Multiple sequence alignment - TraesCS6B01G129100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G129100 chr6B 100.000 2974 0 0 1 2974 125334981 125337954 0.000000e+00 5493.0
1 TraesCS6B01G129100 chr6B 89.986 1458 142 4 1272 2728 125379613 125381067 0.000000e+00 1881.0
2 TraesCS6B01G129100 chr6B 85.070 1708 238 13 1272 2970 125404967 125406666 0.000000e+00 1725.0
3 TraesCS6B01G129100 chr6B 83.007 153 23 3 2554 2704 122965669 122965820 5.170000e-28 135.0
4 TraesCS6B01G129100 chr6B 91.429 70 6 0 692 761 125370260 125370329 2.440000e-16 97.1
5 TraesCS6B01G129100 chr6B 86.301 73 6 2 692 761 125361051 125361122 3.180000e-10 76.8
6 TraesCS6B01G129100 chr6D 93.715 1973 114 7 759 2728 55104393 55106358 0.000000e+00 2948.0
7 TraesCS6B01G129100 chr6D 90.340 1708 140 14 1272 2974 55629090 55630777 0.000000e+00 2217.0
8 TraesCS6B01G129100 chr6D 81.913 2311 320 57 692 2970 55403256 55405500 0.000000e+00 1862.0
9 TraesCS6B01G129100 chr6D 95.000 280 10 3 759 1035 55628598 55628876 1.270000e-118 436.0
10 TraesCS6B01G129100 chr6D 86.035 401 43 6 2576 2974 55315180 55315569 4.580000e-113 418.0
11 TraesCS6B01G129100 chr6D 94.286 70 4 0 692 761 55628572 55628641 1.130000e-19 108.0
12 TraesCS6B01G129100 chr6D 92.857 70 5 0 692 761 55104367 55104436 5.240000e-18 102.0
13 TraesCS6B01G129100 chr6A 86.472 1715 193 27 1272 2974 69132590 69134277 0.000000e+00 1845.0
14 TraesCS6B01G129100 chr6A 81.094 1444 256 15 1272 2706 67055451 67054016 0.000000e+00 1138.0
15 TraesCS6B01G129100 chr6A 80.335 1434 275 6 1272 2702 66373476 66374905 0.000000e+00 1079.0
16 TraesCS6B01G129100 chr6A 82.084 547 73 11 61 604 516418778 516418254 7.560000e-121 444.0
17 TraesCS6B01G129100 chr6A 84.254 362 47 7 809 1163 69132159 69132517 7.890000e-91 344.0
18 TraesCS6B01G129100 chr7D 80.527 1443 262 14 1272 2706 192447563 192448994 0.000000e+00 1090.0
19 TraesCS6B01G129100 chr7D 82.383 193 27 4 477 663 170284026 170283835 8.530000e-36 161.0
20 TraesCS6B01G129100 chr7D 87.879 66 7 1 1 65 475055345 475055410 3.180000e-10 76.8
21 TraesCS6B01G129100 chr2A 82.102 609 90 9 61 663 644877838 644878433 1.230000e-138 503.0
22 TraesCS6B01G129100 chr2A 79.762 252 43 6 419 663 776482782 776483032 3.050000e-40 176.0
23 TraesCS6B01G129100 chr2A 91.803 61 4 1 1 60 549259938 549259998 1.900000e-12 84.2
24 TraesCS6B01G129100 chr7B 81.188 606 90 10 64 660 6126687 6127277 1.610000e-127 466.0
25 TraesCS6B01G129100 chr7B 77.759 598 100 18 67 663 202350968 202351533 1.320000e-88 337.0
26 TraesCS6B01G129100 chr7B 91.803 61 4 1 1 60 109524819 109524759 1.900000e-12 84.2
27 TraesCS6B01G129100 chr2B 80.789 583 91 9 89 663 769107074 769107643 1.270000e-118 436.0
28 TraesCS6B01G129100 chr2B 81.568 472 76 8 129 599 634205623 634205162 2.160000e-101 379.0
29 TraesCS6B01G129100 chr2B 78.136 558 103 11 67 617 719958509 719957964 1.320000e-88 337.0
30 TraesCS6B01G129100 chr2B 89.062 64 6 1 1 63 517629175 517629112 8.840000e-11 78.7
31 TraesCS6B01G129100 chr5D 80.663 543 91 9 64 602 525740929 525740397 2.760000e-110 409.0
32 TraesCS6B01G129100 chr5D 86.022 186 20 2 484 663 58518142 58518327 8.410000e-46 195.0
33 TraesCS6B01G129100 chr2D 87.463 335 39 2 67 399 644675370 644675037 1.670000e-102 383.0
34 TraesCS6B01G129100 chr2D 76.786 616 124 15 61 662 453763528 453762918 7.950000e-86 327.0
35 TraesCS6B01G129100 chr2D 90.625 64 5 1 1 63 439621259 439621196 1.900000e-12 84.2
36 TraesCS6B01G129100 chr1A 83.871 186 24 4 484 663 301144435 301144250 3.940000e-39 172.0
37 TraesCS6B01G129100 chr3D 93.220 59 3 1 1 58 252312771 252312713 5.280000e-13 86.1
38 TraesCS6B01G129100 chr3D 91.525 59 4 1 1 58 59329336 59329394 2.460000e-11 80.5
