Multiple sequence alignment - TraesCS6B01G127500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G127500 chr6B 100.000 3473 0 0 1 3473 123418464 123414992 0.000000e+00 6414
1 TraesCS6B01G127500 chr6B 89.726 2482 194 26 991 3471 123206276 123203855 0.000000e+00 3114
2 TraesCS6B01G127500 chr6B 90.102 293 26 1 693 982 123019135 123018843 9.100000e-101 377
3 TraesCS6B01G127500 chr6B 84.967 306 28 10 2991 3294 122965996 122966285 9.430000e-76 294
4 TraesCS6B01G127500 chr6B 84.556 259 27 4 731 982 123470537 123470285 9.630000e-61 244
5 TraesCS6B01G127500 chr6B 92.308 78 6 0 3291 3368 122967374 122967451 1.020000e-20 111
6 TraesCS6B01G127500 chr6B 91.892 74 6 0 3397 3470 122967529 122967602 1.710000e-18 104
7 TraesCS6B01G127500 chr6A 90.004 2481 224 8 991 3471 66814153 66811697 0.000000e+00 3186
8 TraesCS6B01G127500 chr6A 89.956 1603 158 3 991 2592 66821486 66819886 0.000000e+00 2065
9 TraesCS6B01G127500 chr6A 86.314 1907 233 22 896 2796 67055572 67053688 0.000000e+00 2050
10 TraesCS6B01G127500 chr6A 85.653 1861 229 26 991 2849 66379371 66381195 0.000000e+00 1923
11 TraesCS6B01G127500 chr6A 87.988 1615 191 2 999 2613 66373445 66375056 0.000000e+00 1905
12 TraesCS6B01G127500 chr6A 88.148 270 30 2 2990 3259 66992174 66991907 1.560000e-83 320
13 TraesCS6B01G127500 chr6A 84.539 304 34 6 2991 3294 66425280 66425570 4.390000e-74 289
14 TraesCS6B01G127500 chr6A 83.942 274 20 11 714 982 66995977 66995723 1.250000e-59 241
15 TraesCS6B01G127500 chr6A 75.579 561 91 33 2420 2967 66819464 66818937 5.800000e-58 235
16 TraesCS6B01G127500 chr6A 73.958 576 89 35 2404 2967 66994070 66993544 3.560000e-40 176
17 TraesCS6B01G127500 chr6A 84.106 151 22 2 832 982 66821686 66821538 1.000000e-30 145
18 TraesCS6B01G127500 chr6A 92.308 78 6 0 3291 3368 66430179 66430256 1.020000e-20 111
19 TraesCS6B01G127500 chr6A 92.000 75 6 0 3397 3471 66430334 66430408 4.740000e-19 106
20 TraesCS6B01G127500 chr6D 90.304 2434 211 10 1040 3471 48156354 48158764 0.000000e+00 3164
21 TraesCS6B01G127500 chr6D 89.817 1581 160 1 991 2570 48468842 48467262 0.000000e+00 2026
22 TraesCS6B01G127500 chr6D 84.539 304 34 6 2991 3294 48458556 48458266 4.390000e-74 289
23 TraesCS6B01G127500 chr6D 85.547 256 33 3 2548 2801 48090698 48090951 7.390000e-67 265
24 TraesCS6B01G127500 chr6D 85.106 235 24 2 729 958 48462108 48461880 2.700000e-56 230
25 TraesCS6B01G127500 chr6D 89.844 128 8 2 2991 3118 48464716 48464594 3.590000e-35 159
26 TraesCS6B01G127500 chr6D 84.028 144 15 5 723 865 48088910 48089046 7.820000e-27 132
27 TraesCS6B01G127500 chr6D 80.214 187 25 3 796 982 48469068 48468894 2.810000e-26 130
28 TraesCS6B01G127500 chr6D 92.308 78 6 0 3291 3368 48454545 48454468 1.020000e-20 111
29 TraesCS6B01G127500 chr6D 92.000 75 6 0 3397 3471 48454390 48454316 4.740000e-19 106
30 TraesCS6B01G127500 chr7D 89.709 1856 183 5 1021 2875 192447554 192449402 0.000000e+00 2362
31 TraesCS6B01G127500 chr2D 81.061 396 52 9 238 629 615502545 615502921 9.430000e-76 294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G127500 chr6B 123414992 123418464 3472 True 6414.000000 6414 100.000000 1 3473 1 chr6B.!!$R3 3472
1 TraesCS6B01G127500 chr6B 123203855 123206276 2421 True 3114.000000 3114 89.726000 991 3471 1 chr6B.!!$R2 2480
2 TraesCS6B01G127500 chr6A 66811697 66814153 2456 True 3186.000000 3186 90.004000 991 3471 1 chr6A.!!$R1 2480
3 TraesCS6B01G127500 chr6A 67053688 67055572 1884 True 2050.000000 2050 86.314000 896 2796 1 chr6A.!!$R2 1900
4 TraesCS6B01G127500 chr6A 66379371 66381195 1824 False 1923.000000 1923 85.653000 991 2849 1 chr6A.!!$F2 1858
5 TraesCS6B01G127500 chr6A 66373445 66375056 1611 False 1905.000000 1905 87.988000 999 2613 1 chr6A.!!$F1 1614
6 TraesCS6B01G127500 chr6A 66818937 66821686 2749 True 815.000000 2065 83.213667 832 2967 3 chr6A.!!$R3 2135
7 TraesCS6B01G127500 chr6A 66991907 66995977 4070 True 245.666667 320 82.016000 714 3259 3 chr6A.!!$R4 2545
8 TraesCS6B01G127500 chr6D 48156354 48158764 2410 False 3164.000000 3164 90.304000 1040 3471 1 chr6D.!!$F1 2431
9 TraesCS6B01G127500 chr6D 48454316 48469068 14752 True 435.857143 2026 87.689714 729 3471 7 chr6D.!!$R1 2742
10 TraesCS6B01G127500 chr7D 192447554 192449402 1848 False 2362.000000 2362 89.709000 1021 2875 1 chr7D.!!$F1 1854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 623 0.033781 TACCGGAGACAACCAAACGG 59.966 55.0 9.46 0.0 46.16 4.44 F
753 754 0.251742 ACACCACCCAATCCCATGTG 60.252 55.0 0.00 0.0 0.00 3.21 F
1031 1106 0.321671 CAGGTCCGCTCTTTCTCCAA 59.678 55.0 0.00 0.0 0.00 3.53 F
1901 1984 0.444260 GTCGCTAGGCTGTTGAAAGC 59.556 55.0 0.00 0.0 42.75 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1984 1.542492 ACTGCCTTGGCTTCTCATTG 58.458 50.0 13.18 0.00 0.00 2.82 R
1917 2000 1.732941 TAACAACGCCTGGCATACTG 58.267 50.0 20.29 11.59 0.00 2.74 R
2047 10596 2.295349 CGTACCCGTGGAGCATAATAGT 59.705 50.0 0.00 0.00 0.00 2.12 R
3133 13786 0.251077 AAGGTGCTGCCAGGAAGAAG 60.251 55.0 0.00 0.00 40.61 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.458163 CCCGGCTTGCCTCGAGTA 61.458 66.667 12.31 0.00 0.00 2.59
27 28 2.105128 CCGGCTTGCCTCGAGTAG 59.895 66.667 12.31 6.87 0.00 2.57
35 36 4.035843 CCTCGAGTAGGTGGCCTT 57.964 61.111 12.31 0.00 40.94 4.35
36 37 1.817209 CCTCGAGTAGGTGGCCTTC 59.183 63.158 12.31 0.00 40.94 3.46
37 38 1.433879 CTCGAGTAGGTGGCCTTCG 59.566 63.158 3.32 4.24 35.81 3.79
38 39 1.303888 TCGAGTAGGTGGCCTTCGT 60.304 57.895 3.32 1.39 35.91 3.85
39 40 1.139095 CGAGTAGGTGGCCTTCGTC 59.861 63.158 3.32 0.00 34.61 4.20
40 41 1.139095 GAGTAGGTGGCCTTCGTCG 59.861 63.158 3.32 0.00 34.61 5.12
41 42 1.593296 GAGTAGGTGGCCTTCGTCGT 61.593 60.000 3.32 0.00 34.61 4.34
42 43 1.153881 GTAGGTGGCCTTCGTCGTC 60.154 63.158 3.32 0.00 34.61 4.20
43 44 2.345760 TAGGTGGCCTTCGTCGTCC 61.346 63.158 3.32 0.00 34.61 4.79
44 45 3.998672 GGTGGCCTTCGTCGTCCA 61.999 66.667 3.32 0.00 0.00 4.02
45 46 2.432628 GTGGCCTTCGTCGTCCAG 60.433 66.667 3.32 0.00 0.00 3.86
46 47 2.915659 TGGCCTTCGTCGTCCAGT 60.916 61.111 3.32 0.00 0.00 4.00
47 48 2.126031 GGCCTTCGTCGTCCAGTC 60.126 66.667 0.00 0.00 0.00 3.51
48 49 2.126031 GCCTTCGTCGTCCAGTCC 60.126 66.667 0.00 0.00 0.00 3.85
49 50 2.178521 CCTTCGTCGTCCAGTCCG 59.821 66.667 0.00 0.00 0.00 4.79
50 51 2.623915 CCTTCGTCGTCCAGTCCGT 61.624 63.158 0.00 0.00 0.00 4.69
51 52 1.442184 CTTCGTCGTCCAGTCCGTG 60.442 63.158 0.00 0.00 0.00 4.94
60 61 2.276869 CCAGTCCGTGGTCATCTCA 58.723 57.895 0.00 0.00 42.17 3.27
61 62 0.608130 CCAGTCCGTGGTCATCTCAA 59.392 55.000 0.00 0.00 42.17 3.02
62 63 1.673033 CCAGTCCGTGGTCATCTCAAC 60.673 57.143 0.00 0.00 42.17 3.18
63 64 0.243907 AGTCCGTGGTCATCTCAACG 59.756 55.000 0.00 0.00 0.00 4.10
64 65 0.736325 GTCCGTGGTCATCTCAACGG 60.736 60.000 6.75 6.75 41.53 4.44
65 66 1.447838 CCGTGGTCATCTCAACGGG 60.448 63.158 5.21 0.00 37.13 5.28
66 67 2.100631 CGTGGTCATCTCAACGGGC 61.101 63.158 0.00 0.00 0.00 6.13
67 68 1.296715 GTGGTCATCTCAACGGGCT 59.703 57.895 0.00 0.00 0.00 5.19
68 69 1.021390 GTGGTCATCTCAACGGGCTG 61.021 60.000 0.00 0.00 0.00 4.85
69 70 2.109126 GGTCATCTCAACGGGCTGC 61.109 63.158 0.00 0.00 0.00 5.25
70 71 1.375908 GTCATCTCAACGGGCTGCA 60.376 57.895 0.50 0.00 0.00 4.41
71 72 1.078918 TCATCTCAACGGGCTGCAG 60.079 57.895 10.11 10.11 0.00 4.41
72 73 1.078918 CATCTCAACGGGCTGCAGA 60.079 57.895 20.43 0.00 0.00 4.26
73 74 0.463295 CATCTCAACGGGCTGCAGAT 60.463 55.000 20.43 0.00 0.00 2.90
74 75 0.463295 ATCTCAACGGGCTGCAGATG 60.463 55.000 20.43 8.39 0.00 2.90
75 76 2.747460 TCAACGGGCTGCAGATGC 60.747 61.111 20.43 2.06 42.50 3.91
85 86 3.210528 GCAGATGCAGCTGGCCTC 61.211 66.667 31.37 12.53 43.89 4.70
86 87 2.516460 CAGATGCAGCTGGCCTCC 60.516 66.667 24.22 0.00 43.89 4.30
87 88 3.013327 AGATGCAGCTGGCCTCCA 61.013 61.111 17.12 4.47 43.89 3.86
88 89 2.827642 GATGCAGCTGGCCTCCAC 60.828 66.667 17.12 0.00 43.89 4.02
89 90 4.437587 ATGCAGCTGGCCTCCACC 62.438 66.667 17.12 0.00 43.89 4.61
91 92 4.357279 GCAGCTGGCCTCCACCTT 62.357 66.667 17.12 0.00 36.11 3.50
92 93 2.360852 CAGCTGGCCTCCACCTTG 60.361 66.667 5.57 0.00 0.00 3.61
93 94 4.357279 AGCTGGCCTCCACCTTGC 62.357 66.667 3.32 0.00 0.00 4.01
94 95 4.666253 GCTGGCCTCCACCTTGCA 62.666 66.667 3.32 0.00 32.64 4.08
95 96 2.674380 CTGGCCTCCACCTTGCAC 60.674 66.667 3.32 0.00 0.00 4.57
96 97 4.641645 TGGCCTCCACCTTGCACG 62.642 66.667 3.32 0.00 0.00 5.34
97 98 4.329545 GGCCTCCACCTTGCACGA 62.330 66.667 0.00 0.00 0.00 4.35
98 99 2.743928 GCCTCCACCTTGCACGAG 60.744 66.667 0.00 0.00 0.00 4.18
99 100 2.743928 CCTCCACCTTGCACGAGC 60.744 66.667 0.00 0.00 42.57 5.03
100 101 2.743928 CTCCACCTTGCACGAGCC 60.744 66.667 1.39 0.00 41.13 4.70
101 102 3.535629 CTCCACCTTGCACGAGCCA 62.536 63.158 1.39 0.00 41.13 4.75
102 103 3.357079 CCACCTTGCACGAGCCAC 61.357 66.667 1.39 0.00 41.13 5.01
