Multiple sequence alignment - TraesCS6B01G128800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G128800 chr6B 100.000 2627 0 0 442 3068 124465490 124468116 0.000000e+00 4852.0
1 TraesCS6B01G128800 chr6B 87.488 1031 111 4 1051 2081 126728808 126727796 0.000000e+00 1173.0
2 TraesCS6B01G128800 chr6B 100.000 171 0 0 1 171 124465049 124465219 1.780000e-82 316.0
3 TraesCS6B01G128800 chr6D 89.587 2084 122 30 444 2505 47267708 47265698 0.000000e+00 2558.0
4 TraesCS6B01G128800 chr6D 88.619 1028 102 4 1054 2081 56295914 56294902 0.000000e+00 1236.0
5 TraesCS6B01G128800 chr6D 93.701 127 5 1 3 129 47267846 47267723 1.450000e-43 187.0
6 TraesCS6B01G128800 chr6A 94.419 1541 70 8 552 2081 68501609 68503144 0.000000e+00 2355.0
7 TraesCS6B01G128800 chr6A 87.172 1029 117 5 1053 2081 70935448 70934435 0.000000e+00 1155.0
8 TraesCS6B01G128800 chr6A 80.032 621 87 21 2455 3068 68506673 68507263 2.830000e-115 425.0
9 TraesCS6B01G128800 chr7D 92.905 296 21 0 1287 1582 518063471 518063766 6.080000e-117 431.0
10 TraesCS6B01G128800 chr7D 79.268 82 17 0 2963 3044 2000793 2000712 1.190000e-04 58.4
11 TraesCS6B01G128800 chr4B 91.463 246 16 1 1431 1676 618338949 618339189 1.760000e-87 333.0
12 TraesCS6B01G128800 chr4B 94.444 54 3 0 1334 1387 618338903 618338956 1.960000e-12 84.2
13 TraesCS6B01G128800 chr3A 95.522 201 9 0 1600 1800 31569977 31570177 3.820000e-84 322.0
14 TraesCS6B01G128800 chr7A 94.175 206 12 0 1595 1800 729889830 729890035 6.390000e-82 315.0
15 TraesCS6B01G128800 chr7A 83.333 78 13 0 2166 2243 642249843 642249920 4.240000e-09 73.1
16 TraesCS6B01G128800 chr5A 94.118 204 12 0 1600 1803 2738986 2738783 8.260000e-81 311.0
17 TraesCS6B01G128800 chr5A 100.000 33 0 0 2398 2430 78176442 78176410 9.190000e-06 62.1
18 TraesCS6B01G128800 chr5B 94.500 200 11 0 1604 1803 591662265 591662066 2.970000e-80 309.0
19 TraesCS6B01G128800 chr2A 76.353 351 70 12 1210 1552 150488832 150488487 3.140000e-40 176.0
20 TraesCS6B01G128800 chr2D 76.301 346 67 14 1210 1546 150918891 150919230 1.460000e-38 171.0
21 TraesCS6B01G128800 chr3B 77.778 243 50 4 2827 3068 111731516 111731755 2.470000e-31 147.0
22 TraesCS6B01G128800 chr3B 86.207 58 2 4 2249 2305 143176408 143176460 1.190000e-04 58.4
23 TraesCS6B01G128800 chr4A 77.397 146 33 0 2899 3044 742587391 742587246 1.520000e-13 87.9
24 TraesCS6B01G128800 chr4A 84.416 77 12 0 2172 2248 433873662 433873586 3.280000e-10 76.8
25 TraesCS6B01G128800 chr4A 84.416 77 12 0 2172 2248 433902923 433902847 3.280000e-10 76.8
26 TraesCS6B01G128800 chr2B 78.862 123 24 2 2125 2246 684872456 684872335 7.050000e-12 82.4
27 TraesCS6B01G128800 chrUn 84.416 77 12 0 2172 2248 401283168 401283244 3.280000e-10 76.8
28 TraesCS6B01G128800 chrUn 84.416 77 12 0 2172 2248 401284692 401284768 3.280000e-10 76.8
29 TraesCS6B01G128800 chr5D 85.333 75 7 3 2170 2243 377311861 377311790 1.180000e-09 75.0
30 TraesCS6B01G128800 chr7B 97.297 37 1 0 2212 2248 87199955 87199919 2.550000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G128800 chr6B 124465049 124468116 3067 False 2584.0 4852 100.0000 1 3068 2 chr6B.!!$F1 3067
1 TraesCS6B01G128800 chr6B 126727796 126728808 1012 True 1173.0 1173 87.4880 1051 2081 1 chr6B.!!$R1 1030
2 TraesCS6B01G128800 chr6D 47265698 47267846 2148 True 1372.5 2558 91.6440 3 2505 2 chr6D.!!$R2 2502
3 TraesCS6B01G128800 chr6D 56294902 56295914 1012 True 1236.0 1236 88.6190 1054 2081 1 chr6D.!!$R1 1027
4 TraesCS6B01G128800 chr6A 68501609 68507263 5654 False 1390.0 2355 87.2255 552 3068 2 chr6A.!!$F1 2516
5 TraesCS6B01G128800 chr6A 70934435 70935448 1013 True 1155.0 1155 87.1720 1053 2081 1 chr6A.!!$R1 1028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 464 0.249405 CAGCGGAAGGAGATGAGCTC 60.249 60.0 6.82 6.82 43.17 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 2415 0.250901 AGGGGTGAGTGTTGATGTGC 60.251 55.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 4.380839 CGTAGCGGAGATGATCAAATTG 57.619 45.455 0.00 0.00 0.00 2.32
140 141 4.051237 CGTAGCGGAGATGATCAAATTGA 58.949 43.478 0.00 0.00 0.00 2.57