39 TraesCS6B01G129100 chr5B 91.803 61 4 1 1 60 598913399 598913459 1.900000e-12 84.2
40 TraesCS6B01G129100 chr4D 91.525 59 4 1 1 58 52277648 52277590 2.460000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G129100 chr6B 125334981 125337954 2973 False 5493.000000 5493 100.000000 1 2974 1 chr6B.!!$F2 2973
1 TraesCS6B01G129100 chr6B 125379613 125381067 1454 False 1881.000000 1881 89.986000 1272 2728 1 chr6B.!!$F5 1456
2 TraesCS6B01G129100 chr6B 125404967 125406666 1699 False 1725.000000 1725 85.070000 1272 2970 1 chr6B.!!$F6 1698
3 TraesCS6B01G129100 chr6D 55403256 55405500 2244 False 1862.000000 1862 81.913000 692 2970 1 chr6D.!!$F2 2278
4 TraesCS6B01G129100 chr6D 55104367 55106358 1991 False 1525.000000 2948 93.286000 692 2728 2 chr6D.!!$F3 2036
5 TraesCS6B01G129100 chr6D 55628572 55630777 2205 False 920.333333 2217 93.208667 692 2974 3 chr6D.!!$F4 2282
6 TraesCS6B01G129100 chr6A 67054016 67055451 1435 True 1138.000000 1138 81.094000 1272 2706 1 chr6A.!!$R1 1434
7 TraesCS6B01G129100 chr6A 69132159 69134277 2118 False 1094.500000 1845 85.363000 809 2974 2 chr6A.!!$F2 2165
8 TraesCS6B01G129100 chr6A 66373476 66374905 1429 False 1079.000000 1079 80.335000 1272 2702 1 chr6A.!!$F1 1430
9 TraesCS6B01G129100 chr6A 516418254 516418778 524 True 444.000000 444 82.084000 61 604 1 chr6A.!!$R2 543
10 TraesCS6B01G129100 chr7D 192447563 192448994 1431 False 1090.000000 1090 80.527000 1272 2706 1 chr7D.!!$F1 1434
11 TraesCS6B01G129100 chr2A 644877838 644878433 595 False 503.000000 503 82.102000 61 663 1 chr2A.!!$F2 602
12 TraesCS6B01G129100 chr7B 6126687 6127277 590 False 466.000000 466 81.188000 64 660 1 chr7B.!!$F1 596
13 TraesCS6B01G129100 chr7B 202350968 202351533 565 False 337.000000 337 77.759000 67 663 1 chr7B.!!$F2 596
14 TraesCS6B01G129100 chr2B 769107074 769107643 569 False 436.000000 436 80.789000 89 663 1 chr2B.!!$F1 574
15 TraesCS6B01G129100 chr2B 719957964 719958509 545 True 337.000000 337 78.136000 67 617 1 chr2B.!!$R3 550
16 TraesCS6B01G129100 chr5D 525740397 525740929 532 True 409.000000 409 80.663000 64 602 1 chr5D.!!$R1 538
17 TraesCS6B01G129100 chr2D 453762918 453763528 610 True 327.000000 327 76.786000 61 662 1 chr2D.!!$R2 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 242 0.324368 ACATGGTAGAGTGCCGGAGA 60.324 55.0 5.05 0.0 0.00 3.71 F
463 483 0.462047 GTGGGGCCACATCGTTAGAG 60.462 60.0 13.06 0.0 45.53 2.43 F
1268 1438 0.321671 GTCTGACCAACCAGCTGCTA 59.678 55.0 8.66 0.0 34.28 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1303 0.956410 AGACGGAGGTCAGACACTCG 60.956 60.000 2.17 5.13 45.92 4.18 R
1692 1871 1.969208 CATGCCTAGAGCCTCATCTGA 59.031 52.381 0.00 0.00 42.71 3.27 R
2752 2934 0.107214 ATAACCCTGGGTCATGCACG 60.107 55.000 20.85 0.00 33.12 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.869315 AAGACCTTCTTTGAAAGAGTTAGC 57.131 37.500 7.76 0.00 39.03 3.09
29 30 6.181206 AGACCTTCTTTGAAAGAGTTAGCT 57.819 37.500 7.76 0.00 39.03 3.32
30 31 5.994668 AGACCTTCTTTGAAAGAGTTAGCTG 59.005 40.000 7.76 0.00 39.03 4.24
31 32 5.930135 ACCTTCTTTGAAAGAGTTAGCTGA 58.070 37.500 7.76 0.00 39.03 4.26
32 33 5.760743 ACCTTCTTTGAAAGAGTTAGCTGAC 59.239 40.000 7.76 0.00 39.03 3.51
33 34 5.107298 CCTTCTTTGAAAGAGTTAGCTGACG 60.107 44.000 7.76 0.00 39.03 4.35
34 35 4.307432 TCTTTGAAAGAGTTAGCTGACGG 58.693 43.478 3.02 0.00 32.71 4.79
35 36 2.080286 TGAAAGAGTTAGCTGACGGC 57.920 50.000 2.59 0.00 42.19 5.68
36 37 1.343142 TGAAAGAGTTAGCTGACGGCA 59.657 47.619 9.39 0.00 44.79 5.69
37 38 2.224185 TGAAAGAGTTAGCTGACGGCAA 60.224 45.455 9.39 0.00 44.79 4.52
38 39 2.543777 AAGAGTTAGCTGACGGCAAA 57.456 45.000 9.39 0.00 44.79 3.68
