Multiple sequence alignment - TraesCS6B01G127300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G127300 chr6B 100.000 5711 0 0 1 5711 122972103 122966393 0.000000e+00 10547.0
1 TraesCS6B01G127300 chr6B 83.959 293 34 7 4296 4575 123414776 123415068 9.430000e-68 268.0
2 TraesCS6B01G127300 chr6B 80.545 257 30 7 3662 3915 123015597 123015836 4.550000e-41 180.0
3 TraesCS6B01G127300 chr6B 90.805 87 7 1 4124 4209 123203003 123203089 1.300000e-21 115.0
4 TraesCS6B01G127300 chr6B 92.308 78 6 0 4653 4730 123203958 123204035 1.680000e-20 111.0
5 TraesCS6B01G127300 chr6B 92.308 78 6 0 4653 4730 123415097 123415174 1.680000e-20 111.0
6 TraesCS6B01G127300 chr6A 96.293 3804 85 28 1358 5130 66433573 66429795 0.000000e+00 6192.0
7 TraesCS6B01G127300 chr6A 97.273 440 8 3 5272 5711 66426113 66425678 0.000000e+00 743.0
8 TraesCS6B01G127300 chr6A 94.795 365 15 3 778 1138 66434045 66433681 2.990000e-157 566.0
9 TraesCS6B01G127300 chr6A 95.640 344 13 1 4762 5103 66426998 66426655 8.360000e-153 551.0
10 TraesCS6B01G127300 chr6A 93.531 371 14 3 4762 5130 66429059 66428697 1.400000e-150 544.0
11 TraesCS6B01G127300 chr6A 93.567 342 12 4 4791 5130 66428072 66427739 8.540000e-138 501.0
12 TraesCS6B01G127300 chr6A 93.676 253 12 2 5036 5286 66427688 66427438 5.400000e-100 375.0
13 TraesCS6B01G127300 chr6A 93.651 252 14 1 5037 5286 66428723 66428472 5.400000e-100 375.0
14 TraesCS6B01G127300 chr6A 93.254 252 14 2 5037 5286 66426662 66426412 9.040000e-98 368.0
15 TraesCS6B01G127300 chr6A 91.700 253 17 3 5037 5286 66429754 66429503 1.180000e-91 348.0
16 TraesCS6B01G127300 chr6A 96.809 94 3 0 5037 5130 66429821 66429728 2.130000e-34 158.0
17 TraesCS6B01G127300 chr6A 84.211 133 4 7 432 558 66434523 66434402 4.680000e-21 113.0
18 TraesCS6B01G127300 chr6A 92.308 78 6 0 4653 4730 66811800 66811877 1.680000e-20 111.0
19 TraesCS6B01G127300 chr6A 89.024 82 9 0 4494 4575 66811690 66811771 1.010000e-17 102.0
20 TraesCS6B01G127300 chr6A 96.078 51 2 0 292 342 66434696 66434646 3.670000e-12 84.2
21 TraesCS6B01G127300 chr6D 97.551 3594 64 10 1418 5001 48451226 48454805 0.000000e+00 6128.0
22 TraesCS6B01G127300 chr6D 85.232 799 40 36 429 1193 48450361 48451115 0.000000e+00 750.0
23 TraesCS6B01G127300 chr6D 89.441 322 21 9 5377 5697 48466486 48466795 1.490000e-105 394.0
24 TraesCS6B01G127300 chr6D 88.615 325 27 7 5378 5701 48463900 48464215 2.500000e-103 387.0
25 TraesCS6B01G127300 chr6D 87.543 289 36 0 4287 4575 48158978 48158690 9.170000e-88 335.0
26 TraesCS6B01G127300 chr6D 86.335 322 25 7 4688 5001 48465591 48465901 3.300000e-87 333.0
27 TraesCS6B01G127300 chr6D 94.975 199 8 1 5174 5370 48455045 48455243 1.550000e-80 311.0
28 TraesCS6B01G127300 chr6D 96.629 178 3 2 5510 5687 48457800 48457974 5.600000e-75 292.0
29 TraesCS6B01G127300 chr6D 86.590 261 18 7 4689 4944 48463008 48463256 7.290000e-69 272.0
30 TraesCS6B01G127300 chr6D 95.946 148 5 1 5379 5526 48455459 48455605 7.400000e-59 239.0
31 TraesCS6B01G127300 chr6D 95.146 103 2 3 1189 1291 199210419 199210320 5.920000e-35 159.0
32 TraesCS6B01G127300 chr6D 82.278 158 12 9 292 447 48450182 48450325 7.770000e-24 122.0
33 TraesCS6B01G127300 chr6D 92.308 78 6 0 4653 4730 48158661 48158584 1.680000e-20 111.0
34 TraesCS6B01G127300 chr6D 87.500 88 7 2 3770 3854 48084849 48084763 1.310000e-16 99.0
35 TraesCS6B01G127300 chr4B 96.923 130 4 0 2 131 621843755 621843626 9.630000e-53 219.0
36 TraesCS6B01G127300 chr4B 97.087 103 3 0 5174 5276 142520958 142521060 2.120000e-39 174.0
37 TraesCS6B01G127300 chr4B 98.851 87 1 0 1197 1283 192792746 192792832 7.660000e-34 156.0
38 TraesCS6B01G127300 chr4B 92.157 102 7 1 1195 1296 37193087 37192987 5.960000e-30 143.0
39 TraesCS6B01G127300 chr1A 95.556 135 6 0 2 136 232089173 232089039 3.470000e-52 217.0
40 TraesCS6B01G127300 chr7D 96.875 128 4 0 2 129 511939909 511940036 1.250000e-51 215.0
41 TraesCS6B01G127300 chr7D 84.242 165 19 5 3771 3931 192514192 192514031 2.760000e-33 154.0
42 TraesCS6B01G127300 chr7D 94.737 95 5 0 1198 1292 498229838 498229932 1.280000e-31 148.0
43 TraesCS6B01G127300 chr7D 90.654 107 9 1 1195 1300 167548507 167548401 2.150000e-29 141.0
44 TraesCS6B01G127300 chr4D 96.212 132 4 1 2 133 73211808 73211938 1.250000e-51 215.0
45 TraesCS6B01G127300 chr4D 96.117 103 4 0 5174 5276 100229553 100229655 9.840000e-38 169.0
46 TraesCS6B01G127300 chr4D 90.654 107 6 4 1191 1296 303079251 303079354 7.720000e-29 139.0
47 TraesCS6B01G127300 chr2D 96.154 130 5 0 3 132 76767121 76766992 4.480000e-51 213.0
48 TraesCS6B01G127300 chr2D 94.161 137 7 1 2 138 199858801 199858936 2.090000e-49 207.0
49 TraesCS6B01G127300 chr2B 96.154 130 5 0 2 131 65430293 65430422 4.480000e-51 213.0
50 TraesCS6B01G127300 chr1D 94.891 137 5 2 2 137 483150989 483150854 4.480000e-51 213.0
51 TraesCS6B01G127300 chr1D 90.083 121 10 2 5159 5277 132857789 132857669 7.660000e-34 156.0
52 TraesCS6B01G127300 chr5A 95.489 133 5 1 2 134 400671963 400672094 1.610000e-50 211.0
53 TraesCS6B01G127300 chr3D 94.393 107 6 0 5174 5280 149764725 149764619 1.270000e-36 165.0
54 TraesCS6B01G127300 chr1B 94.898 98 5 0 1192 1289 548535452 548535549 2.760000e-33 154.0
55 TraesCS6B01G127300 chr7B 96.703 91 2 1 1192 1282 428966932 428966843 3.560000e-32 150.0
56 TraesCS6B01G127300 chr7A 93.069 101 4 3 1197 1297 652487197 652487100 1.660000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G127300 chr6B 122966393 122972103 5710 True 10547.000000 10547 100.000000 1 5711 1 chr6B.!!$R1 5710
1 TraesCS6B01G127300 chr6A 66425678 66434696 9018 True 839.861538 6192 93.882923 292 5711 13 chr6A.!!$R1 5419
2 TraesCS6B01G127300 chr6D 48450182 48457974 7792 False 1307.000000 6128 92.101833 292 5687 6 chr6D.!!$F1 5395
3 TraesCS6B01G127300 chr6D 48463008 48466795 3787 False 346.500000 394 87.745250 4688 5701 4 chr6D.!!$F2 1013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.033228 CTGCCGACCCAAATGCAAAA 59.967 50.000 0.0 0.0 32.58 2.44 F
