAATGGCTGTGTTCTGCT 61.530 55.000 0.00 0.00 40.87 4.24
1980 2047 1.080298 GGCAATGGCTGTGTTCTGC 60.080 57.895 0.00 0.00 40.87 4.26
1981 2048 0.892755 ATGGCAATGGCTGTGTTCTG 59.107 50.000 8.59 0.00 40.87 3.02
1982 2049 1.180029 GATGGCAATGGCTGTGTTCT 58.820 50.000 8.59 0.00 40.87 3.01
1983 2050 1.135199 CAGATGGCAATGGCTGTGTTC 60.135 52.381 8.59 0.00 40.87 3.18
1984 2051 0.892755 CAGATGGCAATGGCTGTGTT 59.107 50.000 8.59 0.00 40.87 3.32
1985 2052 0.251474 ACAGATGGCAATGGCTGTGT 60.251 50.000 8.59 5.94 39.88 3.72
1986 2053 1.753930 TACAGATGGCAATGGCTGTG 58.246 50.000 19.23 5.31 41.31 3.66
1987 2054 2.493278 GTTTACAGATGGCAATGGCTGT 59.507 45.455 8.59 16.14 43.40 4.40
1988 2055 2.492881 TGTTTACAGATGGCAATGGCTG 59.507 45.455 8.59 0.34 40.87 4.85
1989 2056 2.806434 TGTTTACAGATGGCAATGGCT 58.194 42.857 8.59 0.00 40.87 4.75
1990 2057 3.130869 TGATGTTTACAGATGGCAATGGC 59.869 43.478 0.00 0.00 40.13 4.40
1991 2058 4.987408 TGATGTTTACAGATGGCAATGG 57.013 40.909 7.82 0.00 0.00 3.16
1992 2059 7.709947 ACTAATGATGTTTACAGATGGCAATG 58.290 34.615 0.00 0.00 0.00 2.82
1993 2060 7.886629 ACTAATGATGTTTACAGATGGCAAT 57.113 32.000 0.00 0.00 0.00 3.56
1994 2061 7.392953 TCAACTAATGATGTTTACAGATGGCAA 59.607 33.333 0.00 0.00 31.50 4.52
1995 2062 6.883756 TCAACTAATGATGTTTACAGATGGCA 59.116 34.615 0.00 0.00 31.50 4.92
1996 2063 7.320443 TCAACTAATGATGTTTACAGATGGC 57.680 36.000 0.00 0.00 31.50 4.40
1997 2064 9.559958 GTTTCAACTAATGATGTTTACAGATGG 57.440 33.333 0.00 0.00 38.03 3.51
1998 2065 9.559958 GGTTTCAACTAATGATGTTTACAGATG 57.440 33.333 0.00 0.00 38.03 2.90
1999 2066 9.295825 TGGTTTCAACTAATGATGTTTACAGAT 57.704 29.630 0.00 0.00 38.03 2.90
2000 2067 8.684386 TGGTTTCAACTAATGATGTTTACAGA 57.316 30.769 0.00 0.00 38.03 3.41
2001 2068 9.912634 AATGGTTTCAACTAATGATGTTTACAG 57.087 29.630 0.00 0.00 38.03 2.74
2053 2121 2.037121 TCGCACTGAAATGGAGAGTTCA 59.963 45.455 0.00 0.00 35.03 3.18
2062 2130 2.417586 TCATCAGCTTCGCACTGAAATG 59.582 45.455 6.05 2.46 46.63 2.32
2063 2131 2.703416 TCATCAGCTTCGCACTGAAAT 58.297 42.857 6.05 0.00 46.63 2.17
2149 2217 4.584325 AGATGTAGCTGGAGAGTTCTCATC 59.416 45.833 11.01 4.55 44.60 2.92
2185 2253 1.131303 TTGATGACGGTGGGGAAGGT 61.131 55.000 0.00 0.00 0.00 3.50
2222 2290 5.692814 TCTTTGCAGAATCGAGAAATTGTG 58.307 37.500 0.00 0.00 34.08 3.33
2241 2309 3.223674 ACACTTCGGGGTGAATTCTTT 57.776 42.857 7.05 0.00 40.13 2.52