39 40 2.086054 AGAGTTAGCTGACGGCAAAG 57.914 50.000 9.39 0.00 44.79 2.77
40 41 1.618837 AGAGTTAGCTGACGGCAAAGA 59.381 47.619 9.39 0.00 44.79 2.52
41 42 2.234908 AGAGTTAGCTGACGGCAAAGAT 59.765 45.455 9.39 0.00 44.79 2.40
42 43 2.605366 GAGTTAGCTGACGGCAAAGATC 59.395 50.000 9.39 0.00 44.79 2.75
43 44 1.666189 GTTAGCTGACGGCAAAGATCC 59.334 52.381 9.39 0.00 44.79 3.36
44 45 1.195115 TAGCTGACGGCAAAGATCCT 58.805 50.000 9.39 0.00 44.79 3.24
45 46 0.392193 AGCTGACGGCAAAGATCCTG 60.392 55.000 9.39 0.00 44.79 3.86
46 47 0.391661 GCTGACGGCAAAGATCCTGA 60.392 55.000 0.00 0.00 41.35 3.86
47 48 1.745141 GCTGACGGCAAAGATCCTGAT 60.745 52.381 0.00 0.00 41.35 2.90
48 49 2.636830 CTGACGGCAAAGATCCTGATT 58.363 47.619 0.00 0.00 0.00 2.57
49 50 2.611292 CTGACGGCAAAGATCCTGATTC 59.389 50.000 0.00 0.00 0.00 2.52
50 51 1.943340 GACGGCAAAGATCCTGATTCC 59.057 52.381 0.00 0.00 0.00 3.01
51 52 1.281867 ACGGCAAAGATCCTGATTCCA 59.718 47.619 0.00 0.00 0.00 3.53
52 53 1.945394 CGGCAAAGATCCTGATTCCAG 59.055 52.381 0.00 0.00 40.09 3.86
53 54 2.681976 CGGCAAAGATCCTGATTCCAGT 60.682 50.000 0.00 0.00 38.74 4.00
54 55 3.432186 CGGCAAAGATCCTGATTCCAGTA 60.432 47.826 0.00 0.00 38.74 2.74
55 56 4.133078 GGCAAAGATCCTGATTCCAGTAG 58.867 47.826 0.00 0.00 38.74 2.57
56 57 4.384647 GGCAAAGATCCTGATTCCAGTAGT 60.385 45.833 0.00 0.00 38.74 2.73
57 58 4.574013 GCAAAGATCCTGATTCCAGTAGTG 59.426 45.833 0.00 0.00 38.74 2.74
58 59 5.627735 GCAAAGATCCTGATTCCAGTAGTGA 60.628 44.000 0.00 0.00 38.74 3.41
59 60 6.590068 CAAAGATCCTGATTCCAGTAGTGAT 58.410 40.000 0.00 0.00 38.74 3.06
84 85 1.305381 CTCCTCCTCCGGTTCTGGT 60.305 63.158 0.00 0.00 0.00 4.00
207 222 4.225942 ACAATAGGTGATCTTGCTCTGGAA 59.774 41.667 0.00 0.00 0.00 3.53
214 229 3.519107 TGATCTTGCTCTGGAACATGGTA 59.481 43.478 0.00 0.00 38.20 3.25
226 242 0.324368 ACATGGTAGAGTGCCGGAGA 60.324 55.000 5.05 0.00 0.00 3.71
239 255 3.386237 GGAGAGTGGGCAGAGCGT 61.386 66.667 0.00 0.00 0.00 5.07
241 257 2.601666 AGAGTGGGCAGAGCGTCA 60.602 61.111 0.00 0.00 0.00 4.35
253 270 3.444805 GCGTCAGAGCGGGAGAGT 61.445 66.667 0.00 0.00 0.00 3.24
263 280 1.000771 CGGGAGAGTGAGGAGGTGA 60.001 63.158 0.00 0.00 0.00 4.02
320 338 2.154747 TGGGTTAGGGTTGCGGGAA 61.155 57.895 0.00 0.00 0.00 3.97
339 357 0.828677 AGTCGGCCGGCTTAAATAGT 59.171 50.000 30.20 0.98 0.00 2.12
463 483 0.462047 GTGGGGCCACATCGTTAGAG 60.462 60.000 13.06 0.00 45.53 2.43
464 484 0.907704 TGGGGCCACATCGTTAGAGT 60.908 55.000 1.54 0.00 0.00 3.24
511 562 2.828868 GGCGTCCCATATCTGCCA 59.171 61.111 0.00 0.00 45.06 4.92
531 582 5.256474 GCCACATATTTAGGCTGGATATGT 58.744 41.667 21.84 21.84 43.88 2.29
559 610 1.568025 GTCAGCCCGAACGTTTGAC 59.432 57.895 17.38 14.79 0.00 3.18
572 623 1.305201 GTTTGACGGCTGTTTGAGGA 58.695 50.000 0.00 0.00 0.00 3.71
581 632 0.895530 CTGTTTGAGGAGCCCGTCTA 59.104 55.000 0.00 0.00 0.00 2.59
619 670 2.514592 ACATTGATCAGGCGGCCG 60.515 61.111 24.05 24.05 0.00 6.13
634 690 3.214123 CCGGACGTATGAGGCGGA 61.214 66.667 0.00 0.00 0.00 5.54
663 719 2.271800 GTCCGGTTGTAGATGCTCTTG 58.728 52.381 0.00 0.00 0.00 3.02
664 720 1.899814 TCCGGTTGTAGATGCTCTTGT 59.100 47.619 0.00 0.00 0.00 3.16
665 721 3.093814 TCCGGTTGTAGATGCTCTTGTA 58.906 45.455 0.00 0.00 0.00 2.41
666 722 3.119245 TCCGGTTGTAGATGCTCTTGTAC 60.119 47.826 0.00 0.00 0.00 2.90
667 723 3.187700 CGGTTGTAGATGCTCTTGTACC 58.812 50.000 0.00 0.00 0.00 3.34
668 724 3.368013 CGGTTGTAGATGCTCTTGTACCA 60.368 47.826 0.00 0.00 0.00 3.25
669 725 4.680708 CGGTTGTAGATGCTCTTGTACCAT 60.681 45.833 0.00 0.00 0.00 3.55
670 726 4.572389 GGTTGTAGATGCTCTTGTACCATG 59.428 45.833 0.00 0.00 0.00 3.66
671 727 5.178797 GTTGTAGATGCTCTTGTACCATGT 58.821 41.667 0.00 0.00 0.00 3.21
672 728 5.011090 TGTAGATGCTCTTGTACCATGTC 57.989 43.478 0.00 0.00 0.00 3.06
