Multiple sequence alignment - TraesCS6B01G129300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G129300 chr6B 100.000 4097 0 0 1 4097 125411806 125407710 0.000000e+00 7566.0
1 TraesCS6B01G129300 chr6B 86.596 567 52 15 3551 4096 125340145 125339582 4.530000e-169 604.0
2 TraesCS6B01G129300 chr6B 85.847 431 54 6 2844 3272 125341163 125340738 6.250000e-123 451.0
3 TraesCS6B01G129300 chr6B 87.770 278 22 5 3773 4046 125382643 125382374 8.550000e-82 315.0
4 TraesCS6B01G129300 chr6B 95.161 186 4 2 3871 4051 125339157 125338972 5.180000e-74 289.0
5 TraesCS6B01G129300 chr6B 81.091 275 38 10 3773 4038 124797589 124797320 1.490000e-49 207.0
6 TraesCS6B01G129300 chr6B 93.478 46 3 0 4051 4096 124797256 124797211 7.350000e-08 69.4
7 TraesCS6B01G129300 chr6D 92.716 3281 143 45 895 4096 55634972 55631709 0.000000e+00 4647.0
8 TraesCS6B01G129300 chr6D 89.338 1238 50 18 2926 4096 55407620 55406398 0.000000e+00 1480.0
9 TraesCS6B01G129300 chr6D 89.615 857 68 14 1 848 55669663 55668819 0.000000e+00 1070.0
10 TraesCS6B01G129300 chr6D 86.833 562 54 15 3551 4096 55317043 55316486 9.740000e-171 610.0
11 TraesCS6B01G129300 chr6D 84.045 445 49 7 2844 3267 55110071 55109628 3.810000e-110 409.0
12 TraesCS6B01G129300 chr6D 95.392 217 9 1 2754 2970 55427466 55427251 1.090000e-90 344.0
13 TraesCS6B01G129300 chr6D 87.912 273 20 6 3783 4051 55107955 55107692 3.980000e-80 309.0
14 TraesCS6B01G129300 chr6D 94.326 141 8 0 2615 2755 55427842 55427702 2.480000e-52 217.0
15 TraesCS6B01G129300 chr6D 85.149 202 21 7 3012 3205 55427250 55427050 8.980000e-47 198.0
16 TraesCS6B01G129300 chr6D 79.310 203 25 11 3773 3959 46942458 46942659 4.300000e-25 126.0
17 TraesCS6B01G129300 chr6D 91.139 79 7 0 2541 2619 55432727 55432649 1.560000e-19 108.0
18 TraesCS6B01G129300 chr6A 90.920 3249 218 39 1 3205 69140539 69137324 0.000000e+00 4294.0
19 TraesCS6B01G129300 chr6A 88.078 1233 58 28 2926 4096 69136449 69135244 0.000000e+00 1380.0
20 TraesCS6B01G129300 chr5A 79.896 383 60 11 1088 1455 691824208 691824588 8.730000e-67 265.0
21 TraesCS6B01G129300 chr5A 81.208 298 48 6 265 560 600354429 600354720 2.460000e-57 233.0
22 TraesCS6B01G129300 chr5A 78.746 287 54 6 281 565 169291163 169291444 6.990000e-43 185.0
23 TraesCS6B01G129300 chr3D 80.818 318 51 9 250 561 123617405 123617092 1.470000e-59 241.0
24 TraesCS6B01G129300 chr1A 78.594 313 61 6 252 561 557880148 557879839 6.940000e-48 202.0
25 TraesCS6B01G129300 chr2B 80.224 268 46 7 265 530 9842948 9843210 1.160000e-45 195.0