141 142 4.507756 CGTAGCGGAGATGATCAAATTGAA 59.492 41.667 0.00 0.00 0.00 2.69
143 144 5.902613 AGCGGAGATGATCAAATTGAAAA 57.097 34.783 0.00 0.00 0.00 2.29
144 145 5.888105 AGCGGAGATGATCAAATTGAAAAG 58.112 37.500 0.00 0.00 0.00 2.27
145 146 5.416952 AGCGGAGATGATCAAATTGAAAAGT 59.583 36.000 0.00 0.00 0.00 2.66
146 147 6.599244 AGCGGAGATGATCAAATTGAAAAGTA 59.401 34.615 0.00 0.00 0.00 2.24
147 148 7.121168 AGCGGAGATGATCAAATTGAAAAGTAA 59.879 33.333 0.00 0.00 0.00 2.24
148 149 7.754924 GCGGAGATGATCAAATTGAAAAGTAAA 59.245 33.333 0.00 0.00 0.00 2.01
149 150 9.282247 CGGAGATGATCAAATTGAAAAGTAAAG 57.718 33.333 0.00 0.00 0.00 1.85
154 155 8.870160 TGATCAAATTGAAAAGTAAAGTGTGG 57.130 30.769 0.00 0.00 0.00 4.17
155 156 7.437862 TGATCAAATTGAAAAGTAAAGTGTGGC 59.562 33.333 0.00 0.00 0.00 5.01
156 157 6.634805 TCAAATTGAAAAGTAAAGTGTGGCA 58.365 32.000 0.00 0.00 0.00 4.92
157 158 7.099764 TCAAATTGAAAAGTAAAGTGTGGCAA 58.900 30.769 0.00 0.00 0.00 4.52
158 159 7.604164 TCAAATTGAAAAGTAAAGTGTGGCAAA 59.396 29.630 0.00 0.00 0.00 3.68
159 160 8.397148 CAAATTGAAAAGTAAAGTGTGGCAAAT 58.603 29.630 0.00 0.00 0.00 2.32
160 161 7.713764 ATTGAAAAGTAAAGTGTGGCAAATC 57.286 32.000 0.00 0.00 0.00 2.17
161 162 6.214191 TGAAAAGTAAAGTGTGGCAAATCA 57.786 33.333 0.00 0.00 0.00 2.57
162 163 6.815089 TGAAAAGTAAAGTGTGGCAAATCAT 58.185 32.000 0.00 0.00 0.00 2.45
163 164 6.922957 TGAAAAGTAAAGTGTGGCAAATCATC 59.077 34.615 0.00 0.00 0.00 2.92
164 165 6.655078 AAAGTAAAGTGTGGCAAATCATCT 57.345 33.333 0.00 0.00 0.00 2.90
165 166 7.759489 AAAGTAAAGTGTGGCAAATCATCTA 57.241 32.000 0.00 0.00 0.00 1.98
166 167 7.759489 AAGTAAAGTGTGGCAAATCATCTAA 57.241 32.000 0.00 0.00 0.00 2.10
167 168 7.944729 AGTAAAGTGTGGCAAATCATCTAAT 57.055 32.000 0.00 0.00 0.00 1.73
168 169 8.353423 AGTAAAGTGTGGCAAATCATCTAATT 57.647 30.769 0.00 0.00 0.00 1.40
169 170 9.461312 AGTAAAGTGTGGCAAATCATCTAATTA 57.539 29.630 0.00 0.00 0.00 1.40
463 464 0.249405 CAGCGGAAGGAGATGAGCTC 60.249 60.000 6.82 6.82 43.17 4.09
471 472 0.813210 GGAGATGAGCTCAAAGCCGG 60.813 60.000 22.50 0.00 45.81 6.13
498 499 0.455005 AACGAGAAGTAGGGCGCTAC 59.545 55.000 28.41 28.41 0.00 3.58
536 537 0.739462 CGGCGGTCATGCTCAAAGTA 60.739 55.000 0.00 0.00 34.52 2.24
537 538 1.668419 GGCGGTCATGCTCAAAGTAT 58.332 50.000 0.00 0.00 34.52 2.12
548 549 4.253685 TGCTCAAAGTATTTTCTCCCTCG 58.746 43.478 0.00 0.00 35.03 4.63
549 550 3.623510 GCTCAAAGTATTTTCTCCCTCGG 59.376 47.826 0.00 0.00 35.03 4.63
550 551 4.623171 GCTCAAAGTATTTTCTCCCTCGGA 60.623 45.833 0.00 0.00 35.03 4.55
551 552 4.828829 TCAAAGTATTTTCTCCCTCGGAC 58.171 43.478 0.00 0.00 35.03 4.79
552 553 3.908643 AAGTATTTTCTCCCTCGGACC 57.091 47.619 0.00 0.00 0.00 4.46
553 554 3.117552 AGTATTTTCTCCCTCGGACCT 57.882 47.619 0.00 0.00 0.00 3.85
554 555 3.032459 AGTATTTTCTCCCTCGGACCTC 58.968 50.000 0.00 0.00 0.00 3.85
555 556 0.824759 ATTTTCTCCCTCGGACCTCG 59.175 55.000 0.00 0.00 40.90 4.63
573 574 2.109593 GTGGTCCGGTTTCCACGT 59.890 61.111 22.34 0.00 43.34 4.49
597 598 3.941483 GGTGTGGTAGGATCACATTCTTG 59.059 47.826 0.00 0.00 45.32 3.02
601 606 3.202818 TGGTAGGATCACATTCTTGGCAT 59.797 43.478 0.00 0.00 0.00 4.40
602 607 3.817647 GGTAGGATCACATTCTTGGCATC 59.182 47.826 0.00 0.00 0.00 3.91
605 610 2.360165 GGATCACATTCTTGGCATCCAC 59.640 50.000 0.00 0.00 36.15 4.02
614 619 1.399440 CTTGGCATCCACGATTCACAG 59.601 52.381 0.00 0.00 30.78 3.66
756 764 3.612423 TCTTAATTCGCTGACGTGATGTG 59.388 43.478 0.00 0.00 41.18 3.21
780 788 7.441458 GTGAACCATAGGCAATTAAGTAGTAGG 59.559 40.741 0.00 0.00 0.00 3.18
781 789 7.346175 TGAACCATAGGCAATTAAGTAGTAGGA 59.654 37.037 0.00 0.00 0.00 2.94
803 811 4.235360 ACGAAGAGTACAATGAGAAACCG 58.765 43.478 0.00 0.00 0.00 4.44
901 910 3.276857 TCTGATCTCAGCCAAAATGCTC 58.723 45.455 2.21 0.00 43.46 4.26
941 952 1.267261 AGCAGATATCCACGAGTACGC 59.733 52.381 0.00 0.00 43.96 4.42
975 986 0.319040 CTCCCAGTCACACTCACACG 60.319 60.000 0.00 0.00 0.00 4.49
1064 1080 2.158711 TGCCCAATCTCAAGCTCCATAG 60.159 50.000 0.00 0.00 0.00 2.23
1299 1318 4.615834 CGCTACTCGCTCCTCGCC 62.616 72.222 0.00 0.00 38.27 5.54