104 105 3.923864 ACCTTGCACGAGCCACGA 61.924 61.111 1.39 0.00 45.77 4.35
105 106 2.664851 CCTTGCACGAGCCACGAA 60.665 61.111 1.39 0.00 45.77 3.85
106 107 2.671177 CCTTGCACGAGCCACGAAG 61.671 63.158 1.39 0.00 45.77 3.79
107 108 3.300667 CTTGCACGAGCCACGAAGC 62.301 63.158 1.39 10.76 45.77 3.86
109 110 3.782244 GCACGAGCCACGAAGCTG 61.782 66.667 8.63 4.54 45.15 4.24
110 111 2.356313 CACGAGCCACGAAGCTGT 60.356 61.111 8.63 5.08 45.15 4.40
111 112 1.956170 CACGAGCCACGAAGCTGTT 60.956 57.895 8.63 0.00 45.15 3.16
112 113 1.956170 ACGAGCCACGAAGCTGTTG 60.956 57.895 8.63 2.00 45.15 3.33
113 114 2.671177 CGAGCCACGAAGCTGTTGG 61.671 63.158 8.63 4.46 45.15 3.77
114 115 2.281761 AGCCACGAAGCTGTTGGG 60.282 61.111 9.86 1.23 42.95 4.12
115 116 4.043200 GCCACGAAGCTGTTGGGC 62.043 66.667 9.86 7.20 0.00 5.36
116 117 2.281761 CCACGAAGCTGTTGGGCT 60.282 61.111 0.00 0.00 45.30 5.19
117 118 2.328099 CCACGAAGCTGTTGGGCTC 61.328 63.158 0.00 0.00 42.24 4.70
118 119 2.357517 ACGAAGCTGTTGGGCTCG 60.358 61.111 0.37 0.37 42.24 5.03
119 120 2.048222 CGAAGCTGTTGGGCTCGA 60.048 61.111 0.00 0.00 42.24 4.04
120 121 1.448540 CGAAGCTGTTGGGCTCGAT 60.449 57.895 0.00 0.00 42.24 3.59
121 122 1.424493 CGAAGCTGTTGGGCTCGATC 61.424 60.000 0.00 0.00 42.24 3.69
122 123 1.424493 GAAGCTGTTGGGCTCGATCG 61.424 60.000 9.36 9.36 42.24 3.69
123 124 1.888436 AAGCTGTTGGGCTCGATCGA 61.888 55.000 18.32 18.32 42.24 3.59
124 125 1.227380 GCTGTTGGGCTCGATCGAT 60.227 57.895 19.78 0.00 0.00 3.59
125 126 1.493950 GCTGTTGGGCTCGATCGATG 61.494 60.000 19.78 13.59 0.00 3.84
126 127 0.103026 CTGTTGGGCTCGATCGATGA 59.897 55.000 19.78 0.00 0.00 2.92
127 128 0.103026 TGTTGGGCTCGATCGATGAG 59.897 55.000 19.78 11.28 36.53 2.90
128 129 0.598680 GTTGGGCTCGATCGATGAGG 60.599 60.000 19.78 8.05 33.99 3.86
129 130 0.755327 TTGGGCTCGATCGATGAGGA 60.755 55.000 19.78 2.39 33.99 3.71
130 131 0.755327 TGGGCTCGATCGATGAGGAA 60.755 55.000 19.78 0.00 33.99 3.36
131 132 0.038709 GGGCTCGATCGATGAGGAAG 60.039 60.000 19.78 6.07 33.99 3.46
132 133 0.038709 GGCTCGATCGATGAGGAAGG 60.039 60.000 19.78 5.28 33.99 3.46
133 134 0.038709 GCTCGATCGATGAGGAAGGG 60.039 60.000 19.78 4.51 33.99 3.95
134 135 1.610363 CTCGATCGATGAGGAAGGGA 58.390 55.000 19.78 0.00 0.00 4.20
135 136 1.539388 CTCGATCGATGAGGAAGGGAG 59.461 57.143 19.78 0.00 0.00 4.30
136 137 0.600557 CGATCGATGAGGAAGGGAGG 59.399 60.000 10.26 0.00 0.00 4.30
137 138 0.320050 GATCGATGAGGAAGGGAGGC 59.680 60.000 0.54 0.00 0.00 4.70
138 139 1.467678 ATCGATGAGGAAGGGAGGCG 61.468 60.000 0.00 0.00 0.00 5.52
139 140 2.110006 GATGAGGAAGGGAGGCGC 59.890 66.667 0.00 0.00 0.00 6.53
140 141 3.798954 GATGAGGAAGGGAGGCGCG 62.799 68.421 0.00 0.00 0.00 6.86
146 147 4.767255 AAGGGAGGCGCGCTTCAG 62.767 66.667 38.43 0.00 45.59 3.02
148 149 4.537433 GGGAGGCGCGCTTCAGAT 62.537 66.667 38.43 15.99 0.00 2.90
149 150 2.964389 GGAGGCGCGCTTCAGATC 60.964 66.667 38.43 21.24 0.00 2.75
150 151 3.326210 GAGGCGCGCTTCAGATCG 61.326 66.667 34.65 0.00 0.00 3.69
158 159 2.956964 CTTCAGATCGCGCGGGTC 60.957 66.667 31.69 26.33 0.00 4.46
159 160 3.699955 CTTCAGATCGCGCGGGTCA 62.700 63.158 31.69 11.34 0.00 4.02
160 161 3.289704 TTCAGATCGCGCGGGTCAA 62.290 57.895 31.69 15.78 0.00 3.18
161 162 3.257561 CAGATCGCGCGGGTCAAG 61.258 66.667 31.69 19.15 0.00 3.02
162 163 3.449227 AGATCGCGCGGGTCAAGA 61.449 61.111 31.69 9.10 0.00 3.02
163 164 2.508439 GATCGCGCGGGTCAAGAA 60.508 61.111 31.69 8.20 0.00 2.52
164 165 2.509336 ATCGCGCGGGTCAAGAAG 60.509 61.111 31.69 0.00 0.00 2.85
165 166 4.735132 TCGCGCGGGTCAAGAAGG 62.735 66.667 31.69 0.00 0.00 3.46
170 171 3.330720 CGGGTCAAGAAGGGCCCT 61.331 66.667 22.28 22.28 38.97 5.19
171 172 2.677848 GGGTCAAGAAGGGCCCTC 59.322 66.667 28.84 18.82 38.12 4.30
172 173 2.677848 GGTCAAGAAGGGCCCTCC 59.322 66.667 28.84 14.62 0.00 4.30
182 183 4.610526 GGCCCTCCCCATCATGGC 62.611 72.222 0.00 0.00 41.42 4.40
183 184 4.962836 GCCCTCCCCATCATGGCG 62.963 72.222 0.00 0.00 35.79 5.69
184 185 4.275508 CCCTCCCCATCATGGCGG 62.276 72.222 0.00 1.07 35.79 6.13
185 186 4.962836 CCTCCCCATCATGGCGGC 62.963 72.222 0.00 0.00 35.79 6.53
186 187 4.962836 CTCCCCATCATGGCGGCC 62.963 72.222 13.32 13.32 35.79 6.13
189 190 4.962836 CCCATCATGGCGGCCCTC 62.963 72.222 17.97 0.00 35.79 4.30
190 191 3.882326 CCATCATGGCGGCCCTCT 61.882 66.667 17.97 0.00 0.00 3.69
191 192 2.281345 CATCATGGCGGCCCTCTC 60.281 66.667 17.97 0.00 0.00 3.20
192 193 3.933722 ATCATGGCGGCCCTCTCG 61.934 66.667 17.97 0.03 0.00 4.04
194 195 4.899239 CATGGCGGCCCTCTCGAC 62.899 72.222 17.97 0.00 35.97 4.20
200 201 3.827898 GGCCCTCTCGACGGTCTG 61.828 72.222 6.57 0.31 0.00 3.51
201 202 4.500116 GCCCTCTCGACGGTCTGC 62.500 72.222 6.57 0.00 0.00 4.26
202 203 3.062466 CCCTCTCGACGGTCTGCA 61.062 66.667 6.57 0.00 0.00 4.41
203 204 2.179517 CCTCTCGACGGTCTGCAC 59.820 66.667 6.57 0.00 0.00 4.57
204 205 2.202362 CTCTCGACGGTCTGCACG 60.202 66.667 6.57 0.00 37.36 5.34
205 206 3.669036 CTCTCGACGGTCTGCACGG 62.669 68.421 6.57 0.00 35.23 4.94
206 207 4.778415 CTCGACGGTCTGCACGGG 62.778 72.222 6.57 0.00 35.23 5.28
241 242 4.096003 CGGGGCGATGGTTGGACT 62.096 66.667 0.00 0.00 0.00 3.85
242 243 2.124695 GGGGCGATGGTTGGACTC 60.125 66.667 0.00 0.00 0.00 3.36
243 244 2.511600 GGGCGATGGTTGGACTCG 60.512 66.667 0.00 0.00 35.57 4.18
246 247 2.885644 CGATGGTTGGACTCGCCG 60.886 66.667 0.00 0.00 40.66 6.46
247 248 2.577059 GATGGTTGGACTCGCCGA 59.423 61.111 0.00 0.00 40.66 5.54
280 281 3.184683 CAGCCGCTTCGCAGAGAC 61.185 66.667 0.00 0.00 38.43 3.36
281 282 4.785512 AGCCGCTTCGCAGAGACG 62.786 66.667 0.00 0.00 38.43 4.18
284 285 3.832171 CGCTTCGCAGAGACGCAC 61.832 66.667 3.58 0.00 43.48 5.34
285 286 2.734723 GCTTCGCAGAGACGCACA 60.735 61.111 0.00 0.00 42.90 4.57
286 287 2.724708 GCTTCGCAGAGACGCACAG 61.725 63.158 0.00 0.00 42.90 3.66
287 288 2.724708 CTTCGCAGAGACGCACAGC 61.725 63.158 0.00 0.00 38.43 4.40
288 289 3.212906 TTCGCAGAGACGCACAGCT 62.213 57.895 0.00 0.00 38.43 4.24
289 290 2.699576 TTCGCAGAGACGCACAGCTT 62.700 55.000 0.00 0.00 38.43 3.74
290 291 2.858868 GCAGAGACGCACAGCTTG 59.141 61.111 0.00 0.00 0.00 4.01
291 292 2.675056 GCAGAGACGCACAGCTTGG 61.675 63.158 0.00 0.00 0.00 3.61
292 293 2.358003 AGAGACGCACAGCTTGGC 60.358 61.111 0.00 0.00 0.00 4.52
293 294 3.426568 GAGACGCACAGCTTGGCC 61.427 66.667 0.00 0.00 0.00 5.36
323 324 2.559840 CAACTGCTGCAGCTTCGG 59.440 61.111 36.61 24.81 42.66 4.30
324 325 3.360340 AACTGCTGCAGCTTCGGC 61.360 61.111 36.61 10.53 42.66 5.54
347 348 4.504916 CGCGGAGGAGTCTGGCTG 62.505 72.222 0.00 0.00 0.00 4.85
348 349 4.828925 GCGGAGGAGTCTGGCTGC 62.829 72.222 0.00 0.00 35.61 5.25
350 351 1.754621 CGGAGGAGTCTGGCTGCTA 60.755 63.158 2.41 0.00 46.29 3.49
351 352 1.112315 CGGAGGAGTCTGGCTGCTAT 61.112 60.000 2.41 0.00 46.29 2.97
352 353 1.819697 CGGAGGAGTCTGGCTGCTATA 60.820 57.143 2.41 0.00 46.29 1.31
353 354 1.892474 GGAGGAGTCTGGCTGCTATAG 59.108 57.143 2.41 0.00 46.29 1.31
383 384 3.114616 CGTGGGCGAGCAAGTCTG 61.115 66.667 0.00 0.00 41.33 3.51
392 393 2.868920 GCAAGTCTGCTGCAGCTC 59.131 61.111 36.61 25.62 45.74 4.09
393 394 2.688794 GCAAGTCTGCTGCAGCTCC 61.689 63.158 36.61 23.89 45.74 4.70
394 395 1.302271 CAAGTCTGCTGCAGCTCCA 60.302 57.895 36.61 18.17 42.66 3.86
395 396 1.003597 AAGTCTGCTGCAGCTCCAG 60.004 57.895 36.61 26.21 42.66 3.86
396 397 2.436292 GTCTGCTGCAGCTCCAGG 60.436 66.667 36.61 21.07 42.66 4.45
397 398 3.714001 TCTGCTGCAGCTCCAGGG 61.714 66.667 36.61 19.50 42.66 4.45
398 399 4.031129 CTGCTGCAGCTCCAGGGT 62.031 66.667 36.61 0.00 42.66 4.34
399 400 3.564345 CTGCTGCAGCTCCAGGGTT 62.564 63.158 36.61 0.00 42.66 4.11
400 401 2.749441 GCTGCAGCTCCAGGGTTC 60.749 66.667 31.33 0.00 38.21 3.62
401 402 2.752358 CTGCAGCTCCAGGGTTCA 59.248 61.111 0.00 0.00 0.00 3.18
402 403 1.673665 CTGCAGCTCCAGGGTTCAC 60.674 63.158 0.00 0.00 0.00 3.18
403 404 2.121992 CTGCAGCTCCAGGGTTCACT 62.122 60.000 0.00 0.00 0.00 3.41
404 405 1.073897 GCAGCTCCAGGGTTCACTT 59.926 57.895 0.00 0.00 0.00 3.16
405 406 0.957888 GCAGCTCCAGGGTTCACTTC 60.958 60.000 0.00 0.00 0.00 3.01
406 407 0.322008 CAGCTCCAGGGTTCACTTCC 60.322 60.000 0.00 0.00 0.00 3.46
407 408 0.474660 AGCTCCAGGGTTCACTTCCT 60.475 55.000 0.00 0.00 0.00 3.36
408 409 0.402121 GCTCCAGGGTTCACTTCCTT 59.598 55.000 0.00 0.00 0.00 3.36
409 410 1.884067 GCTCCAGGGTTCACTTCCTTG 60.884 57.143 0.00 0.00 32.83 3.61
410 411 0.110486 TCCAGGGTTCACTTCCTTGC 59.890 55.000 0.00 0.00 31.89 4.01
411 412 0.895559 CCAGGGTTCACTTCCTTGCC 60.896 60.000 0.00 0.00 31.89 4.52
412 413 0.111253 CAGGGTTCACTTCCTTGCCT 59.889 55.000 0.00 0.00 0.00 4.75
413 414 0.111253 AGGGTTCACTTCCTTGCCTG 59.889 55.000 0.00 0.00 0.00 4.85
414 415 0.178990 GGGTTCACTTCCTTGCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
415 416 1.692411 GGTTCACTTCCTTGCCTGTT 58.308 50.000 0.00 0.00 0.00 3.16
