Multiple sequence alignment - TraesCS6B01G129200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G129200 chr6B 100.000 3518 0 0 1 3518 125403938 125407455 0.000000e+00 6497.0
1 TraesCS6B01G129200 chr6B 85.230 1977 267 17 1030 2995 125336252 125338214 0.000000e+00 2010.0
2 TraesCS6B01G129200 chr6B 85.639 1525 203 11 970 2485 125379550 125381067 0.000000e+00 1589.0
3 TraesCS6B01G129200 chr6B 88.367 447 36 8 2555 2996 125381267 125381702 1.120000e-144 523.0
4 TraesCS6B01G129200 chr6B 87.844 436 38 11 3087 3517 125381707 125382132 6.780000e-137 497.0
5 TraesCS6B01G129200 chr6B 86.239 436 47 10 3087 3517 125338221 125338648 8.900000e-126 460.0
6 TraesCS6B01G129200 chr6B 89.459 351 27 4 589 935 125370337 125370681 5.390000e-118 435.0
7 TraesCS6B01G129200 chr6B 78.026 537 82 7 2482 2988 124664097 124664627 4.410000e-79 305.0
8 TraesCS6B01G129200 chr6B 87.709 179 22 0 672 850 125362914 125363092 3.560000e-50 209.0
9 TraesCS6B01G129200 chr6B 96.063 127 5 0 3392 3518 125339193 125339319 1.280000e-49 207.0
10 TraesCS6B01G129200 chr6B 80.952 84 13 3 269 350 554122148 554122230 2.930000e-06 63.9
11 TraesCS6B01G129200 chr6D 91.904 2631 121 32 455 3044 55403236 55405815 0.000000e+00 3594.0
12 TraesCS6B01G129200 chr6D 87.644 2428 249 23 589 2996 55628649 55631045 0.000000e+00 2774.0
13 TraesCS6B01G129200 chr6D 84.289 1935 246 36 589 2485 55104444 55106358 0.000000e+00 1836.0
14 TraesCS6B01G129200 chr6D 83.611 1739 224 36 589 2291 55311815 55313528 0.000000e+00 1576.0
15 TraesCS6B01G129200 chr6D 81.664 1478 253 16 995 2463 48468838 48467370 0.000000e+00 1212.0
16 TraesCS6B01G129200 chr6D 91.904 667 40 3 2334 2996 55315180 55315836 0.000000e+00 920.0
17 TraesCS6B01G129200 chr6D 93.779 434 22 3 3087 3517 55315841 55316272 0.000000e+00 647.0
18 TraesCS6B01G129200 chr6D 88.046 527 46 9 2476 2996 55106511 55107026 3.000000e-170 608.0
19 TraesCS6B01G129200 chr6D 91.435 432 19 8 3087 3515 55631049 55631465 8.470000e-161 577.0
20 TraesCS6B01G129200 chr6D 87.844 436 37 11 3087 3517 55107031 55107455 6.780000e-137 497.0
21 TraesCS6B01G129200 chr6D 95.584 317 3 1 3202 3518 55405838 55406143 6.780000e-137 497.0
22 TraesCS6B01G129200 chr6D 97.959 49 1 0 3040 3088 10420812 10420764 6.260000e-13 86.1
23 TraesCS6B01G129200 chr6A 88.906 2542 229 25 455 2983 69132029 69134530 0.000000e+00 3083.0
24 TraesCS6B01G129200 chr6A 81.573 1449 246 17 1027 2464 67055454 67054016 0.000000e+00 1177.0
25 TraesCS6B01G129200 chr6A 96.083 434 14 3 3087 3518 69134549 69134981 0.000000e+00 704.0
26 TraesCS6B01G129200 chr6A 82.353 85 10 5 268 350 12292096 12292177 6.300000e-08 69.4
27 TraesCS6B01G129200 chr3B 85.714 98 6 5 2998 3088 557174633 557174729 2.890000e-16 97.1
28 TraesCS6B01G129200 chr7B 95.000 60 2 1 3029 3088 123804870 123804928 3.740000e-15 93.5
29 TraesCS6B01G129200 chr5D 80.488 123 20 4 245 365 565183573 565183693 1.340000e-14 91.6
30 TraesCS6B01G129200 chr5D 94.444 54 1 2 298 350 137061333 137061281 8.090000e-12 82.4
31 TraesCS6B01G129200 chr1B 82.692 104 16 2 277 379 488012769 488012667 1.340000e-14 91.6
32 TraesCS6B01G129200 chr1B 82.828 99 11 3 2998 3090 634250563 634250661 2.250000e-12 84.2
33 TraesCS6B01G129200 chr3D 82.000 100 12 4 2998 3091 532994177 532994078 2.910000e-11 80.5
34 TraesCS6B01G129200 chr3D 85.714 77 10 1 298 374 591861426 591861501 2.910000e-11 80.5
35 TraesCS6B01G129200 chr2A 89.831 59 6 0 3035 3093 334555537 334555595 3.770000e-10 76.8
36 TraesCS6B01G129200 chr2D 87.879 66 4 4 3025 3088 636739939 636740002 1.350000e-09 75.0
37 TraesCS6B01G129200 chr2D 84.848 66 6 4 3025 3088 636888464 636888401 2.930000e-06 63.9
38 TraesCS6B01G129200 chr1A 83.333 84 11 3 272 354 82721612 82721531 1.350000e-09 75.0
39 TraesCS6B01G129200 chr4D 81.818 88 14 2 268 354 408803164 408803250 4.870000e-09 73.1
40 TraesCS6B01G129200 chr7A 80.645 93 16 2 2998 3088 683183006 683183098 1.750000e-08 71.3
41 TraesCS6B01G129200 chr7A 79.787 94 13 6 283 374 193612905 193612994 2.930000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G129200 chr6B 125403938 125407455 3517 False 6497.000000 6497 100.000000 1 3518 1 chr6B.!!$F4 3517
1 TraesCS6B01G129200 chr6B 125336252 125339319 3067 False 892.333333 2010 89.177333 1030 3518 3 chr6B.!!$F6 2488
2 TraesCS6B01G129200 chr6B 125379550 125382132 2582 False 869.666667 1589 87.283333 970 3517 3 chr6B.!!$F7 2547
3 TraesCS6B01G129200 chr6B 124664097 124664627 530 False 305.000000 305 78.026000 2482 2988 1 chr6B.!!$F1 506
4 TraesCS6B01G129200 chr6D 55403236 55406143 2907 False 2045.500000 3594 93.744000 455 3518 2 chr6D.!!$F3 3063
5 TraesCS6B01G129200 chr6D 55628649 55631465 2816 False 1675.500000 2774 89.539500 589 3515 2 chr6D.!!$F4 2926
6 TraesCS6B01G129200 chr6D 48467370 48468838 1468 True 1212.000000 1212 81.664000 995 2463 1 chr6D.!!$R2 1468
7 TraesCS6B01G129200 chr6D 55311815 55316272 4457 False 1047.666667 1576 89.764667 589 3517 3 chr6D.!!$F2 2928
8 TraesCS6B01G129200 chr6D 55104444 55107455 3011 False 980.333333 1836 86.726333 589 3517 3 chr6D.!!$F1 2928
9 TraesCS6B01G129200 chr6A 69132029 69134981 2952 False 1893.500000 3083 92.494500 455 3518 2 chr6A.!!$F2 3063
10 TraesCS6B01G129200 chr6A 67054016 67055454 1438 True 1177.000000 1177 81.573000 1027 2464 1 chr6A.!!$R1 1437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.026803 GTCGGAATTGACGATGCAGC 59.973 55.0 5.29 0.0 42.82 5.25 F
192 193 0.033920 TGCACTTGTCGATGCAGTCT 59.966 50.0 7.31 0.0 46.63 3.24 F
278 279 0.038618 TCAACGGTGTGATCGTCTGG 60.039 55.0 0.00 0.0 40.18 3.86 F
586 599 0.179000 ATTCCTCGTGGATGTGCCTC 59.821 55.0 7.11 0.0 42.81 4.70 F
975 1070 0.461339 CCGTTATCCACCCTTGTCGG 60.461 60.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1378 0.179111 CTTCTCGAGCCATGCGGTTA 60.179 55.000 7.81 0.00 33.28 2.85 R
1390 1520 0.638746 GTAACGACGTTCGCCATGAG 59.361 55.000 17.94 0.00 45.12 2.90 R
1394 1524 0.664166 GAAGGTAACGACGTTCGCCA 60.664 55.000 25.88 6.87 45.12 5.69 R
1415 1545 1.211457 AGAGGCACTTGAATAGGCTGG 59.789 52.381 0.00 0.00 41.55 4.85 R
2589 4512 2.012673 CTTCTGCAGCCTATGACCAAC 58.987 52.381 9.47 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.305989 AGGCCGTTATTGCACATTATTG 57.694 40.909 0.00 0.00 0.00 1.90
22 23 3.699038 AGGCCGTTATTGCACATTATTGT 59.301 39.130 0.00 0.00 36.15 2.71
23 24 4.159506 AGGCCGTTATTGCACATTATTGTT 59.840 37.500 0.00 0.00 32.34 2.83
24 25 4.267452 GGCCGTTATTGCACATTATTGTTG 59.733 41.667 0.00 0.00 32.34 3.33
25 26 4.267452 GCCGTTATTGCACATTATTGTTGG 59.733 41.667 0.00 0.00 32.34 3.77
26 27 5.645624 CCGTTATTGCACATTATTGTTGGA 58.354 37.500 0.00 0.00 32.34 3.53
27 28 5.743398 CCGTTATTGCACATTATTGTTGGAG 59.257 40.000 0.00 0.00 32.34 3.86
28 29 6.404184 CCGTTATTGCACATTATTGTTGGAGA 60.404 38.462 0.00 0.00 32.34 3.71
29 30 7.195646 CGTTATTGCACATTATTGTTGGAGAT 58.804 34.615 0.00 0.00 32.34 2.75
30 31 7.166307 CGTTATTGCACATTATTGTTGGAGATG 59.834 37.037 0.00 0.00 32.34 2.90
31 32 4.374843 TGCACATTATTGTTGGAGATGC 57.625 40.909 0.00 0.00 32.34 3.91
32 33 4.018490 TGCACATTATTGTTGGAGATGCT 58.982 39.130 0.00 0.00 32.34 3.79
33 34 4.096833 TGCACATTATTGTTGGAGATGCTC 59.903 41.667 0.00 0.00 32.34 4.26
34 35 4.337555 GCACATTATTGTTGGAGATGCTCT 59.662 41.667 0.00 0.00 32.34 4.09
35 36 5.163581 GCACATTATTGTTGGAGATGCTCTT 60.164 40.000 0.00 0.00 32.34 2.85
36 37 6.038603 GCACATTATTGTTGGAGATGCTCTTA 59.961 38.462 0.00 0.00 32.34 2.10
37 38 7.637229 CACATTATTGTTGGAGATGCTCTTAG 58.363 38.462 0.00 0.00 32.34 2.18
38 39 7.281774 CACATTATTGTTGGAGATGCTCTTAGT 59.718 37.037 0.00 0.00 32.34 2.24
39 40 7.281774 ACATTATTGTTGGAGATGCTCTTAGTG 59.718 37.037 0.00 0.00 29.55 2.74
40 41 4.890158 TTGTTGGAGATGCTCTTAGTGA 57.110 40.909 0.00 0.00 0.00 3.41