26 TraesCS6B01G129300 chr7A 78.767 292 51 7 252 537 469389588 469389874 6.990000e-43 185.0
27 TraesCS6B01G129300 chr7D 77.926 299 58 5 262 559 638271055 638271346 3.250000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G129300 chr6B 125407710 125411806 4096 True 7566 7566 100.000000 1 4097 1 chr6B.!!$R2 4096
1 TraesCS6B01G129300 chr6B 125338972 125341163 2191 True 448 604 89.201333 2844 4096 3 chr6B.!!$R4 1252
2 TraesCS6B01G129300 chr6D 55631709 55634972 3263 True 4647 4647 92.716000 895 4096 1 chr6D.!!$R4 3201
3 TraesCS6B01G129300 chr6D 55406398 55407620 1222 True 1480 1480 89.338000 2926 4096 1 chr6D.!!$R2 1170
4 TraesCS6B01G129300 chr6D 55668819 55669663 844 True 1070 1070 89.615000 1 848 1 chr6D.!!$R5 847
5 TraesCS6B01G129300 chr6D 55316486 55317043 557 True 610 610 86.833000 3551 4096 1 chr6D.!!$R1 545
6 TraesCS6B01G129300 chr6D 55107692 55110071 2379 True 359 409 85.978500 2844 4051 2 chr6D.!!$R6 1207
7 TraesCS6B01G129300 chr6D 55427050 55427842 792 True 253 344 91.622333 2615 3205 3 chr6D.!!$R7 590
8 TraesCS6B01G129300 chr6A 69135244 69140539 5295 True 2837 4294 89.499000 1 4096 2 chr6A.!!$R1 4095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 890 0.320374 TTCGTGCTCTTTCACCCGAT 59.680 50.0 0.00 0.0 33.57 4.18 F
879 891 0.320374 TCGTGCTCTTTCACCCGATT 59.680 50.0 0.00 0.0 33.57 3.34 F
2538 2574 0.674895 GTGCGATTCAGGAAGCCACT 60.675 55.0 9.89 0.0 30.68 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2574 2610 0.027979 CATTGTCTTGCATACGCCCG 59.972 55.0 0.0 0.0 37.32 6.13 R
2981 4415 0.523072 CAACGGCAAAGTCATGGAGG 59.477 55.0 0.0 0.0 0.00 4.30 R
3474 5209 0.750850 GGCCTCGCCTCTATTGTACA 59.249 55.0 0.0 0.0 46.69 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.631717 AGCAAGATCCAAATAAGGAAGTAAC 57.368 36.000 0.00 0.00 41.92 2.50
299 301 0.759346 CAGTGGTATCCCTAGCCCAC 59.241 60.000 0.00 0.00 46.17 4.61
367 369 2.208132 TTATTTCAGGGCTTTCGGCA 57.792 45.000 0.00 0.00 44.01 5.69
412 414 2.542020 TCTCGTGGACAATGAAAGCA 57.458 45.000 0.00 0.00 0.00 3.91
420 422 2.821969 GGACAATGAAAGCATCTGTGGT 59.178 45.455 0.00 0.00 37.76 4.16
441 443 5.185056 TGGTGACTTCGTCAATCTCAAGATA 59.815 40.000 0.00 0.00 44.49 1.98
447 449 7.099764 ACTTCGTCAATCTCAAGATAATGTGT 58.900 34.615 0.00 0.00 33.73 3.72
459 461 3.131223 AGATAATGTGTCGGTCCAGTCTG 59.869 47.826 0.00 0.00 0.00 3.51
466 468 0.400594 TCGGTCCAGTCTGTCAGAGA 59.599 55.000 1.75 0.00 0.00 3.10
477 479 3.888323 GTCTGTCAGAGATGCTCATAGGA 59.112 47.826 1.75 0.00 31.63 2.94