416 417 2.488347 GGGTTCACTTCCTTGCCTGTTA 60.488 50.000 0.00 0.00 0.00 2.41
417 418 3.219281 GGTTCACTTCCTTGCCTGTTAA 58.781 45.455 0.00 0.00 0.00 2.01
418 419 3.253432 GGTTCACTTCCTTGCCTGTTAAG 59.747 47.826 0.00 0.00 0.00 1.85
419 420 3.857157 TCACTTCCTTGCCTGTTAAGT 57.143 42.857 0.00 0.00 0.00 2.24
420 421 3.476552 TCACTTCCTTGCCTGTTAAGTG 58.523 45.455 7.09 7.09 45.29 3.16
421 422 3.118038 TCACTTCCTTGCCTGTTAAGTGT 60.118 43.478 11.88 0.00 44.60 3.55
422 423 4.101898 TCACTTCCTTGCCTGTTAAGTGTA 59.898 41.667 11.88 0.00 44.60 2.90
423 424 4.452455 CACTTCCTTGCCTGTTAAGTGTAG 59.548 45.833 0.00 0.00 41.21 2.74
424 425 4.102681 ACTTCCTTGCCTGTTAAGTGTAGT 59.897 41.667 0.00 0.00 0.00 2.73
425 426 4.699925 TCCTTGCCTGTTAAGTGTAGTT 57.300 40.909 0.00 0.00 0.00 2.24
426 427 4.385825 TCCTTGCCTGTTAAGTGTAGTTG 58.614 43.478 0.00 0.00 0.00 3.16
427 428 4.134563 CCTTGCCTGTTAAGTGTAGTTGT 58.865 43.478 0.00 0.00 0.00 3.32
428 429 4.578928 CCTTGCCTGTTAAGTGTAGTTGTT 59.421 41.667 0.00 0.00 0.00 2.83
429 430 5.761234 CCTTGCCTGTTAAGTGTAGTTGTTA 59.239 40.000 0.00 0.00 0.00 2.41
430 431 6.073222 CCTTGCCTGTTAAGTGTAGTTGTTAG 60.073 42.308 0.00 0.00 0.00 2.34
431 432 4.753107 TGCCTGTTAAGTGTAGTTGTTAGC 59.247 41.667 0.00 0.00 0.00 3.09
432 433 4.995487 GCCTGTTAAGTGTAGTTGTTAGCT 59.005 41.667 0.00 0.00 0.00 3.32
433 434 6.161381 GCCTGTTAAGTGTAGTTGTTAGCTA 58.839 40.000 0.00 0.00 0.00 3.32
434 435 6.090493 GCCTGTTAAGTGTAGTTGTTAGCTAC 59.910 42.308 0.00 0.00 39.26 3.58
435 436 7.376615 CCTGTTAAGTGTAGTTGTTAGCTACT 58.623 38.462 0.00 0.00 39.47 2.57
436 437 8.517878 CCTGTTAAGTGTAGTTGTTAGCTACTA 58.482 37.037 0.00 0.00 39.47 1.82
437 438 9.903682 CTGTTAAGTGTAGTTGTTAGCTACTAA 57.096 33.333 2.73 0.00 39.47 2.24
438 439 9.903682 TGTTAAGTGTAGTTGTTAGCTACTAAG 57.096 33.333 2.73 0.00 39.47 2.18
464 465 2.927429 TGCGTGTATGCAATCAAACAC 58.073 42.857 0.00 0.00 43.02 3.32
465 466 2.250188 GCGTGTATGCAATCAAACACC 58.750 47.619 0.00 0.00 39.20 4.16
466 467 2.504868 CGTGTATGCAATCAAACACCG 58.495 47.619 0.00 0.00 39.20 4.94
467 468 2.158645 CGTGTATGCAATCAAACACCGA 59.841 45.455 0.00 0.00 39.20 4.69
468 469 3.364465 CGTGTATGCAATCAAACACCGAA 60.364 43.478 0.00 0.00 39.20 4.30
469 470 4.671508 CGTGTATGCAATCAAACACCGAAT 60.672 41.667 0.00 0.00 39.20 3.34
470 471 4.558470 GTGTATGCAATCAAACACCGAATG 59.442 41.667 0.00 0.00 36.97 2.67
471 472 4.457257 TGTATGCAATCAAACACCGAATGA 59.543 37.500 0.00 0.00 0.00 2.57
472 473 3.998099 TGCAATCAAACACCGAATGAA 57.002 38.095 0.00 0.00 0.00 2.57
473 474 4.313277 TGCAATCAAACACCGAATGAAA 57.687 36.364 0.00 0.00 0.00 2.69
474 475 4.686972 TGCAATCAAACACCGAATGAAAA 58.313 34.783 0.00 0.00 0.00 2.29
475 476 5.295950 TGCAATCAAACACCGAATGAAAAT 58.704 33.333 0.00 0.00 0.00 1.82
476 477 5.757320 TGCAATCAAACACCGAATGAAAATT 59.243 32.000 0.00 0.00 0.00 1.82
477 478 6.072733 GCAATCAAACACCGAATGAAAATTG 58.927 36.000 0.00 0.00 0.00 2.32
478 479 5.844301 ATCAAACACCGAATGAAAATTGC 57.156 34.783 0.00 0.00 0.00 3.56
479 480 4.942852 TCAAACACCGAATGAAAATTGCT 58.057 34.783 0.00 0.00 0.00 3.91
480 481 5.355596 TCAAACACCGAATGAAAATTGCTT 58.644 33.333 0.00 0.00 0.00 3.91
481 482 5.461737 TCAAACACCGAATGAAAATTGCTTC 59.538 36.000 0.00 0.00 0.00 3.86
482 483 4.582701 ACACCGAATGAAAATTGCTTCA 57.417 36.364 0.00 0.00 39.56 3.02
483 484 4.298332 ACACCGAATGAAAATTGCTTCAC 58.702 39.130 0.00 0.00 38.12 3.18
484 485 3.361644 CACCGAATGAAAATTGCTTCACG 59.638 43.478 0.00 0.00 38.12 4.35
485 486 2.916716 CCGAATGAAAATTGCTTCACGG 59.083 45.455 7.24 7.24 38.10 4.94
486 487 3.564511 CGAATGAAAATTGCTTCACGGT 58.435 40.909 0.00 0.00 38.12 4.83
487 488 3.361644 CGAATGAAAATTGCTTCACGGTG 59.638 43.478 0.56 0.56 38.12 4.94
488 489 4.545610 GAATGAAAATTGCTTCACGGTGA 58.454 39.130 6.76 6.76 38.12 4.02
489 490 3.347958 TGAAAATTGCTTCACGGTGAC 57.652 42.857 10.97 0.75 30.31 3.67
490 491 2.685388 TGAAAATTGCTTCACGGTGACA 59.315 40.909 10.97 3.71 30.31 3.58
491 492 3.129462 TGAAAATTGCTTCACGGTGACAA 59.871 39.130 10.97 12.93 30.31 3.18
492 493 3.354089 AAATTGCTTCACGGTGACAAG 57.646 42.857 10.97 7.89 0.00 3.16
493 494 2.254546 ATTGCTTCACGGTGACAAGA 57.745 45.000 10.97 0.00 0.00 3.02
494 495 1.295792 TTGCTTCACGGTGACAAGAC 58.704 50.000 10.97 4.23 0.00 3.01
495 496 0.176910 TGCTTCACGGTGACAAGACA 59.823 50.000 10.97 6.60 0.00 3.41
496 497 1.202639 TGCTTCACGGTGACAAGACAT 60.203 47.619 10.97 0.00 0.00 3.06
497 498 1.461127 GCTTCACGGTGACAAGACATC 59.539 52.381 10.97 0.00 0.00 3.06
498 499 2.754472 CTTCACGGTGACAAGACATCA 58.246 47.619 10.97 0.00 0.00 3.07
499 500 2.148916 TCACGGTGACAAGACATCAC 57.851 50.000 6.76 0.00 44.80 3.06
500 501 1.410882 TCACGGTGACAAGACATCACA 59.589 47.619 6.76 0.00 46.89 3.58
501 502 2.037121 TCACGGTGACAAGACATCACAT 59.963 45.455 6.76 0.00 46.89 3.21
502 503 2.158254 CACGGTGACAAGACATCACATG 59.842 50.000 0.74 0.00 46.89 3.21
503 504 1.129251 CGGTGACAAGACATCACATGC 59.871 52.381 7.38 0.00 46.89 4.06
504 505 2.153645 GGTGACAAGACATCACATGCA 58.846 47.619 7.38 0.00 46.89 3.96
505 506 2.161012 GGTGACAAGACATCACATGCAG 59.839 50.000 7.38 0.00 46.89 4.41
506 507 3.069289 GTGACAAGACATCACATGCAGA 58.931 45.455 0.00 0.00 44.87 4.26
507 508 3.069289 TGACAAGACATCACATGCAGAC 58.931 45.455 0.00 0.00 0.00 3.51
508 509 3.069289 GACAAGACATCACATGCAGACA 58.931 45.455 0.00 0.00 0.00 3.41
509 510 3.479489 ACAAGACATCACATGCAGACAA 58.521 40.909 0.00 0.00 0.00 3.18
510 511 3.251729 ACAAGACATCACATGCAGACAAC 59.748 43.478 0.00 0.00 0.00 3.32
511 512 2.430465 AGACATCACATGCAGACAACC 58.570 47.619 0.00 0.00 0.00 3.77
512 513 2.153645 GACATCACATGCAGACAACCA 58.846 47.619 0.00 0.00 0.00 3.67
513 514 2.553602 GACATCACATGCAGACAACCAA 59.446 45.455 0.00 0.00 0.00 3.67
514 515 2.957680 ACATCACATGCAGACAACCAAA 59.042 40.909 0.00 0.00 0.00 3.28
515 516 3.243501 ACATCACATGCAGACAACCAAAC 60.244 43.478 0.00 0.00 0.00 2.93
516 517 2.653726 TCACATGCAGACAACCAAACT 58.346 42.857 0.00 0.00 0.00 2.66
517 518 3.814625 TCACATGCAGACAACCAAACTA 58.185 40.909 0.00 0.00 0.00 2.24
518 519 4.397420 TCACATGCAGACAACCAAACTAT 58.603 39.130 0.00 0.00 0.00 2.12
519 520 4.826733 TCACATGCAGACAACCAAACTATT 59.173 37.500 0.00 0.00 0.00 1.73
520 521 5.301551 TCACATGCAGACAACCAAACTATTT 59.698 36.000 0.00 0.00 0.00 1.40
521 522 5.403166 CACATGCAGACAACCAAACTATTTG 59.597 40.000 0.00 0.00 40.32 2.32
522 523 5.068987 ACATGCAGACAACCAAACTATTTGT 59.931 36.000 0.00 0.00 38.98 2.83
523 524 5.181690 TGCAGACAACCAAACTATTTGTC 57.818 39.130 5.71 5.71 46.31 3.18
529 530 7.623268 GACAACCAAACTATTTGTCAACATC 57.377 36.000 8.46 0.00 45.60 3.06
530 531 6.205784 ACAACCAAACTATTTGTCAACATCG 58.794 36.000 0.97 0.00 38.98 3.84
531 532 6.183360 ACAACCAAACTATTTGTCAACATCGT 60.183 34.615 0.97 0.00 38.98 3.73
532 533 6.385649 ACCAAACTATTTGTCAACATCGTT 57.614 33.333 0.97 0.00 38.98 3.85
533 534 6.801575 ACCAAACTATTTGTCAACATCGTTT 58.198 32.000 0.97 0.00 38.98 3.60
534 535 7.262048 ACCAAACTATTTGTCAACATCGTTTT 58.738 30.769 0.97 0.00 38.98 2.43
535 536 7.762159 ACCAAACTATTTGTCAACATCGTTTTT 59.238 29.630 0.97 0.00 38.98 1.94
536 537 8.055402 CCAAACTATTTGTCAACATCGTTTTTG 58.945 33.333 0.97 0.00 38.98 2.44
537 538 6.747659 ACTATTTGTCAACATCGTTTTTGC 57.252 33.333 0.00 0.00 0.00 3.68
538 539 5.689961 ACTATTTGTCAACATCGTTTTTGCC 59.310 36.000 0.00 0.00 0.00 4.52
539 540 3.791973 TTGTCAACATCGTTTTTGCCT 57.208 38.095 0.00 0.00 0.00 4.75
540 541 3.791973 TGTCAACATCGTTTTTGCCTT 57.208 38.095 0.00 0.00 0.00 4.35
541 542 4.902443 TGTCAACATCGTTTTTGCCTTA 57.098 36.364 0.00 0.00 0.00 2.69
542 543 5.446143 TGTCAACATCGTTTTTGCCTTAT 57.554 34.783 0.00 0.00 0.00 1.73
543 544 5.837437 TGTCAACATCGTTTTTGCCTTATT 58.163 33.333 0.00 0.00 0.00 1.40
544 545 6.276847 TGTCAACATCGTTTTTGCCTTATTT 58.723 32.000 0.00 0.00 0.00 1.40
545 546 6.758886 TGTCAACATCGTTTTTGCCTTATTTT 59.241 30.769 0.00 0.00 0.00 1.82
546 547 7.043059 TGTCAACATCGTTTTTGCCTTATTTTC 60.043 33.333 0.00 0.00 0.00 2.29
547 548 7.169140 GTCAACATCGTTTTTGCCTTATTTTCT 59.831 33.333 0.00 0.00 0.00 2.52
548 549 7.381139 TCAACATCGTTTTTGCCTTATTTTCTC 59.619 33.333 0.00 0.00 0.00 2.87
549 550 6.981722 ACATCGTTTTTGCCTTATTTTCTCT 58.018 32.000 0.00 0.00 0.00 3.10
550 551 7.433680 ACATCGTTTTTGCCTTATTTTCTCTT 58.566 30.769 0.00 0.00 0.00 2.85
551 552 8.573035 ACATCGTTTTTGCCTTATTTTCTCTTA 58.427 29.630 0.00 0.00 0.00 2.10
552 553 9.405587 CATCGTTTTTGCCTTATTTTCTCTTAA 57.594 29.630 0.00 0.00 0.00 1.85
553 554 8.791355 TCGTTTTTGCCTTATTTTCTCTTAAC 57.209 30.769 0.00 0.00 0.00 2.01
554 555 7.863877 TCGTTTTTGCCTTATTTTCTCTTAACC 59.136 33.333 0.00 0.00 0.00 2.85
555 556 7.650104 CGTTTTTGCCTTATTTTCTCTTAACCA 59.350 33.333 0.00 0.00 0.00 3.67
556 557 8.978539 GTTTTTGCCTTATTTTCTCTTAACCAG 58.021 33.333 0.00 0.00 0.00 4.00
557 558 6.834168 TTGCCTTATTTTCTCTTAACCAGG 57.166 37.500 0.00 0.00 0.00 4.45