1862 1881 3.991051 CGTGCTGGACGTGACCCT 61.991 66.667 13.79 0.00 43.50 4.34
1900 1919 1.536662 AAGACGGCAGGGAAGGACT 60.537 57.895 0.00 0.00 0.00 3.85
1905 1924 2.361737 GCAGGGAAGGACTTGGCC 60.362 66.667 0.00 0.00 0.00 5.36
2096 2268 9.723601 AATTAGTGCAAAATTATCACAATGGTT 57.276 25.926 6.51 0.00 33.44 3.67
2097 2269 8.531622 TTAGTGCAAAATTATCACAATGGTTG 57.468 30.769 0.00 0.00 33.44 3.77
2125 2300 0.892358 ATGCTTGTGCCACTGTCCAG 60.892 55.000 0.00 0.00 38.71 3.86
2130 2305 1.388547 TGTGCCACTGTCCAGTTTTC 58.611 50.000 0.00 0.00 40.20 2.29
2133 2308 2.427095 GTGCCACTGTCCAGTTTTCTTT 59.573 45.455 0.00 0.00 40.20 2.52
2134 2309 2.426738 TGCCACTGTCCAGTTTTCTTTG 59.573 45.455 0.00 0.00 40.20 2.77
2153 2328 2.337583 TGAACACAGCACTATCGAAGC 58.662 47.619 0.00 0.00 0.00 3.86
2161 2336 0.866061 CACTATCGAAGCCGGTCACG 60.866 60.000 1.90 6.64 40.55 4.35
2207 2382 0.810031 AACACACGCACTCACACTCC 60.810 55.000 0.00 0.00 0.00 3.85
2219 2394 2.036992 CTCACACTCCATCCCTATGAGC 59.963 54.545 0.00 0.00 34.84 4.26
2221 2396 2.371179 CACACTCCATCCCTATGAGCAT 59.629 50.000 0.00 0.00 34.84 3.79
2224 2399 3.327172 CACTCCATCCCTATGAGCATCTT 59.673 47.826 0.00 0.00 34.84 2.40
2225 2400 3.979347 ACTCCATCCCTATGAGCATCTTT 59.021 43.478 0.00 0.00 34.84 2.52
2237 2412 3.831333 TGAGCATCTTTGAGAGACTGAGT 59.169 43.478 0.00 0.00 37.17 3.41
2240 2415 3.768406 CATCTTTGAGAGACTGAGTCGG 58.232 50.000 6.99 0.00 37.17 4.79
2291 5393 3.568430 CGCACTCACACACTATCCCTATA 59.432 47.826 0.00 0.00 0.00 1.31
2300 5402 4.021016 CACACTATCCCTATAAGCACCTCC 60.021 50.000 0.00 0.00 0.00 4.30
2305 5407 2.110188 TCCCTATAAGCACCTCCGAGAT 59.890 50.000 0.00 0.00 0.00 2.75
2309 5413 4.039245 CCTATAAGCACCTCCGAGATTGAA 59.961 45.833 0.00 0.00 0.00 2.69
2327 5431 6.430925 AGATTGAACCGACATTTCATCTTGAA 59.569 34.615 0.00 0.00 33.03 2.69
2352 5456 3.187700 GACGAATTTGTCATAGACGCCT 58.812 45.455 19.20 0.00 38.75 5.52
2382 5486 2.376109 GACGAATGTCTCCTCCCACTA 58.624 52.381 0.00 0.00 42.08 2.74
2442 5552 4.568359 CGAACACCAATATTGAGTCTGGAG 59.432 45.833 17.23 1.04 32.97 3.86
2453 5563 2.423892 TGAGTCTGGAGCGTGAAGTATC 59.576 50.000 0.00 0.00 0.00 2.24
2462 5714 4.446051 GGAGCGTGAAGTATCTCATTAAGC 59.554 45.833 0.00 0.00 0.00 3.09
2464 5716 5.285651 AGCGTGAAGTATCTCATTAAGCTC 58.714 41.667 0.00 0.00 0.00 4.09
2467 5719 6.146216 CGTGAAGTATCTCATTAAGCTCGAT 58.854 40.000 0.00 0.00 0.00 3.59
2506 5761 1.683943 CATGTTTGGATCGATGCCCT 58.316 50.000 14.82 0.00 0.00 5.19
2528 5784 1.345415 AGATGCCCTGCCAAAAAGTTG 59.655 47.619 0.00 0.00 34.25 3.16
2529 5785 1.344114 GATGCCCTGCCAAAAAGTTGA 59.656 47.619 0.00 0.00 36.83 3.18
2530 5786 1.422531 TGCCCTGCCAAAAAGTTGAT 58.577 45.000 0.00 0.00 36.83 2.57
2532 5788 1.070601 GCCCTGCCAAAAAGTTGATGT 59.929 47.619 0.00 0.00 36.83 3.06
2540 5796 4.680440 GCCAAAAAGTTGATGTTGACCTGT 60.680 41.667 0.00 0.00 36.83 4.00
2542 5798 4.918810 AAAAGTTGATGTTGACCTGTCC 57.081 40.909 0.00 0.00 0.00 4.02
2544 5800 3.576078 AGTTGATGTTGACCTGTCCAA 57.424 42.857 0.00 0.00 0.00 3.53
2595 5851 2.124695 GCGCCCAACCCTTCCTAG 60.125 66.667 0.00 0.00 0.00 3.02
2604 5860 3.561313 CCAACCCTTCCTAGCTTTGCTAA 60.561 47.826 0.00 0.00 40.82 3.09
2605 5861 4.273318 CAACCCTTCCTAGCTTTGCTAAT 58.727 43.478 0.00 0.00 40.82 1.73
2609 5865 4.578105 CCCTTCCTAGCTTTGCTAATTCAG 59.422 45.833 0.00 0.00 40.82 3.02
2615 5871 6.886459 TCCTAGCTTTGCTAATTCAGTTTCAT 59.114 34.615 0.00 0.00 40.82 2.57
2627 5883 6.790285 ATTCAGTTTCATGCCAATGTTTTC 57.210 33.333 0.00 0.00 35.15 2.29
2630 5886 2.077413 TTCATGCCAATGTTTTCGCC 57.923 45.000 0.00 0.00 35.15 5.54
2633 5889 1.067706 CATGCCAATGTTTTCGCCAGA 60.068 47.619 0.00 0.00 0.00 3.86
2685 5942 2.978010 GTGTCCGTGGTTGGCAGG 60.978 66.667 0.00 0.00 0.00 4.85
2704 5961 1.800681 GCCAACACAGGCGTAATCC 59.199 57.895 0.00 0.00 46.12 3.01
2755 6012 1.995626 CCCAGGGTCGATTGAGGGT 60.996 63.158 0.00 0.00 0.00 4.34
2759 6016 1.762957 CAGGGTCGATTGAGGGTGTAT 59.237 52.381 0.00 0.00 0.00 2.29
2762 6019 1.583054 GTCGATTGAGGGTGTATGCC 58.417 55.000 0.00 0.00 0.00 4.40
2765 6022 1.138859 CGATTGAGGGTGTATGCCTCA 59.861 52.381 0.00 0.00 38.59 3.86