673 729 3.550437 AGATGCTCTTGTACCATGTCC 57.450 47.619 0.00 0.00 0.00 4.02
674 730 3.110705 AGATGCTCTTGTACCATGTCCT 58.889 45.455 0.00 0.00 0.00 3.85
675 731 4.290093 AGATGCTCTTGTACCATGTCCTA 58.710 43.478 0.00 0.00 0.00 2.94
676 732 4.904251 AGATGCTCTTGTACCATGTCCTAT 59.096 41.667 0.00 0.00 0.00 2.57
677 733 4.406648 TGCTCTTGTACCATGTCCTATG 57.593 45.455 0.00 0.00 0.00 2.23
678 734 3.134458 GCTCTTGTACCATGTCCTATGC 58.866 50.000 0.00 0.00 0.00 3.14
679 735 3.384668 CTCTTGTACCATGTCCTATGCG 58.615 50.000 0.00 0.00 0.00 4.73
680 736 2.764010 TCTTGTACCATGTCCTATGCGT 59.236 45.455 0.00 0.00 0.00 5.24
681 737 2.595124 TGTACCATGTCCTATGCGTG 57.405 50.000 0.00 0.00 0.00 5.34
682 738 1.138069 TGTACCATGTCCTATGCGTGG 59.862 52.381 0.00 0.00 45.81 4.94
684 740 3.476740 CCATGTCCTATGCGTGGTT 57.523 52.632 0.00 0.00 38.02 3.67
685 741 1.016627 CCATGTCCTATGCGTGGTTG 58.983 55.000 0.00 0.00 38.02 3.77
686 742 1.406751 CCATGTCCTATGCGTGGTTGA 60.407 52.381 0.00 0.00 38.02 3.18
687 743 2.564771 CATGTCCTATGCGTGGTTGAT 58.435 47.619 0.00 0.00 0.00 2.57
688 744 2.779755 TGTCCTATGCGTGGTTGATT 57.220 45.000 0.00 0.00 0.00 2.57
689 745 3.066291 TGTCCTATGCGTGGTTGATTT 57.934 42.857 0.00 0.00 0.00 2.17
690 746 3.006940 TGTCCTATGCGTGGTTGATTTC 58.993 45.455 0.00 0.00 0.00 2.17
700 756 5.049680 TGCGTGGTTGATTTCTTTTCTCTAC 60.050 40.000 0.00 0.00 0.00 2.59
720 777 4.278513 CTTCAACCACCGCCCCCA 62.279 66.667 0.00 0.00 0.00 4.96
721 778 4.589675 TTCAACCACCGCCCCCAC 62.590 66.667 0.00 0.00 0.00 4.61
733 790 4.087892 CCCCACTCTGGCCGTCTG 62.088 72.222 0.00 0.00 35.79 3.51
734 791 4.767255 CCCACTCTGGCCGTCTGC 62.767 72.222 0.00 0.00 35.79 4.26
746 803 3.712881 GTCTGCCAACACGCCGTC 61.713 66.667 0.00 0.00 0.00 4.79
760 817 4.379243 CGTCGCTGCCCACTTCCT 62.379 66.667 0.00 0.00 0.00 3.36
966 1067 3.873952 GCATTATTGCGAGAAGAGAACCT 59.126 43.478 0.00 0.00 39.49 3.50
1065 1217 2.760092 GCCAGCCCATCTGAATTTACAA 59.240 45.455 0.00 0.00 45.72 2.41
1076 1228 8.566260 CCATCTGAATTTACAAGATTCATCTCC 58.434 37.037 0.57 0.00 41.28 3.71
1090 1242 6.126940 AGATTCATCTCCTAAGCAAAGTGCTA 60.127 38.462 2.64 0.00 43.00 3.49
1170 1322 0.956410 CGAGTGTCTGACCTCCGTCT 60.956 60.000 15.84 2.99 39.94 4.18
1257 1427 1.906824 GACCTCCCACGTCTGACCA 60.907 63.158 1.55 0.00 0.00 4.02
1258 1428 1.458777 ACCTCCCACGTCTGACCAA 60.459 57.895 1.55 0.00 0.00 3.67
1259 1429 1.004918 CCTCCCACGTCTGACCAAC 60.005 63.158 1.55 0.00 0.00 3.77
1261 1431 1.754380 CTCCCACGTCTGACCAACCA 61.754 60.000 1.55 0.00 0.00 3.67
1262 1432 1.301716 CCCACGTCTGACCAACCAG 60.302 63.158 1.55 0.00 35.55 4.00
1265 1435 1.069765 ACGTCTGACCAACCAGCTG 59.930 57.895 6.78 6.78 34.28 4.24
1268 1438 0.321671 GTCTGACCAACCAGCTGCTA 59.678 55.000 8.66 0.00 34.28 3.49
1269 1439 1.055849 TCTGACCAACCAGCTGCTAA 58.944 50.000 8.66 0.00 34.28 3.09
1270 1440 1.419762 TCTGACCAACCAGCTGCTAAA 59.580 47.619 8.66 0.00 34.28 1.85
1336 1509 1.360185 GATCATCTGGGCTCTGGGAT 58.640 55.000 0.00 0.00 0.00 3.85
1379 1552 4.499040 CACCAACTGTTCGACAAATTGTTC 59.501 41.667 0.00 0.00 0.00 3.18
1381 1554 3.982576 ACTGTTCGACAAATTGTTCCC 57.017 42.857 0.00 0.00 0.00 3.97
1578 1757 1.913778 AATTGAGTGCTGCCACATGA 58.086 45.000 0.00 0.00 44.53 3.07
1582 1761 3.356267 GTGCTGCCACATGACGCA 61.356 61.111 0.00 5.45 41.67 5.24
1692 1871 2.089980 GCCTCTGTGACATGAAGCAAT 58.910 47.619 0.00 0.00 0.00 3.56
1882 2062 8.249638 TGTGGTTTCATACACAATAATCATTGG 58.750 33.333 0.00 0.00 44.97 3.16
1973 2153 0.246360 TGCCTGATGTGGTGACGTAG 59.754 55.000 0.00 0.00 0.00 3.51
2079 2259 1.588404 GACCGAATGCTGTGACATACG 59.412 52.381 0.00 0.00 0.00 3.06
2163 2343 2.751166 AATGAGAGGTCAAGGTGTCG 57.249 50.000 0.00 0.00 35.88 4.35