558 559 4.705023 TGCCTTATTTTCTCTTAACCAGGC 59.295 41.667 0.00 0.00 37.98 4.85
559 560 4.098044 GCCTTATTTTCTCTTAACCAGGCC 59.902 45.833 0.00 0.00 0.00 5.19
560 561 4.645136 CCTTATTTTCTCTTAACCAGGCCC 59.355 45.833 0.00 0.00 0.00 5.80
561 562 5.510430 CTTATTTTCTCTTAACCAGGCCCT 58.490 41.667 0.00 0.00 0.00 5.19
562 563 2.879103 TTTCTCTTAACCAGGCCCTG 57.121 50.000 2.91 2.91 0.00 4.45
573 574 4.416738 GGCCCTGGTCAGCCTGAC 62.417 72.222 16.63 16.63 46.14 3.51
574 575 3.325753 GCCCTGGTCAGCCTGACT 61.326 66.667 23.23 0.00 46.19 3.41
575 576 2.985456 CCCTGGTCAGCCTGACTC 59.015 66.667 23.23 14.19 46.19 3.36
576 577 1.915266 CCCTGGTCAGCCTGACTCA 60.915 63.158 23.23 17.57 46.19 3.41
577 578 1.270414 CCCTGGTCAGCCTGACTCAT 61.270 60.000 23.23 0.00 46.19 2.90
578 579 0.617413 CCTGGTCAGCCTGACTCATT 59.383 55.000 23.23 0.00 46.19 2.57
579 580 1.004044 CCTGGTCAGCCTGACTCATTT 59.996 52.381 23.23 0.00 46.19 2.32
580 581 2.553904 CCTGGTCAGCCTGACTCATTTT 60.554 50.000 23.23 0.00 46.19 1.82
581 582 3.152341 CTGGTCAGCCTGACTCATTTTT 58.848 45.455 23.23 0.00 46.19 1.94
582 583 2.886523 TGGTCAGCCTGACTCATTTTTG 59.113 45.455 23.23 0.00 46.19 2.44
583 584 2.887152 GGTCAGCCTGACTCATTTTTGT 59.113 45.455 23.23 0.00 46.19 2.83
584 585 3.057946 GGTCAGCCTGACTCATTTTTGTC 60.058 47.826 23.23 0.04 46.19 3.18
585 586 3.057946 GTCAGCCTGACTCATTTTTGTCC 60.058 47.826 17.57 0.00 43.73 4.02
586 587 3.152341 CAGCCTGACTCATTTTTGTCCT 58.848 45.455 0.00 0.00 32.67 3.85
587 588 3.190118 CAGCCTGACTCATTTTTGTCCTC 59.810 47.826 0.00 0.00 32.67 3.71
588 589 3.073650 AGCCTGACTCATTTTTGTCCTCT 59.926 43.478 0.00 0.00 32.67 3.69
589 590 3.190118 GCCTGACTCATTTTTGTCCTCTG 59.810 47.826 0.00 0.00 32.67 3.35
590 591 4.392940 CCTGACTCATTTTTGTCCTCTGT 58.607 43.478 0.00 0.00 32.67 3.41
591 592 5.551233 CCTGACTCATTTTTGTCCTCTGTA 58.449 41.667 0.00 0.00 32.67 2.74
592 593 5.409826 CCTGACTCATTTTTGTCCTCTGTAC 59.590 44.000 0.00 0.00 32.67 2.90
593 594 5.305585 TGACTCATTTTTGTCCTCTGTACC 58.694 41.667 0.00 0.00 32.67 3.34
594 595 5.071788 TGACTCATTTTTGTCCTCTGTACCT 59.928 40.000 0.00 0.00 32.67 3.08
595 596 5.308825 ACTCATTTTTGTCCTCTGTACCTG 58.691 41.667 0.00 0.00 0.00 4.00
596 597 4.072131 TCATTTTTGTCCTCTGTACCTGC 58.928 43.478 0.00 0.00 0.00 4.85
597 598 3.569194 TTTTTGTCCTCTGTACCTGCA 57.431 42.857 0.00 0.00 0.00 4.41
598 599 2.543777 TTTGTCCTCTGTACCTGCAC 57.456 50.000 0.00 0.00 0.00 4.57
599 600 1.717032 TTGTCCTCTGTACCTGCACT 58.283 50.000 0.00 0.00 0.00 4.40
600 601 2.597578 TGTCCTCTGTACCTGCACTA 57.402 50.000 0.00 0.00 0.00 2.74
601 602 3.101643 TGTCCTCTGTACCTGCACTAT 57.898 47.619 0.00 0.00 0.00 2.12
602 603 3.441101 TGTCCTCTGTACCTGCACTATT 58.559 45.455 0.00 0.00 0.00 1.73
603 604 3.838317 TGTCCTCTGTACCTGCACTATTT 59.162 43.478 0.00 0.00 0.00 1.40
604 605 5.020795 TGTCCTCTGTACCTGCACTATTTA 58.979 41.667 0.00 0.00 0.00 1.40
605 606 5.105473 TGTCCTCTGTACCTGCACTATTTAC 60.105 44.000 0.00 0.00 0.00 2.01
606 607 4.404715 TCCTCTGTACCTGCACTATTTACC 59.595 45.833 0.00 0.00 0.00 2.85
607 608 4.360563 CTCTGTACCTGCACTATTTACCG 58.639 47.826 0.00 0.00 0.00 4.02
608 609 3.131577 TCTGTACCTGCACTATTTACCGG 59.868 47.826 0.00 0.00 0.00 5.28
609 610 3.098377 TGTACCTGCACTATTTACCGGA 58.902 45.455 9.46 0.00 0.00 5.14
610 611 2.981859 ACCTGCACTATTTACCGGAG 57.018 50.000 9.46 0.00 0.00 4.63
611 612 2.463752 ACCTGCACTATTTACCGGAGA 58.536 47.619 9.46 0.00 0.00 3.71
612 613 2.167900 ACCTGCACTATTTACCGGAGAC 59.832 50.000 9.46 0.00 0.00 3.36
613 614 2.167693 CCTGCACTATTTACCGGAGACA 59.832 50.000 9.46 0.00 0.00 3.41
614 615 3.369052 CCTGCACTATTTACCGGAGACAA 60.369 47.826 9.46 0.00 0.00 3.18
615 616 3.592059 TGCACTATTTACCGGAGACAAC 58.408 45.455 9.46 0.00 0.00 3.32
616 617 2.934553 GCACTATTTACCGGAGACAACC 59.065 50.000 9.46 0.00 0.00 3.77
617 618 3.618019 GCACTATTTACCGGAGACAACCA 60.618 47.826 9.46 0.00 0.00 3.67
618 619 4.571919 CACTATTTACCGGAGACAACCAA 58.428 43.478 9.46 0.00 0.00 3.67
619 620 4.998672 CACTATTTACCGGAGACAACCAAA 59.001 41.667 9.46 0.00 0.00 3.28
620 621 4.999311 ACTATTTACCGGAGACAACCAAAC 59.001 41.667 9.46 0.00 0.00 2.93
621 622 1.868469 TTACCGGAGACAACCAAACG 58.132 50.000 9.46 0.00 0.00 3.60
622 623 0.033781 TACCGGAGACAACCAAACGG 59.966 55.000 9.46 0.00 46.16 4.44
623 624 2.613506 CCGGAGACAACCAAACGGC 61.614 63.158 0.00 0.00 34.54 5.68
624 625 2.613506 CGGAGACAACCAAACGGCC 61.614 63.158 0.00 0.00 0.00 6.13
625 626 2.265904 GGAGACAACCAAACGGCCC 61.266 63.158 0.00 0.00 0.00 5.80
626 627 1.527380 GAGACAACCAAACGGCCCA 60.527 57.895 0.00 0.00 0.00 5.36
627 628 0.893727 GAGACAACCAAACGGCCCAT 60.894 55.000 0.00 0.00 0.00 4.00
628 629 0.402504 AGACAACCAAACGGCCCATA 59.597 50.000 0.00 0.00 0.00 2.74
629 630 1.202952 AGACAACCAAACGGCCCATAA 60.203 47.619 0.00 0.00 0.00 1.90
630 631 1.614413 GACAACCAAACGGCCCATAAA 59.386 47.619 0.00 0.00 0.00 1.40
631 632 2.036089 GACAACCAAACGGCCCATAAAA 59.964 45.455 0.00 0.00 0.00 1.52
632 633 2.434702 ACAACCAAACGGCCCATAAAAA 59.565 40.909 0.00 0.00 0.00 1.94
652 653 6.639632 AAAAAGAGAGCAAGAGCATAAACA 57.360 33.333 0.00 0.00 45.49 2.83
653 654 6.830873 AAAAGAGAGCAAGAGCATAAACAT 57.169 33.333 0.00 0.00 45.49 2.71
654 655 6.434018 AAAGAGAGCAAGAGCATAAACATC 57.566 37.500 0.00 0.00 45.49 3.06
655 656 5.095145 AGAGAGCAAGAGCATAAACATCA 57.905 39.130 0.00 0.00 45.49 3.07
656 657 5.682659 AGAGAGCAAGAGCATAAACATCAT 58.317 37.500 0.00 0.00 45.49 2.45
657 658 5.527951 AGAGAGCAAGAGCATAAACATCATG 59.472 40.000 0.00 0.00 45.49 3.07
658 659 5.434408 AGAGCAAGAGCATAAACATCATGA 58.566 37.500 0.00 0.00 45.49 3.07
659 660 5.527951 AGAGCAAGAGCATAAACATCATGAG 59.472 40.000 0.09 0.00 45.49 2.90
660 661 5.434408 AGCAAGAGCATAAACATCATGAGA 58.566 37.500 0.09 0.00 45.49 3.27
661 662 5.884232 AGCAAGAGCATAAACATCATGAGAA 59.116 36.000 0.09 0.00 45.49 2.87
662 663 6.546403 AGCAAGAGCATAAACATCATGAGAAT 59.454 34.615 0.09 0.00 45.49 2.40
663 664 6.856938 GCAAGAGCATAAACATCATGAGAATC 59.143 38.462 0.09 0.00 41.58 2.52
664 665 7.255173 GCAAGAGCATAAACATCATGAGAATCT 60.255 37.037 0.09 0.00 41.58 2.40
665 666 8.622157 CAAGAGCATAAACATCATGAGAATCTT 58.378 33.333 0.09 0.00 34.92 2.40
666 667 9.842775 AAGAGCATAAACATCATGAGAATCTTA 57.157 29.630 0.09 0.00 34.92 2.10
667 668 9.842775 AGAGCATAAACATCATGAGAATCTTAA 57.157 29.630 0.09 0.00 34.92 1.85
725 726 4.743151 CCAACAGAATTACATGATGCATGC 59.257 41.667 11.82 11.82 44.80 4.06
727 728 5.847111 ACAGAATTACATGATGCATGCTT 57.153 34.783 20.33 13.23 44.80 3.91
753 754 0.251742 ACACCACCCAATCCCATGTG 60.252 55.000 0.00 0.00 0.00 3.21
754 755 4.360643 CCACCCAATCCCATGTGG 57.639 61.111 0.00 0.00 42.01 4.17
777 778 3.505386 AGTAAAATGATTGGTGCACCCA 58.495 40.909 32.62 23.39 43.27 4.51
787 788 2.200930 TGCACCCACCCAGCAAAT 59.799 55.556 0.00 0.00 34.97 2.32
805 806 4.467084 GGAATCCCAGTCGCGCCA 62.467 66.667 0.00 0.00 0.00 5.69
847 848 2.683475 CCCAATCCCACACCTCCC 59.317 66.667 0.00 0.00 0.00 4.30
868 881 4.371417 ACCGTCCTCCCGCCACTA 62.371 66.667 0.00 0.00 0.00 2.74
871 884 2.772691 CGTCCTCCCGCCACTAGAC 61.773 68.421 0.00 0.00 0.00 2.59
874 887 3.141488 CTCCCGCCACTAGACGCT 61.141 66.667 0.00 0.00 0.00 5.07
891 909 2.838693 TCCCGTGGTTGGTCGTCA 60.839 61.111 0.00 0.00 0.00 4.35
935 965 1.134281 GCTGCAAGAAGAAGCGAGC 59.866 57.895 0.00 0.00 39.67 5.03
936 966 1.419143 CTGCAAGAAGAAGCGAGCG 59.581 57.895 0.00 0.00 34.07 5.03
937 967 1.006220 TGCAAGAAGAAGCGAGCGA 60.006 52.632 0.00 0.00 0.00 4.93
938 968 1.284982 TGCAAGAAGAAGCGAGCGAC 61.285 55.000 0.00 0.00 0.00 5.19
939 969 1.284982 GCAAGAAGAAGCGAGCGACA 61.285 55.000 0.00 0.00 0.00 4.35
940 970 0.436531 CAAGAAGAAGCGAGCGACAC 59.563 55.000 0.00 0.00 0.00 3.67
941 971 0.667792 AAGAAGAAGCGAGCGACACC 60.668 55.000 0.00 0.00 0.00 4.16
942 972 1.372997 GAAGAAGCGAGCGACACCA 60.373 57.895 0.00 0.00 0.00 4.17
943 973 1.618640 GAAGAAGCGAGCGACACCAC 61.619 60.000 0.00 0.00 0.00 4.16
944 974 3.112709 GAAGCGAGCGACACCACC 61.113 66.667 0.00 0.00 0.00 4.61
945 975 4.681978 AAGCGAGCGACACCACCC 62.682 66.667 0.00 0.00 0.00 4.61
950 980 2.524394 AGCGACACCACCCAGTCT 60.524 61.111 0.00 0.00 32.68 3.24
984 1014 3.009714 GTCCTCCTCCCACCACCC 61.010 72.222 0.00 0.00 0.00 4.61
985 1015 3.537506 TCCTCCTCCCACCACCCA 61.538 66.667 0.00 0.00 0.00 4.51
988 1018 4.194497 TCCTCCCACCACCCACCA 62.194 66.667 0.00 0.00 0.00 4.17
1031 1106 0.321671 CAGGTCCGCTCTTTCTCCAA 59.678 55.000 0.00 0.00 0.00 3.53
1035 1110 1.273886 GTCCGCTCTTTCTCCAACTCT 59.726 52.381 0.00 0.00 0.00 3.24
1041 1116 4.384940 GCTCTTTCTCCAACTCTGTTTCT 58.615 43.478 0.00 0.00 0.00 2.52
1046 1121 4.753516 TCTCCAACTCTGTTTCTTCACA 57.246 40.909 0.00 0.00 0.00 3.58
1066 1141 2.031012 CCAACGAGCTGCTGGACA 59.969 61.111 18.76 0.00 35.74 4.02
1084 1164 0.529378 CAAACTCCAAGGCCATCTGC 59.471 55.000 5.01 0.00 40.16 4.26
1332 1415 4.637534 AGCATACTAATTGAGTGTTGCCAG 59.362 41.667 7.11 0.00 44.04 4.85