533 535 4.048504 GTGTATGTGCGTATGTATGAGCA 58.951 43.478 0.00 0.00 37.26 4.26
553 555 5.726397 AGCATCTATGTTTGTACCGTGTTA 58.274 37.500 0.00 0.00 0.00 2.41
631 633 7.056006 TCAGATTCGTATACCACCTAGTAACA 58.944 38.462 0.00 0.00 0.00 2.41
648 650 6.912951 AGTAACAACTACCATCACTAGTGT 57.087 37.500 21.99 7.40 0.00 3.55
669 671 4.137872 CCGAAGAGGCCGGCGTTA 62.138 66.667 24.48 0.00 40.54 3.18
670 672 2.106332 CGAAGAGGCCGGCGTTAT 59.894 61.111 24.48 15.09 0.00 1.89
678 688 1.012486 GGCCGGCGTTATATTCCTCG 61.012 60.000 22.54 0.00 0.00 4.63
681 691 1.324718 CGGCGTTATATTCCTCGTCG 58.675 55.000 0.00 0.00 43.95 5.12
737 749 8.243426 TCAAACTATTGATGTAGAAAACCATGC 58.757 33.333 0.00 0.00 40.59 4.06
745 757 4.713553 TGTAGAAAACCATGCAAGTCTCA 58.286 39.130 0.00 0.00 0.00 3.27
746 758 4.756642 TGTAGAAAACCATGCAAGTCTCAG 59.243 41.667 0.00 0.00 0.00 3.35
749 761 5.376625 AGAAAACCATGCAAGTCTCAGTAA 58.623 37.500 0.00 0.00 0.00 2.24
750 762 6.006449 AGAAAACCATGCAAGTCTCAGTAAT 58.994 36.000 0.00 0.00 0.00 1.89
843 855 5.346181 TTTTTGAGGAAACCCGATTTTGT 57.654 34.783 0.00 0.00 0.00 2.83
871 883 6.603095 ACTGTATTCAAATTCGTGCTCTTTC 58.397 36.000 0.00 0.00 0.00 2.62
878 890 0.320374 TTCGTGCTCTTTCACCCGAT 59.680 50.000 0.00 0.00 33.57 4.18
879 891 0.320374 TCGTGCTCTTTCACCCGATT 59.680 50.000 0.00 0.00 33.57 3.34
880 892 1.156736 CGTGCTCTTTCACCCGATTT 58.843 50.000 0.00 0.00 33.57 2.17
881 893 1.535462 CGTGCTCTTTCACCCGATTTT 59.465 47.619 0.00 0.00 33.57 1.82
882 894 2.031157 CGTGCTCTTTCACCCGATTTTT 60.031 45.455 0.00 0.00 33.57 1.94
956 968 3.455469 CCGGGTCAGGGTACGTCC 61.455 72.222 0.00 0.00 0.00 4.79
985 997 1.770110 TACATAGCCCAGGCCCAGG 60.770 63.158 4.70 0.33 43.17 4.45
1006 1018 4.710167 GCCGTAACCCCACGCCTT 62.710 66.667 0.00 0.00 40.59 4.35
1007 1019 2.980475 CCGTAACCCCACGCCTTA 59.020 61.111 0.00 0.00 40.59 2.69
1035 1047 1.670971 TTCGATTCAGTTCGCGCGAC 61.671 55.000 35.02 26.00 38.97 5.19
1036 1048 2.695646 GATTCAGTTCGCGCGACC 59.304 61.111 35.02 27.67 0.00 4.79
1305 1329 2.870161 CTCGTCTTCGTCGCCGTG 60.870 66.667 0.00 0.00 38.33 4.94
1309 1333 1.799121 GTCTTCGTCGCCGTGTACC 60.799 63.158 0.00 0.00 35.01 3.34
1381 1405 2.004489 GACTTCGCGCGGATCTACG 61.004 63.158 31.69 11.82 0.00 3.51
1383 1407 1.722852 CTTCGCGCGGATCTACGAG 60.723 63.158 31.69 2.81 35.74 4.18
1625 1658 2.032528 CCGGCAGGAGAAGCACAA 59.967 61.111 0.00 0.00 41.02 3.33
1672 1705 8.108999 TCAATGGTTTGGAAGAGAATTCTCATA 58.891 33.333 31.79 15.19 38.15 2.15
1688 1721 3.055470 ATACCGGCCATGGTGGTGG 62.055 63.158 30.14 21.01 43.68 4.61