2351 2419 1.996786 GCAACCAGGCATCACGATGG 61.997 60.000 9.01 0.00 39.16 3.51
2382 2450 4.694037 GTCTAAACGGCTACACCAAAAGAT 59.306 41.667 0.00 0.00 39.03 2.40
2391 2459 0.813184 CCGGAGTCTAAACGGCTACA 59.187 55.000 0.00 0.00 41.23 2.74
2477 2546 2.528127 TCCTCCCCGCTTGGAACA 60.528 61.111 0.00 0.00 35.39 3.18
2565 2635 1.202290 CGTTTCTGCAAAGCACAACCT 60.202 47.619 0.00 0.00 33.79 3.50
2612 2682 7.237173 GTGCACTAGAATTCTCAACATTACAC 58.763 38.462 12.24 7.31 0.00 2.90
2616 2686 5.237815 TCGTGCACTAGAATTCTCAACATT 58.762 37.500 12.24 0.00 0.00 2.71
2619 2689 5.786401 AATCGTGCACTAGAATTCTCAAC 57.214 39.130 12.24 3.84 0.00 3.18
2625 2695 3.871594 GCCACTAATCGTGCACTAGAATT 59.128 43.478 16.19 11.25 42.42 2.17
2637 2707 3.689161 TGGAAGACAATTGCCACTAATCG 59.311 43.478 5.05 0.00 0.00 3.34
2658 2728 2.612672 CTCACAGCAAGGCATATCAGTG 59.387 50.000 0.00 0.00 0.00 3.66
2673 2743 2.776670 TTCAGCAGCCGAGCTCACAG 62.777 60.000 15.40 3.10 44.54 3.66
2675 2745 2.047844 TTCAGCAGCCGAGCTCAC 60.048 61.111 15.40 4.97 44.54 3.51
2680 2750 0.037326 TTGGTACTTCAGCAGCCGAG 60.037 55.000 0.00 0.00 35.70 4.63
2698 2770 2.104111 TGTGCTACAGCTACCACTTGTT 59.896 45.455 2.44 0.00 42.66 2.83
2731 4502 2.018644 GCATCCTTTTCAGGCCATCGA 61.019 52.381 5.01 0.00 40.58 3.59
2775 4547 2.599082 GACTCGCCTTTTGATGAGTACG 59.401 50.000 0.00 0.00 41.50 3.67
2782 4554 1.066143 ACGGATGACTCGCCTTTTGAT 60.066 47.619 0.00 0.00 0.00 2.57
2811 4583 1.021968 AAGCAACGACTCGCCTTTTT 58.978 45.000 0.00 0.00 0.00 1.94
2812 4584 1.021968 AAAGCAACGACTCGCCTTTT 58.978 45.000 0.00 0.00 0.00 2.27
2813 4585 1.021968 AAAAGCAACGACTCGCCTTT 58.978 45.000 0.00 2.85 0.00 3.11
2814 4586 1.798813 CTAAAAGCAACGACTCGCCTT 59.201 47.619 0.00 0.00 0.00 4.35
2815 4587 1.270147 ACTAAAAGCAACGACTCGCCT 60.270 47.619 0.00 0.00 0.00 5.52
2816 4588 1.126296 GACTAAAAGCAACGACTCGCC 59.874 52.381 0.00 0.00 0.00 5.54
2817 4589 2.059541 AGACTAAAAGCAACGACTCGC 58.940 47.619 0.00 0.00 0.00 5.03
2818 4590 4.678287 TGTAAGACTAAAAGCAACGACTCG 59.322 41.667 0.00 0.00 0.00 4.18
2819 4591 6.520792 TTGTAAGACTAAAAGCAACGACTC 57.479 37.500 0.00 0.00 0.00 3.36
2820 4592 7.225931 TGAATTGTAAGACTAAAAGCAACGACT 59.774 33.333 0.00 0.00 0.00 4.18
2821 4593 7.320560 GTGAATTGTAAGACTAAAAGCAACGAC 59.679 37.037 0.00 0.00 0.00 4.34
2859 4631 1.146637 GAGTCTGCACTGCACTCAAG 58.853 55.000 14.03 0.00 33.65 3.02
2872 4654 2.818132 GATGAGCCCCCGAGTCTG 59.182 66.667 0.00 0.00 0.00 3.51