1377 1460 4.157120 GCCTTCTTCGGCCGCCTA 62.157 66.667 23.51 7.32 44.41 3.93
1738 1821 3.066342 CGATGTGGTGACGTATAACTCCT 59.934 47.826 0.00 0.00 0.00 3.69
1773 1856 1.687660 TGCAAAGCAAGAGCAATGGAA 59.312 42.857 0.00 0.00 45.49 3.53
1785 1868 2.041620 AGCAATGGAAAAGGCAGAGGTA 59.958 45.455 0.00 0.00 0.00 3.08
1830 1913 2.422276 GTGTCCAACCAAATGCTGTC 57.578 50.000 0.00 0.00 0.00 3.51
1901 1984 0.444260 GTCGCTAGGCTGTTGAAAGC 59.556 55.000 0.00 0.00 42.75 3.51
1917 2000 0.893447 AAGCAATGAGAAGCCAAGGC 59.107 50.000 2.02 2.02 42.33 4.35
1986 10535 4.464951 TGCAAGCATGGAAGAATCAAAGAT 59.535 37.500 0.00 0.00 0.00 2.40
2004 10553 7.703328 TCAAAGATGCCGAGGAAATATTTTAC 58.297 34.615 1.43 0.00 0.00 2.01
2047 10596 7.658261 CCGAAAACCAGATATAGTCTCATACA 58.342 38.462 0.00 0.00 34.00 2.29
2061 10610 6.987386 AGTCTCATACACTATTATGCTCCAC 58.013 40.000 0.00 0.00 30.60 4.02
2209 10758 0.176449 GGATGTGGCCATGCTTTTCC 59.824 55.000 9.72 5.77 36.56 3.13
2352 10901 1.053424 TGGGAGTACCAGTTGACACC 58.947 55.000 0.00 0.00 46.80 4.16
2456 11005 7.327064 AGAACAGGGATATTCATCATAAGCT 57.673 36.000 0.00 0.00 32.32 3.74
2586 11308 3.380637 CCAAGATGGAGAAAGCATTCAGG 59.619 47.826 4.27 0.00 40.96 3.86
2647 11940 7.635423 TGTTGTTATTACACAGCACTTAACTG 58.365 34.615 0.00 0.00 41.08 3.16
2674 11968 4.774124 TGGTTATGCTCTCATCTTCTTGG 58.226 43.478 0.00 0.00 34.22 3.61
2715 12010 1.078918 CCTGATTGCTCCAGCGTGA 60.079 57.895 0.00 0.00 45.83 4.35
2972 12275 9.716507 CCAAAAATGACCTATTGATAAGTTACG 57.283 33.333 0.00 0.00 0.00 3.18
3114 13764 3.550820 TGCGCCAAATGGTTACTATGAT 58.449 40.909 4.18 0.00 37.57 2.45
3376 17755 3.389329 CAGCTCTTGGATAGTATGTGGGT 59.611 47.826 0.00 0.00 0.00 4.51
3413 17841 0.326264 GCCTCTCCTTCCTTGCAAGA 59.674 55.000 28.05 11.04 0.00 3.02
3471 17899 2.125147 TCATTTCGCAGGCCTCGG 60.125 61.111 19.88 8.69 0.00 4.63
3472 17900 2.436646 CATTTCGCAGGCCTCGGT 60.437 61.111 19.88 7.95 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.432051 CTACTCGAGGCAAGCCGGG 62.432 68.421 18.41 1.75 41.95 5.73
10 11 2.105128 CTACTCGAGGCAAGCCGG 59.895 66.667 18.41 0.00 41.95 6.13
11 12 2.105128 CCTACTCGAGGCAAGCCG 59.895 66.667 18.41 0.00 38.96 5.52
19 20 1.313812 ACGAAGGCCACCTACTCGAG 61.314 60.000 11.84 11.84 36.36 4.04
20 21 1.303888 ACGAAGGCCACCTACTCGA 60.304 57.895 5.01 0.00 36.36 4.04
21 22 1.139095 GACGAAGGCCACCTACTCG 59.861 63.158 5.01 5.68 39.10 4.18
22 23 1.139095 CGACGAAGGCCACCTACTC 59.861 63.158 5.01 0.00 31.13 2.59
23 24 1.593296 GACGACGAAGGCCACCTACT 61.593 60.000 5.01 0.00 31.13 2.57
24 25 1.153881 GACGACGAAGGCCACCTAC 60.154 63.158 5.01 0.00 31.13 3.18
25 26 2.345760 GGACGACGAAGGCCACCTA 61.346 63.158 5.01 0.00 39.73 3.08
26 27 3.692406 GGACGACGAAGGCCACCT 61.692 66.667 5.01 0.00 39.73 4.00
27 28 3.934391 CTGGACGACGAAGGCCACC 62.934 68.421 5.01 0.00 46.16 4.61
28 29 2.432628 CTGGACGACGAAGGCCAC 60.433 66.667 5.01 0.00 46.16 5.01
30 31 2.126031 GACTGGACGACGAAGGCC 60.126 66.667 0.00 0.00 40.61 5.19
31 32 2.126031 GGACTGGACGACGAAGGC 60.126 66.667 0.00 0.00 0.00 4.35
32 33 2.178521 CGGACTGGACGACGAAGG 59.821 66.667 0.00 0.00 0.00 3.46
33 34 1.442184 CACGGACTGGACGACGAAG 60.442 63.158 0.00 0.00 34.93 3.79
34 35 2.640989 CACGGACTGGACGACGAA 59.359 61.111 0.00 0.00 34.93 3.85
35 36 3.359523 CCACGGACTGGACGACGA 61.360 66.667 0.00 0.00 43.95 4.20
36 37 3.606065 GACCACGGACTGGACGACG 62.606 68.421 0.00 0.00 43.95 5.12
37 38 1.874345 ATGACCACGGACTGGACGAC 61.874 60.000 0.00 0.00 43.95 4.34
38 39 1.592400 GATGACCACGGACTGGACGA 61.592 60.000 0.00 0.00 43.95 4.20
39 40 1.153823 GATGACCACGGACTGGACG 60.154 63.158 0.00 0.00 43.95 4.79
40 41 0.173708 GAGATGACCACGGACTGGAC 59.826 60.000 0.00 0.00 43.95 4.02
41 42 0.251608 TGAGATGACCACGGACTGGA 60.252 55.000 0.00 0.00 43.95 3.86
43 44 1.714794 GTTGAGATGACCACGGACTG 58.285 55.000 0.00 0.00 0.00 3.51
44 45 0.243907 CGTTGAGATGACCACGGACT 59.756 55.000 0.00 0.00 0.00 3.85
45 46 0.736325 CCGTTGAGATGACCACGGAC 60.736 60.000 3.46 0.00 42.63 4.79
46 47 1.589630 CCGTTGAGATGACCACGGA 59.410 57.895 3.46 0.00 42.63 4.69
47 48 1.447838 CCCGTTGAGATGACCACGG 60.448 63.158 2.54 2.54 40.07 4.94
48 49 2.100631 GCCCGTTGAGATGACCACG 61.101 63.158 0.00 0.00 0.00 4.94
49 50 1.021390 CAGCCCGTTGAGATGACCAC 61.021 60.000 0.00 0.00 0.00 4.16
50 51 1.296392 CAGCCCGTTGAGATGACCA 59.704 57.895 0.00 0.00 0.00 4.02
51 52 2.109126 GCAGCCCGTTGAGATGACC 61.109 63.158 0.00 0.00 0.00 4.02
52 53 1.364626 CTGCAGCCCGTTGAGATGAC 61.365 60.000 0.00 0.00 0.00 3.06
53 54 1.078918 CTGCAGCCCGTTGAGATGA 60.079 57.895 0.00 0.00 0.00 2.92
54 55 0.463295 ATCTGCAGCCCGTTGAGATG 60.463 55.000 9.47 0.00 0.00 2.90
55 56 0.463295 CATCTGCAGCCCGTTGAGAT 60.463 55.000 9.47 0.00 0.00 2.75
56 57 1.078918 CATCTGCAGCCCGTTGAGA 60.079 57.895 9.47 0.00 0.00 3.27
57 58 2.758089 GCATCTGCAGCCCGTTGAG 61.758 63.158 9.47 0.00 41.59 3.02
58 59 2.747460 GCATCTGCAGCCCGTTGA 60.747 61.111 9.47 0.00 41.59 3.18
67 68 3.989838 GAGGCCAGCTGCATCTGCA 62.990 63.158 12.13 4.58 46.99 4.41
68 69 3.210528 GAGGCCAGCTGCATCTGC 61.211 66.667 12.13 5.70 46.99 4.26
78 79 2.674380 GTGCAAGGTGGAGGCCAG 60.674 66.667 5.01 0.00 32.34 4.85
79 80 4.641645 CGTGCAAGGTGGAGGCCA 62.642 66.667 5.01 0.00 0.00 5.36
80 81 4.329545 TCGTGCAAGGTGGAGGCC 62.330 66.667 0.00 0.00 0.00 5.19
81 82 2.743928 CTCGTGCAAGGTGGAGGC 60.744 66.667 0.00 0.00 0.00 4.70
82 83 2.743928 GCTCGTGCAAGGTGGAGG 60.744 66.667 4.26 0.00 39.41 4.30
83 84 2.743928 GGCTCGTGCAAGGTGGAG 60.744 66.667 12.07 0.00 41.91 3.86
84 85 3.555324 TGGCTCGTGCAAGGTGGA 61.555 61.111 12.07 0.00 41.91 4.02
85 86 3.357079 GTGGCTCGTGCAAGGTGG 61.357 66.667 12.07 0.00 41.91 4.61
86 87 3.716006 CGTGGCTCGTGCAAGGTG 61.716 66.667 12.07 0.00 41.91 4.00
87 88 3.454587 TTCGTGGCTCGTGCAAGGT 62.455 57.895 12.07 0.00 41.91 3.50
88 89 2.664851 TTCGTGGCTCGTGCAAGG 60.665 61.111 12.07 5.98 41.91 3.61
89 90 2.856032 CTTCGTGGCTCGTGCAAG 59.144 61.111 12.07 2.50 41.91 4.01
90 91 3.345808 GCTTCGTGGCTCGTGCAA 61.346 61.111 12.07 0.00 41.91 4.08
91 92 4.299547 AGCTTCGTGGCTCGTGCA 62.300 61.111 22.56 0.00 38.24 4.57
92 93 3.782244 CAGCTTCGTGGCTCGTGC 61.782 66.667 16.72 16.72 41.00 5.34
93 94 1.956170 AACAGCTTCGTGGCTCGTG 60.956 57.895 8.94 2.51 41.00 4.35
94 95 1.956170 CAACAGCTTCGTGGCTCGT 60.956 57.895 8.94 2.98 41.00 4.18
95 96 2.671177 CCAACAGCTTCGTGGCTCG 61.671 63.158 1.94 1.94 41.00 5.03
96 97 2.328099 CCCAACAGCTTCGTGGCTC 61.328 63.158 2.09 0.00 41.00 4.70
97 98 2.281761 CCCAACAGCTTCGTGGCT 60.282 61.111 2.09 0.00 44.10 4.75
98 99 4.043200 GCCCAACAGCTTCGTGGC 62.043 66.667 2.09 0.51 0.00 5.01
99 100 2.281761 AGCCCAACAGCTTCGTGG 60.282 61.111 0.78 0.78 41.41 4.94
100 101 2.671177 CGAGCCCAACAGCTTCGTG 61.671 63.158 0.00 0.00 45.15 4.35
101 102 2.172483 ATCGAGCCCAACAGCTTCGT 62.172 55.000 2.02 0.00 45.15 3.85
102 103 1.424493 GATCGAGCCCAACAGCTTCG 61.424 60.000 0.00 0.00 45.15 3.79
103 104 1.424493 CGATCGAGCCCAACAGCTTC 61.424 60.000 10.26 0.00 45.15 3.86
104 105 1.448540 CGATCGAGCCCAACAGCTT 60.449 57.895 10.26 0.00 45.15 3.74
106 107 1.227380 ATCGATCGAGCCCAACAGC 60.227 57.895 23.84 0.00 0.00 4.40
107 108 0.103026 TCATCGATCGAGCCCAACAG 59.897 55.000 23.84 5.75 0.00 3.16
108 109 0.103026 CTCATCGATCGAGCCCAACA 59.897 55.000 23.84 0.00 0.00 3.33
109 110 0.598680 CCTCATCGATCGAGCCCAAC 60.599 60.000 23.84 0.00 0.00 3.77
110 111 0.755327 TCCTCATCGATCGAGCCCAA 60.755 55.000 23.84 6.10 0.00 4.12
111 112 0.755327 TTCCTCATCGATCGAGCCCA 60.755 55.000 23.84 5.98 0.00 5.36
112 113 0.038709 CTTCCTCATCGATCGAGCCC 60.039 60.000 23.84 0.00 0.00 5.19
113 114 0.038709 CCTTCCTCATCGATCGAGCC 60.039 60.000 23.84 0.00 0.00 4.70
114 115 0.038709 CCCTTCCTCATCGATCGAGC 60.039 60.000 23.84 0.00 0.00 5.03
115 116 1.539388 CTCCCTTCCTCATCGATCGAG 59.461 57.143 23.84 14.92 0.00 4.04
116 117 1.610363 CTCCCTTCCTCATCGATCGA 58.390 55.000 21.86 21.86 0.00 3.59
117 118 0.600557 CCTCCCTTCCTCATCGATCG 59.399 60.000 9.36 9.36 0.00 3.69
118 119 0.320050 GCCTCCCTTCCTCATCGATC 59.680 60.000 0.00 0.00 0.00 3.69
119 120 1.467678 CGCCTCCCTTCCTCATCGAT 61.468 60.000 0.00 0.00 0.00 3.59
120 121 2.127869 CGCCTCCCTTCCTCATCGA 61.128 63.158 0.00 0.00 0.00 3.59
121 122 2.419198 CGCCTCCCTTCCTCATCG 59.581 66.667 0.00 0.00 0.00 3.84
122 123 2.110006 GCGCCTCCCTTCCTCATC 59.890 66.667 0.00 0.00 0.00 2.92
123 124 3.854669 CGCGCCTCCCTTCCTCAT 61.855 66.667 0.00 0.00 0.00 2.90
128 129 4.760047 TGAAGCGCGCCTCCCTTC 62.760 66.667 30.33 23.95 36.42 3.46
129 130 4.767255 CTGAAGCGCGCCTCCCTT 62.767 66.667 30.33 15.78 0.00 3.95
131 132 4.537433 ATCTGAAGCGCGCCTCCC 62.537 66.667 30.33 14.92 0.00 4.30
132 133 2.964389 GATCTGAAGCGCGCCTCC 60.964 66.667 30.33 17.64 0.00 4.30
133 134 3.326210 CGATCTGAAGCGCGCCTC 61.326 66.667 30.33 26.15 0.00 4.70
141 142 2.956964 GACCCGCGCGATCTGAAG 60.957 66.667 34.63 12.66 0.00 3.02