41 42 5.426689 TTGTTGGAGATGCTCTTAGTGAT 57.573 39.130 0.00 0.00 0.00 3.06
42 43 5.426689 TGTTGGAGATGCTCTTAGTGATT 57.573 39.130 0.00 0.00 0.00 2.57
43 44 5.809001 TGTTGGAGATGCTCTTAGTGATTT 58.191 37.500 0.00 0.00 0.00 2.17
44 45 5.645067 TGTTGGAGATGCTCTTAGTGATTTG 59.355 40.000 0.00 0.00 0.00 2.32
45 46 4.194640 TGGAGATGCTCTTAGTGATTTGC 58.805 43.478 0.00 0.00 0.00 3.68
46 47 3.563390 GGAGATGCTCTTAGTGATTTGCC 59.437 47.826 0.00 0.00 0.00 4.52
47 48 4.450053 GAGATGCTCTTAGTGATTTGCCT 58.550 43.478 0.00 0.00 0.00 4.75
48 49 4.197750 AGATGCTCTTAGTGATTTGCCTG 58.802 43.478 0.00 0.00 0.00 4.85
49 50 3.423539 TGCTCTTAGTGATTTGCCTGT 57.576 42.857 0.00 0.00 0.00 4.00
50 51 3.338249 TGCTCTTAGTGATTTGCCTGTC 58.662 45.455 0.00 0.00 0.00 3.51
51 52 3.008375 TGCTCTTAGTGATTTGCCTGTCT 59.992 43.478 0.00 0.00 0.00 3.41
52 53 4.006319 GCTCTTAGTGATTTGCCTGTCTT 58.994 43.478 0.00 0.00 0.00 3.01
53 54 4.457257 GCTCTTAGTGATTTGCCTGTCTTT 59.543 41.667 0.00 0.00 0.00 2.52
54 55 5.618640 GCTCTTAGTGATTTGCCTGTCTTTG 60.619 44.000 0.00 0.00 0.00 2.77
55 56 5.620206 TCTTAGTGATTTGCCTGTCTTTGA 58.380 37.500 0.00 0.00 0.00 2.69
56 57 5.702670 TCTTAGTGATTTGCCTGTCTTTGAG 59.297 40.000 0.00 0.00 0.00 3.02
57 58 3.152341 AGTGATTTGCCTGTCTTTGAGG 58.848 45.455 0.00 0.00 0.00 3.86
58 59 2.887152 GTGATTTGCCTGTCTTTGAGGT 59.113 45.455 0.00 0.00 32.60 3.85
59 60 2.886523 TGATTTGCCTGTCTTTGAGGTG 59.113 45.455 0.00 0.00 32.60 4.00
60 61 2.435372 TTTGCCTGTCTTTGAGGTGT 57.565 45.000 0.00 0.00 32.60 4.16
61 62 3.569194 TTTGCCTGTCTTTGAGGTGTA 57.431 42.857 0.00 0.00 32.60 2.90
62 63 3.788227 TTGCCTGTCTTTGAGGTGTAT 57.212 42.857 0.00 0.00 32.60 2.29
63 64 3.334583 TGCCTGTCTTTGAGGTGTATC 57.665 47.619 0.00 0.00 32.60 2.24
64 65 2.906389 TGCCTGTCTTTGAGGTGTATCT 59.094 45.455 0.00 0.00 32.60 1.98
65 66 4.093743 TGCCTGTCTTTGAGGTGTATCTA 58.906 43.478 0.00 0.00 32.60 1.98
66 67 4.716784 TGCCTGTCTTTGAGGTGTATCTAT 59.283 41.667 0.00 0.00 32.60 1.98
67 68 5.189736 TGCCTGTCTTTGAGGTGTATCTATT 59.810 40.000 0.00 0.00 32.60 1.73
68 69 5.525378 GCCTGTCTTTGAGGTGTATCTATTG 59.475 44.000 0.00 0.00 32.60 1.90
69 70 6.644347 CCTGTCTTTGAGGTGTATCTATTGT 58.356 40.000 0.00 0.00 0.00 2.71
70 71 7.106239 CCTGTCTTTGAGGTGTATCTATTGTT 58.894 38.462 0.00 0.00 0.00 2.83
71 72 7.065085 CCTGTCTTTGAGGTGTATCTATTGTTG 59.935 40.741 0.00 0.00 0.00 3.33
72 73 7.450074 TGTCTTTGAGGTGTATCTATTGTTGT 58.550 34.615 0.00 0.00 0.00 3.32
73 74 8.590204 TGTCTTTGAGGTGTATCTATTGTTGTA 58.410 33.333 0.00 0.00 0.00 2.41
74 75 9.601217 GTCTTTGAGGTGTATCTATTGTTGTAT 57.399 33.333 0.00 0.00 0.00 2.29
91 92 7.921786 TGTTGTATTCTATGTCTTTTCCAGG 57.078 36.000 0.00 0.00 0.00 4.45
92 93 7.458397 TGTTGTATTCTATGTCTTTTCCAGGT 58.542 34.615 0.00 0.00 0.00 4.00
93 94 8.598916 TGTTGTATTCTATGTCTTTTCCAGGTA 58.401 33.333 0.00 0.00 0.00 3.08
94 95 9.099454 GTTGTATTCTATGTCTTTTCCAGGTAG 57.901 37.037 0.00 0.00 0.00 3.18
95 96 7.272978 TGTATTCTATGTCTTTTCCAGGTAGC 58.727 38.462 0.00 0.00 0.00 3.58
96 97 6.567602 ATTCTATGTCTTTTCCAGGTAGCT 57.432 37.500 0.00 0.00 0.00 3.32
97 98 5.344743 TCTATGTCTTTTCCAGGTAGCTG 57.655 43.478 15.13 15.13 0.00 4.24
98 99 4.777896 TCTATGTCTTTTCCAGGTAGCTGT 59.222 41.667 19.98 1.50 0.00 4.40
99 100 3.402628 TGTCTTTTCCAGGTAGCTGTC 57.597 47.619 19.98 3.30 0.00 3.51
100 101 2.288825 TGTCTTTTCCAGGTAGCTGTCG 60.289 50.000 19.98 6.52 0.00 4.35
101 102 1.079503 CTTTTCCAGGTAGCTGTCGC 58.920 55.000 19.98 0.00 0.00 5.19
102 103 0.669318 TTTTCCAGGTAGCTGTCGCG 60.669 55.000 19.98 0.00 42.32 5.87
103 104 1.812686 TTTCCAGGTAGCTGTCGCGT 61.813 55.000 19.98 0.00 42.32 6.01
104 105 1.812686 TTCCAGGTAGCTGTCGCGTT 61.813 55.000 19.98 0.00 42.32 4.84
105 106 0.961857 TCCAGGTAGCTGTCGCGTTA 60.962 55.000 19.98 0.00 42.32 3.18
106 107 0.525668 CCAGGTAGCTGTCGCGTTAG 60.526 60.000 19.98 7.02 42.32 2.34
107 108 0.170561 CAGGTAGCTGTCGCGTTAGT 59.829 55.000 13.89 0.05 42.32 2.24
108 109 0.450983 AGGTAGCTGTCGCGTTAGTC 59.549 55.000 5.77 2.74 42.32 2.59
109 110 0.860618 GGTAGCTGTCGCGTTAGTCG 60.861 60.000 5.77 0.00 42.32 4.18
110 111 0.860618 GTAGCTGTCGCGTTAGTCGG 60.861 60.000 5.77 0.00 42.32 4.79
111 112 1.020861 TAGCTGTCGCGTTAGTCGGA 61.021 55.000 5.77 0.00 42.32 4.55
112 113 1.443194 GCTGTCGCGTTAGTCGGAA 60.443 57.895 5.77 0.00 40.26 4.30
113 114 0.801067 GCTGTCGCGTTAGTCGGAAT 60.801 55.000 5.77 0.00 40.26 3.01
114 115 1.625616 CTGTCGCGTTAGTCGGAATT 58.374 50.000 5.77 0.00 40.26 2.17
115 116 1.320555 CTGTCGCGTTAGTCGGAATTG 59.679 52.381 5.77 0.00 40.26 2.32
116 117 1.068402 TGTCGCGTTAGTCGGAATTGA 60.068 47.619 5.77 0.00 40.26 2.57
117 118 1.319669 GTCGCGTTAGTCGGAATTGAC 59.680 52.381 5.77 0.00 40.26 3.18
118 119 0.293723 CGCGTTAGTCGGAATTGACG 59.706 55.000 0.00 8.88 43.70 4.35
119 120 1.621107 GCGTTAGTCGGAATTGACGA 58.379 50.000 14.97 0.00 43.70 4.20
120 121 2.190981 GCGTTAGTCGGAATTGACGAT 58.809 47.619 14.97 0.00 43.70 3.73
121 122 2.034842 GCGTTAGTCGGAATTGACGATG 60.035 50.000 14.97 0.00 43.70 3.84
122 123 2.034842 CGTTAGTCGGAATTGACGATGC 60.035 50.000 7.87 0.00 43.70 3.91
123 124 2.927477 GTTAGTCGGAATTGACGATGCA 59.073 45.455 5.29 0.00 43.70 3.96
124 125 1.645034 AGTCGGAATTGACGATGCAG 58.355 50.000 5.29 0.00 43.70 4.41
125 126 0.026803 GTCGGAATTGACGATGCAGC 59.973 55.000 5.29 0.00 42.82 5.25
126 127 0.108186 TCGGAATTGACGATGCAGCT 60.108 50.000 0.00 0.00 35.12 4.24
127 128 0.729116 CGGAATTGACGATGCAGCTT 59.271 50.000 0.00 0.00 0.00 3.74
128 129 1.530441 CGGAATTGACGATGCAGCTTG 60.530 52.381 0.00 0.00 0.00 4.01
129 130 1.739466 GGAATTGACGATGCAGCTTGA 59.261 47.619 0.00 0.00 0.00 3.02
130 131 2.223203 GGAATTGACGATGCAGCTTGAG 60.223 50.000 0.00 0.00 0.00 3.02
131 132 1.376543 ATTGACGATGCAGCTTGAGG 58.623 50.000 0.00 0.00 0.00 3.86
132 133 1.300971 TTGACGATGCAGCTTGAGGC 61.301 55.000 0.00 0.00 42.19 4.70
133 134 2.437359 ACGATGCAGCTTGAGGCC 60.437 61.111 0.00 0.00 43.05 5.19
134 135 2.437180 CGATGCAGCTTGAGGCCA 60.437 61.111 5.01 0.00 43.05 5.36
135 136 2.470362 CGATGCAGCTTGAGGCCAG 61.470 63.158 5.01 0.00 43.05 4.85
136 137 1.077930 GATGCAGCTTGAGGCCAGA 60.078 57.895 5.01 0.00 43.05 3.86
137 138 0.679002 GATGCAGCTTGAGGCCAGAA 60.679 55.000 5.01 0.00 43.05 3.02
138 139 0.680280 ATGCAGCTTGAGGCCAGAAG 60.680 55.000 5.01 7.53 43.05 2.85
139 140 1.002868 GCAGCTTGAGGCCAGAAGA 60.003 57.895 16.03 0.00 43.05 2.87
140 141 0.394080 GCAGCTTGAGGCCAGAAGAT 60.394 55.000 16.03 8.15 43.05 2.40
141 142 1.954258 GCAGCTTGAGGCCAGAAGATT 60.954 52.381 16.03 2.61 43.05 2.40
142 143 1.743958 CAGCTTGAGGCCAGAAGATTG 59.256 52.381 16.03 9.93 43.05 2.67
143 144 0.455005 GCTTGAGGCCAGAAGATTGC 59.545 55.000 16.03 1.18 34.27 3.56
144 145 1.101331 CTTGAGGCCAGAAGATTGCC 58.899 55.000 5.01 0.00 45.70 4.52
145 146 0.323725 TTGAGGCCAGAAGATTGCCC 60.324 55.000 5.01 0.00 46.55 5.36
146 147 1.304282 GAGGCCAGAAGATTGCCCA 59.696 57.895 5.01 0.00 46.55 5.36
147 148 0.750911 GAGGCCAGAAGATTGCCCAG 60.751 60.000 5.01 0.00 46.55 4.45
148 149 2.421399 GGCCAGAAGATTGCCCAGC 61.421 63.158 0.00 0.00 39.30 4.85
149 150 1.379576 GCCAGAAGATTGCCCAGCT 60.380 57.895 0.00 0.00 0.00 4.24
150 151 1.382692 GCCAGAAGATTGCCCAGCTC 61.383 60.000 0.00 0.00 0.00 4.09
151 152 1.094073 CCAGAAGATTGCCCAGCTCG 61.094 60.000 0.00 0.00 0.00 5.03
152 153 0.392193 CAGAAGATTGCCCAGCTCGT 60.392 55.000 0.00 0.00 0.00 4.18
153 154 1.134699 CAGAAGATTGCCCAGCTCGTA 60.135 52.381 0.00 0.00 0.00 3.43
154 155 1.765314 AGAAGATTGCCCAGCTCGTAT 59.235 47.619 0.00 0.00 0.00 3.06
155 156 1.869767 GAAGATTGCCCAGCTCGTATG 59.130 52.381 0.00 0.00 0.00 2.39
156 157 0.833287 AGATTGCCCAGCTCGTATGT 59.167 50.000 0.00 0.00 0.00 2.29
157 158 0.940126 GATTGCCCAGCTCGTATGTG 59.060 55.000 0.00 0.00 0.00 3.21
158 159 0.541392 ATTGCCCAGCTCGTATGTGA 59.459 50.000 0.00 0.00 0.00 3.58