2768 6025 3.281727 TTGAGGGTGTATGCCTCATTC 57.718 47.619 0.00 0.00 39.79 2.67
2769 6026 1.490490 TGAGGGTGTATGCCTCATTCC 59.510 52.381 0.00 0.00 35.93 3.01
2771 6028 0.178990 GGGTGTATGCCTCATTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
2777 6034 2.925966 ATGCCTCATTCCCCAAGAAA 57.074 45.000 0.00 0.00 38.21 2.52
2778 6035 2.692709 TGCCTCATTCCCCAAGAAAA 57.307 45.000 0.00 0.00 38.21 2.29
2779 6036 2.528564 TGCCTCATTCCCCAAGAAAAG 58.471 47.619 0.00 0.00 38.21 2.27
2780 6037 1.827344 GCCTCATTCCCCAAGAAAAGG 59.173 52.381 0.00 0.00 41.34 3.11
2781 6038 1.827344 CCTCATTCCCCAAGAAAAGGC 59.173 52.381 0.00 0.00 38.21 4.35
2782 6039 2.558350 CCTCATTCCCCAAGAAAAGGCT 60.558 50.000 0.00 0.00 38.21 4.58
2783 6040 3.309121 CCTCATTCCCCAAGAAAAGGCTA 60.309 47.826 0.00 0.00 38.21 3.93
2784 6041 3.950395 CTCATTCCCCAAGAAAAGGCTAG 59.050 47.826 0.00 0.00 38.21 3.42
2785 6042 2.899303 TTCCCCAAGAAAAGGCTAGG 57.101 50.000 0.00 0.00 0.00 3.02
2786 6043 1.755200 TCCCCAAGAAAAGGCTAGGT 58.245 50.000 0.00 0.00 0.00 3.08
2787 6044 2.070573 TCCCCAAGAAAAGGCTAGGTT 58.929 47.619 0.00 0.00 0.00 3.50
2788 6045 2.449345 TCCCCAAGAAAAGGCTAGGTTT 59.551 45.455 0.00 0.00 0.00 3.27
2791 6048 3.759086 CCCAAGAAAAGGCTAGGTTTCTC 59.241 47.826 11.88 0.00 41.98 2.87
2796 6053 4.595350 AGAAAAGGCTAGGTTTCTCTGTCT 59.405 41.667 6.81 0.00 39.34 3.41
2803 6060 1.671742 GTTTCTCTGTCTCCCGCCA 59.328 57.895 0.00 0.00 0.00 5.69
2829 6086 4.440127 GCCGGTCCGCCTCGTTAA 62.440 66.667 5.50 0.00 0.00 2.01
2851 6108 1.809619 CATGACGACGCGGTGGATT 60.810 57.895 12.47 0.00 0.00 3.01
2853 6110 1.082117 ATGACGACGCGGTGGATTTC 61.082 55.000 12.47 0.00 0.00 2.17
2854 6111 1.735198 GACGACGCGGTGGATTTCA 60.735 57.895 12.47 0.00 0.00 2.69
2861 6118 0.109132 GCGGTGGATTTCAGCCTTTG 60.109 55.000 0.00 0.00 40.54 2.77
2863 6120 0.247460 GGTGGATTTCAGCCTTTGCC 59.753 55.000 0.00 0.00 37.88 4.52
2865 6122 0.251121 TGGATTTCAGCCTTTGCCGA 60.251 50.000 0.00 0.00 38.69 5.54
2866 6123 0.887933 GGATTTCAGCCTTTGCCGAA 59.112 50.000 0.00 0.00 38.69 4.30
2868 6125 0.244721 ATTTCAGCCTTTGCCGAAGC 59.755 50.000 0.00 0.00 35.43 3.86
2891 6148 2.168728 AGGGCTCCGTCTTTAGATGTTC 59.831 50.000 0.00 0.00 0.00 3.18
2892 6149 2.552031 GGCTCCGTCTTTAGATGTTCC 58.448 52.381 0.00 0.00 0.00 3.62
2897 6154 6.049790 GCTCCGTCTTTAGATGTTCCTTTAT 58.950 40.000 0.00 0.00 0.00 1.40
2903 6160 9.329913 CGTCTTTAGATGTTCCTTTATGTTTTG 57.670 33.333 0.00 0.00 0.00 2.44
2911 6168 9.758651 GATGTTCCTTTATGTTTTGTTAAGGTT 57.241 29.630 0.00 0.00 37.29 3.50
2914 6171 9.373603 GTTCCTTTATGTTTTGTTAAGGTTTGT 57.626 29.630 0.00 0.00 37.29 2.83
2916 6173 8.532819 TCCTTTATGTTTTGTTAAGGTTTGTGT 58.467 29.630 0.00 0.00 37.29 3.72
2918 6175 8.705048 TTTATGTTTTGTTAAGGTTTGTGTCC 57.295 30.769 0.00 0.00 0.00 4.02
2919 6176 5.986501 TGTTTTGTTAAGGTTTGTGTCCT 57.013 34.783 0.00 0.00 36.81 3.85
2920 6177 7.648039 ATGTTTTGTTAAGGTTTGTGTCCTA 57.352 32.000 0.00 0.00 34.56 2.94
2921 6178 6.854778 TGTTTTGTTAAGGTTTGTGTCCTAC 58.145 36.000 0.00 0.00 34.56 3.18
2922 6179 6.660094 TGTTTTGTTAAGGTTTGTGTCCTACT 59.340 34.615 0.00 0.00 34.56 2.57
2924 6181 5.617528 TGTTAAGGTTTGTGTCCTACTCA 57.382 39.130 0.00 0.00 34.56 3.41
2925 6182 5.991861 TGTTAAGGTTTGTGTCCTACTCAA 58.008 37.500 0.00 0.00 34.56 3.02
2926 6183 6.053005 TGTTAAGGTTTGTGTCCTACTCAAG 58.947 40.000 0.00 0.00 33.80 3.02
2930 6187 4.039366 AGGTTTGTGTCCTACTCAAGAGAC 59.961 45.833 3.73 0.00 33.80 3.36
2931 6188 4.202223 GGTTTGTGTCCTACTCAAGAGACA 60.202 45.833 3.73 0.00 33.80 3.41
2933 6190 4.855715 TGTGTCCTACTCAAGAGACAAG 57.144 45.455 3.73 0.00 37.24 3.16
2934 6191 4.470602 TGTGTCCTACTCAAGAGACAAGA 58.529 43.478 3.73 0.00 37.24 3.02
2935 6192 4.278669 TGTGTCCTACTCAAGAGACAAGAC 59.721 45.833 3.73 5.89 37.24 3.01
2936 6193 3.502595 TGTCCTACTCAAGAGACAAGACG 59.497 47.826 3.73 0.00 34.47 4.18
2937 6194 3.752222 GTCCTACTCAAGAGACAAGACGA 59.248 47.826 3.73 0.00 0.00 4.20
2938 6195 3.752222 TCCTACTCAAGAGACAAGACGAC 59.248 47.826 3.73 0.00 0.00 4.34
2939 6196 3.754323 CCTACTCAAGAGACAAGACGACT 59.246 47.826 3.73 0.00 0.00 4.18
2940 6197 3.634568 ACTCAAGAGACAAGACGACTG 57.365 47.619 3.73 0.00 0.00 3.51