2388 2570 3.316029 CGGTATCGTACCCAACATCTGTA 59.684 47.826 8.13 0.00 46.27 2.74
2389 2571 4.022589 CGGTATCGTACCCAACATCTGTAT 60.023 45.833 8.13 0.00 46.27 2.29
2429 2611 6.720112 AATGCATATGCTAAGTGTGGAATT 57.280 33.333 27.13 12.07 42.66 2.17
2479 2661 1.808945 CATGTTGAAGCAGGGAGTGAC 59.191 52.381 0.00 0.00 0.00 3.67
2549 2731 2.641305 GGCAGGATGGATGATGCTATC 58.359 52.381 0.00 0.00 38.71 2.08
2550 2732 2.026542 GGCAGGATGGATGATGCTATCA 60.027 50.000 2.05 2.05 39.47 2.15
2552 2734 3.690139 GCAGGATGGATGATGCTATCAAG 59.310 47.826 3.47 0.00 38.85 3.02
2583 2765 8.537858 TCAATGAGATGATTGATATGGGAGTAG 58.462 37.037 0.00 0.00 37.41 2.57
2618 2800 7.886629 AACTATTTACAGGTGCATGATTCAT 57.113 32.000 0.00 0.00 0.00 2.57
2628 2810 6.477688 CAGGTGCATGATTCATGGTTATTTTC 59.522 38.462 24.29 8.69 41.64 2.29
2629 2811 5.459762 GGTGCATGATTCATGGTTATTTTCG 59.540 40.000 24.29 0.00 41.64 3.46
2636 2818 4.630894 TCATGGTTATTTTCGTCATGGC 57.369 40.909 0.00 0.00 36.72 4.40
2637 2819 4.013050 TCATGGTTATTTTCGTCATGGCA 58.987 39.130 0.00 0.00 36.72 4.92
2651 2833 3.365820 GTCATGGCAATTTCTTGAAAGCG 59.634 43.478 0.00 0.00 34.04 4.68
2694 2876 4.041198 TGAAGAACAAGGGTATTCGTCCTT 59.959 41.667 0.00 0.00 43.55 3.36
2702 2884 0.179156 GTATTCGTCCTTGTCCGCGA 60.179 55.000 8.23 0.00 0.00 5.87
2703 2885 0.527113 TATTCGTCCTTGTCCGCGAA 59.473 50.000 8.23 0.00 45.32 4.70
2751 2933 3.580458 ACCTCATGACAGAGCTGTTTACT 59.420 43.478 4.42 0.00 45.05 2.24
2752 2934 4.180057 CCTCATGACAGAGCTGTTTACTC 58.820 47.826 4.42 0.00 45.05 2.59
2761 2943 2.069273 AGCTGTTTACTCGTGCATGAC 58.931 47.619 3.97 0.00 0.00 3.06
2768 2950 2.927856 TCGTGCATGACCCAGGGT 60.928 61.111 12.53 12.53 39.44 4.34
2774 2956 2.427095 GTGCATGACCCAGGGTTATTTC 59.573 50.000 14.23 8.88 35.25 2.17
2789 2971 4.881850 GGTTATTTCCGTCATGGTGATTCT 59.118 41.667 0.00 0.00 39.52 2.40
2790 2972 5.220854 GGTTATTTCCGTCATGGTGATTCTG 60.221 44.000 0.00 0.00 39.52 3.02
2791 2973 1.737838 TTCCGTCATGGTGATTCTGC 58.262 50.000 0.00 0.00 39.52 4.26
2801 2983 2.633967 TGGTGATTCTGCAAAAGCCAAT 59.366 40.909 0.00 0.00 0.00 3.16
2814 2996 5.642919 GCAAAAGCCAATGAATTGATTACCA 59.357 36.000 4.58 0.00 40.14 3.25
2857 3040 3.133721 AGTCATAGGCTGCAGAAGGTAAG 59.866 47.826 20.43 0.04 0.00 2.34
2900 3083 4.072131 TCTTTGACTTGGTTATCTGCACC 58.928 43.478 0.00 0.00 34.52 5.01
2910 3094 0.396556 TATCTGCACCGGTAGAGGCA 60.397 55.000 15.69 15.69 39.20 4.75
2921 3105 2.998670 CGGTAGAGGCATGATGCTATTG 59.001 50.000 17.84 0.00 44.28 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.012799 CAGCTAACTCTTTCAAAGAAGGTCTTT 59.987 37.037 0.48 0.00 46.75 2.52
5 6 6.484977 CAGCTAACTCTTTCAAAGAAGGTCTT 59.515 38.462 0.48 0.00 38.59 3.01
6 7 5.994668 CAGCTAACTCTTTCAAAGAAGGTCT 59.005 40.000 0.48 0.00 37.02 3.85
7 8 5.992217 TCAGCTAACTCTTTCAAAGAAGGTC 59.008 40.000 0.48 0.00 37.02 3.85
8 9 5.760743 GTCAGCTAACTCTTTCAAAGAAGGT 59.239 40.000 0.48 0.00 37.02 3.50
9 10 5.107298 CGTCAGCTAACTCTTTCAAAGAAGG 60.107 44.000 0.48 0.00 37.02 3.46
10 11 5.107298 CCGTCAGCTAACTCTTTCAAAGAAG 60.107 44.000 0.48 0.00 37.02 2.85
11 12 4.750098 CCGTCAGCTAACTCTTTCAAAGAA 59.250 41.667 0.48 0.00 37.02 2.52
12 13 4.307432 CCGTCAGCTAACTCTTTCAAAGA 58.693 43.478 0.00 0.00 35.87 2.52
13 14 3.120511 GCCGTCAGCTAACTCTTTCAAAG 60.121 47.826 0.00 0.00 38.99 2.77
14 15 2.806244 GCCGTCAGCTAACTCTTTCAAA 59.194 45.455 0.00 0.00 38.99 2.69
15 16 2.224185 TGCCGTCAGCTAACTCTTTCAA 60.224 45.455 0.00 0.00 44.23 2.69
16 17 1.343142 TGCCGTCAGCTAACTCTTTCA 59.657 47.619 0.00 0.00 44.23 2.69
17 18 2.080286 TGCCGTCAGCTAACTCTTTC 57.920 50.000 0.00 0.00 44.23 2.62
18 19 2.543777 TTGCCGTCAGCTAACTCTTT 57.456 45.000 0.00 0.00 44.23 2.52
19 20 2.037251 TCTTTGCCGTCAGCTAACTCTT 59.963 45.455 0.00 0.00 44.23 2.85