159 160 0.541392 TTGCCCAGCTCGTATGTGAT 59.459 50.000 0.00 0.00 0.00 3.06
160 161 1.408969 TGCCCAGCTCGTATGTGATA 58.591 50.000 0.00 0.00 0.00 2.15
161 162 1.760029 TGCCCAGCTCGTATGTGATAA 59.240 47.619 0.00 0.00 0.00 1.75
162 163 2.368548 TGCCCAGCTCGTATGTGATAAT 59.631 45.455 0.00 0.00 0.00 1.28
163 164 2.738846 GCCCAGCTCGTATGTGATAATG 59.261 50.000 0.00 0.00 0.00 1.90
164 165 3.554960 GCCCAGCTCGTATGTGATAATGA 60.555 47.826 0.00 0.00 0.00 2.57
165 166 4.631131 CCCAGCTCGTATGTGATAATGAA 58.369 43.478 0.00 0.00 0.00 2.57
166 167 5.240891 CCCAGCTCGTATGTGATAATGAAT 58.759 41.667 0.00 0.00 0.00 2.57
167 168 5.702670 CCCAGCTCGTATGTGATAATGAATT 59.297 40.000 0.00 0.00 0.00 2.17
168 169 6.873605 CCCAGCTCGTATGTGATAATGAATTA 59.126 38.462 0.00 0.00 0.00 1.40
169 170 7.387673 CCCAGCTCGTATGTGATAATGAATTAA 59.612 37.037 0.00 0.00 0.00 1.40
170 171 8.939929 CCAGCTCGTATGTGATAATGAATTAAT 58.060 33.333 0.00 0.00 0.00 1.40
171 172 9.750882 CAGCTCGTATGTGATAATGAATTAATG 57.249 33.333 0.00 0.00 0.00 1.90
172 173 9.710900 AGCTCGTATGTGATAATGAATTAATGA 57.289 29.630 0.00 0.00 0.00 2.57
180 181 9.738832 TGTGATAATGAATTAATGATGCACTTG 57.261 29.630 0.00 0.00 0.00 3.16
181 182 9.740239 GTGATAATGAATTAATGATGCACTTGT 57.260 29.630 0.00 0.00 0.00 3.16
182 183 9.955208 TGATAATGAATTAATGATGCACTTGTC 57.045 29.630 0.00 0.00 0.00 3.18
183 184 9.110617 GATAATGAATTAATGATGCACTTGTCG 57.889 33.333 0.00 0.00 0.00 4.35
184 185 6.682423 ATGAATTAATGATGCACTTGTCGA 57.318 33.333 0.00 0.00 0.00 4.20
185 186 6.682423 TGAATTAATGATGCACTTGTCGAT 57.318 33.333 0.00 0.00 0.00 3.59
186 187 6.488817 TGAATTAATGATGCACTTGTCGATG 58.511 36.000 0.00 0.00 0.00 3.84
187 188 2.838386 AATGATGCACTTGTCGATGC 57.162 45.000 1.74 1.74 42.40 3.91
190 191 4.777384 TGCACTTGTCGATGCAGT 57.223 50.000 7.31 0.00 46.63 4.40
191 192 2.532186 TGCACTTGTCGATGCAGTC 58.468 52.632 7.31 0.00 46.63 3.51
192 193 0.033920 TGCACTTGTCGATGCAGTCT 59.966 50.000 7.31 0.00 46.63 3.24
193 194 1.151668 GCACTTGTCGATGCAGTCTT 58.848 50.000 3.89 0.00 41.65 3.01
194 195 1.127582 GCACTTGTCGATGCAGTCTTC 59.872 52.381 3.89 0.00 41.65 2.87
195 196 1.388093 CACTTGTCGATGCAGTCTTCG 59.612 52.381 0.98 0.98 40.09 3.79
196 197 1.269723 ACTTGTCGATGCAGTCTTCGA 59.730 47.619 6.05 6.05 43.59 3.71
206 207 3.481009 AGTCTTCGACTGAACGCTG 57.519 52.632 0.00 0.00 41.76 5.18
207 208 0.952280 AGTCTTCGACTGAACGCTGA 59.048 50.000 0.00 0.00 41.76 4.26
208 209 1.542030 AGTCTTCGACTGAACGCTGAT 59.458 47.619 0.00 0.00 41.76 2.90
209 210 2.747989 AGTCTTCGACTGAACGCTGATA 59.252 45.455 0.00 0.00 41.76 2.15
210 211 3.378742 AGTCTTCGACTGAACGCTGATAT 59.621 43.478 0.00 0.00 41.76 1.63
211 212 4.575236 AGTCTTCGACTGAACGCTGATATA 59.425 41.667 0.00 0.00 41.76 0.86
212 213 5.239744 AGTCTTCGACTGAACGCTGATATAT 59.760 40.000 0.00 0.00 41.76 0.86
213 214 5.915758 GTCTTCGACTGAACGCTGATATATT 59.084 40.000 0.00 0.00 0.00 1.28
214 215 5.915196 TCTTCGACTGAACGCTGATATATTG 59.085 40.000 0.00 0.00 0.00 1.90
215 216 3.981416 TCGACTGAACGCTGATATATTGC 59.019 43.478 0.00 0.00 0.00 3.56
216 217 3.735746 CGACTGAACGCTGATATATTGCA 59.264 43.478 10.76 0.00 0.00 4.08
217 218 4.143452 CGACTGAACGCTGATATATTGCAG 60.143 45.833 10.76 5.17 35.28 4.41
218 219 4.060900 ACTGAACGCTGATATATTGCAGG 58.939 43.478 10.76 2.30 32.83 4.85
219 220 4.060900 CTGAACGCTGATATATTGCAGGT 58.939 43.478 10.76 4.18 32.83 4.00
220 221 3.809279 TGAACGCTGATATATTGCAGGTG 59.191 43.478 10.76 0.00 32.83 4.00
221 222 3.475566 ACGCTGATATATTGCAGGTGT 57.524 42.857 10.76 0.00 32.83 4.16
222 223 3.393800 ACGCTGATATATTGCAGGTGTC 58.606 45.455 10.76 0.00 32.83 3.67
223 224 3.181466 ACGCTGATATATTGCAGGTGTCA 60.181 43.478 10.76 0.00 32.83 3.58
224 225 3.809279 CGCTGATATATTGCAGGTGTCAA 59.191 43.478 10.76 0.00 32.83 3.18
225 226 4.453478 CGCTGATATATTGCAGGTGTCAAT 59.547 41.667 10.76 0.00 37.79 2.57
226 227 5.390251 CGCTGATATATTGCAGGTGTCAATC 60.390 44.000 10.76 0.00 35.87 2.67
227 228 5.471116 GCTGATATATTGCAGGTGTCAATCA 59.529 40.000 4.17 0.00 35.87 2.57
228 229 6.016860 GCTGATATATTGCAGGTGTCAATCAA 60.017 38.462 4.17 0.00 35.87 2.57
229 230 7.469043 GCTGATATATTGCAGGTGTCAATCAAA 60.469 37.037 4.17 0.00 35.87 2.69
230 231 8.291191 TGATATATTGCAGGTGTCAATCAAAA 57.709 30.769 0.00 0.00 35.87 2.44
231 232 8.916062 TGATATATTGCAGGTGTCAATCAAAAT 58.084 29.630 0.00 0.00 35.87 1.82
232 233 9.188588 GATATATTGCAGGTGTCAATCAAAATG 57.811 33.333 0.00 0.00 35.87 2.32
233 234 4.669206 TTGCAGGTGTCAATCAAAATGT 57.331 36.364 0.00 0.00 0.00 2.71
234 235 4.669206 TGCAGGTGTCAATCAAAATGTT 57.331 36.364 0.00 0.00 0.00 2.71
235 236 5.781210 TGCAGGTGTCAATCAAAATGTTA 57.219 34.783 0.00 0.00 0.00 2.41
236 237 6.154203 TGCAGGTGTCAATCAAAATGTTAA 57.846 33.333 0.00 0.00 0.00 2.01
237 238 6.577103 TGCAGGTGTCAATCAAAATGTTAAA 58.423 32.000 0.00 0.00 0.00 1.52
238 239 6.700960 TGCAGGTGTCAATCAAAATGTTAAAG 59.299 34.615 0.00 0.00 0.00 1.85
239 240 6.922957 GCAGGTGTCAATCAAAATGTTAAAGA 59.077 34.615 0.00 0.00 0.00 2.52
240 241 7.437862 GCAGGTGTCAATCAAAATGTTAAAGAA 59.562 33.333 0.00 0.00 0.00 2.52
241 242 9.480053 CAGGTGTCAATCAAAATGTTAAAGAAT 57.520 29.630 0.00 0.00 0.00 2.40
247 248 9.134734 TCAATCAAAATGTTAAAGAATTACGGC 57.865 29.630 0.00 0.00 0.00 5.68
248 249 7.734538 ATCAAAATGTTAAAGAATTACGGCG 57.265 32.000 4.80 4.80 0.00 6.46
249 250 6.087522 TCAAAATGTTAAAGAATTACGGCGG 58.912 36.000 13.24 0.00 0.00 6.13
250 251 3.685836 ATGTTAAAGAATTACGGCGGC 57.314 42.857 13.24 0.00 0.00 6.53
251 252 2.702261 TGTTAAAGAATTACGGCGGCT 58.298 42.857 13.24 0.00 0.00 5.52
252 253 2.674357 TGTTAAAGAATTACGGCGGCTC 59.326 45.455 13.24 1.49 0.00 4.70
253 254 1.563111 TAAAGAATTACGGCGGCTCG 58.437 50.000 13.24 4.55 0.00 5.03
254 255 0.390735 AAAGAATTACGGCGGCTCGT 60.391 50.000 13.24 17.83 45.88 4.18
255 256 0.390735 AAGAATTACGGCGGCTCGTT 60.391 50.000 18.68 4.54 43.59 3.85
256 257 0.390735 AGAATTACGGCGGCTCGTTT 60.391 50.000 18.68 10.14 43.59 3.60
257 258 0.445043 GAATTACGGCGGCTCGTTTT 59.555 50.000 18.68 13.62 43.59 2.43
258 259 0.167251 AATTACGGCGGCTCGTTTTG 59.833 50.000 18.68 0.00 43.59 2.44
259 260 0.952010 ATTACGGCGGCTCGTTTTGT 60.952 50.000 18.68 0.00 43.59 2.83
260 261 1.559149 TTACGGCGGCTCGTTTTGTC 61.559 55.000 18.68 0.00 43.59 3.18
261 262 2.696409 TACGGCGGCTCGTTTTGTCA 62.696 55.000 18.68 1.00 43.59 3.58
262 263 2.887889 CGGCGGCTCGTTTTGTCAA 61.888 57.895 7.61 0.00 0.00 3.18
263 264 1.370051 GGCGGCTCGTTTTGTCAAC 60.370 57.895 0.00 0.00 0.00 3.18
264 265 1.721133 GCGGCTCGTTTTGTCAACG 60.721 57.895 0.63 0.63 44.29 4.10
265 266 1.083015 CGGCTCGTTTTGTCAACGG 60.083 57.895 7.23 0.36 43.24 4.44
266 267 1.768112 CGGCTCGTTTTGTCAACGGT 61.768 55.000 7.23 0.00 43.24 4.83
267 268 0.316689 GGCTCGTTTTGTCAACGGTG 60.317 55.000 7.23 0.00 43.24 4.94
268 269 0.375803 GCTCGTTTTGTCAACGGTGT 59.624 50.000 0.00 0.00 43.24 4.16
269 270 1.854434 GCTCGTTTTGTCAACGGTGTG 60.854 52.381 0.00 0.00 43.24 3.82
270 271 1.661617 CTCGTTTTGTCAACGGTGTGA 59.338 47.619 0.00 0.00 43.24 3.58
271 272 2.281517 TCGTTTTGTCAACGGTGTGAT 58.718 42.857 0.00 0.00 43.24 3.06
272 273 2.285756 TCGTTTTGTCAACGGTGTGATC 59.714 45.455 0.00 0.00 43.24 2.92
273 274 2.635444 GTTTTGTCAACGGTGTGATCG 58.365 47.619 0.00 0.00 0.00 3.69
274 275 1.942677 TTTGTCAACGGTGTGATCGT 58.057 45.000 0.00 0.00 43.14 3.73
275 276 1.493772 TTGTCAACGGTGTGATCGTC 58.506 50.000 0.00 0.00 40.18 4.20
276 277 0.671796 TGTCAACGGTGTGATCGTCT 59.328 50.000 0.00 0.00 40.18 4.18
277 278 1.060713 GTCAACGGTGTGATCGTCTG 58.939 55.000 0.00 0.00 40.18 3.51
278 279 0.038618 TCAACGGTGTGATCGTCTGG 60.039 55.000 0.00 0.00 40.18 3.86
279 280 0.319555 CAACGGTGTGATCGTCTGGT 60.320 55.000 0.00 0.00 40.18 4.00
280 281 0.319555 AACGGTGTGATCGTCTGGTG 60.320 55.000 0.00 0.00 40.18 4.17
281 282 1.446099 CGGTGTGATCGTCTGGTGG 60.446 63.158 0.00 0.00 0.00 4.61