2941 6198 2.287909 ACTCAAGAGACAAGACGACTGC 60.288 50.000 3.73 0.00 0.00 4.40
2942 6199 1.056103 CAAGAGACAAGACGACTGCG 58.944 55.000 0.00 0.00 44.79 5.18
2943 6200 0.039074 AAGAGACAAGACGACTGCGG 60.039 55.000 0.00 0.00 43.17 5.69
2950 6207 4.803426 GACGACTGCGGCTCCCTG 62.803 72.222 0.00 0.00 43.91 4.45
2952 6209 4.069232 CGACTGCGGCTCCCTGAA 62.069 66.667 0.00 0.00 0.00 3.02
2953 6210 2.125350 GACTGCGGCTCCCTGAAG 60.125 66.667 0.00 0.00 0.00 3.02
2954 6211 2.604686 ACTGCGGCTCCCTGAAGA 60.605 61.111 0.00 0.00 0.00 2.87
2955 6212 1.965754 GACTGCGGCTCCCTGAAGAT 61.966 60.000 0.00 0.00 0.00 2.40
2956 6213 1.523258 CTGCGGCTCCCTGAAGATG 60.523 63.158 0.00 0.00 0.00 2.90
2957 6214 2.203126 GCGGCTCCCTGAAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
2958 6215 2.735772 GCGGCTCCCTGAAGATGGA 61.736 63.158 0.00 0.00 0.00 3.41
2959 6216 1.144936 CGGCTCCCTGAAGATGGAC 59.855 63.158 0.00 0.00 0.00 4.02
2960 6217 1.529309 GGCTCCCTGAAGATGGACC 59.471 63.158 0.00 0.00 0.00 4.46
2972 6229 1.636003 AGATGGACCAAGGTTCTTCCC 59.364 52.381 0.00 0.00 36.75 3.97
2973 6230 0.328258 ATGGACCAAGGTTCTTCCCG 59.672 55.000 0.00 0.00 36.75 5.14
2983 6240 0.822811 GTTCTTCCCGTCTAGTCCCC 59.177 60.000 0.00 0.00 0.00 4.81
2986 6243 1.379044 TTCCCGTCTAGTCCCCGTC 60.379 63.158 0.00 0.00 0.00 4.79
2987 6244 2.832201 CCCGTCTAGTCCCCGTCC 60.832 72.222 0.00 0.00 0.00 4.79
2989 6246 3.207669 CGTCTAGTCCCCGTCCCG 61.208 72.222 0.00 0.00 0.00 5.14
2992 6249 2.000701 TCTAGTCCCCGTCCCGGTA 61.001 63.158 0.00 0.00 46.80 4.02
2994 6251 1.379843 TAGTCCCCGTCCCGGTAAC 60.380 63.158 0.00 0.00 46.80 2.50
3031 6288 1.817941 GTGCGTGTGGAGGTGTGTT 60.818 57.895 0.00 0.00 0.00 3.32
3036 6293 1.308998 GTGTGGAGGTGTGTTTCTGG 58.691 55.000 0.00 0.00 0.00 3.86
3044 6301 0.798776 GTGTGTTTCTGGCGGATCTG 59.201 55.000 0.00 0.00 0.00 2.90
3054 6311 1.026718 GGCGGATCTGTTCTTGGTGG 61.027 60.000 2.89 0.00 0.00 4.61
3058 6315 2.939103 CGGATCTGTTCTTGGTGGATTC 59.061 50.000 0.00 0.00 0.00 2.52
3061 6318 1.071542 TCTGTTCTTGGTGGATTCGCA 59.928 47.619 0.00 0.00 0.00 5.10
3062 6319 2.086869 CTGTTCTTGGTGGATTCGCAT 58.913 47.619 0.00 0.00 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.639298 CGTAGCTGCCTTGTGCTTCC 61.639 60.000 0.00 0.00 42.00 3.46
40 41 4.831307 AGTTCTCGCGCGCCGTAG 62.831 66.667 27.95 20.15 38.35 3.51
88 89 1.003233 GGTTCCCGTCTGTCAGGAAAT 59.997 52.381 0.00 0.00 41.21 2.17
118 119 4.051237 TCAATTTGATCATCTCCGCTACG 58.949 43.478 0.00 0.00 0.00 3.51
119 120 5.991328 TTCAATTTGATCATCTCCGCTAC 57.009 39.130 0.00 0.00 0.00 3.58
129 130 7.437862 GCCACACTTTACTTTTCAATTTGATCA 59.562 33.333 0.00 0.00 0.00 2.92
131 132 7.271511 TGCCACACTTTACTTTTCAATTTGAT 58.728 30.769 0.00 0.00 0.00 2.57
132 133 6.634805 TGCCACACTTTACTTTTCAATTTGA 58.365 32.000 0.00 0.00 0.00 2.69
133 134 6.900568 TGCCACACTTTACTTTTCAATTTG 57.099 33.333 0.00 0.00 0.00 2.32
134 135 7.913674 TTTGCCACACTTTACTTTTCAATTT 57.086 28.000 0.00 0.00 0.00 1.82
135 136 7.768120 TGATTTGCCACACTTTACTTTTCAATT 59.232 29.630 0.00 0.00 0.00 2.32
136 137 7.271511 TGATTTGCCACACTTTACTTTTCAAT 58.728 30.769 0.00 0.00 0.00 2.57
137 138 6.634805 TGATTTGCCACACTTTACTTTTCAA 58.365 32.000 0.00 0.00 0.00 2.69
138 139 6.214191 TGATTTGCCACACTTTACTTTTCA 57.786 33.333 0.00 0.00 0.00 2.69
139 140 7.147976 AGATGATTTGCCACACTTTACTTTTC 58.852 34.615 0.00 0.00 0.00 2.29
140 141 7.054491 AGATGATTTGCCACACTTTACTTTT 57.946 32.000 0.00 0.00 0.00 2.27
141 142 6.655078 AGATGATTTGCCACACTTTACTTT 57.345 33.333 0.00 0.00 0.00 2.66
143 144 7.944729 ATTAGATGATTTGCCACACTTTACT 57.055 32.000 0.00 0.00 0.00 2.24
441 442 1.110442 CTCATCTCCTTCCGCTGAGT 58.890 55.000 0.00 0.00 30.98 3.41
442 443 0.249405 GCTCATCTCCTTCCGCTGAG 60.249 60.000 0.00 0.00 37.10 3.35
447 448 2.548875 CTTTGAGCTCATCTCCTTCCG 58.451 52.381 19.04 0.00 41.18 4.30
454 455 1.451028 GCCGGCTTTGAGCTCATCT 60.451 57.895 22.15 0.00 41.99 2.90
474 475 1.153628 CCCTACTTCTCGTTGCCGG 60.154 63.158 0.00 0.00 33.95 6.13
519 520 3.764885 AAATACTTTGAGCATGACCGC 57.235 42.857 0.00 0.00 0.00 5.68
520 521 5.447818 GGAGAAAATACTTTGAGCATGACCG 60.448 44.000 0.00 0.00 0.00 4.79