1855 1891 2.299297 AGAGACAAGAAACCTGTACCCG 59.701 50.000 0.00 0.00 0.00 5.28
1909 1945 1.754380 CTCCAACCCGGCGGATCATA 61.754 60.000 30.79 8.84 33.14 2.15
1924 1960 4.172232 ATAGCGGAGGGGCTGGGA 62.172 66.667 0.00 0.00 44.50 4.37
2007 2043 1.547675 GCAAAGGATGGGTGGTTCTCA 60.548 52.381 0.00 0.00 0.00 3.27
2145 2181 4.888326 AGAGAAGCTCTGTGAATCAGTT 57.112 40.909 0.00 0.00 43.97 3.16
2148 2184 1.436600 AGCTCTGTGAATCAGTTGCG 58.563 50.000 0.00 0.00 43.31 4.85
2209 2245 4.141620 GGATATCCTCTTCTGTTCAGGCAA 60.142 45.833 14.97 0.00 0.00 4.52
2514 2550 1.147153 GGATCCAGCTGTAGTGGCC 59.853 63.158 13.81 0.00 34.77 5.36
2538 2574 0.674895 GTGCGATTCAGGAAGCCACT 60.675 55.000 9.89 0.00 30.68 4.00
2544 2580 0.984230 TTCAGGAAGCCACTCGGAAT 59.016 50.000 0.00 0.00 0.00 3.01
2571 2607 2.159282 AGACGTTGTTCTTGTCGACACT 60.159 45.455 19.90 4.88 37.69 3.55
2574 2610 1.003866 GTTGTTCTTGTCGACACTGCC 60.004 52.381 19.90 7.61 0.00 4.85
3206 4668 5.050490 TCAGTTGAGCTCAAAGTAACAGAC 58.950 41.667 29.99 15.26 37.63 3.51
3218 4680 1.463444 GTAACAGACGCATGTGGTTCC 59.537 52.381 11.65 0.00 32.52 3.62
3340 5075 9.459640 CAATTCCATTGATGAAACAGATGATAC 57.540 33.333 0.00 0.00 42.83 2.24
3361 5096 8.999431 TGATACTCTGAACAATTTTGGTACTTC 58.001 33.333 0.00 0.00 0.00 3.01
3369 5104 2.243602 TTTTGGTACTTCGTCGCCTT 57.756 45.000 0.00 0.00 0.00 4.35
3471 5206 1.377594 TGAGCACGCCTCATGCAAT 60.378 52.632 0.00 0.00 45.44 3.56
3472 5207 0.107752 TGAGCACGCCTCATGCAATA 60.108 50.000 0.00 0.00 45.44 1.90
3473 5208 0.305922 GAGCACGCCTCATGCAATAC 59.694 55.000 0.00 0.00 45.92 1.89
3474 5209 0.107508 AGCACGCCTCATGCAATACT 60.108 50.000 0.00 0.00 45.92 2.12
3477 5212 2.549926 CACGCCTCATGCAATACTGTA 58.450 47.619 0.00 0.00 41.33 2.74
3479 5306 2.093711 ACGCCTCATGCAATACTGTACA 60.094 45.455 0.00 0.00 41.33 2.90
3483 5310 5.107337 CGCCTCATGCAATACTGTACAATAG 60.107 44.000 0.00 0.00 41.33 1.73
3485 5312 6.146837 GCCTCATGCAATACTGTACAATAGAG 59.853 42.308 0.00 0.00 40.77 2.43
3486 5313 6.648310 CCTCATGCAATACTGTACAATAGAGG 59.352 42.308 0.00 0.00 0.00 3.69
3487 5314 5.991606 TCATGCAATACTGTACAATAGAGGC 59.008 40.000 0.00 0.00 0.00 4.70
3505 5339 1.432270 GCGAGGCCAGATAACAGTGC 61.432 60.000 5.01 0.00 0.00 4.40
3524 5358 1.352083 CCAGTCTTCCCTCACCTGAA 58.648 55.000 0.00 0.00 0.00 3.02
3545 5397 0.898320 CCCCTCATCGTCAGTCTGTT 59.102 55.000 0.00 0.00 0.00 3.16
3705 6664 0.894141 TTGCAAGTGTGTGCCAAAGT 59.106 45.000 0.00 0.00 44.26 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.232913 TGGATCTTGCTAAATAATTACAACCC 57.767 34.615 0.00 0.00 0.00 4.11