282 283 1.671742 GGTGTGATCGTCTGGTGGT 59.328 57.895 0.00 0.00 0.00 4.16
283 284 0.389948 GGTGTGATCGTCTGGTGGTC 60.390 60.000 0.00 0.00 0.00 4.02
284 285 0.603569 GTGTGATCGTCTGGTGGTCT 59.396 55.000 0.00 0.00 0.00 3.85
285 286 1.816835 GTGTGATCGTCTGGTGGTCTA 59.183 52.381 0.00 0.00 0.00 2.59
286 287 2.092323 TGTGATCGTCTGGTGGTCTAG 58.908 52.381 0.00 0.00 0.00 2.43
287 288 1.405821 GTGATCGTCTGGTGGTCTAGG 59.594 57.143 0.00 0.00 0.00 3.02
288 289 1.283905 TGATCGTCTGGTGGTCTAGGA 59.716 52.381 0.00 0.00 0.00 2.94
289 290 2.291346 TGATCGTCTGGTGGTCTAGGAA 60.291 50.000 0.00 0.00 0.00 3.36
290 291 1.542492 TCGTCTGGTGGTCTAGGAAC 58.458 55.000 0.00 0.00 0.00 3.62
291 292 0.531200 CGTCTGGTGGTCTAGGAACC 59.469 60.000 0.00 0.00 39.94 3.62
292 293 1.891450 CGTCTGGTGGTCTAGGAACCT 60.891 57.143 9.78 0.00 40.20 3.50
293 294 2.258109 GTCTGGTGGTCTAGGAACCTT 58.742 52.381 0.00 0.00 40.20 3.50
294 295 2.028020 GTCTGGTGGTCTAGGAACCTTG 60.028 54.545 0.00 0.00 40.20 3.61
295 296 2.158219 TCTGGTGGTCTAGGAACCTTGA 60.158 50.000 0.00 0.00 40.20 3.02
296 297 1.975680 TGGTGGTCTAGGAACCTTGAC 59.024 52.381 20.98 20.98 44.15 3.18
297 298 1.067071 GGTGGTCTAGGAACCTTGACG 60.067 57.143 21.78 0.00 45.21 4.35
298 299 1.617357 GTGGTCTAGGAACCTTGACGT 59.383 52.381 21.78 0.00 45.21 4.34
299 300 2.821969 GTGGTCTAGGAACCTTGACGTA 59.178 50.000 21.78 14.22 45.21 3.57
300 301 3.256631 GTGGTCTAGGAACCTTGACGTAA 59.743 47.826 21.78 11.97 45.21 3.18
301 302 4.081807 GTGGTCTAGGAACCTTGACGTAAT 60.082 45.833 21.78 0.00 45.21 1.89
302 303 4.529377 TGGTCTAGGAACCTTGACGTAATT 59.471 41.667 21.78 0.00 45.21 1.40
303 304 5.012354 TGGTCTAGGAACCTTGACGTAATTT 59.988 40.000 21.78 0.00 45.21 1.82
304 305 5.936372 GGTCTAGGAACCTTGACGTAATTTT 59.064 40.000 21.78 0.00 45.21 1.82
305 306 7.099120 GGTCTAGGAACCTTGACGTAATTTTA 58.901 38.462 21.78 0.00 45.21 1.52
306 307 7.603784 GGTCTAGGAACCTTGACGTAATTTTAA 59.396 37.037 21.78 0.00 45.21 1.52
307 308 9.159364 GTCTAGGAACCTTGACGTAATTTTAAT 57.841 33.333 16.52 0.00 38.54 1.40
308 309 9.729281 TCTAGGAACCTTGACGTAATTTTAATT 57.271 29.630 0.00 0.00 0.00 1.40
335 336 7.781548 ATTAACGATGCTTTATACTTTCGGT 57.218 32.000 0.00 0.00 0.00 4.69
336 337 5.464965 AACGATGCTTTATACTTTCGGTG 57.535 39.130 0.00 0.00 0.00 4.94
337 338 4.751060 ACGATGCTTTATACTTTCGGTGA 58.249 39.130 0.00 0.00 0.00 4.02
338 339 5.172934 ACGATGCTTTATACTTTCGGTGAA 58.827 37.500 0.00 0.00 0.00 3.18
339 340 5.063060 ACGATGCTTTATACTTTCGGTGAAC 59.937 40.000 0.00 0.00 0.00 3.18
340 341 5.291128 CGATGCTTTATACTTTCGGTGAACT 59.709 40.000 0.00 0.00 0.00 3.01
341 342 6.183360 CGATGCTTTATACTTTCGGTGAACTT 60.183 38.462 0.00 0.00 0.00 2.66
342 343 6.870971 TGCTTTATACTTTCGGTGAACTTT 57.129 33.333 0.00 0.00 0.00 2.66
343 344 7.266922 TGCTTTATACTTTCGGTGAACTTTT 57.733 32.000 0.00 0.00 0.00 2.27
344 345 8.380743 TGCTTTATACTTTCGGTGAACTTTTA 57.619 30.769 0.00 0.00 0.00 1.52
345 346 9.005777 TGCTTTATACTTTCGGTGAACTTTTAT 57.994 29.630 0.00 0.00 0.00 1.40
394 395 6.749923 AAAGAGAAATCTCATCTTTTCCCG 57.250 37.500 12.65 0.00 45.21 5.14
395 396 5.428184 AGAGAAATCTCATCTTTTCCCGT 57.572 39.130 12.65 0.00 45.21 5.28
396 397 5.181748 AGAGAAATCTCATCTTTTCCCGTG 58.818 41.667 12.65 0.00 45.21 4.94
397 398 5.046304 AGAGAAATCTCATCTTTTCCCGTGA 60.046 40.000 12.65 0.00 45.21 4.35
398 399 5.560724 AGAAATCTCATCTTTTCCCGTGAA 58.439 37.500 0.00 0.00 33.30 3.18
399 400 5.412904 AGAAATCTCATCTTTTCCCGTGAAC 59.587 40.000 0.00 0.00 33.30 3.18
400 401 3.762407 TCTCATCTTTTCCCGTGAACA 57.238 42.857 0.00 0.00 0.00 3.18
401 402 3.664107 TCTCATCTTTTCCCGTGAACAG 58.336 45.455 0.00 0.00 30.96 3.16
402 403 3.323691 TCTCATCTTTTCCCGTGAACAGA 59.676 43.478 0.00 0.00 40.54 3.41
403 404 4.065088 CTCATCTTTTCCCGTGAACAGAA 58.935 43.478 0.60 0.00 39.89 3.02
404 405 4.456535 TCATCTTTTCCCGTGAACAGAAA 58.543 39.130 0.60 0.00 39.89 2.52
405 406 4.515191 TCATCTTTTCCCGTGAACAGAAAG 59.485 41.667 0.60 0.00 39.89 2.62
406 407 4.145365 TCTTTTCCCGTGAACAGAAAGA 57.855 40.909 0.00 0.00 35.04 2.52
407 408 4.714632 TCTTTTCCCGTGAACAGAAAGAT 58.285 39.130 0.00 0.00 35.04 2.40
408 409 5.860611 TCTTTTCCCGTGAACAGAAAGATA 58.139 37.500 0.00 0.00 35.04 1.98
409 410 6.292923 TCTTTTCCCGTGAACAGAAAGATAA 58.707 36.000 0.00 0.00 35.04 1.75
410 411 6.426937 TCTTTTCCCGTGAACAGAAAGATAAG 59.573 38.462 0.00 0.00 35.04 1.73
411 412 5.477607 TTCCCGTGAACAGAAAGATAAGA 57.522 39.130 0.00 0.00 0.00 2.10
412 413 4.817517 TCCCGTGAACAGAAAGATAAGAC 58.182 43.478 0.00 0.00 0.00 3.01
413 414 4.282449 TCCCGTGAACAGAAAGATAAGACA 59.718 41.667 0.00 0.00 0.00 3.41
414 415 5.046591 TCCCGTGAACAGAAAGATAAGACAT 60.047 40.000 0.00 0.00 0.00 3.06
415 416 5.643777 CCCGTGAACAGAAAGATAAGACATT 59.356 40.000 0.00 0.00 0.00 2.71
416 417 6.183360 CCCGTGAACAGAAAGATAAGACATTC 60.183 42.308 0.00 0.00 0.00 2.67
417 418 6.368791 CCGTGAACAGAAAGATAAGACATTCA 59.631 38.462 0.00 0.00 0.00 2.57
418 419 7.412346 CCGTGAACAGAAAGATAAGACATTCAG 60.412 40.741 0.00 0.00 0.00 3.02
419 420 7.116948 CGTGAACAGAAAGATAAGACATTCAGT 59.883 37.037 0.00 0.00 0.00 3.41
428 429 2.460330 GACATTCAGTCACGCTGGG 58.540 57.895 0.00 0.00 46.77 4.45
429 430 1.003355 ACATTCAGTCACGCTGGGG 60.003 57.895 0.00 0.00 45.08 4.96
430 431 2.045926 ATTCAGTCACGCTGGGGC 60.046 61.111 0.00 0.00 45.08 5.80
431 432 2.894257 ATTCAGTCACGCTGGGGCA 61.894 57.895 0.00 0.00 45.08 5.36
432 433 2.809861 ATTCAGTCACGCTGGGGCAG 62.810 60.000 0.00 0.00 45.08 4.85
474 475 2.404923 TGGTTGGTTTTCTCGTGTGA 57.595 45.000 0.00 0.00 0.00 3.58
480 481 5.449999 GGTTGGTTTTCTCGTGTGATTTCTT 60.450 40.000 0.00 0.00 0.00 2.52
497 498 3.781079 TCTTTGTTGCTTCAACCACTG 57.219 42.857 7.17 0.00 42.96 3.66
498 499 3.351740 TCTTTGTTGCTTCAACCACTGA 58.648 40.909 7.17 0.00 42.96 3.41
499 500 3.128589 TCTTTGTTGCTTCAACCACTGAC 59.871 43.478 7.17 0.00 42.96 3.51
559 564 4.452733 CCACTTCCTCCGTCGCCC 62.453 72.222 0.00 0.00 0.00 6.13
584 597 1.412710 TCTATTCCTCGTGGATGTGCC 59.587 52.381 7.11 0.00 42.81 5.01
585 598 1.414181 CTATTCCTCGTGGATGTGCCT 59.586 52.381 7.11 0.00 42.81 4.75
586 599 0.179000 ATTCCTCGTGGATGTGCCTC 59.821 55.000 7.11 0.00 42.81 4.70
587 600 0.904865 TTCCTCGTGGATGTGCCTCT 60.905 55.000 7.11 0.00 42.81 3.69
711 737 2.043953 GCATTCCACCCACCCTCC 60.044 66.667 0.00 0.00 0.00 4.30
733 759 0.606401 CCGGTCTCCAGCATTGTTGT 60.606 55.000 0.00 0.00 0.00 3.32
736 762 1.537202 GGTCTCCAGCATTGTTGTGAC 59.463 52.381 12.20 12.20 0.00 3.67
801 830 2.901192 TGATTCGGTGAGTCCAAGGTTA 59.099 45.455 0.00 0.00 35.57 2.85
975 1070 0.461339 CCGTTATCCACCCTTGTCGG 60.461 60.000 0.00 0.00 0.00 4.79
1042 1163 4.135153 CCTCCAGCACCGTCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
1088 1212 4.916041 ACAAACTCAAGGATCATCTGGA 57.084 40.909 0.00 0.00 0.00 3.86
1189 1313 2.351738 GCACTCAACGGCTTATTTGCTT 60.352 45.455 0.00 0.00 0.00 3.91
1288 1418 1.559682 GAGAAGGCCACCAGGTGATAA 59.440 52.381 22.37 0.00 35.23 1.75
1301 1431 3.056891 CAGGTGATAACGCCCAACATTTT 60.057 43.478 0.00 0.00 46.81 1.82
1390 1520 2.270527 GCCTCCTCAAGACAGGCC 59.729 66.667 0.00 0.00 46.20 5.19
1394 1524 1.202330 CTCCTCAAGACAGGCCTCAT 58.798 55.000 0.00 0.00 32.91 2.90
1415 1545 0.432361 GCGAACGTCGTTACCTTCAC 59.568 55.000 11.26 0.00 42.81 3.18
1542 1672 0.700564 TCCTCAAGGGCTTCTGCAAT 59.299 50.000 0.00 0.00 41.91 3.56
1567 1697 0.036010 GAGGAGCCAGCTTGCACTTA 60.036 55.000 12.92 0.00 0.00 2.24
1723 1858 2.347490 GGGTCGTGCCTGATGTGT 59.653 61.111 0.00 0.00 37.43 3.72
1791 1926 3.161866 GGACAAGGCAAAATTGGTCCTA 58.838 45.455 10.31 0.00 31.11 2.94
1792 1927 3.576550 GGACAAGGCAAAATTGGTCCTAA 59.423 43.478 10.31 0.00 31.11 2.69
1899 2034 2.036862 AGAGGTCGTTAGGTTGTTGGAC 59.963 50.000 0.00 0.00 0.00 4.02
1917 2052 3.569701 TGGACAAAATGAGAAGTCAAGGC 59.430 43.478 0.00 0.00 35.88 4.35
2184 2319 6.207221 TGATTAATGCATATGCTAAGTGTGGG 59.793 38.462 27.13 0.00 42.66 4.61