532 533 3.451540 GAGGTCCGAGGGAGAAAATACTT 59.548 47.826 0.00 0.00 29.39 2.24
536 537 0.824759 CGAGGTCCGAGGGAGAAAAT 59.175 55.000 0.00 0.00 41.76 1.82
537 538 1.255667 CCGAGGTCCGAGGGAGAAAA 61.256 60.000 0.00 0.00 41.76 2.29
573 574 4.620723 AGAATGTGATCCTACCACACCTA 58.379 43.478 0.00 0.00 45.87 3.08
597 598 1.869767 GATCTGTGAATCGTGGATGCC 59.130 52.381 0.00 0.00 0.00 4.40
601 606 4.442052 GGAATCTGATCTGTGAATCGTGGA 60.442 45.833 0.00 0.00 0.00 4.02
602 607 3.806521 GGAATCTGATCTGTGAATCGTGG 59.193 47.826 0.00 0.00 0.00 4.94
605 610 3.055591 CCGGAATCTGATCTGTGAATCG 58.944 50.000 0.00 0.00 0.00 3.34
614 619 0.032267 GGGACGTCCGGAATCTGATC 59.968 60.000 27.68 6.46 36.71 2.92
666 671 1.349026 CAGTCCTGGAACCATGTGACT 59.651 52.381 0.00 12.03 32.93 3.41
756 764 7.656542 GTCCTACTACTTAATTGCCTATGGTTC 59.343 40.741 0.00 0.00 0.00 3.62
780 788 4.323868 CGGTTTCTCATTGTACTCTTCGTC 59.676 45.833 0.00 0.00 0.00 4.20
781 789 4.235360 CGGTTTCTCATTGTACTCTTCGT 58.765 43.478 0.00 0.00 0.00 3.85
803 811 7.522374 GTTTCTTCCTCACTCATGATTTGTAC 58.478 38.462 0.00 0.00 33.22 2.90
927 938 1.878088 GAGGATGCGTACTCGTGGATA 59.122 52.381 1.41 0.00 39.49 2.59
941 952 4.247380 GAGCCGGGGCAGAGGATG 62.247 72.222 12.97 0.00 44.88 3.51
959 970 1.227234 TGCGTGTGAGTGTGACTGG 60.227 57.895 0.00 0.00 0.00 4.00
961 972 1.588932 CGTGCGTGTGAGTGTGACT 60.589 57.895 0.00 0.00 0.00 3.41
1064 1080 0.603569 TGAAGTGCTTCTCGGAGGAC 59.396 55.000 12.44 0.00 40.14 3.85
1425 1444 2.124768 TCCATGCAGGGGAGGTCA 59.875 61.111 18.94 0.00 38.24 4.02
1689 1708 1.218047 GATGTACTCCAGCGTGGCA 59.782 57.895 0.00 0.00 37.47 4.92
1860 1879 3.753434 AGCTGCTCGGACGTGAGG 61.753 66.667 0.00 0.00 36.47 3.86
1862 1881 4.056125 CCAGCTGCTCGGACGTGA 62.056 66.667 8.66 0.00 0.00 4.35
1905 1924 2.025418 GTACGTGGCCTTGTCGGTG 61.025 63.158 3.32 0.00 34.25 4.94
2020 2039 2.125753 GAGGTGACGCAGAGGCTG 60.126 66.667 0.00 0.00 38.10 4.85
2125 2300 5.621228 CGATAGTGCTGTGTTCAAAGAAAAC 59.379 40.000 0.00 0.00 0.00 2.43
2130 2305 4.667668 GCTTCGATAGTGCTGTGTTCAAAG 60.668 45.833 0.00 0.00 34.84 2.77
2133 2308 2.337583 GCTTCGATAGTGCTGTGTTCA 58.662 47.619 0.00 0.00 34.84 3.18
2134 2309 1.661112 GGCTTCGATAGTGCTGTGTTC 59.339 52.381 0.00 0.00 37.00 3.18
2153 2328 0.729116 ATACTCGTGTACGTGACCGG 59.271 55.000 12.65 0.00 40.80 5.28
2180 2355 4.151070 GTGAGTGCGTGTGTTCATAAATG 58.849 43.478 0.00 0.00 0.00 2.32
2181 2356 3.812609 TGTGAGTGCGTGTGTTCATAAAT 59.187 39.130 0.00 0.00 0.00 1.40
2182 2357 3.001838 GTGTGAGTGCGTGTGTTCATAAA 59.998 43.478 0.00 0.00 0.00 1.40
2185 2360 0.937304 GTGTGAGTGCGTGTGTTCAT 59.063 50.000 0.00 0.00 0.00 2.57
2191 2366 0.319900 GATGGAGTGTGAGTGCGTGT 60.320 55.000 0.00 0.00 0.00 4.49
2207 2382 5.011840 TCTCTCAAAGATGCTCATAGGGATG 59.988 44.000 0.00 0.00 0.00 3.51
2219 2394 3.768406 CCGACTCAGTCTCTCAAAGATG 58.232 50.000 2.61 0.00 36.11 2.90
2221 2396 1.542030 GCCGACTCAGTCTCTCAAAGA 59.458 52.381 2.61 0.00 0.00 2.52
2224 2399 0.598562 GTGCCGACTCAGTCTCTCAA 59.401 55.000 2.61 0.00 0.00 3.02
2225 2400 0.537371 TGTGCCGACTCAGTCTCTCA 60.537 55.000 2.61 0.00 0.00 3.27
2237 2412 0.602638 GGTGAGTGTTGATGTGCCGA 60.603 55.000 0.00 0.00 0.00 5.54
2240 2415 0.250901 AGGGGTGAGTGTTGATGTGC 60.251 55.000 0.00 0.00 0.00 4.57
2291 5393 1.339151 GGTTCAATCTCGGAGGTGCTT 60.339 52.381 4.96 0.00 0.00 3.91
2300 5402 4.568359 AGATGAAATGTCGGTTCAATCTCG 59.432 41.667 0.00 0.00 38.44 4.04
2305 5407 6.384258 TTTCAAGATGAAATGTCGGTTCAA 57.616 33.333 1.57 0.00 41.02 2.69
2337 5441 6.019075 CGATTATGAAAGGCGTCTATGACAAA 60.019 38.462 0.00 0.00 32.09 2.83
2344 5448 3.313249 TCGTCGATTATGAAAGGCGTCTA 59.687 43.478 0.00 0.00 0.00 2.59
2382 5486 9.167311 GATTTATTTCAGTCCTTCTGTGTGTAT 57.833 33.333 0.00 0.00 43.97 2.29
2428 5538 3.449018 ACTTCACGCTCCAGACTCAATAT 59.551 43.478 0.00 0.00 0.00 1.28
2430 5540 1.620819 ACTTCACGCTCCAGACTCAAT 59.379 47.619 0.00 0.00 0.00 2.57
2432 5542 1.905637 TACTTCACGCTCCAGACTCA 58.094 50.000 0.00 0.00 0.00 3.41
2434 5544 2.685897 GAGATACTTCACGCTCCAGACT 59.314 50.000 0.00 0.00 0.00 3.24