40 41 0.033366 GCCGACCCAAATGCAAAACT 59.967 50.000 0.0 0.0 0.00 2.66 F
84 85 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.0 0.0 34.64 4.68 F
201 202 0.108585 TTTTTCGAGGGTCTGCTGCT 59.891 50.000 0.0 0.0 0.00 4.24 F
202 203 0.108585 TTTTCGAGGGTCTGCTGCTT 59.891 50.000 0.0 0.0 0.00 3.91 F
497 561 0.173481 CGATGAGACCACCACGATGT 59.827 55.000 0.0 0.0 0.00 3.06 F
499 563 0.391661 ATGAGACCACCACGATGTGC 60.392 55.000 0.0 0.0 34.85 4.57 F
1335 1564 0.651031 GCCTGCCGTCGTCTAAATTC 59.349 55.000 0.0 0.0 0.00 2.17 F
1337 1566 1.927174 CCTGCCGTCGTCTAAATTCTG 59.073 52.381 0.0 0.0 0.00 3.02 F
1338 1567 2.607187 CTGCCGTCGTCTAAATTCTGT 58.393 47.619 0.0 0.0 0.00 3.41 F
2352 2628 2.726241 GTGTTGCCTCTTTTCGCATTTC 59.274 45.455 0.0 0.0 34.35 2.17 F
3455 3740 1.215423 GTGGCTACTGGGGATGGAATT 59.785 52.381 0.0 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1388 1.416030 TGTGACTGGCTTAGCTTCACA 59.584 47.619 22.86 22.86 38.94 3.58 R
1688 1962 1.746239 TGGTGTCATCCTGCATGCG 60.746 57.895 14.09 7.87 31.70 4.73 R
2041 2317 4.502259 GGACCTTCTGTGCATACTATCTGG 60.502 50.000 0.00 0.00 34.99 3.86 R
2209 2485 1.674359 TTTCAACCGCTTGAAGCAGA 58.326 45.000 18.22 6.28 45.20 4.26 R
2352 2628 6.766467 AGAACTTTAGAGTACACAAGGTTTGG 59.234 38.462 0.00 0.00 34.21 3.28 R
2447 2723 3.333680 TGAGGAAAAAGGTGGGAATAGCT 59.666 43.478 0.00 0.00 0.00 3.32 R
2464 2740 5.284861 TGTTGCTTGTTAAGTACTGAGGA 57.715 39.130 0.00 0.00 0.00 3.71 R
2669 2947 5.048713 AGTGACCTGCAAATTTAGCACTAAC 60.049 40.000 10.11 7.51 37.02 2.34 R
2987 3269 5.626142 TGATGTACCTTTTGAGCTTTGGTA 58.374 37.500 0.00 0.00 32.74 3.25 R
3331 3615 9.698617 GGACGTGTCACAATTATCTTTTAATAC 57.301 33.333 3.42 0.00 0.00 1.89 R
4398 4684 1.156736 CATTCTTCAGCCGGTTCGTT 58.843 50.000 1.90 0.00 0.00 3.85 R
5492 12177 1.081556 TTTCCCGACATCACATCGCG 61.082 55.000 0.00 0.00 38.27 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.055719 CGCACTGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
33 34 2.568090 GCACTGCCGACCCAAATG 59.432 61.111 0.00 0.00 0.00 2.32
34 35 2.568090 CACTGCCGACCCAAATGC 59.432 61.111 0.00 0.00 0.00 3.56
35 36 2.115052 ACTGCCGACCCAAATGCA 59.885 55.556 0.00 0.00 0.00 3.96
36 37 1.530419 ACTGCCGACCCAAATGCAA 60.530 52.632 0.00 0.00 32.58 4.08
37 38 1.112315 ACTGCCGACCCAAATGCAAA 61.112 50.000 0.00 0.00 32.58 3.68
38 39 0.033228 CTGCCGACCCAAATGCAAAA 59.967 50.000 0.00 0.00 32.58 2.44
39 40 0.249657 TGCCGACCCAAATGCAAAAC 60.250 50.000 0.00 0.00 0.00 2.43
40 41 0.033366 GCCGACCCAAATGCAAAACT 59.967 50.000 0.00 0.00 0.00 2.66
41 42 1.782044 CCGACCCAAATGCAAAACTG 58.218 50.000 0.00 0.00 0.00 3.16
42 43 1.605202 CCGACCCAAATGCAAAACTGG 60.605 52.381 0.00 0.00 0.00 4.00
43 44 1.339610 CGACCCAAATGCAAAACTGGA 59.660 47.619 7.98 0.00 0.00 3.86
44 45 2.754472 GACCCAAATGCAAAACTGGAC 58.246 47.619 7.98 0.00 0.00 4.02
45 46 1.068434 ACCCAAATGCAAAACTGGACG 59.932 47.619 7.98 0.00 0.00 4.79
46 47 1.605202 CCCAAATGCAAAACTGGACGG 60.605 52.381 7.98 0.00 0.00 4.79
47 48 1.339610 CCAAATGCAAAACTGGACGGA 59.660 47.619 0.00 0.00 0.00 4.69
48 49 2.393764 CAAATGCAAAACTGGACGGAC 58.606 47.619 0.00 0.00 0.00 4.79
49 50 0.591170 AATGCAAAACTGGACGGACG 59.409 50.000 0.00 0.00 0.00 4.79
50 51 1.852067 ATGCAAAACTGGACGGACGC 61.852 55.000 0.00 0.00 0.00 5.19
51 52 2.943653 CAAAACTGGACGGACGCC 59.056 61.111 0.00 0.00 0.00 5.68
82 83 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
83 84 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
84 85 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
85 86 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
86 87 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
87 88 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
88 89 1.096416 AAACGGACAAAAAGCGGACA 58.904 45.000 0.00 0.00 0.00 4.02
89 90 1.096416 AACGGACAAAAAGCGGACAA 58.904 45.000 0.00 0.00 0.00 3.18
90 91 1.096416 ACGGACAAAAAGCGGACAAA 58.904 45.000 0.00 0.00 0.00 2.83
91 92 1.679153 ACGGACAAAAAGCGGACAAAT 59.321 42.857 0.00 0.00 0.00 2.32
92 93 2.050691 CGGACAAAAAGCGGACAAATG 58.949 47.619 0.00 0.00 0.00 2.32
93 94 1.792367 GGACAAAAAGCGGACAAATGC 59.208 47.619 0.00 0.00 0.00 3.56
94 95 1.451651 GACAAAAAGCGGACAAATGCG 59.548 47.619 0.00 0.00 43.57 4.73
100 101 4.160635 CGGACAAATGCGCCGTCC 62.161 66.667 19.71 19.71 44.79 4.79
101 102 4.160635 GGACAAATGCGCCGTCCG 62.161 66.667 16.42 0.29 39.86 4.79
102 103 3.419759 GACAAATGCGCCGTCCGT 61.420 61.111 4.18 0.00 39.71 4.69
103 104 2.961669 GACAAATGCGCCGTCCGTT 61.962 57.895 4.18 0.00 39.71 4.44
104 105 2.254051 CAAATGCGCCGTCCGTTT 59.746 55.556 4.18 0.00 39.71 3.60
105 106 1.795962 CAAATGCGCCGTCCGTTTC 60.796 57.895 4.18 0.00 39.71 2.78
106 107 3.303397 AAATGCGCCGTCCGTTTCG 62.303 57.895 4.18 0.00 39.71 3.46
123 124 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
124 125 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
127 128 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
128 129 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
129 130 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
130 131 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
131 132 1.880646 GCCCGTTGGAGTTGCTCTTAA 60.881 52.381 0.00 0.00 0.00 1.85
132 133 2.711542 CCCGTTGGAGTTGCTCTTAAT 58.288 47.619 0.00 0.00 0.00 1.40
133 134 2.678336 CCCGTTGGAGTTGCTCTTAATC 59.322 50.000 0.00 0.00 0.00 1.75
134 135 3.600388 CCGTTGGAGTTGCTCTTAATCT 58.400 45.455 0.00 0.00 0.00 2.40
135 136 4.003648 CCGTTGGAGTTGCTCTTAATCTT 58.996 43.478 0.00 0.00 0.00 2.40
136 137 4.455877 CCGTTGGAGTTGCTCTTAATCTTT 59.544 41.667 0.00 0.00 0.00 2.52
137 138 5.642063 CCGTTGGAGTTGCTCTTAATCTTTA 59.358 40.000 0.00 0.00 0.00 1.85
138 139 6.402226 CCGTTGGAGTTGCTCTTAATCTTTAC 60.402 42.308 0.00 0.00 0.00 2.01
139 140 6.369065 CGTTGGAGTTGCTCTTAATCTTTACT 59.631 38.462 0.00 0.00 0.00 2.24
140 141 7.095187 CGTTGGAGTTGCTCTTAATCTTTACTT 60.095 37.037 0.00 0.00 0.00 2.24
141 142 9.216117 GTTGGAGTTGCTCTTAATCTTTACTTA 57.784 33.333 0.00 0.00 0.00 2.24