2887 4669 7.389053 GGCCTTTTGAGACATATTATTCTCGAT 59.611 37.037 0.00 0.00 41.13 3.59
2888 4670 6.706270 GGCCTTTTGAGACATATTATTCTCGA 59.294 38.462 0.00 0.00 41.13 4.04
2889 4671 6.073003 GGGCCTTTTGAGACATATTATTCTCG 60.073 42.308 0.84 0.00 41.13 4.04
2890 4672 7.001073 AGGGCCTTTTGAGACATATTATTCTC 58.999 38.462 0.00 0.00 39.05 2.87
2891 4673 6.915786 AGGGCCTTTTGAGACATATTATTCT 58.084 36.000 0.00 0.00 0.00 2.40
2892 4674 7.503902 AGAAGGGCCTTTTGAGACATATTATTC 59.496 37.037 21.92 0.61 0.00 1.75
2894 4676 6.915786 AGAAGGGCCTTTTGAGACATATTAT 58.084 36.000 21.92 0.00 0.00 1.28
2895 4677 6.327386 AGAAGGGCCTTTTGAGACATATTA 57.673 37.500 21.92 0.00 0.00 0.98
2897 4679 4.870021 AGAAGGGCCTTTTGAGACATAT 57.130 40.909 21.92 0.00 0.00 1.78
2965 4748 5.986004 AGAACTTGAAACCTACAACTTCG 57.014 39.130 0.00 0.00 30.97 3.79
2998 4781 8.848182 TCACAAAAATAATTAACTGTTACGGGT 58.152 29.630 0.00 0.00 0.00 5.28
2999 4782 9.337091 CTCACAAAAATAATTAACTGTTACGGG 57.663 33.333 0.00 0.00 0.00 5.28
3067 4856 8.985805 CGTACTACCCTATGTTTTATCAAATCC 58.014 37.037 0.00 0.00 0.00 3.01
3070 4859 8.076910 TCCGTACTACCCTATGTTTTATCAAA 57.923 34.615 0.00 0.00 0.00 2.69
3091 4880 4.894784 TGAAATTCTAGCTTTCACTCCGT 58.105 39.130 13.26 0.00 37.61 4.69
3126 4915 8.640063 TCCTGTTACACTTGTAATACACTCTA 57.360 34.615 5.16 0.00 41.85 2.43
3134 4924 4.003648 GCTGCTCCTGTTACACTTGTAAT 58.996 43.478 5.16 0.00 41.85 1.89
3147 4937 1.165907 TTTGTCAACGGCTGCTCCTG 61.166 55.000 0.00 0.00 0.00 3.86
3155 4945 2.595386 GGTGATCATTTTGTCAACGGC 58.405 47.619 0.00 0.00 0.00 5.68
3157 4947 3.913548 TGGGTGATCATTTTGTCAACG 57.086 42.857 0.00 0.00 32.85 4.10
3160 4950 6.267242 TCATCTTTTGGGTGATCATTTTGTCA 59.733 34.615 0.00 0.00 0.00 3.58
3213 5003 4.052159 AGGACTATCTGATTTGTCTGCG 57.948 45.455 17.03 0.00 0.00 5.18
3214 5004 7.930865 AGAAATAGGACTATCTGATTTGTCTGC 59.069 37.037 17.03 7.19 0.00 4.26
3217 5007 7.596995 CCGAGAAATAGGACTATCTGATTTGTC 59.403 40.741 12.21 12.21 0.00 3.18
3255 5046 0.036388 CTTGGCTCGGTGGAAGCTTA 60.036 55.000 0.00 0.00 0.00 3.09
3256 5047 1.302832 CTTGGCTCGGTGGAAGCTT 60.303 57.895 0.00 0.00 0.00 3.74
3257 5048 2.056906 AACTTGGCTCGGTGGAAGCT 62.057 55.000 0.00 0.00 0.00 3.74
3277 5068 7.048629 TGTGCTACAAATTTCAATCCTTTCA 57.951 32.000 0.00 0.00 0.00 2.69
3291 5082 4.980573 AGGGAGTAACAATGTGCTACAAA 58.019 39.130 3.50 0.00 0.00 2.83
3320 5111 9.959749 GATTTTCAGGCCATCGTAATTTATTTA 57.040 29.630 5.01 0.00 0.00 1.40