2442 5552 4.147306 CGAGCTTAATGAGATACTTCACGC 59.853 45.833 0.00 0.00 0.00 5.34
2453 5563 9.643652 GTTAAAGATTTGATCGAGCTTAATGAG 57.356 33.333 0.90 0.00 0.00 2.90
2462 5714 7.065803 TGCCCTTAAGTTAAAGATTTGATCGAG 59.934 37.037 0.97 0.00 0.00 4.04
2464 5716 7.083875 TGCCCTTAAGTTAAAGATTTGATCG 57.916 36.000 0.97 0.00 0.00 3.69
2467 5719 7.775053 ACATGCCCTTAAGTTAAAGATTTGA 57.225 32.000 0.97 0.00 0.00 2.69
2506 5761 1.259609 CTTTTTGGCAGGGCATCTCA 58.740 50.000 0.00 0.00 0.00 3.27
2528 5784 0.517316 GCGTTGGACAGGTCAACATC 59.483 55.000 1.41 0.00 43.18 3.06
2529 5785 1.227999 CGCGTTGGACAGGTCAACAT 61.228 55.000 0.00 0.00 43.18 2.71
2530 5786 1.885388 CGCGTTGGACAGGTCAACA 60.885 57.895 0.00 0.00 43.18 3.33
2532 5788 1.300620 CTCGCGTTGGACAGGTCAA 60.301 57.895 5.77 0.00 0.00 3.18
2577 5833 2.931105 TAGGAAGGGTTGGGCGCA 60.931 61.111 10.83 0.00 0.00 6.09
2578 5834 2.124695 CTAGGAAGGGTTGGGCGC 60.125 66.667 0.00 0.00 0.00 6.53
2585 5841 4.018415 TGAATTAGCAAAGCTAGGAAGGGT 60.018 41.667 0.00 0.00 42.34 4.34
2586 5842 4.526970 TGAATTAGCAAAGCTAGGAAGGG 58.473 43.478 0.00 0.00 42.34 3.95
2595 5851 4.328169 GGCATGAAACTGAATTAGCAAAGC 59.672 41.667 0.00 0.00 0.00 3.51
2604 5860 5.406175 CGAAAACATTGGCATGAAACTGAAT 59.594 36.000 0.00 0.00 34.11 2.57
2605 5861 4.744137 CGAAAACATTGGCATGAAACTGAA 59.256 37.500 0.00 0.00 34.11 3.02
2609 5865 2.157474 GGCGAAAACATTGGCATGAAAC 59.843 45.455 0.00 0.00 37.91 2.78
2615 5871 1.067706 CATCTGGCGAAAACATTGGCA 60.068 47.619 0.00 0.00 45.25 4.92
2630 5886 2.384391 GATTTCGCCGCCTGCATCTG 62.384 60.000 0.00 0.00 41.33 2.90
2633 5889 3.576356 CGATTTCGCCGCCTGCAT 61.576 61.111 0.00 0.00 41.33 3.96
2668 5925 2.978010 CCTGCCAACCACGGACAC 60.978 66.667 0.00 0.00 0.00 3.67
2669 5926 4.263572 CCCTGCCAACCACGGACA 62.264 66.667 0.00 0.00 0.00 4.02
2695 5952 0.733150 GAGGCTGTTTGGATTACGCC 59.267 55.000 0.00 0.00 36.28 5.68
2698 5955 4.518249 AGCTTAGAGGCTGTTTGGATTAC 58.482 43.478 0.00 0.00 41.43 1.89
2704 5961 3.608316 AGAGAGCTTAGAGGCTGTTTG 57.392 47.619 0.00 0.00 43.20 2.93
2736 5993 1.689233 CCCTCAATCGACCCTGGGA 60.689 63.158 22.23 0.00 36.90 4.37
2739 5996 1.191535 TACACCCTCAATCGACCCTG 58.808 55.000 0.00 0.00 0.00 4.45
2755 6012 2.204463 TCTTGGGGAATGAGGCATACA 58.796 47.619 0.00 0.00 0.00 2.29
2759 6016 2.528564 CTTTTCTTGGGGAATGAGGCA 58.471 47.619 0.00 0.00 33.53 4.75
2762 6019 2.812658 AGCCTTTTCTTGGGGAATGAG 58.187 47.619 0.00 0.00 33.53 2.90
2765 6022 2.654896 ACCTAGCCTTTTCTTGGGGAAT 59.345 45.455 0.00 0.00 34.03 3.01
2768 6025 2.604912 AACCTAGCCTTTTCTTGGGG 57.395 50.000 0.00 0.00 34.03 4.96
2769 6026 3.759086 GAGAAACCTAGCCTTTTCTTGGG 59.241 47.826 11.42 0.00 41.21 4.12
2771 6028 5.066593 ACAGAGAAACCTAGCCTTTTCTTG 58.933 41.667 11.42 12.46 41.21 3.02
2777 6034 2.835156 GGAGACAGAGAAACCTAGCCTT 59.165 50.000 0.00 0.00 0.00 4.35
2778 6035 2.462723 GGAGACAGAGAAACCTAGCCT 58.537 52.381 0.00 0.00 0.00 4.58
2779 6036 1.483004 GGGAGACAGAGAAACCTAGCC 59.517 57.143 0.00 0.00 0.00 3.93
2780 6037 1.135333 CGGGAGACAGAGAAACCTAGC 59.865 57.143 0.00 0.00 0.00 3.42
2781 6038 1.135333 GCGGGAGACAGAGAAACCTAG 59.865 57.143 0.00 0.00 0.00 3.02
2782 6039 1.183549 GCGGGAGACAGAGAAACCTA 58.816 55.000 0.00 0.00 0.00 3.08
2783 6040 1.545706 GGCGGGAGACAGAGAAACCT 61.546 60.000 0.00 0.00 38.26 3.50
2784 6041 1.079057 GGCGGGAGACAGAGAAACC 60.079 63.158 0.00 0.00 38.26 3.27
2785 6042 4.600207 GGCGGGAGACAGAGAAAC 57.400 61.111 0.00 0.00 38.26 2.78
2868 6125 2.093447 ACATCTAAAGACGGAGCCCTTG 60.093 50.000 0.00 0.00 0.00 3.61
2869 6126 2.188817 ACATCTAAAGACGGAGCCCTT 58.811 47.619 0.00 0.00 0.00 3.95
2891 6148 8.710835 ACACAAACCTTAACAAAACATAAAGG 57.289 30.769 0.00 0.00 42.01 3.11
2892 6149 8.813282 GGACACAAACCTTAACAAAACATAAAG 58.187 33.333 0.00 0.00 0.00 1.85
2897 6154 5.986501 AGGACACAAACCTTAACAAAACA 57.013 34.783 0.00 0.00 33.55 2.83
2903 6160 6.285990 TCTTGAGTAGGACACAAACCTTAAC 58.714 40.000 0.00 0.00 38.76 2.01
2907 6164 4.039366 GTCTCTTGAGTAGGACACAAACCT 59.961 45.833 0.00 0.00 41.05 3.50
2909 6166 4.945246 TGTCTCTTGAGTAGGACACAAAC 58.055 43.478 0.00 0.00 32.56 2.93
2911 6168 4.893524 TCTTGTCTCTTGAGTAGGACACAA 59.106 41.667 0.00 0.09 35.30 3.33