2313 2902 6.351033 GCATGATGGATGATGCTATGGAAAAT 60.351 38.462 0.00 0.00 42.87 1.82
2411 4155 6.395629 ATCATGGTGATTTCTTGAAAGCAAG 58.604 36.000 14.35 0.00 42.50 4.01
2545 4458 4.261197 GGGCTATTTTCGTCATGGTGATTC 60.261 45.833 0.00 0.00 0.00 2.52
2546 4459 4.261197 GGCTATTTTCGTCATGGTGATTCC 60.261 45.833 0.00 0.00 0.00 3.01
2547 4460 4.576463 GCTATTTTCGTCATGGTGATTCCT 59.424 41.667 0.00 0.00 37.07 3.36
2548 4461 5.066505 GCTATTTTCGTCATGGTGATTCCTT 59.933 40.000 0.00 0.00 37.07 3.36
2549 4462 6.260050 GCTATTTTCGTCATGGTGATTCCTTA 59.740 38.462 0.00 0.00 37.07 2.69
2550 4463 7.201696 GCTATTTTCGTCATGGTGATTCCTTAA 60.202 37.037 0.00 0.00 37.07 1.85
2551 4464 6.885952 TTTTCGTCATGGTGATTCCTTAAA 57.114 33.333 0.00 0.00 37.07 1.52
2552 4465 6.885952 TTTCGTCATGGTGATTCCTTAAAA 57.114 33.333 0.00 0.00 37.07 1.52
2553 4466 6.494893 TTCGTCATGGTGATTCCTTAAAAG 57.505 37.500 0.00 0.00 37.07 2.27
2554 4467 4.394920 TCGTCATGGTGATTCCTTAAAAGC 59.605 41.667 0.00 0.00 37.07 3.51
2853 4781 4.804665 GGCGAGAGTGTTAACCTTTATCTC 59.195 45.833 2.48 7.63 0.00 2.75
3011 4961 1.116308 GAAGCTACTCCCTCTGTCCC 58.884 60.000 0.00 0.00 0.00 4.46
3023 4973 5.285401 TCCCTCTGTCCCAATATAAGTGAA 58.715 41.667 0.00 0.00 0.00 3.18
3080 5030 7.323049 TCAAAAACACTTATTTTGAGACGGA 57.677 32.000 9.63 0.00 46.34 4.69
3081 5031 7.414436 TCAAAAACACTTATTTTGAGACGGAG 58.586 34.615 9.63 0.00 46.34 4.63
3082 5032 5.941948 AAACACTTATTTTGAGACGGAGG 57.058 39.130 0.00 0.00 0.00 4.30
3083 5033 3.939066 ACACTTATTTTGAGACGGAGGG 58.061 45.455 0.00 0.00 0.00 4.30
3084 5034 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3085 5035 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3086 5036 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
3087 5037 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
3088 5038 5.482878 ACTTATTTTGAGACGGAGGGAGTAA 59.517 40.000 0.00 0.00 0.00 2.24
3089 5039 4.903045 ATTTTGAGACGGAGGGAGTAAA 57.097 40.909 0.00 0.00 0.00 2.01
3090 5040 4.903045 TTTTGAGACGGAGGGAGTAAAT 57.097 40.909 0.00 0.00 0.00 1.40
3095 5045 4.773674 TGAGACGGAGGGAGTAAATGTAAA 59.226 41.667 0.00 0.00 0.00 2.01
3129 5079 9.507280 GGTACTTCAGTTTAGTTTTTGGTAAAC 57.493 33.333 0.00 0.00 38.77 2.01
3152 5102 2.431454 TGCATGTCGGCATCAAAGTAA 58.569 42.857 0.00 0.00 39.25 2.24
3164 5114 9.656040 TCGGCATCAAAGTAAACTAAGTAATTA 57.344 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.699038 ACAATAATGTGCAATAACGGCCT 59.301 39.130 0.00 0.00 38.69 5.19
1 2 4.040445 ACAATAATGTGCAATAACGGCC 57.960 40.909 0.00 0.00 38.69 6.13
2 3 4.267452 CCAACAATAATGTGCAATAACGGC 59.733 41.667 0.00 0.00 40.46 5.68
3 4 5.645624 TCCAACAATAATGTGCAATAACGG 58.354 37.500 0.00 0.00 40.46 4.44
4 5 6.550843 TCTCCAACAATAATGTGCAATAACG 58.449 36.000 0.00 0.00 40.46 3.18
5 6 7.043192 GCATCTCCAACAATAATGTGCAATAAC 60.043 37.037 0.00 0.00 40.46 1.89
6 7 6.979817 GCATCTCCAACAATAATGTGCAATAA 59.020 34.615 0.00 0.00 40.46 1.40
7 8 6.321945 AGCATCTCCAACAATAATGTGCAATA 59.678 34.615 0.00 0.00 40.46 1.90
8 9 5.128171 AGCATCTCCAACAATAATGTGCAAT 59.872 36.000 0.00 0.00 40.46 3.56
9 10 4.463539 AGCATCTCCAACAATAATGTGCAA 59.536 37.500 0.00 0.00 40.46 4.08
10 11 4.018490 AGCATCTCCAACAATAATGTGCA 58.982 39.130 0.00 0.00 40.46 4.57
11 12 4.604976 GAGCATCTCCAACAATAATGTGC 58.395 43.478 0.00 0.00 40.46 4.57
27 28 3.944015 ACAGGCAAATCACTAAGAGCATC 59.056 43.478 0.00 0.00 0.00 3.91
28 29 3.944015 GACAGGCAAATCACTAAGAGCAT 59.056 43.478 0.00 0.00 0.00 3.79
29 30 3.008375 AGACAGGCAAATCACTAAGAGCA 59.992 43.478 0.00 0.00 0.00 4.26
30 31 3.604582 AGACAGGCAAATCACTAAGAGC 58.395 45.455 0.00 0.00 0.00 4.09
31 32 5.702670 TCAAAGACAGGCAAATCACTAAGAG 59.297 40.000 0.00 0.00 0.00 2.85
32 33 5.620206 TCAAAGACAGGCAAATCACTAAGA 58.380 37.500 0.00 0.00 0.00 2.10
33 34 5.106396 CCTCAAAGACAGGCAAATCACTAAG 60.106 44.000 0.00 0.00 0.00 2.18
34 35 4.761739 CCTCAAAGACAGGCAAATCACTAA 59.238 41.667 0.00 0.00 0.00 2.24
35 36 4.202461 ACCTCAAAGACAGGCAAATCACTA 60.202 41.667 0.00 0.00 33.84 2.74
36 37 3.152341 CCTCAAAGACAGGCAAATCACT 58.848 45.455 0.00 0.00 0.00 3.41
37 38 2.887152 ACCTCAAAGACAGGCAAATCAC 59.113 45.455 0.00 0.00 33.84 3.06
38 39 2.886523 CACCTCAAAGACAGGCAAATCA 59.113 45.455 0.00 0.00 33.84 2.57
39 40 2.887152 ACACCTCAAAGACAGGCAAATC 59.113 45.455 0.00 0.00 33.84 2.17
40 41 2.949447 ACACCTCAAAGACAGGCAAAT 58.051 42.857 0.00 0.00 33.84 2.32
41 42 2.435372 ACACCTCAAAGACAGGCAAA 57.565 45.000 0.00 0.00 33.84 3.68
42 43 3.327757 AGATACACCTCAAAGACAGGCAA 59.672 43.478 0.00 0.00 33.84 4.52
43 44 2.906389 AGATACACCTCAAAGACAGGCA 59.094 45.455 0.00 0.00 33.84 4.75
44 45 3.618690 AGATACACCTCAAAGACAGGC 57.381 47.619 0.00 0.00 33.84 4.85
45 46 6.644347 ACAATAGATACACCTCAAAGACAGG 58.356 40.000 0.00 0.00 37.03 4.00
46 47 7.604164 ACAACAATAGATACACCTCAAAGACAG 59.396 37.037 0.00 0.00 0.00 3.51
47 48 7.450074 ACAACAATAGATACACCTCAAAGACA 58.550 34.615 0.00 0.00 0.00 3.41
48 49 7.907214 ACAACAATAGATACACCTCAAAGAC 57.093 36.000 0.00 0.00 0.00 3.01
65 66 8.960591 CCTGGAAAAGACATAGAATACAACAAT 58.039 33.333 0.00 0.00 0.00 2.71
66 67 7.942341 ACCTGGAAAAGACATAGAATACAACAA 59.058 33.333 0.00 0.00 0.00 2.83
67 68 7.458397 ACCTGGAAAAGACATAGAATACAACA 58.542 34.615 0.00 0.00 0.00 3.33
68 69 7.923414 ACCTGGAAAAGACATAGAATACAAC 57.077 36.000 0.00 0.00 0.00 3.32
69 70 7.769044 GCTACCTGGAAAAGACATAGAATACAA 59.231 37.037 0.00 0.00 0.00 2.41
70 71 7.125811 AGCTACCTGGAAAAGACATAGAATACA 59.874 37.037 0.00 0.00 0.00 2.29
71 72 7.439655 CAGCTACCTGGAAAAGACATAGAATAC 59.560 40.741 0.00 0.00 35.38 1.89
72 73 7.125811 ACAGCTACCTGGAAAAGACATAGAATA 59.874 37.037 0.00 0.00 43.53 1.75
73 74 6.069963 ACAGCTACCTGGAAAAGACATAGAAT 60.070 38.462 0.00 0.00 43.53 2.40
74 75 5.248477 ACAGCTACCTGGAAAAGACATAGAA 59.752 40.000 0.00 0.00 43.53 2.10
75 76 4.777896 ACAGCTACCTGGAAAAGACATAGA 59.222 41.667 0.00 0.00 43.53 1.98
76 77 5.091261 ACAGCTACCTGGAAAAGACATAG 57.909 43.478 0.00 0.00 43.53 2.23
77 78 4.381612 CGACAGCTACCTGGAAAAGACATA 60.382 45.833 0.00 0.00 43.53 2.29
78 79 3.617531 CGACAGCTACCTGGAAAAGACAT 60.618 47.826 0.00 0.00 43.53 3.06
79 80 2.288825 CGACAGCTACCTGGAAAAGACA 60.289 50.000 0.00 0.00 43.53 3.41
80 81 2.338500 CGACAGCTACCTGGAAAAGAC 58.662 52.381 0.00 0.00 43.53 3.01
81 82 1.337823 GCGACAGCTACCTGGAAAAGA 60.338 52.381 0.00 0.00 43.53 2.52
82 83 1.079503 GCGACAGCTACCTGGAAAAG 58.920 55.000 0.00 0.00 43.53 2.27
83 84 0.669318 CGCGACAGCTACCTGGAAAA 60.669 55.000 0.00 0.00 43.53 2.29
84 85 1.080093 CGCGACAGCTACCTGGAAA 60.080 57.895 0.00 0.00 43.53 3.13
85 86 1.812686 AACGCGACAGCTACCTGGAA 61.813 55.000 15.93 0.00 43.53 3.53
86 87 0.961857 TAACGCGACAGCTACCTGGA 60.962 55.000 15.93 0.00 43.53 3.86
87 88 0.525668 CTAACGCGACAGCTACCTGG 60.526 60.000 15.93 0.00 43.53 4.45
88 89 0.170561 ACTAACGCGACAGCTACCTG 59.829 55.000 15.93 0.00 44.80 4.00
89 90 0.450983 GACTAACGCGACAGCTACCT 59.549 55.000 15.93 0.00 42.32 3.08
90 91 0.860618 CGACTAACGCGACAGCTACC 60.861 60.000 15.93 0.00 42.32 3.18
91 92 0.860618 CCGACTAACGCGACAGCTAC 60.861 60.000 15.93 3.89 42.32 3.58
92 93 1.020861 TCCGACTAACGCGACAGCTA 61.021 55.000 15.93 0.00 42.32 3.32
93 94 1.859427 TTCCGACTAACGCGACAGCT 61.859 55.000 15.93 0.00 42.32 4.24
94 95 0.801067 ATTCCGACTAACGCGACAGC 60.801 55.000 15.93 4.75 41.07 4.40
95 96 1.320555 CAATTCCGACTAACGCGACAG 59.679 52.381 15.93 11.94 41.07 3.51
96 97 1.068402 TCAATTCCGACTAACGCGACA 60.068 47.619 15.93 0.00 41.07 4.35
97 98 1.319669 GTCAATTCCGACTAACGCGAC 59.680 52.381 15.93 0.00 41.07 5.19
98 99 1.621107 GTCAATTCCGACTAACGCGA 58.379 50.000 15.93 0.00 41.07 5.87
99 100 0.293723 CGTCAATTCCGACTAACGCG 59.706 55.000 3.53 3.53 41.07 6.01
100 101 1.621107 TCGTCAATTCCGACTAACGC 58.379 50.000 0.00 0.00 41.07 4.84