3321 5112 7.647715 CGATTTTCAGGCCATCGTAATTTATTT 59.352 33.333 5.01 0.00 36.00 1.40
3322 5113 7.012894 TCGATTTTCAGGCCATCGTAATTTATT 59.987 33.333 18.62 0.00 40.57 1.40
3323 5114 6.485313 TCGATTTTCAGGCCATCGTAATTTAT 59.515 34.615 18.62 0.00 40.57 1.40
3324 5115 5.818336 TCGATTTTCAGGCCATCGTAATTTA 59.182 36.000 18.62 0.02 40.57 1.40
3325 5116 4.638421 TCGATTTTCAGGCCATCGTAATTT 59.362 37.500 18.62 0.00 40.57 1.82
3326 5117 4.196193 TCGATTTTCAGGCCATCGTAATT 58.804 39.130 18.62 0.00 40.57 1.40
3327 5118 3.804036 TCGATTTTCAGGCCATCGTAAT 58.196 40.909 18.62 6.16 40.57 1.89
3328 5119 3.254470 TCGATTTTCAGGCCATCGTAA 57.746 42.857 18.62 1.90 40.57 3.18
3329 5120 2.971660 TCGATTTTCAGGCCATCGTA 57.028 45.000 18.62 6.44 40.57 3.43
3361 5153 0.692419 AAGATGAGGTCCCAGCCGAT 60.692 55.000 0.00 0.00 0.00 4.18
3407 5199 0.459237 TGTTTTTGGCTGTTGTGCGG 60.459 50.000 0.00 0.00 0.00 5.69
3424 5216 7.475771 TTCATCTTTTGCGCTTTATTTTTGT 57.524 28.000 9.73 0.00 0.00 2.83
3495 5287 3.246619 GAGGAGCTCGTAGTTCTGTTTG 58.753 50.000 9.29 0.00 0.00 2.93
3559 5352 3.060020 GAGATCGAACGGCGGTGGA 62.060 63.158 13.06 13.06 41.33 4.02
3562 5355 4.189188 CGGAGATCGAACGGCGGT 62.189 66.667 13.24 3.35 42.43 5.68
3629 5429 1.291109 TGGGGGAAATTAAGCGGAGA 58.709 50.000 0.00 0.00 0.00 3.71
3667 5469 1.153765 CAATCGCGACAGGAGCTCA 60.154 57.895 12.93 0.00 0.00 4.26
3697 5499 2.038269 GGAAATCGGAACAGGCGCA 61.038 57.895 10.83 0.00 0.00 6.09
3700 5502 2.791927 GCGGAAATCGGAACAGGC 59.208 61.111 0.00 0.00 39.69 4.85
3701 5503 1.740296 ACGCGGAAATCGGAACAGG 60.740 57.895 12.47 0.00 39.69 4.00
3728 5530 0.451783 CCTATCCACCAAACAAGCGC 59.548 55.000 0.00 0.00 0.00 5.92
3740 5542 2.039418 CCACGGATCAACTCCTATCCA 58.961 52.381 0.00 0.00 41.57 3.41
3855 5663 2.592308 GCCCCTTGCCCTACTGAG 59.408 66.667 0.00 0.00 0.00 3.35
3878 5686 1.528586 CACTGACGAAACTGCAAGGAG 59.471 52.381 0.00 0.00 39.30 3.69
3898 5706 1.226435 CGCAGCGTCAGACTCCTAC 60.226 63.158 6.65 0.00 0.00 3.18
3910 5718 0.043053 CACATTCGATAACCGCAGCG 60.043 55.000 8.18 8.18 38.37 5.18
3913 5721 2.670905 CAGAACACATTCGATAACCGCA 59.329 45.455 0.00 0.00 40.04 5.69
3916 5724 2.671396 ACGCAGAACACATTCGATAACC 59.329 45.455 0.00 0.00 40.04 2.85
3920 5728 0.443869 GCACGCAGAACACATTCGAT 59.556 50.000 0.00 0.00 40.04 3.59
3921 5729 1.859398 GCACGCAGAACACATTCGA 59.141 52.632 0.00 0.00 40.04 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.