20 21 1.618837 TCTTTGCCGTCAGCTAACTCT 59.381 47.619 0.00 0.00 44.23 3.24
21 22 2.080286 TCTTTGCCGTCAGCTAACTC 57.920 50.000 0.00 0.00 44.23 3.01
22 23 2.622436 GATCTTTGCCGTCAGCTAACT 58.378 47.619 0.00 0.00 44.23 2.24
23 24 1.666189 GGATCTTTGCCGTCAGCTAAC 59.334 52.381 0.00 0.00 44.23 2.34
24 25 1.555075 AGGATCTTTGCCGTCAGCTAA 59.445 47.619 0.00 0.00 44.23 3.09
25 26 1.134699 CAGGATCTTTGCCGTCAGCTA 60.135 52.381 0.00 0.00 44.23 3.32
26 27 0.392193 CAGGATCTTTGCCGTCAGCT 60.392 55.000 0.00 0.00 44.23 4.24
27 28 0.391661 TCAGGATCTTTGCCGTCAGC 60.392 55.000 0.00 0.00 44.14 4.26
28 29 2.322355 ATCAGGATCTTTGCCGTCAG 57.678 50.000 0.00 0.00 0.00 3.51
29 30 2.632377 GAATCAGGATCTTTGCCGTCA 58.368 47.619 0.00 0.00 0.00 4.35
30 31 1.943340 GGAATCAGGATCTTTGCCGTC 59.057 52.381 0.00 0.00 0.00 4.79
31 32 1.281867 TGGAATCAGGATCTTTGCCGT 59.718 47.619 0.00 0.00 0.00 5.68
32 33 1.945394 CTGGAATCAGGATCTTTGCCG 59.055 52.381 0.00 0.00 37.36 5.69
33 34 3.010200 ACTGGAATCAGGATCTTTGCC 57.990 47.619 0.00 0.00 44.99 4.52
34 35 4.574013 CACTACTGGAATCAGGATCTTTGC 59.426 45.833 0.00 0.00 44.99 3.68
35 36 5.982356 TCACTACTGGAATCAGGATCTTTG 58.018 41.667 0.00 0.00 44.99 2.77
36 37 6.614906 AGATCACTACTGGAATCAGGATCTTT 59.385 38.462 0.00 0.00 44.99 2.52
37 38 6.142498 AGATCACTACTGGAATCAGGATCTT 58.858 40.000 0.00 0.00 44.99 2.40
38 39 5.714863 AGATCACTACTGGAATCAGGATCT 58.285 41.667 0.00 0.00 44.99 2.75
39 40 5.047377 GGAGATCACTACTGGAATCAGGATC 60.047 48.000 0.00 0.00 44.99 3.36
40 41 4.837860 GGAGATCACTACTGGAATCAGGAT 59.162 45.833 0.00 0.00 44.99 3.24
41 42 4.078922 AGGAGATCACTACTGGAATCAGGA 60.079 45.833 0.00 0.00 44.99 3.86
42 43 4.222336 AGGAGATCACTACTGGAATCAGG 58.778 47.826 0.00 0.00 44.99 3.86
43 44 4.280677 GGAGGAGATCACTACTGGAATCAG 59.719 50.000 0.00 0.00 46.10 2.90
44 45 4.078922 AGGAGGAGATCACTACTGGAATCA 60.079 45.833 1.68 0.00 37.45 2.57
45 46 4.479158 AGGAGGAGATCACTACTGGAATC 58.521 47.826 1.68 0.00 37.45 2.52
46 47 4.479158 GAGGAGGAGATCACTACTGGAAT 58.521 47.826 6.89 0.00 37.45 3.01
47 48 3.373220 GGAGGAGGAGATCACTACTGGAA 60.373 52.174 6.89 0.00 37.45 3.53
48 49 2.175931 GGAGGAGGAGATCACTACTGGA 59.824 54.545 6.89 0.00 37.45 3.86
49 50 2.176798 AGGAGGAGGAGATCACTACTGG 59.823 54.545 6.89 0.00 37.45 4.00
50 51 3.486383 GAGGAGGAGGAGATCACTACTG 58.514 54.545 6.89 0.00 37.45 2.74
51 52 2.445525 GGAGGAGGAGGAGATCACTACT 59.554 54.545 2.08 2.08 40.49 2.57
52 53 2.445525 AGGAGGAGGAGGAGATCACTAC 59.554 54.545 0.00 0.00 0.00 2.73
53 54 2.714250 GAGGAGGAGGAGGAGATCACTA 59.286 54.545 0.00 0.00 0.00 2.74
54 55 1.499007 GAGGAGGAGGAGGAGATCACT 59.501 57.143 0.00 0.00 0.00 3.41
55 56 1.480498 GGAGGAGGAGGAGGAGATCAC 60.480 61.905 0.00 0.00 0.00 3.06
56 57 0.856982 GGAGGAGGAGGAGGAGATCA 59.143 60.000 0.00 0.00 0.00 2.92
57 58 0.251165 CGGAGGAGGAGGAGGAGATC 60.251 65.000 0.00 0.00 0.00 2.75
58 59 1.850549 CGGAGGAGGAGGAGGAGAT 59.149 63.158 0.00 0.00 0.00 2.75
59 60 3.336820 CGGAGGAGGAGGAGGAGA 58.663 66.667 0.00 0.00 0.00 3.71
185 200 4.412796 TCCAGAGCAAGATCACCTATTG 57.587 45.455 0.00 0.00 0.00 1.90
207 222 0.324368 TCTCCGGCACTCTACCATGT 60.324 55.000 0.00 0.00 0.00 3.21
214 229 2.681778 CCCACTCTCCGGCACTCT 60.682 66.667 0.00 0.00 0.00 3.24
226 242 2.601666 TCTGACGCTCTGCCCACT 60.602 61.111 0.00 0.00 0.00 4.00
239 255 1.379176 CCTCACTCTCCCGCTCTGA 60.379 63.158 0.00 0.00 0.00 3.27
241 257 1.077068 CTCCTCACTCTCCCGCTCT 60.077 63.158 0.00 0.00 0.00 4.09
253 270 1.617018 CGAGCCCATTCACCTCCTCA 61.617 60.000 0.00 0.00 0.00 3.86
263 280 4.473520 CGCCAGTCCGAGCCCATT 62.474 66.667 0.00 0.00 0.00 3.16
320 338 0.828677 ACTATTTAAGCCGGCCGACT 59.171 50.000 30.73 20.39 0.00 4.18