142 143 9.787435 TTGGAGTTGCTCTTAATCTTTACTTAA 57.213 29.630 0.00 0.00 0.00 1.85
143 144 9.787435 TGGAGTTGCTCTTAATCTTTACTTAAA 57.213 29.630 0.00 0.00 0.00 1.52
149 150 9.998106 TGCTCTTAATCTTTACTTAAACAGTCT 57.002 29.630 0.00 0.00 36.88 3.24
173 174 6.658188 TTTTTAGGGCTAAAAGCTGCTTAA 57.342 33.333 16.31 6.27 43.36 1.85
174 175 6.658188 TTTTAGGGCTAAAAGCTGCTTAAA 57.342 33.333 16.31 6.94 41.99 1.52
175 176 5.638596 TTAGGGCTAAAAGCTGCTTAAAC 57.361 39.130 16.31 5.76 41.99 2.01
176 177 3.496331 AGGGCTAAAAGCTGCTTAAACA 58.504 40.909 16.31 0.46 41.99 2.83
177 178 3.507622 AGGGCTAAAAGCTGCTTAAACAG 59.492 43.478 16.31 10.95 41.99 3.16
178 179 9.602195 TTTAGGGCTAAAAGCTGCTTAAACAGC 62.602 40.741 20.74 20.74 44.49 4.40
200 201 2.629002 TTTTTCGAGGGTCTGCTGC 58.371 52.632 0.00 0.00 0.00 5.25
201 202 0.108585 TTTTTCGAGGGTCTGCTGCT 59.891 50.000 0.00 0.00 0.00 4.24
202 203 0.108585 TTTTCGAGGGTCTGCTGCTT 59.891 50.000 0.00 0.00 0.00 3.91
203 204 0.973632 TTTCGAGGGTCTGCTGCTTA 59.026 50.000 0.00 0.00 0.00 3.09
204 205 0.973632 TTCGAGGGTCTGCTGCTTAA 59.026 50.000 0.00 0.00 0.00 1.85
205 206 0.973632 TCGAGGGTCTGCTGCTTAAA 59.026 50.000 0.00 0.00 0.00 1.52
206 207 1.079503 CGAGGGTCTGCTGCTTAAAC 58.920 55.000 0.00 0.00 0.00 2.01
207 208 1.608025 CGAGGGTCTGCTGCTTAAACA 60.608 52.381 0.00 0.00 0.00 2.83
208 209 2.079925 GAGGGTCTGCTGCTTAAACAG 58.920 52.381 0.00 1.31 40.80 3.16
209 210 1.421646 AGGGTCTGCTGCTTAAACAGT 59.578 47.619 7.66 0.00 39.96 3.55
210 211 2.158608 AGGGTCTGCTGCTTAAACAGTT 60.159 45.455 7.66 0.00 39.96 3.16
211 212 2.623416 GGGTCTGCTGCTTAAACAGTTT 59.377 45.455 7.66 3.49 39.96 2.66
212 213 3.068165 GGGTCTGCTGCTTAAACAGTTTT 59.932 43.478 3.25 0.00 39.96 2.43
213 214 4.441495 GGGTCTGCTGCTTAAACAGTTTTT 60.441 41.667 3.25 0.00 39.96 1.94
237 238 5.512753 TTTTGAGACATGCTGCTTAAACA 57.487 34.783 0.00 0.00 0.00 2.83
238 239 4.754372 TTGAGACATGCTGCTTAAACAG 57.246 40.909 0.00 1.31 40.80 3.16
239 240 3.743521 TGAGACATGCTGCTTAAACAGT 58.256 40.909 7.66 0.00 39.96 3.55
240 241 3.748048 TGAGACATGCTGCTTAAACAGTC 59.252 43.478 7.66 1.46 39.96 3.51
241 242 3.999663 GAGACATGCTGCTTAAACAGTCT 59.000 43.478 7.66 3.44 39.96 3.24
242 243 4.392940 AGACATGCTGCTTAAACAGTCTT 58.607 39.130 7.66 0.00 39.96 3.01
243 244 4.823989 AGACATGCTGCTTAAACAGTCTTT 59.176 37.500 7.66 0.00 39.96 2.52
244 245 5.300286 AGACATGCTGCTTAAACAGTCTTTT 59.700 36.000 7.66 0.00 39.96 2.27
245 246 5.906073 ACATGCTGCTTAAACAGTCTTTTT 58.094 33.333 7.66 0.00 39.96 1.94
264 265 2.965572 TTTTTGAGTGCTTGCTGCTT 57.034 40.000 0.00 0.00 43.37 3.91
266 267 4.383850 TTTTTGAGTGCTTGCTGCTTAA 57.616 36.364 0.00 0.00 43.37 1.85
267 268 4.383850 TTTTGAGTGCTTGCTGCTTAAA 57.616 36.364 0.00 0.10 43.37 1.52
268 269 3.354089 TTGAGTGCTTGCTGCTTAAAC 57.646 42.857 0.00 0.00 43.37 2.01
269 270 2.296792 TGAGTGCTTGCTGCTTAAACA 58.703 42.857 0.00 0.00 43.37 2.83
270 271 2.291465 TGAGTGCTTGCTGCTTAAACAG 59.709 45.455 0.00 1.31 43.37 3.16
271 272 2.291741 GAGTGCTTGCTGCTTAAACAGT 59.708 45.455 7.66 0.00 43.37 3.55
272 273 2.291741 AGTGCTTGCTGCTTAAACAGTC 59.708 45.455 7.66 1.46 43.37 3.51
273 274 2.033299 GTGCTTGCTGCTTAAACAGTCA 59.967 45.455 7.66 3.84 43.37 3.41
274 275 2.291465 TGCTTGCTGCTTAAACAGTCAG 59.709 45.455 7.66 5.23 43.37 3.51
275 276 2.549754 GCTTGCTGCTTAAACAGTCAGA 59.450 45.455 7.66 0.00 39.96 3.27
276 277 3.003689 GCTTGCTGCTTAAACAGTCAGAA 59.996 43.478 7.66 0.00 39.96 3.02
277 278 4.531332 CTTGCTGCTTAAACAGTCAGAAC 58.469 43.478 7.66 0.00 39.96 3.01
278 279 3.540617 TGCTGCTTAAACAGTCAGAACA 58.459 40.909 7.66 0.00 39.96 3.18
279 280 3.561310 TGCTGCTTAAACAGTCAGAACAG 59.439 43.478 7.66 0.00 39.96 3.16
280 281 3.608008 GCTGCTTAAACAGTCAGAACAGC 60.608 47.826 7.66 0.00 40.89 4.40
281 282 2.543848 TGCTTAAACAGTCAGAACAGCG 59.456 45.455 0.00 0.00 0.00 5.18
282 283 2.800544 GCTTAAACAGTCAGAACAGCGA 59.199 45.455 0.00 0.00 0.00 4.93
283 284 3.433615 GCTTAAACAGTCAGAACAGCGAT 59.566 43.478 0.00 0.00 0.00 4.58
284 285 4.083802 GCTTAAACAGTCAGAACAGCGATT 60.084 41.667 0.00 0.00 0.00 3.34
285 286 5.560953 GCTTAAACAGTCAGAACAGCGATTT 60.561 40.000 0.00 0.00 0.00 2.17
286 287 4.900635 AAACAGTCAGAACAGCGATTTT 57.099 36.364 0.00 0.00 0.00 1.82
287 288 3.885484 ACAGTCAGAACAGCGATTTTG 57.115 42.857 0.00 0.00 0.00 2.44
288 289 3.206150 ACAGTCAGAACAGCGATTTTGT 58.794 40.909 0.00 0.00 0.00 2.83
289 290 3.248602 ACAGTCAGAACAGCGATTTTGTC 59.751 43.478 0.00 0.00 0.00 3.18
290 291 2.808543 AGTCAGAACAGCGATTTTGTCC 59.191 45.455 0.00 0.00 0.00 4.02
348 349 2.610859 GGGCTGGTGGAGGAGGAA 60.611 66.667 0.00 0.00 0.00 3.36
349 350 2.674220 GGGCTGGTGGAGGAGGAAG 61.674 68.421 0.00 0.00 0.00 3.46
350 351 1.613630 GGCTGGTGGAGGAGGAAGA 60.614 63.158 0.00 0.00 0.00 2.87
372 374 4.038080 GGGTGGAAAAGCGCACCG 62.038 66.667 11.47 0.00 38.18 4.94
406 408 1.215647 CCGACCCGAGACTCCAAAG 59.784 63.158 0.00 0.00 0.00 2.77
407 409 1.533469 CCGACCCGAGACTCCAAAGT 61.533 60.000 0.00 0.00 38.88 2.66
424 426 5.104527 TCCAAAGTGGAAAGTATGGATCGAT 60.105 40.000 0.00 0.00 45.00 3.59
427 429 3.005897 AGTGGAAAGTATGGATCGATCGG 59.994 47.826 18.81 0.00 0.00 4.18
437 440 2.355445 GATCGATCGGGACAGCAGCA 62.355 60.000 16.41 0.00 0.00 4.41
447 450 2.075338 GGACAGCAGCAGAAAGAAGAG 58.925 52.381 0.00 0.00 0.00 2.85
491 555 4.451150 GCGGCGATGAGACCACCA 62.451 66.667 12.98 0.00 0.00 4.17
492 556 2.509336 CGGCGATGAGACCACCAC 60.509 66.667 0.00 0.00 0.00 4.16
493 557 2.509336 GGCGATGAGACCACCACG 60.509 66.667 0.00 0.00 0.00 4.94
494 558 2.571757 GCGATGAGACCACCACGA 59.428 61.111 0.00 0.00 0.00 4.35
495 559 1.141881 GCGATGAGACCACCACGAT 59.858 57.895 0.00 0.00 0.00 3.73
496 560 1.148157 GCGATGAGACCACCACGATG 61.148 60.000 0.00 0.00 0.00 3.84
497 561 0.173481 CGATGAGACCACCACGATGT 59.827 55.000 0.00 0.00 0.00 3.06
498 562 1.645034 GATGAGACCACCACGATGTG 58.355 55.000 0.00 0.00 35.98 3.21
499 563 0.391661 ATGAGACCACCACGATGTGC 60.392 55.000 0.00 0.00 34.85 4.57
500 564 1.741770 GAGACCACCACGATGTGCC 60.742 63.158 0.00 0.00 34.85 5.01