29 30 8.325787 TGTTACTTCCTTATTTGGATCTTGCTA 58.674 33.333 0.00 0.00 35.83 3.49
46 47 7.095355 TGCTTCTTATCGACTTTTGTTACTTCC 60.095 37.037 0.00 0.00 0.00 3.46
54 55 8.948853 TGTTATTTGCTTCTTATCGACTTTTG 57.051 30.769 0.00 0.00 0.00 2.44
172 173 9.995003 AAAAGAATATGCAAGACAAATGGTTTA 57.005 25.926 0.00 0.00 0.00 2.01
263 264 2.092212 CACTGCCTTCCTAACCATCCAT 60.092 50.000 0.00 0.00 0.00 3.41
299 301 6.371548 TGTCAAATCTAAGATTTGAACTCCGG 59.628 38.462 21.55 0.00 45.88 5.14
367 369 3.643320 TCTCCTCTCACTGAACACACATT 59.357 43.478 0.00 0.00 0.00 2.71
403 405 3.759581 AGTCACCACAGATGCTTTCATT 58.240 40.909 0.00 0.00 31.96 2.57
405 407 2.936919 AGTCACCACAGATGCTTTCA 57.063 45.000 0.00 0.00 0.00 2.69
409 411 0.681733 ACGAAGTCACCACAGATGCT 59.318 50.000 0.00 0.00 29.74 3.79
441 443 1.000955 GACAGACTGGACCGACACATT 59.999 52.381 7.51 0.00 0.00 2.71
447 449 0.400594 TCTCTGACAGACTGGACCGA 59.599 55.000 7.51 2.21 0.00 4.69
563 565 9.747898 TTCTGGTGTTATTTGTCCTGTTATAAT 57.252 29.630 0.00 0.00 0.00 1.28
656 658 0.320697 GGAATATAACGCCGGCCTCT 59.679 55.000 23.46 7.94 0.00 3.69
678 688 1.000171 ACAAGGTTTACCGTCTCCGAC 60.000 52.381 0.00 0.00 42.08 4.79
681 691 2.842457 ACAACAAGGTTTACCGTCTCC 58.158 47.619 0.00 0.00 42.08 3.71
833 845 7.837202 TTGAATACAGTACTACAAAATCGGG 57.163 36.000 0.00 0.00 0.00 5.14
843 855 7.544622 AGAGCACGAATTTGAATACAGTACTA 58.455 34.615 0.00 0.00 0.00 1.82
911 923 4.023536 GGACACTCTCAGTCTATCCGAATC 60.024 50.000 0.00 0.00 36.29 2.52
956 968 1.558383 GCTATGTAGCGCCGAAACG 59.442 57.895 2.29 0.00 39.82 3.60
992 1004 1.078214 GGGTAAGGCGTGGGGTTAC 60.078 63.158 0.00 0.00 0.00 2.50
1006 1018 4.617530 CGAACTGAATCGAAAGACTGGGTA 60.618 45.833 0.00 0.00 46.97 3.69
1007 1019 3.665190 GAACTGAATCGAAAGACTGGGT 58.335 45.455 0.00 0.00 46.97 4.51
1035 1047 2.522638 GCGGCGAACTGAATACCGG 61.523 63.158 12.98 0.00 43.99 5.28
1036 1048 2.522638 GGCGGCGAACTGAATACCG 61.523 63.158 12.98 0.00 46.50 4.02
1267 1291 3.542742 GAGCGCGTTGTCGTAGGC 61.543 66.667 8.43 0.00 39.49 3.93
1326 1350 1.423056 GAGGTCGTCGACGTACAGG 59.577 63.158 34.40 8.69 40.80 4.00
1362 1386 2.004489 GTAGATCCGCGCGAAGTCG 61.004 63.158 34.63 14.77 43.27 4.18
1365 1389 1.722852 CTCGTAGATCCGCGCGAAG 60.723 63.158 34.63 16.51 33.89 3.79
1401 1425 1.136774 CATCTCGCCGAACTCGTCA 59.863 57.895 0.00 0.00 37.74 4.35
1413 1437 1.880340 GAGCTGCCGGAACATCTCG 60.880 63.158 5.05 0.00 0.00 4.04
1418 1442 2.244117 GAGATGGAGCTGCCGGAACA 62.244 60.000 5.05 0.00 40.66 3.18
1458 1482 2.126031 GAGACGGAAGGTGGACGC 60.126 66.667 0.00 0.00 0.00 5.19