339 357 1.378531 CCGCCCAAGATGAAATTCGA 58.621 50.000 0.00 0.00 0.00 3.71
454 474 1.202417 CCGCCATGTCACTCTAACGAT 60.202 52.381 0.00 0.00 0.00 3.73
459 479 2.900273 GCCCGCCATGTCACTCTA 59.100 61.111 0.00 0.00 0.00 2.43
493 534 2.032681 GGCAGATATGGGACGCCC 59.967 66.667 7.87 7.87 45.71 6.13
494 535 1.598130 GTGGCAGATATGGGACGCC 60.598 63.158 0.00 0.00 43.28 5.68
495 536 0.250467 ATGTGGCAGATATGGGACGC 60.250 55.000 0.00 0.00 0.00 5.19
496 537 3.616956 ATATGTGGCAGATATGGGACG 57.383 47.619 15.60 0.00 0.00 4.79
497 538 5.882557 CCTAAATATGTGGCAGATATGGGAC 59.117 44.000 16.87 0.00 0.00 4.46
511 562 6.273260 ACCTCACATATCCAGCCTAAATATGT 59.727 38.462 5.68 5.68 43.78 2.29
605 656 4.467084 GTCCGGCCGCCTGATCAA 62.467 66.667 22.85 0.00 0.00 2.57
619 670 1.202486 TCAAATCCGCCTCATACGTCC 60.202 52.381 0.00 0.00 0.00 4.79
634 690 3.170717 TCTACAACCGGACCTCTCAAAT 58.829 45.455 9.46 0.00 0.00 2.32
663 719 1.138266 ACCACGCATAGGACATGGTAC 59.862 52.381 0.00 0.00 41.90 3.34
664 720 1.491668 ACCACGCATAGGACATGGTA 58.508 50.000 0.00 0.00 41.90 3.25
665 721 0.618458 AACCACGCATAGGACATGGT 59.382 50.000 0.00 0.00 45.66 3.55
666 722 1.016627 CAACCACGCATAGGACATGG 58.983 55.000 0.00 0.00 36.46 3.66
667 723 2.022764 TCAACCACGCATAGGACATG 57.977 50.000 0.00 0.00 0.00 3.21
668 724 3.281727 AATCAACCACGCATAGGACAT 57.718 42.857 0.00 0.00 0.00 3.06
669 725 2.779755 AATCAACCACGCATAGGACA 57.220 45.000 0.00 0.00 0.00 4.02
670 726 3.270877 AGAAATCAACCACGCATAGGAC 58.729 45.455 0.00 0.00 0.00 3.85
671 727 3.627395 AGAAATCAACCACGCATAGGA 57.373 42.857 0.00 0.00 0.00 2.94
672 728 4.701956 AAAGAAATCAACCACGCATAGG 57.298 40.909 0.00 0.00 0.00 2.57
673 729 5.942872 AGAAAAGAAATCAACCACGCATAG 58.057 37.500 0.00 0.00 0.00 2.23
674 730 5.705441 AGAGAAAAGAAATCAACCACGCATA 59.295 36.000 0.00 0.00 0.00 3.14
675 731 4.520492 AGAGAAAAGAAATCAACCACGCAT 59.480 37.500 0.00 0.00 0.00 4.73
676 732 3.882888 AGAGAAAAGAAATCAACCACGCA 59.117 39.130 0.00 0.00 0.00 5.24
677 733 4.489679 AGAGAAAAGAAATCAACCACGC 57.510 40.909 0.00 0.00 0.00 5.34
678 734 6.593978 CAGTAGAGAAAAGAAATCAACCACG 58.406 40.000 0.00 0.00 0.00 4.94
679 735 6.205658 AGCAGTAGAGAAAAGAAATCAACCAC 59.794 38.462 0.00 0.00 0.00 4.16
680 736 6.299141 AGCAGTAGAGAAAAGAAATCAACCA 58.701 36.000 0.00 0.00 0.00 3.67
681 737 6.809630 AGCAGTAGAGAAAAGAAATCAACC 57.190 37.500 0.00 0.00 0.00 3.77
682 738 7.865707 TGAAGCAGTAGAGAAAAGAAATCAAC 58.134 34.615 0.00 0.00 0.00 3.18
683 739 8.345565 GTTGAAGCAGTAGAGAAAAGAAATCAA 58.654 33.333 0.00 0.00 0.00 2.57
684 740 7.041098 GGTTGAAGCAGTAGAGAAAAGAAATCA 60.041 37.037 0.00 0.00 0.00 2.57
685 741 7.041098 TGGTTGAAGCAGTAGAGAAAAGAAATC 60.041 37.037 0.00 0.00 0.00 2.17
686 742 6.772716 TGGTTGAAGCAGTAGAGAAAAGAAAT 59.227 34.615 0.00 0.00 0.00 2.17
687 743 6.038271 GTGGTTGAAGCAGTAGAGAAAAGAAA 59.962 38.462 0.00 0.00 0.00 2.52
688 744 5.527582 GTGGTTGAAGCAGTAGAGAAAAGAA 59.472 40.000 0.00 0.00 0.00 2.52
689 745 5.057149 GTGGTTGAAGCAGTAGAGAAAAGA 58.943 41.667 0.00 0.00 0.00 2.52
690 746 4.214332 GGTGGTTGAAGCAGTAGAGAAAAG 59.786 45.833 0.00 0.00 0.00 2.27
700 756 3.365265 GGGCGGTGGTTGAAGCAG 61.365 66.667 0.00 0.00 0.00 4.24
729 786 3.712881 GACGGCGTGTTGGCAGAC 61.713 66.667 21.19 0.00 45.16 3.51
743 800 3.001902 TAGGAAGTGGGCAGCGACG 62.002 63.158 0.00 0.00 0.00 5.12
744 801 1.448013 GTAGGAAGTGGGCAGCGAC 60.448 63.158 0.00 0.00 0.00 5.19
745 802 1.605058 GAGTAGGAAGTGGGCAGCGA 61.605 60.000 0.00 0.00 0.00 4.93
746 803 1.153549 GAGTAGGAAGTGGGCAGCG 60.154 63.158 0.00 0.00 0.00 5.18
747 804 0.107945 CAGAGTAGGAAGTGGGCAGC 60.108 60.000 0.00 0.00 0.00 5.25
748 805 0.539051 CCAGAGTAGGAAGTGGGCAG 59.461 60.000 0.00 0.00 0.00 4.85
749 806 1.553690 GCCAGAGTAGGAAGTGGGCA 61.554 60.000 0.00 0.00 39.66 5.36