501 565 2.172483 GAGACCACCACGATGTGCCT 62.172 60.000 0.00 0.00 34.85 4.75
502 566 1.741770 GACCACCACGATGTGCCTC 60.742 63.158 0.00 0.00 34.85 4.70
573 648 2.727454 TCAATTCTTTCCCTTTCCCCCT 59.273 45.455 0.00 0.00 0.00 4.79
574 649 3.099905 CAATTCTTTCCCTTTCCCCCTC 58.900 50.000 0.00 0.00 0.00 4.30
577 652 0.851332 CTTTCCCTTTCCCCCTCCCT 60.851 60.000 0.00 0.00 0.00 4.20
578 653 0.849540 TTTCCCTTTCCCCCTCCCTC 60.850 60.000 0.00 0.00 0.00 4.30
583 658 3.596459 TTTCCCCCTCCCTCCCCTG 62.596 68.421 0.00 0.00 0.00 4.45
731 808 2.266055 CTCAACTCTCACCCCGCC 59.734 66.667 0.00 0.00 0.00 6.13
732 809 2.525629 TCAACTCTCACCCCGCCA 60.526 61.111 0.00 0.00 0.00 5.69
943 1156 2.036733 CTCCGTGGTTCTTTACTGACCA 59.963 50.000 0.00 0.00 0.00 4.02
944 1157 2.036733 TCCGTGGTTCTTTACTGACCAG 59.963 50.000 0.00 0.00 0.00 4.00
967 1180 2.486191 CCAATCTCTGCGCCTCCTATTT 60.486 50.000 4.18 0.00 0.00 1.40
1138 1354 2.368221 AGTTGCAGCTCTCTTTCTCACT 59.632 45.455 0.00 0.00 0.00 3.41
1156 1385 4.370049 TCACTGCATGTTTCAACAAATGG 58.630 39.130 0.00 0.00 43.03 3.16
1158 1387 3.181463 ACTGCATGTTTCAACAAATGGCT 60.181 39.130 0.00 0.00 43.03 4.75
1159 1388 3.806380 TGCATGTTTCAACAAATGGCTT 58.194 36.364 0.00 0.00 43.03 4.35
1187 1416 4.022849 AGCTAAGCCAGTCACAAATGTTTC 60.023 41.667 0.00 0.00 0.00 2.78
1188 1417 4.022849 GCTAAGCCAGTCACAAATGTTTCT 60.023 41.667 0.00 0.00 0.00 2.52
1189 1418 3.996150 AGCCAGTCACAAATGTTTCTG 57.004 42.857 7.39 7.39 0.00 3.02
1190 1419 3.290710 AGCCAGTCACAAATGTTTCTGT 58.709 40.909 11.28 0.00 0.00 3.41
1191 1420 4.460263 AGCCAGTCACAAATGTTTCTGTA 58.540 39.130 11.28 0.00 0.00 2.74
1193 1422 5.009010 AGCCAGTCACAAATGTTTCTGTAAG 59.991 40.000 11.28 2.14 0.00 2.34
1194 1423 5.221048 GCCAGTCACAAATGTTTCTGTAAGT 60.221 40.000 11.28 0.00 33.76 2.24
1195 1424 6.017440 GCCAGTCACAAATGTTTCTGTAAGTA 60.017 38.462 11.28 0.00 33.76 2.24
1196 1425 7.576236 CCAGTCACAAATGTTTCTGTAAGTAG 58.424 38.462 11.28 0.00 33.76 2.57
1197 1426 7.226720 CCAGTCACAAATGTTTCTGTAAGTAGT 59.773 37.037 11.28 0.00 33.76 2.73
1198 1427 9.256477 CAGTCACAAATGTTTCTGTAAGTAGTA 57.744 33.333 6.59 0.00 33.76 1.82
1199 1428 9.257651 AGTCACAAATGTTTCTGTAAGTAGTAC 57.742 33.333 0.00 0.00 33.76 2.73
1200 1429 9.257651 GTCACAAATGTTTCTGTAAGTAGTACT 57.742 33.333 0.00 0.00 33.46 2.73
1201 1430 9.472361 TCACAAATGTTTCTGTAAGTAGTACTC 57.528 33.333 2.58 0.00 33.46 2.59
1202 1431 8.709646 CACAAATGTTTCTGTAAGTAGTACTCC 58.290 37.037 2.58 0.00 33.46 3.85
1203 1432 7.876582 ACAAATGTTTCTGTAAGTAGTACTCCC 59.123 37.037 2.58 0.00 33.46 4.30
1204 1433 7.793948 AATGTTTCTGTAAGTAGTACTCCCT 57.206 36.000 2.58 0.00 33.46 4.20
1205 1434 6.830873 TGTTTCTGTAAGTAGTACTCCCTC 57.169 41.667 2.58 0.00 33.46 4.30
1206 1435 5.713861 TGTTTCTGTAAGTAGTACTCCCTCC 59.286 44.000 2.58 0.00 33.46 4.30
1207 1436 4.148128 TCTGTAAGTAGTACTCCCTCCG 57.852 50.000 2.58 0.00 33.46 4.63
1208 1437 3.521126 TCTGTAAGTAGTACTCCCTCCGT 59.479 47.826 2.58 0.00 33.46 4.69
1209 1438 4.716784 TCTGTAAGTAGTACTCCCTCCGTA 59.283 45.833 2.58 0.00 33.46 4.02
1210 1439 5.189736 TCTGTAAGTAGTACTCCCTCCGTAA 59.810 44.000 2.58 0.00 33.46 3.18
1211 1440 5.815581 TGTAAGTAGTACTCCCTCCGTAAA 58.184 41.667 2.58 0.00 33.46 2.01
1212 1441 5.882557 TGTAAGTAGTACTCCCTCCGTAAAG 59.117 44.000 2.58 0.00 33.46 1.85
1213 1442 4.851639 AGTAGTACTCCCTCCGTAAAGA 57.148 45.455 0.00 0.00 0.00 2.52
1214 1443 5.184892 AGTAGTACTCCCTCCGTAAAGAA 57.815 43.478 0.00 0.00 0.00 2.52
1215 1444 5.574188 AGTAGTACTCCCTCCGTAAAGAAA 58.426 41.667 0.00 0.00 0.00 2.52
1216 1445 6.193504 AGTAGTACTCCCTCCGTAAAGAAAT 58.806 40.000 0.00 0.00 0.00 2.17
1217 1446 7.349598 AGTAGTACTCCCTCCGTAAAGAAATA 58.650 38.462 0.00 0.00 0.00 1.40
1218 1447 8.003629 AGTAGTACTCCCTCCGTAAAGAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
1219 1448 9.289782 GTAGTACTCCCTCCGTAAAGAAATATA 57.710 37.037 0.00 0.00 0.00 0.86
1220 1449 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1221 1450 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1222 1451 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1223 1452 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1224 1453 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1225 1454 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
1226 1455 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
1227 1456 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
1228 1457 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1229 1458 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
1230 1459 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
1231 1460 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
1243 1472 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
1244 1473 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
1260 1489 9.298250 ACTAAAGTAGTGATCTAAACACTCTCA 57.702 33.333 0.00 0.00 45.58 3.27
1268 1497 9.950496 AGTGATCTAAACACTCTCATATTTGTT 57.050 29.630 0.00 0.00 43.84 2.83
1276 1505 8.553459 AACACTCTCATATTTGTTTACAGAGG 57.447 34.615 0.00 0.00 0.00 3.69
1277 1506 7.106239 ACACTCTCATATTTGTTTACAGAGGG 58.894 38.462 0.00 0.00 0.00 4.30
1278 1507 7.038302 ACACTCTCATATTTGTTTACAGAGGGA 60.038 37.037 7.69 0.00 0.00 4.20
1279 1508 7.493971 CACTCTCATATTTGTTTACAGAGGGAG 59.506 40.741 0.00 0.00 0.00 4.30
1280 1509 7.181125 ACTCTCATATTTGTTTACAGAGGGAGT 59.819 37.037 0.00 0.00 0.00 3.85
1281 1510 8.603898 TCTCATATTTGTTTACAGAGGGAGTA 57.396 34.615 0.00 0.00 0.00 2.59
1282 1511 9.042450 TCTCATATTTGTTTACAGAGGGAGTAA 57.958 33.333 0.00 0.00 0.00 2.24
1283 1512 9.838339 CTCATATTTGTTTACAGAGGGAGTAAT 57.162 33.333 0.00 0.00 32.07 1.89
1288 1517 7.549147 TTGTTTACAGAGGGAGTAATACAGT 57.451 36.000 0.00 0.00 32.07 3.55
1289 1518 8.654485 TTGTTTACAGAGGGAGTAATACAGTA 57.346 34.615 0.00 0.00 32.07 2.74
1290 1519 8.654485 TGTTTACAGAGGGAGTAATACAGTAA 57.346 34.615 0.00 0.00 32.07 2.24
1291 1520 9.263446 TGTTTACAGAGGGAGTAATACAGTAAT 57.737 33.333 0.00 0.00 32.07 1.89
1335 1564 0.651031 GCCTGCCGTCGTCTAAATTC 59.349 55.000 0.00 0.00 0.00 2.17