142 143 3.289704 TTGACCCGCGCGATCTGAA 62.290 57.895 34.63 15.95 0.00 3.02
143 144 3.699955 CTTGACCCGCGCGATCTGA 62.700 63.158 34.63 18.30 0.00 3.27
144 145 3.257561 CTTGACCCGCGCGATCTG 61.258 66.667 34.63 18.63 0.00 2.90
145 146 2.890847 CTTCTTGACCCGCGCGATCT 62.891 60.000 34.63 13.01 0.00 2.75
146 147 2.508439 TTCTTGACCCGCGCGATC 60.508 61.111 34.63 27.28 0.00 3.69
147 148 2.509336 CTTCTTGACCCGCGCGAT 60.509 61.111 34.63 19.92 0.00 4.58
148 149 4.735132 CCTTCTTGACCCGCGCGA 62.735 66.667 34.63 8.46 0.00 5.87
154 155 2.677848 GAGGGCCCTTCTTGACCC 59.322 66.667 29.39 6.39 43.17 4.46
155 156 2.677848 GGAGGGCCCTTCTTGACC 59.322 66.667 29.39 18.21 0.00 4.02
165 166 4.610526 GCCATGATGGGGAGGGCC 62.611 72.222 14.26 0.00 38.19 5.80
172 173 4.962836 GAGGGCCGCCATGATGGG 62.963 72.222 14.26 3.29 38.19 4.00
173 174 3.839353 GAGAGGGCCGCCATGATGG 62.839 68.421 12.58 7.21 41.55 3.51
174 175 2.281345 GAGAGGGCCGCCATGATG 60.281 66.667 12.58 0.00 0.00 3.07
175 176 3.933722 CGAGAGGGCCGCCATGAT 61.934 66.667 12.58 0.00 0.00 2.45
177 178 4.899239 GTCGAGAGGGCCGCCATG 62.899 72.222 12.58 0.00 0.00 3.66
183 184 3.827898 CAGACCGTCGAGAGGGCC 61.828 72.222 8.98 0.00 37.55 5.80
184 185 4.500116 GCAGACCGTCGAGAGGGC 62.500 72.222 11.32 8.10 39.85 5.19
185 186 3.062466 TGCAGACCGTCGAGAGGG 61.062 66.667 9.98 9.98 41.83 4.30
186 187 2.179517 GTGCAGACCGTCGAGAGG 59.820 66.667 5.39 5.39 0.00 3.69
187 188 2.202362 CGTGCAGACCGTCGAGAG 60.202 66.667 0.00 0.00 0.00 3.20
188 189 3.733960 CCGTGCAGACCGTCGAGA 61.734 66.667 0.00 0.00 0.00 4.04
189 190 4.778415 CCCGTGCAGACCGTCGAG 62.778 72.222 0.00 0.00 0.00 4.04
224 225 4.096003 AGTCCAACCATCGCCCCG 62.096 66.667 0.00 0.00 0.00 5.73
225 226 2.124695 GAGTCCAACCATCGCCCC 60.125 66.667 0.00 0.00 0.00 5.80
226 227 2.511600 CGAGTCCAACCATCGCCC 60.512 66.667 0.00 0.00 0.00 6.13
229 230 2.885644 CGGCGAGTCCAACCATCG 60.886 66.667 0.00 0.00 39.40 3.84
230 231 1.810030 GTCGGCGAGTCCAACCATC 60.810 63.158 11.20 0.00 34.01 3.51
231 232 2.264794 GTCGGCGAGTCCAACCAT 59.735 61.111 11.20 0.00 34.01 3.55
232 233 4.351938 CGTCGGCGAGTCCAACCA 62.352 66.667 11.20 0.00 41.33 3.67
269 270 2.724708 GCTGTGCGTCTCTGCGAAG 61.725 63.158 0.00 0.00 37.81 3.79
270 271 2.699576 AAGCTGTGCGTCTCTGCGAA 62.700 55.000 0.00 0.00 37.81 4.70
271 272 3.212906 AAGCTGTGCGTCTCTGCGA 62.213 57.895 0.00 0.00 37.81 5.10
272 273 2.736236 AAGCTGTGCGTCTCTGCG 60.736 61.111 0.00 0.00 37.81 5.18
273 274 2.675056 CCAAGCTGTGCGTCTCTGC 61.675 63.158 0.00 0.00 0.00 4.26
274 275 2.675056 GCCAAGCTGTGCGTCTCTG 61.675 63.158 0.00 0.00 0.00 3.35
275 276 2.358003 GCCAAGCTGTGCGTCTCT 60.358 61.111 0.00 0.00 0.00 3.10
276 277 3.426568 GGCCAAGCTGTGCGTCTC 61.427 66.667 0.00 0.00 0.00 3.36
306 307 2.559840 CCGAAGCTGCAGCAGTTG 59.440 61.111 38.24 27.27 45.16 3.16
307 308 3.360340 GCCGAAGCTGCAGCAGTT 61.360 61.111 38.24 25.71 45.16 3.16
330 331 4.504916 CAGCCAGACTCCTCCGCG 62.505 72.222 0.00 0.00 0.00 6.46
331 332 4.828925 GCAGCCAGACTCCTCCGC 62.829 72.222 0.00 0.00 0.00 5.54
332 333 1.112315 ATAGCAGCCAGACTCCTCCG 61.112 60.000 0.00 0.00 0.00 4.63
333 334 1.892474 CTATAGCAGCCAGACTCCTCC 59.108 57.143 0.00 0.00 0.00 4.30
334 335 1.272212 GCTATAGCAGCCAGACTCCTC 59.728 57.143 20.01 0.00 45.23 3.71
335 336 1.337118 GCTATAGCAGCCAGACTCCT 58.663 55.000 20.01 0.00 45.23 3.69
336 337 3.904586 GCTATAGCAGCCAGACTCC 57.095 57.895 20.01 0.00 45.23 3.85
345 346 0.958091 ACTCGCTGGAGCTATAGCAG 59.042 55.000 26.07 15.68 44.48 4.24
346 347 0.670706 CACTCGCTGGAGCTATAGCA 59.329 55.000 26.07 5.29 44.48 3.49
347 348 0.665972 GCACTCGCTGGAGCTATAGC 60.666 60.000 17.33 17.33 44.48 2.97
348 349 0.386605 CGCACTCGCTGGAGCTATAG 60.387 60.000 0.00 0.00 44.48 1.31
349 350 1.101635 ACGCACTCGCTGGAGCTATA 61.102 55.000 0.00 0.00 44.48 1.31
350 351 2.415010 CGCACTCGCTGGAGCTAT 59.585 61.111 0.00 0.00 44.48 2.97
351 352 3.062466 ACGCACTCGCTGGAGCTA 61.062 61.111 0.00 0.00 44.48 3.32
352 353 4.731612 CACGCACTCGCTGGAGCT 62.732 66.667 0.00 0.00 44.48 4.09
366 367 3.114616 CAGACTTGCTCGCCCACG 61.115 66.667 0.00 0.00 42.01 4.94
367 368 3.426568 GCAGACTTGCTCGCCCAC 61.427 66.667 0.00 0.00 46.95 4.61
376 377 1.299562 CTGGAGCTGCAGCAGACTTG 61.300 60.000 38.24 19.40 45.16 3.16
377 378 1.003597 CTGGAGCTGCAGCAGACTT 60.004 57.895 38.24 19.47 45.16 3.01
378 379 2.663796 CTGGAGCTGCAGCAGACT 59.336 61.111 38.24 21.14 45.16 3.24
379 380 2.436292 CCTGGAGCTGCAGCAGAC 60.436 66.667 38.24 26.80 45.16 3.51
380 381 3.714001 CCCTGGAGCTGCAGCAGA 61.714 66.667 38.24 20.90 45.16 4.26
381 382 3.564345 AACCCTGGAGCTGCAGCAG 62.564 63.158 38.24 26.51 45.16 4.24
382 383 3.557903 GAACCCTGGAGCTGCAGCA 62.558 63.158 38.24 18.87 45.16 4.41
383 384 2.749441 GAACCCTGGAGCTGCAGC 60.749 66.667 31.53 31.53 42.49 5.25
384 385 1.673665 GTGAACCCTGGAGCTGCAG 60.674 63.158 26.95 26.95 0.00 4.41
385 386 1.708993 AAGTGAACCCTGGAGCTGCA 61.709 55.000 7.99 7.99 0.00 4.41
386 387 0.957888 GAAGTGAACCCTGGAGCTGC 60.958 60.000 0.00 0.00 0.00 5.25
387 388 0.322008 GGAAGTGAACCCTGGAGCTG 60.322 60.000 0.00 0.00 0.00 4.24
388 389 0.474660 AGGAAGTGAACCCTGGAGCT 60.475 55.000 0.00 0.00 0.00 4.09
389 390 0.402121 AAGGAAGTGAACCCTGGAGC 59.598 55.000 0.00 0.00 32.12 4.70
390 391 1.884067 GCAAGGAAGTGAACCCTGGAG 60.884 57.143 0.00 0.00 32.12 3.86
391 392 0.110486 GCAAGGAAGTGAACCCTGGA 59.890 55.000 0.00 0.00 32.12 3.86
392 393 0.895559 GGCAAGGAAGTGAACCCTGG 60.896 60.000 0.00 0.00 32.12 4.45
393 394 0.111253 AGGCAAGGAAGTGAACCCTG 59.889 55.000 0.00 0.00 32.12 4.45
394 395 0.111253 CAGGCAAGGAAGTGAACCCT 59.889 55.000 0.00 0.00 0.00 4.34
395 396 0.178990 ACAGGCAAGGAAGTGAACCC 60.179 55.000 0.00 0.00 0.00 4.11
396 397 1.692411 AACAGGCAAGGAAGTGAACC 58.308 50.000 0.00 0.00 0.00 3.62
397 398 3.883489 ACTTAACAGGCAAGGAAGTGAAC 59.117 43.478 0.00 0.00 0.00 3.18
398 399 3.882888 CACTTAACAGGCAAGGAAGTGAA 59.117 43.478 13.77 0.00 46.39 3.18
399 400 3.118038 ACACTTAACAGGCAAGGAAGTGA 60.118 43.478 21.49 0.00 46.39 3.41
400 401 3.904136 CACTTAACAGGCAAGGAAGTG 57.096 47.619 7.62 7.62 40.58 3.16
401 402 3.577805 ACACTTAACAGGCAAGGAAGT 57.422 42.857 0.00 0.00 0.00 3.01
402 403 4.642429 ACTACACTTAACAGGCAAGGAAG 58.358 43.478 0.00 0.00 0.00 3.46
403 404 4.699925 ACTACACTTAACAGGCAAGGAA 57.300 40.909 0.00 0.00 0.00 3.36
404 405 4.141574 ACAACTACACTTAACAGGCAAGGA 60.142 41.667 0.00 0.00 0.00 3.36
405 406 4.134563 ACAACTACACTTAACAGGCAAGG 58.865 43.478 0.00 0.00 0.00 3.61
406 407 5.751243 AACAACTACACTTAACAGGCAAG 57.249 39.130 0.00 0.00 0.00 4.01
407 408 5.237779 GCTAACAACTACACTTAACAGGCAA 59.762 40.000 0.00 0.00 0.00 4.52
408 409 4.753107 GCTAACAACTACACTTAACAGGCA 59.247 41.667 0.00 0.00 0.00 4.75
409 410 4.995487 AGCTAACAACTACACTTAACAGGC 59.005 41.667 0.00 0.00 0.00 4.85
410 411 7.376615 AGTAGCTAACAACTACACTTAACAGG 58.623 38.462 0.00 0.00 42.04 4.00
411 412 9.903682 TTAGTAGCTAACAACTACACTTAACAG 57.096 33.333 0.00 0.00 42.04 3.16
412 413 9.903682 CTTAGTAGCTAACAACTACACTTAACA 57.096 33.333 0.00 0.00 42.04 2.41
413 414 8.858186 GCTTAGTAGCTAACAACTACACTTAAC 58.142 37.037 0.00 0.00 44.27 2.01
414 415 8.976986 GCTTAGTAGCTAACAACTACACTTAA 57.023 34.615 0.00 0.00 44.27 1.85
440 441 1.748950 TGATTGCATACACGCATGGT 58.251 45.000 0.00 0.00 42.62 3.55
441 442 2.847959 TTGATTGCATACACGCATGG 57.152 45.000 0.00 0.00 42.62 3.66
442 443 3.301379 GTGTTTGATTGCATACACGCATG 59.699 43.478 0.00 0.00 43.52 4.06
443 444 3.500982 GTGTTTGATTGCATACACGCAT 58.499 40.909 0.00 0.00 43.52 4.73
444 445 2.927429 GTGTTTGATTGCATACACGCA 58.073 42.857 0.00 0.00 43.52 5.24
448 449 4.457257 TCATTCGGTGTTTGATTGCATACA 59.543 37.500 0.00 0.00 34.30 2.29
449 450 4.980590 TCATTCGGTGTTTGATTGCATAC 58.019 39.130 0.00 0.00 0.00 2.39
450 451 5.635417 TTCATTCGGTGTTTGATTGCATA 57.365 34.783 0.00 0.00 0.00 3.14
451 452 4.517952 TTCATTCGGTGTTTGATTGCAT 57.482 36.364 0.00 0.00 0.00 3.96
452 453 3.998099 TTCATTCGGTGTTTGATTGCA 57.002 38.095 0.00 0.00 0.00 4.08
453 454 5.844301 ATTTTCATTCGGTGTTTGATTGC 57.156 34.783 0.00 0.00 0.00 3.56
454 455 6.072733 GCAATTTTCATTCGGTGTTTGATTG 58.927 36.000 0.00 0.00 0.00 2.67
455 456 5.990996 AGCAATTTTCATTCGGTGTTTGATT 59.009 32.000 0.00 0.00 0.00 2.57
456 457 5.540911 AGCAATTTTCATTCGGTGTTTGAT 58.459 33.333 0.00 0.00 0.00 2.57
457 458 4.942852 AGCAATTTTCATTCGGTGTTTGA 58.057 34.783 0.00 0.00 0.00 2.69
458 459 5.233902 TGAAGCAATTTTCATTCGGTGTTTG 59.766 36.000 0.00 0.00 32.39 2.93
459 460 5.234116 GTGAAGCAATTTTCATTCGGTGTTT 59.766 36.000 0.00 0.00 39.13 2.83
460 461 4.744631 GTGAAGCAATTTTCATTCGGTGTT 59.255 37.500 0.00 0.00 39.13 3.32
461 462 4.298332 GTGAAGCAATTTTCATTCGGTGT 58.702 39.130 0.00 0.00 39.13 4.16
462 463 3.361644 CGTGAAGCAATTTTCATTCGGTG 59.638 43.478 0.00 0.00 39.13 4.94
463 464 3.564511 CGTGAAGCAATTTTCATTCGGT 58.435 40.909 0.00 0.00 39.13 4.69