101 102 2.034842 GCATCGTCAATTCCGACTAACG 60.035 50.000 0.00 0.00 37.12 3.18
102 103 2.927477 TGCATCGTCAATTCCGACTAAC 59.073 45.455 0.00 0.00 37.12 2.34
103 104 3.186909 CTGCATCGTCAATTCCGACTAA 58.813 45.455 0.00 0.00 37.12 2.24
104 105 2.809446 CTGCATCGTCAATTCCGACTA 58.191 47.619 0.00 0.00 37.12 2.59
105 106 1.645034 CTGCATCGTCAATTCCGACT 58.355 50.000 0.00 0.00 37.12 4.18
106 107 0.026803 GCTGCATCGTCAATTCCGAC 59.973 55.000 0.00 0.00 37.12 4.79
107 108 0.108186 AGCTGCATCGTCAATTCCGA 60.108 50.000 1.02 0.00 38.89 4.55
108 109 0.729116 AAGCTGCATCGTCAATTCCG 59.271 50.000 1.02 0.00 0.00 4.30
109 110 1.739466 TCAAGCTGCATCGTCAATTCC 59.261 47.619 1.02 0.00 0.00 3.01
110 111 2.223203 CCTCAAGCTGCATCGTCAATTC 60.223 50.000 1.02 0.00 0.00 2.17
111 112 1.741706 CCTCAAGCTGCATCGTCAATT 59.258 47.619 1.02 0.00 0.00 2.32
112 113 1.376543 CCTCAAGCTGCATCGTCAAT 58.623 50.000 1.02 0.00 0.00 2.57
113 114 1.300971 GCCTCAAGCTGCATCGTCAA 61.301 55.000 1.02 0.00 38.99 3.18
114 115 1.742880 GCCTCAAGCTGCATCGTCA 60.743 57.895 1.02 0.00 38.99 4.35
115 116 2.467826 GGCCTCAAGCTGCATCGTC 61.468 63.158 1.02 0.00 43.05 4.20
116 117 2.437359 GGCCTCAAGCTGCATCGT 60.437 61.111 1.02 0.00 43.05 3.73
117 118 2.437180 TGGCCTCAAGCTGCATCG 60.437 61.111 3.32 0.00 43.05 3.84
118 119 0.679002 TTCTGGCCTCAAGCTGCATC 60.679 55.000 3.32 0.00 43.05 3.91
119 120 0.680280 CTTCTGGCCTCAAGCTGCAT 60.680 55.000 3.32 0.00 43.05 3.96
120 121 1.303074 CTTCTGGCCTCAAGCTGCA 60.303 57.895 3.32 0.00 43.05 4.41
121 122 0.394080 ATCTTCTGGCCTCAAGCTGC 60.394 55.000 3.32 0.00 43.05 5.25
122 123 1.743958 CAATCTTCTGGCCTCAAGCTG 59.256 52.381 3.32 3.43 43.05 4.24
123 124 1.954258 GCAATCTTCTGGCCTCAAGCT 60.954 52.381 3.32 0.00 43.05 3.74
124 125 0.455005 GCAATCTTCTGGCCTCAAGC 59.545 55.000 3.32 0.00 42.60 4.01
125 126 1.101331 GGCAATCTTCTGGCCTCAAG 58.899 55.000 3.32 6.08 44.32 3.02
126 127 3.271250 GGCAATCTTCTGGCCTCAA 57.729 52.632 3.32 0.00 44.32 3.02
131 132 1.379576 AGCTGGGCAATCTTCTGGC 60.380 57.895 0.00 0.00 41.03 4.85
132 133 1.094073 CGAGCTGGGCAATCTTCTGG 61.094 60.000 0.00 0.00 0.00 3.86
133 134 0.392193 ACGAGCTGGGCAATCTTCTG 60.392 55.000 0.00 0.00 0.00 3.02
134 135 1.195115 TACGAGCTGGGCAATCTTCT 58.805 50.000 0.00 0.00 0.00 2.85
135 136 1.869767 CATACGAGCTGGGCAATCTTC 59.130 52.381 0.00 0.00 0.00 2.87
136 137 1.210478 ACATACGAGCTGGGCAATCTT 59.790 47.619 0.00 0.00 0.00 2.40
137 138 0.833287 ACATACGAGCTGGGCAATCT 59.167 50.000 0.00 0.00 0.00 2.40
138 139 0.940126 CACATACGAGCTGGGCAATC 59.060 55.000 0.00 0.00 0.00 2.67
139 140 0.541392 TCACATACGAGCTGGGCAAT 59.459 50.000 0.00 0.00 0.00 3.56
140 141 0.541392 ATCACATACGAGCTGGGCAA 59.459 50.000 0.00 0.00 0.00 4.52
141 142 1.408969 TATCACATACGAGCTGGGCA 58.591 50.000 0.00 0.00 0.00 5.36
142 143 2.526304 TTATCACATACGAGCTGGGC 57.474 50.000 0.00 0.00 0.00 5.36
143 144 4.257267 TCATTATCACATACGAGCTGGG 57.743 45.455 0.00 0.00 0.00 4.45
144 145 6.791887 AATTCATTATCACATACGAGCTGG 57.208 37.500 0.00 0.00 0.00 4.85
145 146 9.750882 CATTAATTCATTATCACATACGAGCTG 57.249 33.333 0.00 0.00 0.00 4.24
146 147 9.710900 TCATTAATTCATTATCACATACGAGCT 57.289 29.630 0.00 0.00 0.00 4.09
154 155 9.738832 CAAGTGCATCATTAATTCATTATCACA 57.261 29.630 0.00 0.00 0.00 3.58
155 156 9.740239 ACAAGTGCATCATTAATTCATTATCAC 57.260 29.630 0.00 0.00 0.00 3.06
156 157 9.955208 GACAAGTGCATCATTAATTCATTATCA 57.045 29.630 0.00 0.00 0.00 2.15
157 158 9.110617 CGACAAGTGCATCATTAATTCATTATC 57.889 33.333 0.00 0.00 0.00 1.75
158 159 8.839343 TCGACAAGTGCATCATTAATTCATTAT 58.161 29.630 0.00 0.00 0.00 1.28
159 160 8.207521 TCGACAAGTGCATCATTAATTCATTA 57.792 30.769 0.00 0.00 0.00 1.90
160 161 7.087409 TCGACAAGTGCATCATTAATTCATT 57.913 32.000 0.00 0.00 0.00 2.57
161 162 6.682423 TCGACAAGTGCATCATTAATTCAT 57.318 33.333 0.00 0.00 0.00 2.57
162 163 6.488817 CATCGACAAGTGCATCATTAATTCA 58.511 36.000 0.00 0.00 0.00 2.57
163 164 5.397534 GCATCGACAAGTGCATCATTAATTC 59.602 40.000 3.89 0.00 40.94 2.17
164 165 5.163632 TGCATCGACAAGTGCATCATTAATT 60.164 36.000 7.31 0.00 45.60 1.40
165 166 4.336153 TGCATCGACAAGTGCATCATTAAT 59.664 37.500 7.31 0.00 45.60 1.40
166 167 3.688673 TGCATCGACAAGTGCATCATTAA 59.311 39.130 7.31 0.00 45.60 1.40
167 168 3.269178 TGCATCGACAAGTGCATCATTA 58.731 40.909 7.31 0.00 45.60 1.90
168 169 2.086094 TGCATCGACAAGTGCATCATT 58.914 42.857 7.31 0.00 45.60 2.57
169 170 1.741528 TGCATCGACAAGTGCATCAT 58.258 45.000 7.31 0.00 45.60 2.45
170 171 3.230115 TGCATCGACAAGTGCATCA 57.770 47.368 7.31 0.00 45.60 3.07
174 175 1.127582 GAAGACTGCATCGACAAGTGC 59.872 52.381 1.74 1.74 41.61 4.40
175 176 1.388093 CGAAGACTGCATCGACAAGTG 59.612 52.381 1.16 0.00 41.43 3.16
176 177 1.269723 TCGAAGACTGCATCGACAAGT 59.730 47.619 6.05 0.00 42.61 3.16
177 178 1.982612 TCGAAGACTGCATCGACAAG 58.017 50.000 6.05 0.00 42.61 3.16
190 191 5.690997 ATATATCAGCGTTCAGTCGAAGA 57.309 39.130 0.00 0.00 0.00 2.87
191 192 5.387855 GCAATATATCAGCGTTCAGTCGAAG 60.388 44.000 0.00 0.00 0.00 3.79
192 193 4.444388 GCAATATATCAGCGTTCAGTCGAA 59.556 41.667 0.00 0.00 0.00 3.71
193 194 3.981416 GCAATATATCAGCGTTCAGTCGA 59.019 43.478 0.00 0.00 0.00 4.20
194 195 3.735746 TGCAATATATCAGCGTTCAGTCG 59.264 43.478 5.85 0.00 0.00 4.18
195 196 4.151335 CCTGCAATATATCAGCGTTCAGTC 59.849 45.833 0.00 0.00 0.00 3.51
196 197 4.060900 CCTGCAATATATCAGCGTTCAGT 58.939 43.478 0.00 0.00 0.00 3.41
197 198 4.060900 ACCTGCAATATATCAGCGTTCAG 58.939 43.478 0.00 0.00 0.00 3.02
198 199 3.809279 CACCTGCAATATATCAGCGTTCA 59.191 43.478 0.00 0.00 0.00 3.18
199 200 3.809832 ACACCTGCAATATATCAGCGTTC 59.190 43.478 0.00 0.00 0.00 3.95
200 201 3.808728 ACACCTGCAATATATCAGCGTT 58.191 40.909 0.00 0.00 0.00 4.84
201 202 3.181466 TGACACCTGCAATATATCAGCGT 60.181 43.478 0.00 1.79 0.00 5.07
202 203 3.392882 TGACACCTGCAATATATCAGCG 58.607 45.455 0.00 0.00 0.00 5.18
203 204 5.471116 TGATTGACACCTGCAATATATCAGC 59.529 40.000 3.77 3.77 36.19 4.26
204 205 7.500720 TTGATTGACACCTGCAATATATCAG 57.499 36.000 0.00 0.00 36.19 2.90
205 206 7.878547 TTTGATTGACACCTGCAATATATCA 57.121 32.000 0.00 0.00 36.19 2.15
206 207 9.188588 CATTTTGATTGACACCTGCAATATATC 57.811 33.333 0.00 0.00 36.19 1.63
207 208 8.698210 ACATTTTGATTGACACCTGCAATATAT 58.302 29.630 0.00 0.00 36.19 0.86
208 209 8.065473 ACATTTTGATTGACACCTGCAATATA 57.935 30.769 0.00 0.00 36.19 0.86
209 210 6.938507 ACATTTTGATTGACACCTGCAATAT 58.061 32.000 0.00 0.00 36.19 1.28
210 211 6.343716 ACATTTTGATTGACACCTGCAATA 57.656 33.333 0.00 0.00 36.19 1.90
211 212 5.217978 ACATTTTGATTGACACCTGCAAT 57.782 34.783 0.00 0.00 38.58 3.56
212 213 4.669206 ACATTTTGATTGACACCTGCAA 57.331 36.364 0.00 0.00 0.00 4.08
213 214 4.669206 AACATTTTGATTGACACCTGCA 57.331 36.364 0.00 0.00 0.00 4.41
214 215 6.922957 TCTTTAACATTTTGATTGACACCTGC 59.077 34.615 0.00 0.00 0.00 4.85
215 216 8.870160 TTCTTTAACATTTTGATTGACACCTG 57.130 30.769 0.00 0.00 0.00 4.00
221 222 9.134734 GCCGTAATTCTTTAACATTTTGATTGA 57.865 29.630 0.00 0.00 0.00 2.57
222 223 8.101510 CGCCGTAATTCTTTAACATTTTGATTG 58.898 33.333 0.00 0.00 0.00 2.67
223 224 7.274686 CCGCCGTAATTCTTTAACATTTTGATT 59.725 33.333 0.00 0.00 0.00 2.57
224 225 6.750039 CCGCCGTAATTCTTTAACATTTTGAT 59.250 34.615 0.00 0.00 0.00 2.57
225 226 6.087522 CCGCCGTAATTCTTTAACATTTTGA 58.912 36.000 0.00 0.00 0.00 2.69
226 227 5.220135 GCCGCCGTAATTCTTTAACATTTTG 60.220 40.000 0.00 0.00 0.00 2.44
227 228 4.860352 GCCGCCGTAATTCTTTAACATTTT 59.140 37.500 0.00 0.00 0.00 1.82
228 229 4.157105 AGCCGCCGTAATTCTTTAACATTT 59.843 37.500 0.00 0.00 0.00 2.32
229 230 3.692593 AGCCGCCGTAATTCTTTAACATT 59.307 39.130 0.00 0.00 0.00 2.71
230 231 3.275999 AGCCGCCGTAATTCTTTAACAT 58.724 40.909 0.00 0.00 0.00 2.71
231 232 2.674357 GAGCCGCCGTAATTCTTTAACA 59.326 45.455 0.00 0.00 0.00 2.41
232 233 2.285428 CGAGCCGCCGTAATTCTTTAAC 60.285 50.000 0.00 0.00 0.00 2.01