1337 1566 1.927174 CCTGCCGTCGTCTAAATTCTG 59.073 52.381 0.00 0.00 0.00 3.02
1338 1567 2.607187 CTGCCGTCGTCTAAATTCTGT 58.393 47.619 0.00 0.00 0.00 3.41
1339 1568 3.428452 CCTGCCGTCGTCTAAATTCTGTA 60.428 47.826 0.00 0.00 0.00 2.74
1343 1572 4.624452 GCCGTCGTCTAAATTCTGTAAAGT 59.376 41.667 0.00 0.00 0.00 2.66
1412 1660 8.734386 TCTTAATTCCTCATCTTTCTTTTCTGC 58.266 33.333 0.00 0.00 0.00 4.26
1416 1664 5.624159 TCCTCATCTTTCTTTTCTGCTGAA 58.376 37.500 1.33 1.33 0.00 3.02
1465 1735 7.739825 TCTAGTGGATCCATCTAAGAAATTGG 58.260 38.462 19.62 7.06 0.00 3.16
1562 1836 3.492313 CGGTCTTCATTGTTTAAGCTGC 58.508 45.455 0.00 0.00 0.00 5.25
1688 1962 3.791586 GAGCCTCTGCCCTCCCAC 61.792 72.222 0.00 0.00 38.69 4.61
2209 2485 5.629125 ACTGGAAAAGAGATTGAAAGAGCT 58.371 37.500 0.00 0.00 0.00 4.09
2245 2521 6.847792 CGGTTGAAAATGATGAGAACATATCG 59.152 38.462 0.00 0.00 36.82 2.92
2310 2586 6.015856 CAGGTTGGTATTTGTGGTTTGTATGA 60.016 38.462 0.00 0.00 0.00 2.15
2352 2628 2.726241 GTGTTGCCTCTTTTCGCATTTC 59.274 45.455 0.00 0.00 34.35 2.17
2464 2740 6.731467 TGAATAGAGCTATTCCCACCTTTTT 58.269 36.000 21.33 0.00 46.64 1.94
2466 2742 3.969553 AGAGCTATTCCCACCTTTTTCC 58.030 45.455 0.00 0.00 0.00 3.13
2467 2743 3.593780 AGAGCTATTCCCACCTTTTTCCT 59.406 43.478 0.00 0.00 0.00 3.36
2469 2745 3.333680 AGCTATTCCCACCTTTTTCCTCA 59.666 43.478 0.00 0.00 0.00 3.86
2470 2746 3.696548 GCTATTCCCACCTTTTTCCTCAG 59.303 47.826 0.00 0.00 0.00 3.35
2471 2747 3.903530 ATTCCCACCTTTTTCCTCAGT 57.096 42.857 0.00 0.00 0.00 3.41
2757 3039 8.539117 AGCTGGACCTAATTTTTGCTATTATT 57.461 30.769 0.00 0.00 0.00 1.40
2823 3105 5.012354 TGGATTTTGTTACTCGAGTTACCCT 59.988 40.000 26.73 12.08 0.00 4.34
2987 3269 4.080582 TGTTACGGAGTGGATTCATTGGAT 60.081 41.667 0.00 0.00 45.73 3.41
3249 3533 3.421844 GGTATTTCAAGCACCCAGTCTT 58.578 45.455 0.00 0.00 0.00 3.01
3331 3615 4.108699 ACACCATATGTTTTGAATGCCG 57.891 40.909 1.24 0.00 38.98 5.69
3359 3643 9.661563 ATTAAAAGATAATTGTGACACGTCCTA 57.338 29.630 0.22 0.00 0.00 2.94
3366 3650 5.801350 ATTGTGACACGTCCTATGATTTG 57.199 39.130 0.22 0.00 0.00 2.32
3455 3740 1.215423 GTGGCTACTGGGGATGGAATT 59.785 52.381 0.00 0.00 0.00 2.17
4398 4684 1.026182 ACGTCGGTATAGTGCGGTCA 61.026 55.000 0.00 0.00 0.00 4.02
4500 4786 2.679342 GCCTGCCACAGTGGGGATA 61.679 63.158 18.10 1.47 38.19 2.59
4742 5029 3.298619 CATATCATGGAGTTTTGGGGCA 58.701 45.455 0.00 0.00 0.00 5.36
4743 5030 2.555732 ATCATGGAGTTTTGGGGCAT 57.444 45.000 0.00 0.00 0.00 4.40
4744 5031 1.559368 TCATGGAGTTTTGGGGCATG 58.441 50.000 0.00 0.00 0.00 4.06
4745 5032 1.076841 TCATGGAGTTTTGGGGCATGA 59.923 47.619 0.00 0.00 0.00 3.07
4747 5034 1.631405 TGGAGTTTTGGGGCATGAAG 58.369 50.000 0.00 0.00 0.00 3.02
4748 5035 1.146774 TGGAGTTTTGGGGCATGAAGA 59.853 47.619 0.00 0.00 0.00 2.87
4749 5036 2.225343 TGGAGTTTTGGGGCATGAAGAT 60.225 45.455 0.00 0.00 0.00 2.40
4751 5038 3.118992 GGAGTTTTGGGGCATGAAGATTC 60.119 47.826 0.00 0.00 0.00 2.52
4752 5039 3.509442 AGTTTTGGGGCATGAAGATTCA 58.491 40.909 0.00 0.00 42.14 2.57
4754 5041 4.533311 AGTTTTGGGGCATGAAGATTCATT 59.467 37.500 5.32 0.00 45.13 2.57
4755 5042 5.721000 AGTTTTGGGGCATGAAGATTCATTA 59.279 36.000 5.32 0.00 45.13 1.90
4756 5043 6.213195 AGTTTTGGGGCATGAAGATTCATTAA 59.787 34.615 5.32 0.00 45.13 1.40
4757 5044 6.811634 TTTGGGGCATGAAGATTCATTAAT 57.188 33.333 5.32 0.00 45.13 1.40
4758 5045 6.811634 TTGGGGCATGAAGATTCATTAATT 57.188 33.333 5.32 0.00 45.13 1.40
4759 5046 6.811634 TGGGGCATGAAGATTCATTAATTT 57.188 33.333 5.32 0.00 45.13 1.82
4760 5047 7.911130 TGGGGCATGAAGATTCATTAATTTA 57.089 32.000 5.32 0.00 45.13 1.40
4969 8941 5.471456 GTGGTTGGGATCATGTTCTGATATC 59.529 44.000 3.86 0.00 44.83 1.63
5003 9936 5.181748 AGGACTGCAGATGATTTGTACTTC 58.818 41.667 23.35 1.82 0.00 3.01
5029 9964 9.010029 CATTCCTACGCCCATTTAATAATACTT 57.990 33.333 0.00 0.00 0.00 2.24
5164 10238 6.780457 ACTCCCATTCAAACTTGATATTGG 57.220 37.500 8.54 8.54 37.00 3.16
5492 12177 6.481644 AGAGATTGAAGAACTTGACAAGTCAC 59.518 38.462 20.81 16.77 41.91 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.055719 ATTTGGGTCGGCAGTGCG 61.056 61.111 9.45 4.79 0.00 5.34
16 17 2.568090 CATTTGGGTCGGCAGTGC 59.432 61.111 6.55 6.55 0.00 4.40
17 18 1.804396 TTGCATTTGGGTCGGCAGTG 61.804 55.000 0.00 0.00 37.59 3.66
18 19 1.112315 TTTGCATTTGGGTCGGCAGT 61.112 50.000 0.00 0.00 37.59 4.40
19 20 0.033228 TTTTGCATTTGGGTCGGCAG 59.967 50.000 0.00 0.00 37.59 4.85
20 21 0.249657 GTTTTGCATTTGGGTCGGCA 60.250 50.000 0.00 0.00 0.00 5.69
21 22 0.033366 AGTTTTGCATTTGGGTCGGC 59.967 50.000 0.00 0.00 0.00 5.54
22 23 1.605202 CCAGTTTTGCATTTGGGTCGG 60.605 52.381 0.00 0.00 0.00 4.79
23 24 1.339610 TCCAGTTTTGCATTTGGGTCG 59.660 47.619 0.00 0.00 0.00 4.79
24 25 2.754472 GTCCAGTTTTGCATTTGGGTC 58.246 47.619 0.00 0.00 0.00 4.46
25 26 1.068434 CGTCCAGTTTTGCATTTGGGT 59.932 47.619 0.00 0.00 0.00 4.51
26 27 1.605202 CCGTCCAGTTTTGCATTTGGG 60.605 52.381 0.00 0.00 0.00 4.12
27 28 1.339610 TCCGTCCAGTTTTGCATTTGG 59.660 47.619 0.00 0.00 0.00 3.28
28 29 2.393764 GTCCGTCCAGTTTTGCATTTG 58.606 47.619 0.00 0.00 0.00 2.32
29 30 1.001815 CGTCCGTCCAGTTTTGCATTT 60.002 47.619 0.00 0.00 0.00 2.32
30 31 0.591170 CGTCCGTCCAGTTTTGCATT 59.409 50.000 0.00 0.00 0.00 3.56
31 32 1.852067 GCGTCCGTCCAGTTTTGCAT 61.852 55.000 0.00 0.00 0.00 3.96
32 33 2.539338 GCGTCCGTCCAGTTTTGCA 61.539 57.895 0.00 0.00 0.00 4.08
33 34 2.251371 GCGTCCGTCCAGTTTTGC 59.749 61.111 0.00 0.00 0.00 3.68
34 35 2.943653 GGCGTCCGTCCAGTTTTG 59.056 61.111 0.00 0.00 0.00 2.44
35 36 2.663852 CGGCGTCCGTCCAGTTTT 60.664 61.111 9.69 0.00 42.73 2.43
36 37 4.675029 CCGGCGTCCGTCCAGTTT 62.675 66.667 15.38 0.00 46.80 2.66
60 61 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
61 62 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
63 64 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
64 65 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
65 66 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
66 67 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