464 465 2.916716 CCGTGAAGCAATTTTCATTCGG 59.083 45.455 7.24 7.24 39.07 4.30
465 466 3.361644 CACCGTGAAGCAATTTTCATTCG 59.638 43.478 0.00 0.00 39.13 3.34
466 467 4.382754 GTCACCGTGAAGCAATTTTCATTC 59.617 41.667 1.88 0.00 39.13 2.67
467 468 4.202101 TGTCACCGTGAAGCAATTTTCATT 60.202 37.500 1.88 0.00 39.13 2.57
468 469 3.317711 TGTCACCGTGAAGCAATTTTCAT 59.682 39.130 1.88 0.00 39.13 2.57
469 470 2.685388 TGTCACCGTGAAGCAATTTTCA 59.315 40.909 1.88 0.00 34.83 2.69
470 471 3.347958 TGTCACCGTGAAGCAATTTTC 57.652 42.857 1.88 0.00 0.00 2.29
471 472 3.380004 TCTTGTCACCGTGAAGCAATTTT 59.620 39.130 1.88 0.00 0.00 1.82
472 473 2.948979 TCTTGTCACCGTGAAGCAATTT 59.051 40.909 1.88 0.00 0.00 1.82
473 474 2.290641 GTCTTGTCACCGTGAAGCAATT 59.709 45.455 1.88 0.00 0.00 2.32
474 475 1.873591 GTCTTGTCACCGTGAAGCAAT 59.126 47.619 1.88 0.00 0.00 3.56
475 476 1.295792 GTCTTGTCACCGTGAAGCAA 58.704 50.000 1.88 3.75 0.00 3.91
476 477 0.176910 TGTCTTGTCACCGTGAAGCA 59.823 50.000 1.88 0.00 0.00 3.91
477 478 1.461127 GATGTCTTGTCACCGTGAAGC 59.539 52.381 1.88 0.00 0.00 3.86
478 479 2.476619 GTGATGTCTTGTCACCGTGAAG 59.523 50.000 1.88 0.00 39.99 3.02
479 480 2.159028 TGTGATGTCTTGTCACCGTGAA 60.159 45.455 1.88 0.00 44.10 3.18
480 481 1.410882 TGTGATGTCTTGTCACCGTGA 59.589 47.619 0.00 0.00 44.10 4.35
481 482 1.864565 TGTGATGTCTTGTCACCGTG 58.135 50.000 4.06 0.00 44.10 4.94
482 483 2.416747 CATGTGATGTCTTGTCACCGT 58.583 47.619 4.06 0.00 44.10 4.83
483 484 1.129251 GCATGTGATGTCTTGTCACCG 59.871 52.381 4.06 0.00 44.10 4.94
484 485 2.153645 TGCATGTGATGTCTTGTCACC 58.846 47.619 4.06 0.00 44.10 4.02
485 486 3.069289 TCTGCATGTGATGTCTTGTCAC 58.931 45.455 0.00 0.00 44.77 3.67
486 487 3.069289 GTCTGCATGTGATGTCTTGTCA 58.931 45.455 0.00 0.00 0.00 3.58
487 488 3.069289 TGTCTGCATGTGATGTCTTGTC 58.931 45.455 0.00 0.00 0.00 3.18
488 489 3.130280 TGTCTGCATGTGATGTCTTGT 57.870 42.857 0.00 0.00 0.00 3.16
489 490 3.365666 GGTTGTCTGCATGTGATGTCTTG 60.366 47.826 0.00 0.00 0.00 3.02
490 491 2.816087 GGTTGTCTGCATGTGATGTCTT 59.184 45.455 0.00 0.00 0.00 3.01
491 492 2.224597 TGGTTGTCTGCATGTGATGTCT 60.225 45.455 0.00 0.00 0.00 3.41
492 493 2.153645 TGGTTGTCTGCATGTGATGTC 58.846 47.619 0.00 0.00 0.00 3.06
493 494 2.275134 TGGTTGTCTGCATGTGATGT 57.725 45.000 0.00 0.00 0.00 3.06
494 495 3.005050 AGTTTGGTTGTCTGCATGTGATG 59.995 43.478 0.00 0.00 0.00 3.07
495 496 3.225104 AGTTTGGTTGTCTGCATGTGAT 58.775 40.909 0.00 0.00 0.00 3.06
496 497 2.653726 AGTTTGGTTGTCTGCATGTGA 58.346 42.857 0.00 0.00 0.00 3.58
497 498 4.771590 ATAGTTTGGTTGTCTGCATGTG 57.228 40.909 0.00 0.00 0.00 3.21
498 499 5.068987 ACAAATAGTTTGGTTGTCTGCATGT 59.931 36.000 7.28 0.00 44.81 3.21
499 500 5.531634 ACAAATAGTTTGGTTGTCTGCATG 58.468 37.500 7.28 0.00 44.81 4.06
500 501 5.772521 GACAAATAGTTTGGTTGTCTGCAT 58.227 37.500 8.19 0.00 44.95 3.96
501 502 5.181690 GACAAATAGTTTGGTTGTCTGCA 57.818 39.130 8.19 0.00 44.95 4.41
506 507 6.183360 ACGATGTTGACAAATAGTTTGGTTGT 60.183 34.615 7.28 0.00 44.81 3.32
507 508 6.205784 ACGATGTTGACAAATAGTTTGGTTG 58.794 36.000 7.28 0.00 44.81 3.77
508 509 6.385649 ACGATGTTGACAAATAGTTTGGTT 57.614 33.333 7.28 0.00 44.81 3.67
509 510 6.385649 AACGATGTTGACAAATAGTTTGGT 57.614 33.333 7.28 0.00 44.81 3.67
510 511 7.692908 AAAACGATGTTGACAAATAGTTTGG 57.307 32.000 15.25 0.00 44.81 3.28
511 512 7.578736 GCAAAAACGATGTTGACAAATAGTTTG 59.421 33.333 15.25 1.15 45.95 2.93
512 513 7.254286 GGCAAAAACGATGTTGACAAATAGTTT 60.254 33.333 0.00 11.77 32.68 2.66
513 514 6.200097 GGCAAAAACGATGTTGACAAATAGTT 59.800 34.615 0.00 0.00 32.68 2.24
514 515 5.689961 GGCAAAAACGATGTTGACAAATAGT 59.310 36.000 0.00 0.00 32.68 2.12
515 516 5.920273 AGGCAAAAACGATGTTGACAAATAG 59.080 36.000 4.04 0.00 35.04 1.73
516 517 5.837437 AGGCAAAAACGATGTTGACAAATA 58.163 33.333 4.04 0.00 35.04 1.40
517 518 4.692228 AGGCAAAAACGATGTTGACAAAT 58.308 34.783 4.04 0.00 35.04 2.32
518 519 4.116747 AGGCAAAAACGATGTTGACAAA 57.883 36.364 4.04 0.00 35.04 2.83
519 520 3.791973 AGGCAAAAACGATGTTGACAA 57.208 38.095 4.04 0.00 35.04 3.18
520 521 3.791973 AAGGCAAAAACGATGTTGACA 57.208 38.095 4.04 0.00 35.04 3.58
521 522 6.763303 AAATAAGGCAAAAACGATGTTGAC 57.237 33.333 0.00 0.00 32.56 3.18
522 523 7.206687 AGAAAATAAGGCAAAAACGATGTTGA 58.793 30.769 0.00 0.00 0.00 3.18
523 524 7.382218 AGAGAAAATAAGGCAAAAACGATGTTG 59.618 33.333 0.00 0.00 0.00 3.33
524 525 7.433680 AGAGAAAATAAGGCAAAAACGATGTT 58.566 30.769 0.00 0.00 0.00 2.71
525 526 6.981722 AGAGAAAATAAGGCAAAAACGATGT 58.018 32.000 0.00 0.00 0.00 3.06
526 527 7.873739 AAGAGAAAATAAGGCAAAAACGATG 57.126 32.000 0.00 0.00 0.00 3.84
527 528 9.406828 GTTAAGAGAAAATAAGGCAAAAACGAT 57.593 29.630 0.00 0.00 0.00 3.73
528 529 7.863877 GGTTAAGAGAAAATAAGGCAAAAACGA 59.136 33.333 0.00 0.00 0.00 3.85
529 530 7.650104 TGGTTAAGAGAAAATAAGGCAAAAACG 59.350 33.333 0.00 0.00 0.00 3.60
530 531 8.880878 TGGTTAAGAGAAAATAAGGCAAAAAC 57.119 30.769 0.00 0.00 0.00 2.43
531 532 8.147704 CCTGGTTAAGAGAAAATAAGGCAAAAA 58.852 33.333 0.00 0.00 0.00 1.94
532 533 7.666623 CCTGGTTAAGAGAAAATAAGGCAAAA 58.333 34.615 0.00 0.00 0.00 2.44
533 534 6.295067 GCCTGGTTAAGAGAAAATAAGGCAAA 60.295 38.462 5.04 0.00 37.48 3.68
534 535 5.185056 GCCTGGTTAAGAGAAAATAAGGCAA 59.815 40.000 5.04 0.00 37.48 4.52
535 536 4.705023 GCCTGGTTAAGAGAAAATAAGGCA 59.295 41.667 5.04 0.00 37.48 4.75
536 537 4.098044 GGCCTGGTTAAGAGAAAATAAGGC 59.902 45.833 0.00 0.00 36.88 4.35
537 538 4.645136 GGGCCTGGTTAAGAGAAAATAAGG 59.355 45.833 0.84 0.00 0.00 2.69
538 539 5.358160 CAGGGCCTGGTTAAGAGAAAATAAG 59.642 44.000 26.34 0.00 0.00 1.73
539 540 5.261216 CAGGGCCTGGTTAAGAGAAAATAA 58.739 41.667 26.34 0.00 0.00 1.40
540 541 4.325030 CCAGGGCCTGGTTAAGAGAAAATA 60.325 45.833 39.34 0.00 45.82 1.40
541 542 3.564352 CCAGGGCCTGGTTAAGAGAAAAT 60.564 47.826 39.34 0.00 45.82 1.82
542 543 2.225017 CCAGGGCCTGGTTAAGAGAAAA 60.225 50.000 39.34 0.00 45.82 2.29
543 544 1.354368 CCAGGGCCTGGTTAAGAGAAA 59.646 52.381 39.34 0.00 45.82 2.52
544 545 0.991920 CCAGGGCCTGGTTAAGAGAA 59.008 55.000 39.34 0.00 45.82 2.87
545 546 2.696864 CCAGGGCCTGGTTAAGAGA 58.303 57.895 39.34 0.00 45.82 3.10
564 565 3.149196 GGACAAAAATGAGTCAGGCTGA 58.851 45.455 14.43 14.43 36.50 4.26
565 566 3.152341 AGGACAAAAATGAGTCAGGCTG 58.848 45.455 8.58 8.58 36.50 4.85
566 567 3.073650 AGAGGACAAAAATGAGTCAGGCT 59.926 43.478 0.00 0.00 36.50 4.58
567 568 3.190118 CAGAGGACAAAAATGAGTCAGGC 59.810 47.826 0.00 0.00 36.50 4.85
568 569 4.392940 ACAGAGGACAAAAATGAGTCAGG 58.607 43.478 0.00 0.00 36.50 3.86
569 570 5.409826 GGTACAGAGGACAAAAATGAGTCAG 59.590 44.000 0.00 0.00 36.50 3.51
570 571 5.071788 AGGTACAGAGGACAAAAATGAGTCA 59.928 40.000 0.00 0.00 36.50 3.41
571 572 5.409826 CAGGTACAGAGGACAAAAATGAGTC 59.590 44.000 0.00 0.00 0.00 3.36
572 573 5.308825 CAGGTACAGAGGACAAAAATGAGT 58.691 41.667 0.00 0.00 0.00 3.41
573 574 4.154918 GCAGGTACAGAGGACAAAAATGAG 59.845 45.833 0.00 0.00 0.00 2.90
574 575 4.072131 GCAGGTACAGAGGACAAAAATGA 58.928 43.478 0.00 0.00 0.00 2.57
575 576 3.820467 TGCAGGTACAGAGGACAAAAATG 59.180 43.478 0.00 0.00 0.00 2.32
576 577 3.821033 GTGCAGGTACAGAGGACAAAAAT 59.179 43.478 0.00 0.00 0.00 1.82
577 578 3.118038 AGTGCAGGTACAGAGGACAAAAA 60.118 43.478 0.00 0.00 0.00 1.94
578 579 2.438021 AGTGCAGGTACAGAGGACAAAA 59.562 45.455 0.00 0.00 0.00 2.44
579 580 2.047061 AGTGCAGGTACAGAGGACAAA 58.953 47.619 0.00 0.00 0.00 2.83
580 581 1.717032 AGTGCAGGTACAGAGGACAA 58.283 50.000 0.00 0.00 0.00 3.18
581 582 2.597578 TAGTGCAGGTACAGAGGACA 57.402 50.000 0.00 0.00 0.00 4.02
582 583 4.473477 AAATAGTGCAGGTACAGAGGAC 57.527 45.455 0.00 0.00 0.00 3.85
583 584 4.404715 GGTAAATAGTGCAGGTACAGAGGA 59.595 45.833 0.00 0.00 0.00 3.71
584 585 4.694339 GGTAAATAGTGCAGGTACAGAGG 58.306 47.826 0.00 0.00 0.00 3.69
585 586 4.360563 CGGTAAATAGTGCAGGTACAGAG 58.639 47.826 0.00 0.00 0.00 3.35
586 587 3.131577 CCGGTAAATAGTGCAGGTACAGA 59.868 47.826 0.00 0.00 0.00 3.41
587 588 3.131577 TCCGGTAAATAGTGCAGGTACAG 59.868 47.826 0.00 0.00 0.00 2.74
588 589 3.098377 TCCGGTAAATAGTGCAGGTACA 58.902 45.455 0.00 0.00 0.00 2.90
589 590 3.382546 TCTCCGGTAAATAGTGCAGGTAC 59.617 47.826 0.00 0.00 0.00 3.34
590 591 3.382546 GTCTCCGGTAAATAGTGCAGGTA 59.617 47.826 0.00 0.00 0.00 3.08
591 592 2.167900 GTCTCCGGTAAATAGTGCAGGT 59.832 50.000 0.00 0.00 0.00 4.00
592 593 2.167693 TGTCTCCGGTAAATAGTGCAGG 59.832 50.000 0.00 0.00 0.00 4.85
593 594 3.520290 TGTCTCCGGTAAATAGTGCAG 57.480 47.619 0.00 0.00 0.00 4.41
594 595 3.592059 GTTGTCTCCGGTAAATAGTGCA 58.408 45.455 0.00 0.00 0.00 4.57
595 596 2.934553 GGTTGTCTCCGGTAAATAGTGC 59.065 50.000 0.00 0.00 0.00 4.40
596 597 4.196626 TGGTTGTCTCCGGTAAATAGTG 57.803 45.455 0.00 0.00 0.00 2.74
597 598 4.895668 TTGGTTGTCTCCGGTAAATAGT 57.104 40.909 0.00 0.00 0.00 2.12
598 599 4.092383 CGTTTGGTTGTCTCCGGTAAATAG 59.908 45.833 0.00 0.00 0.00 1.73