1494 1521 4.496336 GCGCCAGGGGATGAAGCT 62.496 66.667 7.95 0.00 0.00 3.74
1495 1522 4.496336 AGCGCCAGGGGATGAAGC 62.496 66.667 7.95 0.00 0.00 3.86
1496 1523 2.203126 GAGCGCCAGGGGATGAAG 60.203 66.667 7.95 0.00 0.00 3.02
1625 1658 0.177604 GCTACCATCTGCTGCTGAGT 59.822 55.000 14.50 10.23 0.00 3.41
1688 1721 2.158667 TCCTCCTCCCTTTTCACAACAC 60.159 50.000 0.00 0.00 0.00 3.32
1855 1891 4.939052 TCTCGGATGGTTTCTTATCCTC 57.061 45.455 0.00 0.00 40.55 3.71
2145 2181 2.521950 CCTAGGAGGCTAGCCGCA 60.522 66.667 34.32 17.29 41.67 5.69
2209 2245 2.393646 GACCAGAGCCTCTTCCATAGT 58.606 52.381 0.00 0.00 0.00 2.12
2514 2550 1.089920 CTTCCTGAATCGCACCCTTG 58.910 55.000 0.00 0.00 0.00 3.61
2538 2574 5.475719 AGAACAACGTCTGATTTATTCCGA 58.524 37.500 0.00 0.00 0.00 4.55
2544 2580 5.174398 GTCGACAAGAACAACGTCTGATTTA 59.826 40.000 11.55 0.00 0.00 1.40
2571 2607 4.089239 TCTTGCATACGCCCGGCA 62.089 61.111 10.77 0.00 37.32 5.69
2574 2610 0.027979 CATTGTCTTGCATACGCCCG 59.972 55.000 0.00 0.00 37.32 6.13
2981 4415 0.523072 CAACGGCAAAGTCATGGAGG 59.477 55.000 0.00 0.00 0.00 4.30
3024 4459 4.095932 GCCCTTACATAAGTAGCAAACCAC 59.904 45.833 6.20 0.00 33.43 4.16
3206 4668 3.181501 ACGAAATAATGGAACCACATGCG 60.182 43.478 0.00 4.14 0.00 4.73
3273 5000 0.445436 GCTTGATTGCACACCTCTCG 59.555 55.000 0.00 0.00 0.00 4.04
3340 5075 6.300354 ACGAAGTACCAAAATTGTTCAGAG 57.700 37.500 0.00 0.00 41.94 3.35
3361 5096 2.167861 GGCTGAAGCTAAGGCGACG 61.168 63.158 7.08 0.00 44.37 5.12
3471 5206 2.621998 GCCTCGCCTCTATTGTACAGTA 59.378 50.000 0.00 0.00 0.00 2.74
3472 5207 1.409427 GCCTCGCCTCTATTGTACAGT 59.591 52.381 0.00 0.00 0.00 3.55
3473 5208 1.269831 GGCCTCGCCTCTATTGTACAG 60.270 57.143 0.00 0.00 46.69 2.74
3474 5209 0.750850 GGCCTCGCCTCTATTGTACA 59.249 55.000 0.00 0.00 46.69 2.90
3486 5313 1.432270 GCACTGTTATCTGGCCTCGC 61.432 60.000 3.32 0.00 0.00 5.03
3487 5314 0.811616 GGCACTGTTATCTGGCCTCG 60.812 60.000 3.32 0.00 41.39 4.63
3494 5328 2.237392 GGGAAGACTGGCACTGTTATCT 59.763 50.000 0.00 0.00 41.64 1.98
3505 5339 1.352083 TTCAGGTGAGGGAAGACTGG 58.648 55.000 0.00 0.00 0.00 4.00
3524 5358 1.342474 ACAGACTGACGATGAGGGGAT 60.342 52.381 10.08 0.00 0.00 3.85
3545 5397 9.264719 CATCTGATAACATCACAATGTAAGCTA 57.735 33.333 0.00 0.00 45.48 3.32
3585 5520 3.353557 TCAGTGATACAGGAGCGTAAGT 58.646 45.455 0.00 0.00 41.68 2.24
3590 5525 4.021981 TGGATATTCAGTGATACAGGAGCG 60.022 45.833 0.00 0.00 0.00 5.03
3705 6664 6.981559 GGCACACTTTGTTTTTGGAACTATTA 59.018 34.615 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.