67 68 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
68 69 1.202200 TGTCCGCTTTTTGTCCGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
69 70 1.096416 TGTCCGCTTTTTGTCCGTTT 58.904 45.000 0.00 0.00 0.00 3.60
70 71 1.096416 TTGTCCGCTTTTTGTCCGTT 58.904 45.000 0.00 0.00 0.00 4.44
71 72 1.096416 TTTGTCCGCTTTTTGTCCGT 58.904 45.000 0.00 0.00 0.00 4.69
72 73 2.050691 CATTTGTCCGCTTTTTGTCCG 58.949 47.619 0.00 0.00 0.00 4.79
73 74 1.792367 GCATTTGTCCGCTTTTTGTCC 59.208 47.619 0.00 0.00 0.00 4.02
74 75 1.451651 CGCATTTGTCCGCTTTTTGTC 59.548 47.619 0.00 0.00 0.00 3.18
75 76 1.486439 CGCATTTGTCCGCTTTTTGT 58.514 45.000 0.00 0.00 0.00 2.83
76 77 0.161446 GCGCATTTGTCCGCTTTTTG 59.839 50.000 0.30 0.00 46.14 2.44
77 78 2.516486 GCGCATTTGTCCGCTTTTT 58.484 47.368 0.30 0.00 46.14 1.94
78 79 4.243383 GCGCATTTGTCCGCTTTT 57.757 50.000 0.30 0.00 46.14 2.27
82 83 4.811761 GACGGCGCATTTGTCCGC 62.812 66.667 10.83 0.00 46.49 5.54
84 85 4.160635 CGGACGGCGCATTTGTCC 62.161 66.667 22.73 22.73 46.91 4.02
85 86 2.452366 AAACGGACGGCGCATTTGTC 62.452 55.000 10.83 11.19 0.00 3.18
86 87 2.452366 GAAACGGACGGCGCATTTGT 62.452 55.000 10.83 0.74 0.00 2.83
87 88 1.795962 GAAACGGACGGCGCATTTG 60.796 57.895 10.83 0.00 0.00 2.32
88 89 2.559330 GAAACGGACGGCGCATTT 59.441 55.556 10.83 1.98 0.00 2.32
89 90 3.784412 CGAAACGGACGGCGCATT 61.784 61.111 10.83 0.00 0.00 3.56
106 107 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
107 108 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
110 111 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
111 112 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
112 113 2.178912 TTAAGAGCAACTCCAACGGG 57.821 50.000 0.00 0.00 0.00 5.28
113 114 3.600388 AGATTAAGAGCAACTCCAACGG 58.400 45.455 0.00 0.00 0.00 4.44
114 115 5.613358 AAAGATTAAGAGCAACTCCAACG 57.387 39.130 0.00 0.00 0.00 4.10
115 116 7.674471 AGTAAAGATTAAGAGCAACTCCAAC 57.326 36.000 0.00 0.00 0.00 3.77
116 117 9.787435 TTAAGTAAAGATTAAGAGCAACTCCAA 57.213 29.630 0.00 0.00 0.00 3.53
117 118 9.787435 TTTAAGTAAAGATTAAGAGCAACTCCA 57.213 29.630 0.00 0.00 0.00 3.86
123 124 9.998106 AGACTGTTTAAGTAAAGATTAAGAGCA 57.002 29.630 0.00 0.00 40.07 4.26
150 151 6.658188 TTAAGCAGCTTTTAGCCCTAAAAA 57.342 33.333 14.29 0.00 43.77 1.94
151 152 6.041069 TGTTTAAGCAGCTTTTAGCCCTAAAA 59.959 34.615 14.29 11.48 43.77 1.52
152 153 5.536916 TGTTTAAGCAGCTTTTAGCCCTAAA 59.463 36.000 14.29 2.07 43.77 1.85
153 154 5.074115 TGTTTAAGCAGCTTTTAGCCCTAA 58.926 37.500 14.29 0.00 43.77 2.69
154 155 4.658063 TGTTTAAGCAGCTTTTAGCCCTA 58.342 39.130 14.29 0.00 43.77 3.53
155 156 3.496331 TGTTTAAGCAGCTTTTAGCCCT 58.504 40.909 14.29 0.00 43.77 5.19
156 157 3.838120 CTGTTTAAGCAGCTTTTAGCCC 58.162 45.455 14.29 0.00 43.77 5.19
182 183 0.108585 AGCAGCAGACCCTCGAAAAA 59.891 50.000 0.00 0.00 0.00 1.94
183 184 0.108585 AAGCAGCAGACCCTCGAAAA 59.891 50.000 0.00 0.00 0.00 2.29
184 185 0.973632 TAAGCAGCAGACCCTCGAAA 59.026 50.000 0.00 0.00 0.00 3.46
185 186 0.973632 TTAAGCAGCAGACCCTCGAA 59.026 50.000 0.00 0.00 0.00 3.71
186 187 0.973632 TTTAAGCAGCAGACCCTCGA 59.026 50.000 0.00 0.00 0.00 4.04
187 188 1.079503 GTTTAAGCAGCAGACCCTCG 58.920 55.000 0.00 0.00 0.00 4.63
188 189 2.079925 CTGTTTAAGCAGCAGACCCTC 58.920 52.381 6.37 0.00 32.39 4.30
189 190 1.421646 ACTGTTTAAGCAGCAGACCCT 59.578 47.619 18.15 0.00 39.96 4.34
190 191 1.897560 ACTGTTTAAGCAGCAGACCC 58.102 50.000 18.15 0.00 39.96 4.46
191 192 3.990318 AAACTGTTTAAGCAGCAGACC 57.010 42.857 18.15 0.00 39.96 3.85
214 215 5.900425 TGTTTAAGCAGCATGTCTCAAAAA 58.100 33.333 0.00 0.00 39.31 1.94
215 216 5.067674 ACTGTTTAAGCAGCATGTCTCAAAA 59.932 36.000 18.15 0.00 39.96 2.44
216 217 4.580167 ACTGTTTAAGCAGCATGTCTCAAA 59.420 37.500 18.15 0.00 39.96 2.69
217 218 4.136796 ACTGTTTAAGCAGCATGTCTCAA 58.863 39.130 18.15 0.00 39.96 3.02
218 219 3.743521 ACTGTTTAAGCAGCATGTCTCA 58.256 40.909 18.15 0.00 39.96 3.27
219 220 3.999663 AGACTGTTTAAGCAGCATGTCTC 59.000 43.478 18.15 7.99 39.96 3.36
220 221 4.013267 AGACTGTTTAAGCAGCATGTCT 57.987 40.909 18.15 11.65 39.96 3.41
221 222 4.756084 AAGACTGTTTAAGCAGCATGTC 57.244 40.909 18.15 9.71 39.96 3.06
222 223 5.520376 AAAAGACTGTTTAAGCAGCATGT 57.480 34.783 18.15 0.56 39.96 3.21
254 255 2.549754 TCTGACTGTTTAAGCAGCAAGC 59.450 45.455 18.15 7.07 46.19 4.01
255 256 4.035558 TGTTCTGACTGTTTAAGCAGCAAG 59.964 41.667 18.15 15.11 39.96 4.01
256 257 3.944650 TGTTCTGACTGTTTAAGCAGCAA 59.055 39.130 18.15 6.77 39.96 3.91
257 258 3.540617 TGTTCTGACTGTTTAAGCAGCA 58.459 40.909 18.15 15.14 39.96 4.41
258 259 3.608008 GCTGTTCTGACTGTTTAAGCAGC 60.608 47.826 18.15 11.77 39.96 5.25
259 260 3.363378 CGCTGTTCTGACTGTTTAAGCAG 60.363 47.826 16.83 16.83 41.92 4.24
260 261 2.543848 CGCTGTTCTGACTGTTTAAGCA 59.456 45.455 0.00 0.00 0.00 3.91
261 262 2.800544 TCGCTGTTCTGACTGTTTAAGC 59.199 45.455 0.00 0.00 0.00 3.09
262 263 5.597813 AATCGCTGTTCTGACTGTTTAAG 57.402 39.130 0.00 0.00 0.00 1.85
263 264 6.183360 ACAAAATCGCTGTTCTGACTGTTTAA 60.183 34.615 0.00 0.00 0.00 1.52
264 265 5.295787 ACAAAATCGCTGTTCTGACTGTTTA 59.704 36.000 0.00 0.00 0.00 2.01
265 266 4.096382 ACAAAATCGCTGTTCTGACTGTTT 59.904 37.500 0.00 0.00 0.00 2.83
266 267 3.627577 ACAAAATCGCTGTTCTGACTGTT 59.372 39.130 0.00 0.00 0.00 3.16
267 268 3.206150 ACAAAATCGCTGTTCTGACTGT 58.794 40.909 0.00 0.00 0.00 3.55
268 269 3.364366 GGACAAAATCGCTGTTCTGACTG 60.364 47.826 0.00 0.00 0.00 3.51
269 270 2.808543 GGACAAAATCGCTGTTCTGACT 59.191 45.455 0.00 0.00 0.00 3.41
270 271 2.411547 CGGACAAAATCGCTGTTCTGAC 60.412 50.000 0.00 0.00 0.00 3.51
271 272 1.798223 CGGACAAAATCGCTGTTCTGA 59.202 47.619 0.00 0.00 0.00 3.27
272 273 2.232239 CGGACAAAATCGCTGTTCTG 57.768 50.000 0.00 0.00 0.00 3.02
280 281 1.209127 GTGGGTGCGGACAAAATCG 59.791 57.895 9.96 0.00 0.00 3.34
281 282 1.584495 GGTGGGTGCGGACAAAATC 59.416 57.895 9.96 0.00 0.00 2.17
282 283 1.906333 GGGTGGGTGCGGACAAAAT 60.906 57.895 9.96 0.00 0.00 1.82
283 284 2.519780 GGGTGGGTGCGGACAAAA 60.520 61.111 9.96 0.00 0.00 2.44