599 600 3.995705 CGTTTGGTTGTCTCCGGTAAATA 59.004 43.478 0.00 0.00 0.00 1.40
600 601 2.809696 CGTTTGGTTGTCTCCGGTAAAT 59.190 45.455 0.00 0.00 0.00 1.40
601 602 2.211806 CGTTTGGTTGTCTCCGGTAAA 58.788 47.619 0.00 0.00 0.00 2.01
602 603 1.540797 CCGTTTGGTTGTCTCCGGTAA 60.541 52.381 0.00 0.00 0.00 2.85
603 604 0.033781 CCGTTTGGTTGTCTCCGGTA 59.966 55.000 0.00 0.00 0.00 4.02
604 605 1.227734 CCGTTTGGTTGTCTCCGGT 60.228 57.895 0.00 0.00 0.00 5.28
605 606 2.613506 GCCGTTTGGTTGTCTCCGG 61.614 63.158 0.00 0.00 37.67 5.14
606 607 2.613506 GGCCGTTTGGTTGTCTCCG 61.614 63.158 0.00 0.00 37.67 4.63
607 608 2.265904 GGGCCGTTTGGTTGTCTCC 61.266 63.158 0.00 0.00 37.67 3.71
608 609 0.893727 ATGGGCCGTTTGGTTGTCTC 60.894 55.000 0.00 0.00 37.67 3.36
609 610 0.402504 TATGGGCCGTTTGGTTGTCT 59.597 50.000 2.17 0.00 37.67 3.41
610 611 1.249407 TTATGGGCCGTTTGGTTGTC 58.751 50.000 2.17 0.00 37.67 3.18
611 612 1.705873 TTTATGGGCCGTTTGGTTGT 58.294 45.000 2.17 0.00 37.67 3.32
612 613 2.821991 TTTTATGGGCCGTTTGGTTG 57.178 45.000 2.17 0.00 37.67 3.77
629 630 6.639632 TGTTTATGCTCTTGCTCTCTTTTT 57.360 33.333 0.00 0.00 40.48 1.94
630 631 6.432162 TGATGTTTATGCTCTTGCTCTCTTTT 59.568 34.615 0.00 0.00 40.48 2.27
631 632 5.942236 TGATGTTTATGCTCTTGCTCTCTTT 59.058 36.000 0.00 0.00 40.48 2.52
632 633 5.494724 TGATGTTTATGCTCTTGCTCTCTT 58.505 37.500 0.00 0.00 40.48 2.85
633 634 5.095145 TGATGTTTATGCTCTTGCTCTCT 57.905 39.130 0.00 0.00 40.48 3.10
634 635 5.526479 TCATGATGTTTATGCTCTTGCTCTC 59.474 40.000 0.00 0.00 40.48 3.20
635 636 5.434408 TCATGATGTTTATGCTCTTGCTCT 58.566 37.500 0.00 0.00 40.48 4.09
636 637 5.526479 TCTCATGATGTTTATGCTCTTGCTC 59.474 40.000 0.00 0.00 40.48 4.26
637 638 5.434408 TCTCATGATGTTTATGCTCTTGCT 58.566 37.500 0.00 0.00 40.48 3.91
638 639 5.746307 TCTCATGATGTTTATGCTCTTGC 57.254 39.130 0.00 0.00 40.20 4.01
639 640 8.155821 AGATTCTCATGATGTTTATGCTCTTG 57.844 34.615 0.00 0.00 0.00 3.02
640 641 8.749026 AAGATTCTCATGATGTTTATGCTCTT 57.251 30.769 0.00 0.00 0.00 2.85
641 642 9.842775 TTAAGATTCTCATGATGTTTATGCTCT 57.157 29.630 0.00 0.00 0.00 4.09
695 696 9.754382 GCATCATGTAATTCTGTTGGATATTTT 57.246 29.630 0.00 0.00 0.00 1.82
696 697 8.916062 TGCATCATGTAATTCTGTTGGATATTT 58.084 29.630 0.00 0.00 0.00 1.40
697 698 8.467963 TGCATCATGTAATTCTGTTGGATATT 57.532 30.769 0.00 0.00 0.00 1.28
698 699 8.520351 CATGCATCATGTAATTCTGTTGGATAT 58.480 33.333 0.00 0.00 37.12 1.63
699 700 7.522562 GCATGCATCATGTAATTCTGTTGGATA 60.523 37.037 14.21 0.00 43.10 2.59
700 701 6.737622 GCATGCATCATGTAATTCTGTTGGAT 60.738 38.462 14.21 0.00 43.10 3.41
701 702 5.450826 GCATGCATCATGTAATTCTGTTGGA 60.451 40.000 14.21 0.00 43.10 3.53
702 703 4.743151 GCATGCATCATGTAATTCTGTTGG 59.257 41.667 14.21 0.00 43.10 3.77
703 704 5.588240 AGCATGCATCATGTAATTCTGTTG 58.412 37.500 21.98 0.00 43.10 3.33
704 705 5.847111 AGCATGCATCATGTAATTCTGTT 57.153 34.783 21.98 0.00 43.10 3.16
705 706 5.126545 ACAAGCATGCATCATGTAATTCTGT 59.873 36.000 21.98 0.00 43.10 3.41
706 707 5.588240 ACAAGCATGCATCATGTAATTCTG 58.412 37.500 21.98 0.00 43.10 3.02
707 708 5.847111 ACAAGCATGCATCATGTAATTCT 57.153 34.783 21.98 0.00 43.10 2.40
708 709 5.622448 CGTACAAGCATGCATCATGTAATTC 59.378 40.000 21.98 10.18 43.10 2.17
709 710 5.296531 TCGTACAAGCATGCATCATGTAATT 59.703 36.000 21.98 0.00 43.10 1.40
710 711 4.815846 TCGTACAAGCATGCATCATGTAAT 59.184 37.500 21.98 0.00 43.10 1.89
711 712 4.187694 TCGTACAAGCATGCATCATGTAA 58.812 39.130 21.98 6.82 43.10 2.41
712 713 3.791245 TCGTACAAGCATGCATCATGTA 58.209 40.909 21.98 18.63 43.10 2.29
713 714 2.631267 TCGTACAAGCATGCATCATGT 58.369 42.857 21.98 19.61 43.10 3.21
714 715 3.181508 TGTTCGTACAAGCATGCATCATG 60.182 43.478 21.98 14.95 43.91 3.07
715 716 3.009026 TGTTCGTACAAGCATGCATCAT 58.991 40.909 21.98 4.68 0.00 2.45
716 717 2.159430 GTGTTCGTACAAGCATGCATCA 59.841 45.455 21.98 0.00 35.69 3.07
717 718 2.476185 GGTGTTCGTACAAGCATGCATC 60.476 50.000 21.98 4.13 35.69 3.91
718 719 1.468520 GGTGTTCGTACAAGCATGCAT 59.531 47.619 21.98 4.57 35.69 3.96
725 726 1.956297 TTGGGTGGTGTTCGTACAAG 58.044 50.000 0.00 0.00 35.69 3.16
727 728 1.270947 GGATTGGGTGGTGTTCGTACA 60.271 52.381 0.00 0.00 0.00 2.90
753 754 3.119137 GGTGCACCAATCATTTTACTCCC 60.119 47.826 31.23 0.00 35.64 4.30
754 755 3.119137 GGGTGCACCAATCATTTTACTCC 60.119 47.826 35.78 10.60 39.85 3.85
755 756 4.110036 GGGTGCACCAATCATTTTACTC 57.890 45.455 35.78 11.05 39.85 2.59
777 778 0.413037 TGGGATTCCATTTGCTGGGT 59.587 50.000 4.80 0.00 45.98 4.51
787 788 4.467084 GGCGCGACTGGGATTCCA 62.467 66.667 12.10 0.00 41.58 3.53
805 806 7.416777 GGGAATTTTAGATTCGATTTGGAGCTT 60.417 37.037 0.00 0.00 0.00 3.74
865 878 1.605738 AACCACGGGAGCGTCTAGT 60.606 57.895 0.00 0.00 0.00 2.57
868 881 4.003788 CCAACCACGGGAGCGTCT 62.004 66.667 0.00 0.00 0.00 4.18
874 887 2.838693 TGACGACCAACCACGGGA 60.839 61.111 0.00 0.00 0.00 5.14
923 941 1.080434 GGTGTCGCTCGCTTCTTCT 60.080 57.895 0.00 0.00 0.00 2.85
932 962 1.248785 TAGACTGGGTGGTGTCGCTC 61.249 60.000 0.00 0.00 38.16 5.03
933 963 1.228769 TAGACTGGGTGGTGTCGCT 60.229 57.895 0.00 0.00 38.16 4.93
934 964 1.215647 CTAGACTGGGTGGTGTCGC 59.784 63.158 0.00 0.00 38.16 5.19
935 965 0.243907 CACTAGACTGGGTGGTGTCG 59.756 60.000 0.00 0.00 38.16 4.35
936 966 1.272769 GACACTAGACTGGGTGGTGTC 59.727 57.143 10.74 10.74 45.90 3.67
937 967 1.133136 AGACACTAGACTGGGTGGTGT 60.133 52.381 0.00 0.00 42.68 4.16
938 968 1.546476 GAGACACTAGACTGGGTGGTG 59.454 57.143 0.00 0.00 37.72 4.17
939 969 1.550409 GGAGACACTAGACTGGGTGGT 60.550 57.143 0.00 0.00 37.72 4.16
940 970 1.187087 GGAGACACTAGACTGGGTGG 58.813 60.000 0.00 0.00 37.72 4.61
941 971 2.096248 GAGGAGACACTAGACTGGGTG 58.904 57.143 0.00 8.29 39.13 4.61
942 972 1.006162 GGAGGAGACACTAGACTGGGT 59.994 57.143 0.00 0.00 0.00 4.51
943 973 1.770294 GGAGGAGACACTAGACTGGG 58.230 60.000 0.00 0.00 0.00 4.45
944 974 1.340211 ACGGAGGAGACACTAGACTGG 60.340 57.143 0.00 0.00 0.00 4.00
945 975 2.011222 GACGGAGGAGACACTAGACTG 58.989 57.143 0.00 0.00 0.00 3.51
946 976 1.065272 GGACGGAGGAGACACTAGACT 60.065 57.143 0.00 0.00 0.00 3.24
950 980 0.392193 GACGGACGGAGGAGACACTA 60.392 60.000 0.00 0.00 0.00 2.74
995 1070 1.511850 CTGAAGGCGTGACATTGTCA 58.488 50.000 15.41 15.41 40.50 3.58
1031 1106 1.134521 TGGCGTGTGAAGAAACAGAGT 60.135 47.619 0.00 0.00 0.00 3.24
1035 1110 0.375454 CGTTGGCGTGTGAAGAAACA 59.625 50.000 0.00 0.00 0.00 2.83
1041 1116 2.108157 AGCTCGTTGGCGTGTGAA 59.892 55.556 0.00 0.00 39.49 3.18
1066 1141 0.112995 TGCAGATGGCCTTGGAGTTT 59.887 50.000 3.32 0.00 43.89 2.66
1084 1164 2.575993 CCTGAGCGTCCTGGAGTG 59.424 66.667 0.00 0.00 0.00 3.51
1107 1187 1.831389 CGAACAGTTGGTGCACGAGG 61.831 60.000 11.45 3.33 32.13 4.63
1112 1192 0.460459 TTCGTCGAACAGTTGGTGCA 60.460 50.000 2.90 0.00 0.00 4.57
1204 1284 2.659063 CGGTGCAGATGGTGGAGGA 61.659 63.158 0.00 0.00 0.00 3.71
1377 1460 2.611473 CGTCTTGATGCCTGTCTTGAGT 60.611 50.000 0.00 0.00 0.00 3.41
1570 1653 2.192979 GGCCATCATCCGGAGCAA 59.807 61.111 11.34 0.00 0.00 3.91
1678 1761 3.958147 TGCATCATTTCATGGAGCAGATT 59.042 39.130 0.00 0.00 36.22 2.40
1773 1856 2.897969 TCGAAGAACTACCTCTGCCTTT 59.102 45.455 0.00 0.00 0.00 3.11
1785 1868 7.012704 CCATTATGAACCATTGATCGAAGAACT 59.987 37.037 0.00 0.00 43.58 3.01
1830 1913 6.997655 TCCTTGGATCAAGCTACTATATGTG 58.002 40.000 0.00 0.00 39.85 3.21
1901 1984 1.542492 ACTGCCTTGGCTTCTCATTG 58.458 50.000 13.18 0.00 0.00 2.82
1917 2000 1.732941 TAACAACGCCTGGCATACTG 58.267 50.000 20.29 11.59 0.00 2.74
1986 10535 5.105567 TGGAGTAAAATATTTCCTCGGCA 57.894 39.130 15.95 10.02 0.00 5.69
2004 10553 3.831883 CCATTCACGGCCATGGAG 58.168 61.111 18.40 11.25 42.49 3.86
2047 10596 2.295349 CGTACCCGTGGAGCATAATAGT 59.705 50.000 0.00 0.00 0.00 2.12
2061 10610 2.422832 GGATCCTTCTATAGCGTACCCG 59.577 54.545 3.84 0.00 37.07 5.28
2209 10758 3.057736 CCCTGCTTCAACATGTCTTCAAG 60.058 47.826 0.00 0.33 0.00 3.02
2352 10901 3.829886 ACCATGCACATGTAAACTTCG 57.170 42.857 9.63 0.00 37.11 3.79
2456 11005 4.075682 TGTTCATCAATTACCTTTCCGCA 58.924 39.130 0.00 0.00 0.00 5.69
2586 11308 7.332926 CCAACTGATATCATAGCATCAAGTACC 59.667 40.741 5.72 0.00 31.04 3.34
2674 11968 7.383572 CAGGATAACAACACATCTAGAGCATAC 59.616 40.741 0.00 0.00 0.00 2.39
2972 12275 5.389935 CGAAAGACAGCAATAACTCTCAACC 60.390 44.000 0.00 0.00 0.00 3.77
3114 13764 9.988815 GGAAGAAGAACTCAGCTAATAATATCA 57.011 33.333 0.00 0.00 0.00 2.15
3132 13785 1.130054 AGGTGCTGCCAGGAAGAAGA 61.130 55.000 0.00 0.00 40.61 2.87
3133 13786 0.251077 AAGGTGCTGCCAGGAAGAAG 60.251 55.000 0.00 0.00 40.61 2.85
3134 13787 0.538057 CAAGGTGCTGCCAGGAAGAA 60.538 55.000 0.00 0.00 40.61 2.52
3270 13925 5.336134 CCATGATGTCTTCATTGCTCAAACA 60.336 40.000 0.00 0.00 42.62 2.83
3376 17755 1.475034 GGCACTTCACACAGAGGACAA 60.475 52.381 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.