233 234 1.928503 CGAGCCGCCGTAATTCTTTAA 59.071 47.619 0.00 0.00 0.00 1.52
234 235 1.135024 ACGAGCCGCCGTAATTCTTTA 60.135 47.619 5.27 0.00 41.44 1.85
235 236 0.390735 ACGAGCCGCCGTAATTCTTT 60.391 50.000 5.27 0.00 41.44 2.52
236 237 0.390735 AACGAGCCGCCGTAATTCTT 60.391 50.000 7.22 0.00 42.54 2.52
237 238 0.390735 AAACGAGCCGCCGTAATTCT 60.391 50.000 7.22 0.00 42.54 2.40
238 239 0.445043 AAAACGAGCCGCCGTAATTC 59.555 50.000 7.22 0.00 42.54 2.17
239 240 0.167251 CAAAACGAGCCGCCGTAATT 59.833 50.000 7.22 4.24 42.54 1.40
240 241 0.952010 ACAAAACGAGCCGCCGTAAT 60.952 50.000 7.22 0.00 42.54 1.89
241 242 1.559149 GACAAAACGAGCCGCCGTAA 61.559 55.000 7.22 0.00 42.54 3.18
242 243 2.023223 GACAAAACGAGCCGCCGTA 61.023 57.895 7.22 0.00 42.54 4.02
243 244 3.343421 GACAAAACGAGCCGCCGT 61.343 61.111 0.00 1.62 45.64 5.68
244 245 2.887889 TTGACAAAACGAGCCGCCG 61.888 57.895 0.00 0.44 0.00 6.46
245 246 1.370051 GTTGACAAAACGAGCCGCC 60.370 57.895 0.00 0.00 0.00 6.13
246 247 1.721133 CGTTGACAAAACGAGCCGC 60.721 57.895 4.69 0.00 45.64 6.53
247 248 1.083015 CCGTTGACAAAACGAGCCG 60.083 57.895 11.87 0.00 45.64 5.52
248 249 0.316689 CACCGTTGACAAAACGAGCC 60.317 55.000 11.87 0.00 45.64 4.70
249 250 0.375803 ACACCGTTGACAAAACGAGC 59.624 50.000 11.87 0.00 45.64 5.03
250 251 1.661617 TCACACCGTTGACAAAACGAG 59.338 47.619 11.87 6.80 45.64 4.18
251 252 1.723220 TCACACCGTTGACAAAACGA 58.277 45.000 11.87 0.00 45.64 3.85
252 253 2.635444 GATCACACCGTTGACAAAACG 58.365 47.619 3.72 3.72 42.74 3.60
253 254 2.031191 ACGATCACACCGTTGACAAAAC 59.969 45.455 0.00 0.00 36.83 2.43
254 255 2.281517 ACGATCACACCGTTGACAAAA 58.718 42.857 0.00 0.00 36.83 2.44
255 256 1.862201 GACGATCACACCGTTGACAAA 59.138 47.619 0.00 0.00 40.67 2.83
256 257 1.067974 AGACGATCACACCGTTGACAA 59.932 47.619 0.00 0.00 40.67 3.18
257 258 0.671796 AGACGATCACACCGTTGACA 59.328 50.000 0.00 0.00 40.67 3.58
258 259 1.060713 CAGACGATCACACCGTTGAC 58.939 55.000 0.00 0.00 40.67 3.18
259 260 0.038618 CCAGACGATCACACCGTTGA 60.039 55.000 0.00 0.00 40.67 3.18
260 261 0.319555 ACCAGACGATCACACCGTTG 60.320 55.000 0.00 0.00 40.67 4.10
261 262 0.319555 CACCAGACGATCACACCGTT 60.320 55.000 0.00 0.00 40.67 4.44
262 263 1.289066 CACCAGACGATCACACCGT 59.711 57.895 0.00 0.00 43.56 4.83
263 264 1.446099 CCACCAGACGATCACACCG 60.446 63.158 0.00 0.00 0.00 4.94
264 265 0.389948 GACCACCAGACGATCACACC 60.390 60.000 0.00 0.00 0.00 4.16
265 266 0.603569 AGACCACCAGACGATCACAC 59.396 55.000 0.00 0.00 0.00 3.82
266 267 2.092323 CTAGACCACCAGACGATCACA 58.908 52.381 0.00 0.00 0.00 3.58
267 268 1.405821 CCTAGACCACCAGACGATCAC 59.594 57.143 0.00 0.00 0.00 3.06
268 269 1.283905 TCCTAGACCACCAGACGATCA 59.716 52.381 0.00 0.00 0.00 2.92
269 270 2.054232 TCCTAGACCACCAGACGATC 57.946 55.000 0.00 0.00 0.00 3.69
270 271 2.100989 GTTCCTAGACCACCAGACGAT 58.899 52.381 0.00 0.00 0.00 3.73
271 272 1.542492 GTTCCTAGACCACCAGACGA 58.458 55.000 0.00 0.00 0.00 4.20
272 273 0.531200 GGTTCCTAGACCACCAGACG 59.469 60.000 0.00 0.00 39.57 4.18
273 274 1.939980 AGGTTCCTAGACCACCAGAC 58.060 55.000 3.61 0.00 42.35 3.51
274 275 2.158219 TCAAGGTTCCTAGACCACCAGA 60.158 50.000 3.61 1.23 42.35 3.86
275 276 2.028020 GTCAAGGTTCCTAGACCACCAG 60.028 54.545 3.61 0.00 42.35 4.00
276 277 1.975680 GTCAAGGTTCCTAGACCACCA 59.024 52.381 3.61 0.00 42.35 4.17
277 278 1.067071 CGTCAAGGTTCCTAGACCACC 60.067 57.143 3.61 0.79 42.35 4.61
278 279 1.617357 ACGTCAAGGTTCCTAGACCAC 59.383 52.381 3.61 0.00 42.35 4.16
279 280 2.005370 ACGTCAAGGTTCCTAGACCA 57.995 50.000 3.61 0.00 42.35 4.02
280 281 4.732672 ATTACGTCAAGGTTCCTAGACC 57.267 45.455 0.00 0.00 40.11 3.85
281 282 8.538409 TTAAAATTACGTCAAGGTTCCTAGAC 57.462 34.615 0.00 0.00 0.00 2.59
282 283 9.729281 AATTAAAATTACGTCAAGGTTCCTAGA 57.271 29.630 0.00 0.00 0.00 2.43
309 310 9.485206 ACCGAAAGTATAAAGCATCGTTAATAT 57.515 29.630 0.00 0.00 0.00 1.28
310 311 8.757789 CACCGAAAGTATAAAGCATCGTTAATA 58.242 33.333 0.00 0.00 0.00 0.98
311 312 7.493320 TCACCGAAAGTATAAAGCATCGTTAAT 59.507 33.333 0.00 0.00 0.00 1.40
312 313 6.812656 TCACCGAAAGTATAAAGCATCGTTAA 59.187 34.615 0.00 0.00 0.00 2.01
313 314 6.331845 TCACCGAAAGTATAAAGCATCGTTA 58.668 36.000 0.00 0.00 0.00 3.18
314 315 5.172934 TCACCGAAAGTATAAAGCATCGTT 58.827 37.500 0.00 0.00 0.00 3.85
315 316 4.751060 TCACCGAAAGTATAAAGCATCGT 58.249 39.130 0.00 0.00 0.00 3.73
316 317 5.291128 AGTTCACCGAAAGTATAAAGCATCG 59.709 40.000 0.00 0.00 0.00 3.84
317 318 6.663944 AGTTCACCGAAAGTATAAAGCATC 57.336 37.500 0.00 0.00 0.00 3.91
318 319 7.448748 AAAGTTCACCGAAAGTATAAAGCAT 57.551 32.000 0.00 0.00 0.00 3.79
319 320 6.870971 AAAGTTCACCGAAAGTATAAAGCA 57.129 33.333 0.00 0.00 0.00 3.91
369 370 7.231519 ACGGGAAAAGATGAGATTTCTCTTTTT 59.768 33.333 16.88 11.44 44.82 1.94
370 371 6.717084 ACGGGAAAAGATGAGATTTCTCTTTT 59.283 34.615 16.28 16.28 46.47 2.27
371 372 6.150140 CACGGGAAAAGATGAGATTTCTCTTT 59.850 38.462 8.91 1.53 43.25 2.52
372 373 5.645497 CACGGGAAAAGATGAGATTTCTCTT 59.355 40.000 8.91 2.68 43.25 2.85
373 374 5.046304 TCACGGGAAAAGATGAGATTTCTCT 60.046 40.000 8.91 0.00 43.25 3.10
374 375 5.178797 TCACGGGAAAAGATGAGATTTCTC 58.821 41.667 0.46 0.46 43.15 2.87
375 376 5.165961 TCACGGGAAAAGATGAGATTTCT 57.834 39.130 0.00 0.00 36.15 2.52
376 377 5.181245 TGTTCACGGGAAAAGATGAGATTTC 59.819 40.000 0.00 0.00 34.13 2.17
377 378 5.070001 TGTTCACGGGAAAAGATGAGATTT 58.930 37.500 0.00 0.00 34.13 2.17
378 379 4.651778 TGTTCACGGGAAAAGATGAGATT 58.348 39.130 0.00 0.00 34.13 2.40
379 380 4.020218 TCTGTTCACGGGAAAAGATGAGAT 60.020 41.667 16.57 0.00 41.45 2.75
380 381 3.323691 TCTGTTCACGGGAAAAGATGAGA 59.676 43.478 16.57 1.77 41.45 3.27
381 382 3.664107 TCTGTTCACGGGAAAAGATGAG 58.336 45.455 16.57 0.00 41.45 2.90
382 383 3.762407 TCTGTTCACGGGAAAAGATGA 57.238 42.857 16.57 0.00 41.45 2.92
383 384 4.515191 TCTTTCTGTTCACGGGAAAAGATG 59.485 41.667 20.87 15.94 44.79 2.90
384 385 4.714632 TCTTTCTGTTCACGGGAAAAGAT 58.285 39.130 20.87 0.00 44.79 2.40
385 386 4.145365 TCTTTCTGTTCACGGGAAAAGA 57.855 40.909 16.57 16.57 43.98 2.52
386 387 6.426937 TCTTATCTTTCTGTTCACGGGAAAAG 59.573 38.462 11.66 11.66 39.36 2.27
387 388 6.204108 GTCTTATCTTTCTGTTCACGGGAAAA 59.796 38.462 0.00 0.00 34.13 2.29
388 389 5.699458 GTCTTATCTTTCTGTTCACGGGAAA 59.301 40.000 0.00 0.00 34.13 3.13
389 390 5.221561 TGTCTTATCTTTCTGTTCACGGGAA 60.222 40.000 0.00 0.00 0.00 3.97
390 391 4.282449 TGTCTTATCTTTCTGTTCACGGGA 59.718 41.667 0.00 0.00 0.00 5.14
391 392 4.566004 TGTCTTATCTTTCTGTTCACGGG 58.434 43.478 0.00 0.00 0.00 5.28
392 393 6.368791 TGAATGTCTTATCTTTCTGTTCACGG 59.631 38.462 0.00 0.00 0.00 4.94
393 394 7.116948 ACTGAATGTCTTATCTTTCTGTTCACG 59.883 37.037 0.00 0.00 33.50 4.35
394 395 8.316640 ACTGAATGTCTTATCTTTCTGTTCAC 57.683 34.615 0.00 0.00 33.50 3.18
395 396 8.150296 TGACTGAATGTCTTATCTTTCTGTTCA 58.850 33.333 0.00 0.00 45.54 3.18
396 397 8.439286 GTGACTGAATGTCTTATCTTTCTGTTC 58.561 37.037 0.00 0.00 45.54 3.18
397 398 7.116948 CGTGACTGAATGTCTTATCTTTCTGTT 59.883 37.037 0.00 0.00 45.54 3.16
398 399 6.587990 CGTGACTGAATGTCTTATCTTTCTGT 59.412 38.462 0.00 0.00 45.54 3.41
399 400 6.454848 GCGTGACTGAATGTCTTATCTTTCTG 60.455 42.308 0.00 0.00 45.54 3.02
400 401 5.578727 GCGTGACTGAATGTCTTATCTTTCT 59.421 40.000 0.00 0.00 45.54 2.52
401 402 5.578727 AGCGTGACTGAATGTCTTATCTTTC 59.421 40.000 0.00 0.00 45.54 2.62
402 403 5.482908 AGCGTGACTGAATGTCTTATCTTT 58.517 37.500 0.00 0.00 45.54 2.52
403 404 5.078411 AGCGTGACTGAATGTCTTATCTT 57.922 39.130 0.00 0.00 45.54 2.40
404 405 4.727507 AGCGTGACTGAATGTCTTATCT 57.272 40.909 0.00 0.00 45.54 1.98
428 429 2.252072 TTATGTCCTGCGGTCCTGCC 62.252 60.000 3.72 0.00 0.00 4.85
429 430 1.090052 GTTATGTCCTGCGGTCCTGC 61.090 60.000 0.00 0.00 0.00 4.85