284 285 3.140073 ATGGGTGGGTGCGGACAAA 62.140 57.895 9.96 0.00 0.00 2.83
285 286 3.561120 GATGGGTGGGTGCGGACAA 62.561 63.158 9.96 0.00 0.00 3.18
286 287 4.028490 GATGGGTGGGTGCGGACA 62.028 66.667 9.96 0.00 0.00 4.02
287 288 3.682292 GAGATGGGTGGGTGCGGAC 62.682 68.421 0.00 0.00 0.00 4.79
288 289 3.399181 GAGATGGGTGGGTGCGGA 61.399 66.667 0.00 0.00 0.00 5.54
289 290 2.876368 GAAGAGATGGGTGGGTGCGG 62.876 65.000 0.00 0.00 0.00 5.69
290 291 1.450312 GAAGAGATGGGTGGGTGCG 60.450 63.158 0.00 0.00 0.00 5.34
333 334 1.621672 CCTCTTCCTCCTCCACCAGC 61.622 65.000 0.00 0.00 0.00 4.85
343 344 0.252742 TTCCACCCCTCCTCTTCCTC 60.253 60.000 0.00 0.00 0.00 3.71
344 345 0.196118 TTTCCACCCCTCCTCTTCCT 59.804 55.000 0.00 0.00 0.00 3.36
345 346 1.004862 CTTTTCCACCCCTCCTCTTCC 59.995 57.143 0.00 0.00 0.00 3.46
346 347 1.614583 GCTTTTCCACCCCTCCTCTTC 60.615 57.143 0.00 0.00 0.00 2.87
347 348 0.405973 GCTTTTCCACCCCTCCTCTT 59.594 55.000 0.00 0.00 0.00 2.85
348 349 1.842381 CGCTTTTCCACCCCTCCTCT 61.842 60.000 0.00 0.00 0.00 3.69
349 350 1.377333 CGCTTTTCCACCCCTCCTC 60.377 63.158 0.00 0.00 0.00 3.71
350 351 2.757077 CGCTTTTCCACCCCTCCT 59.243 61.111 0.00 0.00 0.00 3.69
384 386 4.131088 GAGTCTCGGGTCGGTGGC 62.131 72.222 0.00 0.00 0.00 5.01
387 389 1.532316 TTTGGAGTCTCGGGTCGGT 60.532 57.895 0.00 0.00 0.00 4.69
388 390 1.215647 CTTTGGAGTCTCGGGTCGG 59.784 63.158 0.00 0.00 0.00 4.79
391 393 0.471211 TCCACTTTGGAGTCTCGGGT 60.471 55.000 0.00 0.00 42.67 5.28
406 408 3.318017 CCGATCGATCCATACTTTCCAC 58.682 50.000 18.66 0.00 0.00 4.02
407 409 2.299013 CCCGATCGATCCATACTTTCCA 59.701 50.000 18.66 0.00 0.00 3.53
414 416 0.888619 GCTGTCCCGATCGATCCATA 59.111 55.000 18.66 2.09 0.00 2.74
416 418 1.738346 CTGCTGTCCCGATCGATCCA 61.738 60.000 18.66 10.43 0.00 3.41
424 426 1.004560 CTTTCTGCTGCTGTCCCGA 60.005 57.895 0.00 0.00 0.00 5.14
427 429 2.075338 CTCTTCTTTCTGCTGCTGTCC 58.925 52.381 0.00 0.00 0.00 4.02
437 440 5.587289 CGGATTCGATTCTCTCTTCTTTCT 58.413 41.667 7.21 0.00 39.00 2.52
447 450 0.847035 GTCGTGCGGATTCGATTCTC 59.153 55.000 0.00 1.40 38.32 2.87
491 555 3.461773 CCGAGGGAGGCACATCGT 61.462 66.667 13.49 0.00 33.43 3.73
492 556 4.227134 CCCGAGGGAGGCACATCG 62.227 72.222 0.84 8.88 37.50 3.84
573 648 2.637640 GGGAGAGACAGGGGAGGGA 61.638 68.421 0.00 0.00 0.00 4.20
574 649 2.041405 GGGAGAGACAGGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
577 652 1.927569 CGAGAGGGAGAGACAGGGGA 61.928 65.000 0.00 0.00 0.00 4.81
578 653 1.454847 CGAGAGGGAGAGACAGGGG 60.455 68.421 0.00 0.00 0.00 4.79
583 658 3.213402 CGGGCGAGAGGGAGAGAC 61.213 72.222 0.00 0.00 0.00 3.36
604 681 1.544825 CGGAGGAGAGGGAAACAGCA 61.545 60.000 0.00 0.00 0.00 4.41
610 687 3.068691 CGTGCGGAGGAGAGGGAA 61.069 66.667 0.00 0.00 0.00 3.97
635 712 4.828925 GTGGGAGAGAGCGGCAGC 62.829 72.222 0.00 0.00 45.58 5.25
636 713 4.154347 GGTGGGAGAGAGCGGCAG 62.154 72.222 1.45 0.00 0.00 4.85
637 714 4.704103 AGGTGGGAGAGAGCGGCA 62.704 66.667 1.45 0.00 0.00 5.69
638 715 3.844090 GAGGTGGGAGAGAGCGGC 61.844 72.222 0.00 0.00 0.00 6.53
639 716 3.151022 GGAGGTGGGAGAGAGCGG 61.151 72.222 0.00 0.00 0.00 5.52
640 717 3.522731 CGGAGGTGGGAGAGAGCG 61.523 72.222 0.00 0.00 0.00 5.03
641 718 3.844090 GCGGAGGTGGGAGAGAGC 61.844 72.222 0.00 0.00 0.00 4.09
642 719 3.151022 GGCGGAGGTGGGAGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
643 720 3.663815 GAGGCGGAGGTGGGAGAGA 62.664 68.421 0.00 0.00 0.00 3.10
644 721 3.151022 GAGGCGGAGGTGGGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
645 722 3.663815 GAGAGGCGGAGGTGGGAGA 62.664 68.421 0.00 0.00 0.00 3.71
646 723 3.151022 GAGAGGCGGAGGTGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
647 724 4.779733 GGAGAGGCGGAGGTGGGA 62.780 72.222 0.00 0.00 0.00 4.37
731 808 4.711949 AGGAGGTGCTGGCGCTTG 62.712 66.667 7.64 0.90 36.97 4.01
732 809 3.909086 GAAGGAGGTGCTGGCGCTT 62.909 63.158 7.64 0.00 36.97 4.68
736 813 2.270527 GGAGAAGGAGGTGCTGGC 59.729 66.667 0.00 0.00 0.00 4.85
740 817 2.993853 CAGGGGAGAAGGAGGTGC 59.006 66.667 0.00 0.00 0.00 5.01
801 1013 3.499737 GATCGCGCAGTTGGTGGG 61.500 66.667 8.75 0.00 42.10 4.61
805 1017 0.529337 AGATCTGATCGCGCAGTTGG 60.529 55.000 8.75 0.00 37.20 3.77
807 1019 1.929836 GAAAGATCTGATCGCGCAGTT 59.070 47.619 8.75 5.49 37.20 3.16
810 1022 2.618709 TCTAGAAAGATCTGATCGCGCA 59.381 45.455 8.75 0.00 37.10 6.09
943 1156 1.519719 GAGGCGCAGAGATTGGTCT 59.480 57.895 10.83 0.00 37.42 3.85
944 1157 1.522580 GGAGGCGCAGAGATTGGTC 60.523 63.158 10.83 0.00 0.00 4.02
976 1189 4.687215 GCCGGCTCTGCACAGACA 62.687 66.667 22.15 0.00 33.22 3.41
1138 1354 3.472283 AGCCATTTGTTGAAACATGCA 57.528 38.095 0.00 0.00 38.95 3.96
1158 1387 2.158827 TGTGACTGGCTTAGCTTCACAA 60.159 45.455 23.77 13.61 38.62 3.33
1159 1388 1.416030 TGTGACTGGCTTAGCTTCACA 59.584 47.619 22.86 22.86 38.94 3.58
1162 1391 3.503748 ACATTTGTGACTGGCTTAGCTTC 59.496 43.478 3.59 0.00 0.00 3.86
1187 1416 3.883669 ACGGAGGGAGTACTACTTACAG 58.116 50.000 4.77 0.00 32.41 2.74
1188 1417 5.435686 TTACGGAGGGAGTACTACTTACA 57.564 43.478 4.77 0.00 32.41 2.41
1189 1418 6.116126 TCTTTACGGAGGGAGTACTACTTAC 58.884 44.000 4.77 0.00 0.00 2.34
1190 1419 6.313519 TCTTTACGGAGGGAGTACTACTTA 57.686 41.667 4.77 0.00 0.00 2.24
1191 1420 5.184892 TCTTTACGGAGGGAGTACTACTT 57.815 43.478 4.77 0.00 0.00 2.24
1193 1422 5.904362 TTTCTTTACGGAGGGAGTACTAC 57.096 43.478 0.00 0.00 0.00 2.73
1194 1423 9.866655 TTATATTTCTTTACGGAGGGAGTACTA 57.133 33.333 0.00 0.00 0.00 1.82
1195 1424 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
1196 1425 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
1197 1426 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
1198 1427 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
1199 1428 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1200 1429 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
1201 1430 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
1202 1431 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