750 807 1.222113 GCCAGAGTAGGAAGTGGGC 59.778 63.158 0.00 0.00 0.00 5.36
751 808 1.908483 GGCCAGAGTAGGAAGTGGG 59.092 63.158 0.00 0.00 0.00 4.61
752 809 1.517832 CGGCCAGAGTAGGAAGTGG 59.482 63.158 2.24 0.00 0.00 4.00
753 810 1.153549 GCGGCCAGAGTAGGAAGTG 60.154 63.158 2.24 0.00 0.00 3.16
754 811 2.359967 GGCGGCCAGAGTAGGAAGT 61.360 63.158 15.62 0.00 0.00 3.01
755 812 2.060980 AGGCGGCCAGAGTAGGAAG 61.061 63.158 23.09 0.00 0.00 3.46
756 813 2.038975 AGGCGGCCAGAGTAGGAA 59.961 61.111 23.09 0.00 0.00 3.36
757 814 2.759973 CAGGCGGCCAGAGTAGGA 60.760 66.667 23.09 0.00 0.00 2.94
758 815 4.537433 GCAGGCGGCCAGAGTAGG 62.537 72.222 23.09 2.41 36.11 3.18
949 1049 1.902508 TGGAGGTTCTCTTCTCGCAAT 59.097 47.619 0.00 0.00 0.00 3.56
966 1067 2.434843 CCTAGTCGCAGGCCATGGA 61.435 63.158 18.40 0.00 0.00 3.41
1065 1217 4.880696 GCACTTTGCTTAGGAGATGAATCT 59.119 41.667 0.00 0.00 40.96 2.40
1151 1303 0.956410 AGACGGAGGTCAGACACTCG 60.956 60.000 2.17 5.13 45.92 4.18
1692 1871 1.969208 CATGCCTAGAGCCTCATCTGA 59.031 52.381 0.00 0.00 42.71 3.27
1882 2062 6.424032 AGTTCACCCTCCTTAATTAATCCAC 58.576 40.000 0.00 0.00 0.00 4.02
2079 2259 4.384647 GGAATATCCATGGATCAGGCTACC 60.385 50.000 30.61 19.14 36.28 3.18
2163 2343 7.757624 TGTGTTGTGAGTAAAAAGATTTGGTTC 59.242 33.333 0.00 0.00 0.00 3.62
2172 2352 6.038161 TCCATGACTGTGTTGTGAGTAAAAAG 59.962 38.462 0.00 0.00 0.00 2.27
2181 2361 3.067106 GGTAGTCCATGACTGTGTTGTG 58.933 50.000 7.00 0.00 43.30 3.33
2287 2469 5.566826 GCGTACCCATGAAGCATAATAGAGA 60.567 44.000 0.00 0.00 0.00 3.10
2429 2611 5.052693 AGAAAAGCATAGCCACATCCATA 57.947 39.130 0.00 0.00 0.00 2.74
2479 2661 5.471456 GCTAAATATGTGACTTCATCAGGGG 59.529 44.000 0.00 0.00 38.28 4.79
2552 2734 9.856488 CCCATATCAATCATCTCATTGAATTTC 57.144 33.333 0.23 0.00 44.18 2.17
2583 2765 7.630924 CACCTGTAAATAGTTAAGCTATGTGC 58.369 38.462 0.00 0.00 40.12 4.57
2618 2800 5.398603 AATTGCCATGACGAAAATAACCA 57.601 34.783 0.00 0.00 0.00 3.67
2628 2810 3.365820 GCTTTCAAGAAATTGCCATGACG 59.634 43.478 0.00 0.00 0.00 4.35
2629 2811 3.365820 CGCTTTCAAGAAATTGCCATGAC 59.634 43.478 0.00 0.00 0.00 3.06
2636 2818 6.642131 TCAATTCCTTCGCTTTCAAGAAATTG 59.358 34.615 0.79 0.79 0.00 2.32
2637 2819 6.748132 TCAATTCCTTCGCTTTCAAGAAATT 58.252 32.000 0.00 0.00 0.00 1.82
2703 2885 5.513614 CCCTGGATCAATTCTTTGGCTTTTT 60.514 40.000 0.00 0.00 33.44 1.94
2740 2922 2.092838 GTCATGCACGAGTAAACAGCTC 59.907 50.000 0.00 0.00 0.00 4.09
2742 2924 1.128692 GGTCATGCACGAGTAAACAGC 59.871 52.381 0.00 0.00 0.00 4.40
2751 2933 1.195442 TAACCCTGGGTCATGCACGA 61.195 55.000 20.85 0.00 33.12 4.35
2752 2934 0.107214 ATAACCCTGGGTCATGCACG 60.107 55.000 20.85 0.00 33.12 5.34
2761 2943 2.297701 CATGACGGAAATAACCCTGGG 58.702 52.381 12.28 12.28 0.00 4.45
2768 2950 4.335315 GCAGAATCACCATGACGGAAATAA 59.665 41.667 0.00 0.00 38.63 1.40
2774 2956 1.452110 TTGCAGAATCACCATGACGG 58.548 50.000 0.00 0.00 42.50 4.79
2790 2972 5.642919 TGGTAATCAATTCATTGGCTTTTGC 59.357 36.000 0.00 0.00 46.64 3.68
2791 2973 7.670009 TTGGTAATCAATTCATTGGCTTTTG 57.330 32.000 0.00 0.00 38.30 2.44
2801 2983 7.894708 TGCTCTTCATTTTGGTAATCAATTCA 58.105 30.769 0.00 0.00 34.98 2.57
2824 3006 5.702670 TGCAGCCTATGACTAATATTCTTGC 59.297 40.000 0.00 0.00 0.00 4.01
2835 3017 1.577736 ACCTTCTGCAGCCTATGACT 58.422 50.000 9.47 0.00 0.00 3.41
2857 3040 9.014297 CAAAGATAATGTATCCTTCCATTACCC 57.986 37.037 0.00 0.00 36.62 3.69
2895 3078 1.337384 ATCATGCCTCTACCGGTGCA 61.337 55.000 19.93 19.05 38.23 4.57
2900 3083 2.998670 CAATAGCATCATGCCTCTACCG 59.001 50.000 5.84 0.00 46.52 4.02
2921 3105 5.001232 TCCACTGGTAACTGAAGTAAATGC 58.999 41.667 0.00 0.00 39.15 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.