2914 6171 3.502595 CGTCTTGTCTCTTGAGTAGGACA 59.497 47.826 14.38 0.00 34.39 4.02
2916 6173 3.752222 GTCGTCTTGTCTCTTGAGTAGGA 59.248 47.826 0.00 0.00 0.00 2.94
2918 6175 4.717991 CAGTCGTCTTGTCTCTTGAGTAG 58.282 47.826 0.00 0.00 0.00 2.57
2919 6176 3.058155 GCAGTCGTCTTGTCTCTTGAGTA 60.058 47.826 0.00 0.00 0.00 2.59
2920 6177 2.287909 GCAGTCGTCTTGTCTCTTGAGT 60.288 50.000 0.00 0.00 0.00 3.41
2921 6178 2.323959 GCAGTCGTCTTGTCTCTTGAG 58.676 52.381 0.00 0.00 0.00 3.02
2922 6179 1.335051 CGCAGTCGTCTTGTCTCTTGA 60.335 52.381 0.00 0.00 0.00 3.02
2924 6181 0.039074 CCGCAGTCGTCTTGTCTCTT 60.039 55.000 0.00 0.00 0.00 2.85
2925 6182 1.581954 CCGCAGTCGTCTTGTCTCT 59.418 57.895 0.00 0.00 0.00 3.10
2926 6183 2.089349 GCCGCAGTCGTCTTGTCTC 61.089 63.158 0.00 0.00 0.00 3.36
2930 6187 2.811317 GGAGCCGCAGTCGTCTTG 60.811 66.667 0.00 0.00 0.00 3.02
2931 6188 4.070552 GGGAGCCGCAGTCGTCTT 62.071 66.667 0.00 0.00 0.00 3.01
2933 6190 4.803426 CAGGGAGCCGCAGTCGTC 62.803 72.222 0.00 0.00 0.00 4.20
2935 6192 3.997064 CTTCAGGGAGCCGCAGTCG 62.997 68.421 0.00 0.00 0.00 4.18
2936 6193 1.965754 ATCTTCAGGGAGCCGCAGTC 61.966 60.000 0.00 0.00 0.00 3.51
2937 6194 1.992277 ATCTTCAGGGAGCCGCAGT 60.992 57.895 0.00 0.00 0.00 4.40
2938 6195 1.523258 CATCTTCAGGGAGCCGCAG 60.523 63.158 0.00 0.00 0.00 5.18
2939 6196 2.586245 CATCTTCAGGGAGCCGCA 59.414 61.111 0.00 0.00 0.00 5.69
2940 6197 2.203126 CCATCTTCAGGGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
2941 6198 1.144936 GTCCATCTTCAGGGAGCCG 59.855 63.158 0.00 0.00 32.85 5.52
2942 6199 1.529309 GGTCCATCTTCAGGGAGCC 59.471 63.158 0.00 0.00 44.03 4.70
2944 6201 1.211457 CCTTGGTCCATCTTCAGGGAG 59.789 57.143 0.00 0.00 32.85 4.30
2945 6202 1.289160 CCTTGGTCCATCTTCAGGGA 58.711 55.000 0.00 0.00 30.35 4.20
2946 6203 0.995024 ACCTTGGTCCATCTTCAGGG 59.005 55.000 10.68 0.00 34.37 4.45
2947 6204 2.307098 AGAACCTTGGTCCATCTTCAGG 59.693 50.000 5.16 5.16 0.00 3.86
2948 6205 3.710209 AGAACCTTGGTCCATCTTCAG 57.290 47.619 0.00 0.00 0.00 3.02
2949 6206 3.244911 GGAAGAACCTTGGTCCATCTTCA 60.245 47.826 24.57 0.00 44.86 3.02
2950 6207 3.348119 GGAAGAACCTTGGTCCATCTTC 58.652 50.000 18.82 18.82 43.23 2.87
2951 6208 2.041755 GGGAAGAACCTTGGTCCATCTT 59.958 50.000 5.32 5.32 38.98 2.40
2952 6209 1.636003 GGGAAGAACCTTGGTCCATCT 59.364 52.381 0.00 0.00 38.98 2.90
2953 6210 1.679032 CGGGAAGAACCTTGGTCCATC 60.679 57.143 0.00 0.00 38.98 3.51
2954 6211 0.328258 CGGGAAGAACCTTGGTCCAT 59.672 55.000 0.00 0.00 38.98 3.41
2955 6212 1.057851 ACGGGAAGAACCTTGGTCCA 61.058 55.000 0.00 0.00 38.98 4.02
2956 6213 0.321387 GACGGGAAGAACCTTGGTCC 60.321 60.000 0.00 0.00 38.98 4.46
2957 6214 0.685660 AGACGGGAAGAACCTTGGTC 59.314 55.000 0.00 0.00 38.98 4.02
2958 6215 1.900486 CTAGACGGGAAGAACCTTGGT 59.100 52.381 0.00 0.00 38.98 3.67
2959 6216 1.900486 ACTAGACGGGAAGAACCTTGG 59.100 52.381 0.00 0.00 38.98 3.61
2960 6217 2.094130 GGACTAGACGGGAAGAACCTTG 60.094 54.545 0.00 0.00 38.98 3.61
2986 6243 1.613836 ATACTAGAGGCGTTACCGGG 58.386 55.000 6.32 0.00 46.52 5.73
2987 6244 2.360165 ACAATACTAGAGGCGTTACCGG 59.640 50.000 0.00 0.00 46.52 5.28
2989 6246 4.117685 CCAACAATACTAGAGGCGTTACC 58.882 47.826 0.00 0.00 39.61 2.85
2992 6249 3.007614 ACACCAACAATACTAGAGGCGTT 59.992 43.478 0.00 0.00 0.00 4.84
2994 6251 2.930040 CACACCAACAATACTAGAGGCG 59.070 50.000 0.00 0.00 0.00 5.52
2997 6254 3.367932 CACGCACACCAACAATACTAGAG 59.632 47.826 0.00 0.00 0.00 2.43
3003 6260 0.947960 CCACACGCACACCAACAATA 59.052 50.000 0.00 0.00 0.00 1.90
3006 6263 1.817520 CTCCACACGCACACCAACA 60.818 57.895 0.00 0.00 0.00 3.33
3007 6264 2.542907 CCTCCACACGCACACCAAC 61.543 63.158 0.00 0.00 0.00 3.77
3009 6266 3.475494 ACCTCCACACGCACACCA 61.475 61.111 0.00 0.00 0.00 4.17
3010 6267 2.972505 CACCTCCACACGCACACC 60.973 66.667 0.00 0.00 0.00 4.16
3031 6288 1.339055 CCAAGAACAGATCCGCCAGAA 60.339 52.381 0.00 0.00 0.00 3.02
3036 6293 0.036388 TCCACCAAGAACAGATCCGC 60.036 55.000 0.00 0.00 0.00 5.54
3044 6301 1.133025 CCATGCGAATCCACCAAGAAC 59.867 52.381 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.