1203 1432 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
1204 1433 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
1205 1434 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
1217 1446 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
1218 1447 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
1219 1448 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
1220 1449 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
1234 1463 9.298250 TGAGAGTGTTTAGATCACTACTTTAGT 57.702 33.333 0.00 0.00 44.68 2.24
1242 1471 9.950496 AACAAATATGAGAGTGTTTAGATCACT 57.050 29.630 0.00 0.00 46.86 3.41
1250 1479 9.003658 CCTCTGTAAACAAATATGAGAGTGTTT 57.996 33.333 5.98 5.98 44.23 2.83
1251 1480 7.607991 CCCTCTGTAAACAAATATGAGAGTGTT 59.392 37.037 0.00 0.00 35.77 3.32
1252 1481 7.038302 TCCCTCTGTAAACAAATATGAGAGTGT 60.038 37.037 0.00 0.00 0.00 3.55
1253 1482 7.331026 TCCCTCTGTAAACAAATATGAGAGTG 58.669 38.462 0.00 0.00 0.00 3.51
1254 1483 7.181125 ACTCCCTCTGTAAACAAATATGAGAGT 59.819 37.037 0.00 0.00 0.00 3.24
1255 1484 7.560368 ACTCCCTCTGTAAACAAATATGAGAG 58.440 38.462 0.00 0.00 0.00 3.20
1256 1485 7.496346 ACTCCCTCTGTAAACAAATATGAGA 57.504 36.000 0.00 0.00 0.00 3.27
1257 1486 9.838339 ATTACTCCCTCTGTAAACAAATATGAG 57.162 33.333 0.00 0.00 34.20 2.90
1262 1491 8.603304 ACTGTATTACTCCCTCTGTAAACAAAT 58.397 33.333 0.00 0.00 34.20 2.32
1263 1492 7.970102 ACTGTATTACTCCCTCTGTAAACAAA 58.030 34.615 0.00 0.00 34.20 2.83
1264 1493 7.549147 ACTGTATTACTCCCTCTGTAAACAA 57.451 36.000 0.00 0.00 34.20 2.83
1265 1494 8.654485 TTACTGTATTACTCCCTCTGTAAACA 57.346 34.615 0.00 0.00 34.20 2.83
1286 1515 9.702494 GGACCTGCTTATTACGTATTTATTACT 57.298 33.333 0.00 0.00 0.00 2.24
1287 1516 9.480053 TGGACCTGCTTATTACGTATTTATTAC 57.520 33.333 0.00 0.00 0.00 1.89
1289 1518 8.999431 CATGGACCTGCTTATTACGTATTTATT 58.001 33.333 0.00 0.00 0.00 1.40
1290 1519 7.606456 CCATGGACCTGCTTATTACGTATTTAT 59.394 37.037 5.56 0.00 0.00 1.40
1291 1520 6.932400 CCATGGACCTGCTTATTACGTATTTA 59.068 38.462 5.56 0.00 0.00 1.40
1292 1521 5.763204 CCATGGACCTGCTTATTACGTATTT 59.237 40.000 5.56 0.00 0.00 1.40
1293 1522 5.305585 CCATGGACCTGCTTATTACGTATT 58.694 41.667 5.56 0.00 0.00 1.89
1294 1523 4.802918 GCCATGGACCTGCTTATTACGTAT 60.803 45.833 18.40 0.00 0.00 3.06
1295 1524 3.493699 GCCATGGACCTGCTTATTACGTA 60.494 47.826 18.40 0.00 0.00 3.57
1296 1525 2.745152 GCCATGGACCTGCTTATTACGT 60.745 50.000 18.40 0.00 0.00 3.57
1297 1526 1.873591 GCCATGGACCTGCTTATTACG 59.126 52.381 18.40 0.00 0.00 3.18
1298 1527 2.158608 AGGCCATGGACCTGCTTATTAC 60.159 50.000 22.35 0.00 35.72 1.89
1335 1564 7.674348 TGATCCCAGGTCCTATATACTTTACAG 59.326 40.741 0.00 0.00 0.00 2.74
1337 1566 8.611051 ATGATCCCAGGTCCTATATACTTTAC 57.389 38.462 0.00 0.00 0.00 2.01
1338 1567 9.268282 GAATGATCCCAGGTCCTATATACTTTA 57.732 37.037 0.00 0.00 0.00 1.85
1339 1568 7.739444 TGAATGATCCCAGGTCCTATATACTTT 59.261 37.037 0.00 0.00 0.00 2.66
1343 1572 6.815880 ACTGAATGATCCCAGGTCCTATATA 58.184 40.000 10.36 0.00 34.85 0.86
1349 1578 3.019564 CAAACTGAATGATCCCAGGTCC 58.980 50.000 10.36 0.00 34.85 4.46
1439 1709 7.877097 CCAATTTCTTAGATGGATCCACTAGAG 59.123 40.741 18.99 13.10 34.82 2.43
1444 1714 7.416777 GGTTTCCAATTTCTTAGATGGATCCAC 60.417 40.741 18.99 11.34 41.36 4.02
1465 1735 6.460537 CCAACTGGTAGGTTTTAACAGGTTTC 60.461 42.308 4.46 0.00 33.63 2.78
1688 1962 1.746239 TGGTGTCATCCTGCATGCG 60.746 57.895 14.09 7.87 31.70 4.73
2041 2317 4.502259 GGACCTTCTGTGCATACTATCTGG 60.502 50.000 0.00 0.00 34.99 3.86
2209 2485 1.674359 TTTCAACCGCTTGAAGCAGA 58.326 45.000 18.22 6.28 45.20 4.26
2352 2628 6.766467 AGAACTTTAGAGTACACAAGGTTTGG 59.234 38.462 0.00 0.00 34.21 3.28
2446 2722 3.948473 GAGGAAAAAGGTGGGAATAGCTC 59.052 47.826 0.00 0.00 0.00 4.09
2447 2723 3.333680 TGAGGAAAAAGGTGGGAATAGCT 59.666 43.478 0.00 0.00 0.00 3.32
2450 2726 5.550403 AGTACTGAGGAAAAAGGTGGGAATA 59.450 40.000 0.00 0.00 0.00 1.75
2464 2740 5.284861 TGTTGCTTGTTAAGTACTGAGGA 57.715 39.130 0.00 0.00 0.00 3.71
2466 2742 8.128582 TGATTTTGTTGCTTGTTAAGTACTGAG 58.871 33.333 0.00 0.00 0.00 3.35
2467 2743 7.990917 TGATTTTGTTGCTTGTTAAGTACTGA 58.009 30.769 0.00 0.00 0.00 3.41
2469 2745 7.867403 CCATGATTTTGTTGCTTGTTAAGTACT 59.133 33.333 0.00 0.00 0.00 2.73
2470 2746 7.865385 TCCATGATTTTGTTGCTTGTTAAGTAC 59.135 33.333 0.00 0.00 0.00 2.73
2471 2747 7.946207 TCCATGATTTTGTTGCTTGTTAAGTA 58.054 30.769 0.00 0.00 0.00 2.24
2669 2947 5.048713 AGTGACCTGCAAATTTAGCACTAAC 60.049 40.000 10.11 7.51 37.02 2.34
2757 3039 5.948742 AACCAAAGGAATCAAAAGTGGAA 57.051 34.783 0.00 0.00 0.00 3.53
2823 3105 7.716799 AACATGAATTGTTATTTGGCTCCTA 57.283 32.000 0.00 0.00 46.75 2.94
2987 3269 5.626142 TGATGTACCTTTTGAGCTTTGGTA 58.374 37.500 0.00 0.00 32.74 3.25
3331 3615 9.698617 GGACGTGTCACAATTATCTTTTAATAC 57.301 33.333 3.42 0.00 0.00 1.89
3386 3670 9.717942 GTATTAGGAGAGTTATGAGCATTTGAT 57.282 33.333 0.00 0.00 0.00 2.57
3615 3901 6.329496 CAAAAGTTGCAAAACTGAGTAAGGA 58.671 36.000 0.00 0.00 32.47 3.36
4152 4438 2.076100 CTTGCAAGACGATTAGCACCA 58.924 47.619 22.31 0.00 36.62 4.17
4191 4477 3.104843 GCTCTCTGAGCGAATACCAAT 57.895 47.619 3.73 0.00 45.85 3.16
4398 4684 1.156736 CATTCTTCAGCCGGTTCGTT 58.843 50.000 1.90 0.00 0.00 3.85
4500 4786 1.222936 CCTCATTTCGCAGGCCTCT 59.777 57.895 0.00 0.00 0.00 3.69
4969 8941 5.476254 TCATCTGCAGTCCTATACATCTGAG 59.524 44.000 14.67 0.00 0.00 3.35
5003 9936 8.561738 AGTATTATTAAATGGGCGTAGGAATG 57.438 34.615 0.00 0.00 0.00 2.67
5124 10196 3.564225 GGGAGTTATTAAATGGGCGTCTG 59.436 47.826 0.00 0.00 0.00 3.51
5161 10235 8.063200 ACGTCTATATACATATTAGCAGCCAA 57.937 34.615 0.00 0.00 0.00 4.52
5266 10340 9.892130 CAACTTCAATAGTTTTATACTCCCTCT 57.108 33.333 0.00 0.00 44.73 3.69
5453 12138 3.068732 TCAATCTCTGCAAGGAGGTATCG 59.931 47.826 3.36 0.00 34.39 2.92
5492 12177 1.081556 TTTCCCGACATCACATCGCG 61.082 55.000 0.00 0.00 38.27 5.87
5506 12191 4.631377 GCATGAAATAACCTTTGCTTTCCC 59.369 41.667 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.