430 431 0.537188 AGTTATGTCCTGCGGTCCTG 59.463 55.000 0.00 0.00 0.00 3.86
431 432 0.537188 CAGTTATGTCCTGCGGTCCT 59.463 55.000 0.00 0.00 0.00 3.85
432 433 0.535335 TCAGTTATGTCCTGCGGTCC 59.465 55.000 0.00 0.00 0.00 4.46
433 434 1.067142 TGTCAGTTATGTCCTGCGGTC 60.067 52.381 0.00 0.00 0.00 4.79
434 435 0.973632 TGTCAGTTATGTCCTGCGGT 59.026 50.000 0.00 0.00 0.00 5.68
435 436 2.093306 TTGTCAGTTATGTCCTGCGG 57.907 50.000 0.00 0.00 0.00 5.69
436 437 2.352651 CCATTGTCAGTTATGTCCTGCG 59.647 50.000 0.00 0.00 0.00 5.18
437 438 3.347216 ACCATTGTCAGTTATGTCCTGC 58.653 45.455 0.00 0.00 0.00 4.85
438 439 4.156556 CCAACCATTGTCAGTTATGTCCTG 59.843 45.833 0.00 0.00 0.00 3.86
439 440 4.202567 ACCAACCATTGTCAGTTATGTCCT 60.203 41.667 0.00 0.00 0.00 3.85
440 441 4.079253 ACCAACCATTGTCAGTTATGTCC 58.921 43.478 0.00 0.00 0.00 4.02
441 442 5.705609 AACCAACCATTGTCAGTTATGTC 57.294 39.130 0.00 0.00 0.00 3.06
442 443 6.323739 AGAAAACCAACCATTGTCAGTTATGT 59.676 34.615 0.00 0.00 0.00 2.29
443 444 6.748132 AGAAAACCAACCATTGTCAGTTATG 58.252 36.000 0.00 0.00 0.00 1.90
444 445 6.293955 CGAGAAAACCAACCATTGTCAGTTAT 60.294 38.462 0.00 0.00 0.00 1.89
445 446 5.008217 CGAGAAAACCAACCATTGTCAGTTA 59.992 40.000 0.00 0.00 0.00 2.24
446 447 4.202010 CGAGAAAACCAACCATTGTCAGTT 60.202 41.667 0.00 0.00 0.00 3.16
447 448 3.315191 CGAGAAAACCAACCATTGTCAGT 59.685 43.478 0.00 0.00 0.00 3.41
448 449 3.315191 ACGAGAAAACCAACCATTGTCAG 59.685 43.478 0.00 0.00 0.00 3.51
449 450 3.066064 CACGAGAAAACCAACCATTGTCA 59.934 43.478 0.00 0.00 0.00 3.58
450 451 3.066203 ACACGAGAAAACCAACCATTGTC 59.934 43.478 0.00 0.00 0.00 3.18
451 452 3.020984 ACACGAGAAAACCAACCATTGT 58.979 40.909 0.00 0.00 0.00 2.71
452 453 3.066064 TCACACGAGAAAACCAACCATTG 59.934 43.478 0.00 0.00 0.00 2.82
453 454 3.283751 TCACACGAGAAAACCAACCATT 58.716 40.909 0.00 0.00 0.00 3.16
474 475 5.105392 TCAGTGGTTGAAGCAACAAAGAAAT 60.105 36.000 11.83 0.00 45.11 2.17
480 481 1.748493 GGTCAGTGGTTGAAGCAACAA 59.252 47.619 11.83 0.00 45.11 2.83
511 512 3.910490 GTTTGCAGGCGGCCACAA 61.910 61.111 23.09 21.12 43.89 3.33
513 514 4.645921 GTGTTTGCAGGCGGCCAC 62.646 66.667 23.09 13.50 43.89 5.01
584 597 1.863624 GCGCTCGAAGGAAGATGAGAG 60.864 57.143 0.00 0.00 0.00 3.20
585 598 0.101399 GCGCTCGAAGGAAGATGAGA 59.899 55.000 0.00 0.00 0.00 3.27
586 599 0.873743 GGCGCTCGAAGGAAGATGAG 60.874 60.000 7.64 0.00 0.00 2.90
587 600 1.141881 GGCGCTCGAAGGAAGATGA 59.858 57.895 7.64 0.00 0.00 2.92
711 737 3.411517 AATGCTGGAGACCGGGGG 61.412 66.667 6.32 0.00 0.00 5.40
733 759 0.698238 CCATGGGGGTTCTCTTGTCA 59.302 55.000 2.85 0.00 0.00 3.58
736 762 1.380380 GGCCATGGGGGTTCTCTTG 60.380 63.158 15.13 0.00 39.65 3.02
760 788 1.440618 TGCAGTTTCCACTCCCCTAA 58.559 50.000 0.00 0.00 0.00 2.69
801 830 4.318332 TCGAACATTCAGCACAGAAATCT 58.682 39.130 0.00 0.00 0.00 2.40
854 885 8.827832 AAATCTGTAATCAAATTCAGATGGGA 57.172 30.769 5.99 0.00 43.80 4.37
975 1070 0.247814 CAGATTGCGAATGTCGGTGC 60.248 55.000 0.00 0.00 40.84 5.01
1058 1182 3.820557 TCCTTGAGTTTGTTTAGCAGCT 58.179 40.909 0.00 0.00 0.00 4.24
1062 1186 6.404074 CCAGATGATCCTTGAGTTTGTTTAGC 60.404 42.308 0.00 0.00 0.00 3.09
1063 1187 6.881065 TCCAGATGATCCTTGAGTTTGTTTAG 59.119 38.462 0.00 0.00 0.00 1.85
1064 1188 6.655003 GTCCAGATGATCCTTGAGTTTGTTTA 59.345 38.462 0.00 0.00 0.00 2.01
1149 1273 2.171725 GCACGCTGATACCGGAACC 61.172 63.158 9.46 0.00 0.00 3.62
1254 1378 0.179111 CTTCTCGAGCCATGCGGTTA 60.179 55.000 7.81 0.00 33.28 2.85
1288 1418 1.883926 GTAGGTGAAAATGTTGGGCGT 59.116 47.619 0.00 0.00 0.00 5.68
1301 1431 6.573434 CAGTCAATTAGTATGCTGTAGGTGA 58.427 40.000 0.00 0.00 0.00 4.02
1350 1480 3.345607 AAAGAAGGCGGGCCCTAGC 62.346 63.158 22.43 17.30 45.62 3.42
1390 1520 0.638746 GTAACGACGTTCGCCATGAG 59.361 55.000 17.94 0.00 45.12 2.90
1394 1524 0.664166 GAAGGTAACGACGTTCGCCA 60.664 55.000 25.88 6.87 45.12 5.69
1415 1545 1.211457 AGAGGCACTTGAATAGGCTGG 59.789 52.381 0.00 0.00 41.55 4.85
1542 1672 3.569361 AAGCTGGCTCCTCCCCTCA 62.569 63.158 0.00 0.00 0.00 3.86
1791 1926 4.202673 ACCCCACTATCAACCATTTGTCTT 60.203 41.667 0.00 0.00 34.02 3.01
1792 1927 3.333680 ACCCCACTATCAACCATTTGTCT 59.666 43.478 0.00 0.00 34.02 3.41
1899 2034 3.250762 TGACGCCTTGACTTCTCATTTTG 59.749 43.478 0.00 0.00 0.00 2.44
2060 2195 3.455327 GATCCTTCTTTAGCGTACCCAC 58.545 50.000 0.00 0.00 0.00 4.61
2184 2319 6.489361 AGAAAAGAATAGCCACATCCATCATC 59.511 38.462 0.00 0.00 0.00 2.92
2313 2902 5.071653 TCCCATACCGATCATCTCATTGAAA 59.928 40.000 0.00 0.00 0.00 2.69
2411 4155 7.122650 TGGTCTTCATTTCAGTAATCAATTCCC 59.877 37.037 0.00 0.00 0.00 3.97
2545 4458 9.143631 CAGTAATCAATTCTTTGGCTTTTAAGG 57.856 33.333 0.00 0.00 33.44 2.69
2546 4459 9.912634 TCAGTAATCAATTCTTTGGCTTTTAAG 57.087 29.630 0.00 0.00 33.44 1.85
2549 4462 9.783081 ATTTCAGTAATCAATTCTTTGGCTTTT 57.217 25.926 0.00 0.00 33.44 2.27
2550 4463 9.211485 CATTTCAGTAATCAATTCTTTGGCTTT 57.789 29.630 0.00 0.00 33.44 3.51
2551 4464 8.587608 TCATTTCAGTAATCAATTCTTTGGCTT 58.412 29.630 0.00 0.00 33.44 4.35
2552 4465 8.125978 TCATTTCAGTAATCAATTCTTTGGCT 57.874 30.769 0.00 0.00 33.44 4.75
2553 4466 8.761575 TTCATTTCAGTAATCAATTCTTTGGC 57.238 30.769 0.00 0.00 33.44 4.52
2589 4512 2.012673 CTTCTGCAGCCTATGACCAAC 58.987 52.381 9.47 0.00 0.00 3.77
2853 4781 5.375417 TGATGCCAGAAACATAAGTTGTG 57.625 39.130 0.00 0.00 38.99 3.33
3053 5003 9.030301 CCGTCTCAAAATAAGTGTTTTTGATTT 57.970 29.630 10.86 0.00 46.36 2.17
3057 5007 6.636850 CCTCCGTCTCAAAATAAGTGTTTTTG 59.363 38.462 3.17 3.17 42.63 2.44
3058 5008 6.238925 CCCTCCGTCTCAAAATAAGTGTTTTT 60.239 38.462 0.00 0.00 0.00 1.94
3061 5011 4.041198 TCCCTCCGTCTCAAAATAAGTGTT 59.959 41.667 0.00 0.00 0.00 3.32
3063 5013 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3065 5015 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
3066 5016 6.363167 TTTACTCCCTCCGTCTCAAAATAA 57.637 37.500 0.00 0.00 0.00 1.40
3067 5017 6.070424 ACATTTACTCCCTCCGTCTCAAAATA 60.070 38.462 0.00 0.00 0.00 1.40
3068 5018 4.903045 TTTACTCCCTCCGTCTCAAAAT 57.097 40.909 0.00 0.00 0.00 1.82
3069 5019 4.041198 ACATTTACTCCCTCCGTCTCAAAA 59.959 41.667 0.00 0.00 0.00 2.44
3070 5020 3.581332 ACATTTACTCCCTCCGTCTCAAA 59.419 43.478 0.00 0.00 0.00 2.69
3071 5021 3.170717 ACATTTACTCCCTCCGTCTCAA 58.829 45.455 0.00 0.00 0.00 3.02
3072 5022 2.816411 ACATTTACTCCCTCCGTCTCA 58.184 47.619 0.00 0.00 0.00 3.27
3073 5023 4.996788 TTACATTTACTCCCTCCGTCTC 57.003 45.455 0.00 0.00 0.00 3.36
3074 5024 5.424252 TGATTTACATTTACTCCCTCCGTCT 59.576 40.000 0.00 0.00 0.00 4.18
3075 5025 5.667466 TGATTTACATTTACTCCCTCCGTC 58.333 41.667 0.00 0.00 0.00 4.79
3076 5026 5.424252 TCTGATTTACATTTACTCCCTCCGT 59.576 40.000 0.00 0.00 0.00 4.69
3077 5027 5.914033 TCTGATTTACATTTACTCCCTCCG 58.086 41.667 0.00 0.00 0.00 4.63
3078 5028 7.229506 CCAATCTGATTTACATTTACTCCCTCC 59.770 40.741 0.00 0.00 0.00 4.30
3079 5029 7.775561 ACCAATCTGATTTACATTTACTCCCTC 59.224 37.037 0.00 0.00 0.00 4.30
3080 5030 7.643123 ACCAATCTGATTTACATTTACTCCCT 58.357 34.615 0.00 0.00 0.00 4.20
3081 5031 7.881775 ACCAATCTGATTTACATTTACTCCC 57.118 36.000 0.00 0.00 0.00 4.30
3082 5032 9.614792 AGTACCAATCTGATTTACATTTACTCC 57.385 33.333 12.38 0.00 0.00 3.85
3087 5037 9.520515 ACTGAAGTACCAATCTGATTTACATTT 57.479 29.630 12.38 2.49 0.00 2.32
3088 5038 9.520515 AACTGAAGTACCAATCTGATTTACATT 57.479 29.630 12.38 6.11 0.00 2.71
3089 5039 9.520515 AAACTGAAGTACCAATCTGATTTACAT 57.479 29.630 12.38 3.41 0.00 2.29
3090 5040 8.918202 AAACTGAAGTACCAATCTGATTTACA 57.082 30.769 12.38 2.05 0.00 2.41
3095 5045 9.574516 AAAACTAAACTGAAGTACCAATCTGAT 57.425 29.630 0.00 0.00 0.00 2.90
3129 5079 0.109827 TTTGATGCCGACATGCAACG 60.110 50.000 0.00 0.00 45.84 4.10
3164 5114 5.865085 TCAGGCAACACTCTAGTAATTTGT 58.135 37.500 0.00 0.00 41.41 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.