Multiple sequence alignment - TraesCS6B01G126400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G126400 chr6B 100.000 4771 0 0 1 4771 121816250 121811480 0.000000e+00 8811.0
1 TraesCS6B01G126400 chr6B 98.099 1946 34 2 1850 3795 122291286 122293228 0.000000e+00 3386.0
2 TraesCS6B01G126400 chr6B 87.866 478 35 12 1054 1525 122290611 122291071 1.510000e-149 540.0
3 TraesCS6B01G126400 chr6B 95.385 260 10 2 4514 4771 302764281 302764022 3.440000e-111 412.0
4 TraesCS6B01G126400 chr6B 95.025 201 7 2 1600 1800 122291066 122291263 3.580000e-81 313.0
5 TraesCS6B01G126400 chr6D 92.918 4208 193 47 5 4167 49217361 49221508 0.000000e+00 6023.0
6 TraesCS6B01G126400 chr6D 96.259 1898 64 6 1887 3783 48868745 48866854 0.000000e+00 3105.0
7 TraesCS6B01G126400 chr6D 86.517 445 35 17 1084 1525 48869405 48868983 2.600000e-127 466.0
8 TraesCS6B01G126400 chr6D 96.175 183 7 0 1600 1782 48868988 48868806 2.790000e-77 300.0
9 TraesCS6B01G126400 chr6D 89.340 197 19 2 4325 4519 49221675 49221871 3.690000e-61 246.0
10 TraesCS6B01G126400 chr6A 92.357 4226 177 50 5 4167 65685539 65681397 0.000000e+00 5880.0
11 TraesCS6B01G126400 chr6A 95.591 1905 75 5 1908 3812 65798525 65800420 0.000000e+00 3044.0
12 TraesCS6B01G126400 chr6A 85.169 445 37 16 1081 1525 65797846 65798261 3.410000e-116 429.0
13 TraesCS6B01G126400 chr6A 95.769 260 9 2 4514 4771 122322931 122322672 7.380000e-113 418.0
14 TraesCS6B01G126400 chr6A 87.421 318 24 8 4205 4520 65681383 65681080 7.600000e-93 351.0
15 TraesCS6B01G126400 chr6A 95.628 183 8 0 1600 1782 65798256 65798438 1.300000e-75 294.0
16 TraesCS6B01G126400 chr5B 92.896 549 30 4 3303 3843 162833187 162833734 0.000000e+00 789.0
17 TraesCS6B01G126400 chr5B 86.224 196 20 5 913 1101 322748839 322749034 6.260000e-49 206.0
18 TraesCS6B01G126400 chr4A 96.850 254 6 2 4520 4771 254384493 254384240 1.590000e-114 424.0
19 TraesCS6B01G126400 chr4A 92.683 41 3 0 4337 4377 601184861 601184821 5.160000e-05 60.2
20 TraesCS6B01G126400 chr2B 96.825 252 8 0 4520 4771 628216280 628216531 5.710000e-114 422.0
21 TraesCS6B01G126400 chr2B 94.717 265 12 2 4509 4771 585563269 585563533 1.240000e-110 411.0
22 TraesCS6B01G126400 chr2B 95.057 263 10 3 4512 4771 647187091 647187353 1.240000e-110 411.0
23 TraesCS6B01G126400 chr3B 96.094 256 9 1 4517 4771 707754081 707754336 2.660000e-112 416.0
24 TraesCS6B01G126400 chr3B 87.500 56 6 1 4245 4299 798441310 798441255 3.990000e-06 63.9
25 TraesCS6B01G126400 chr1B 95.094 265 10 3 4508 4771 169143611 169143349 9.550000e-112 414.0
26 TraesCS6B01G126400 chr7B 94.096 271 13 3 4502 4771 386185675 386185943 4.440000e-110 409.0
27 TraesCS6B01G126400 chr7B 83.117 77 10 3 4238 4311 153426751 153426827 3.080000e-07 67.6
28 TraesCS6B01G126400 chr2D 88.889 72 7 1 4248 4318 542973720 542973649 2.370000e-13 87.9
29 TraesCS6B01G126400 chr5A 91.667 48 2 1 4325 4372 464576060 464576105 1.110000e-06 65.8
30 TraesCS6B01G126400 chr7A 88.889 45 5 0 4264 4308 37418167 37418123 6.670000e-04 56.5
31 TraesCS6B01G126400 chrUn 96.875 32 1 0 4346 4377 60954859 60954828 2.000000e-03 54.7
32 TraesCS6B01G126400 chr1D 96.875 32 1 0 4346 4377 473032327 473032296 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G126400 chr6B 121811480 121816250 4770 True 8811.000000 8811 100.000000 1 4771 1 chr6B.!!$R1 4770
1 TraesCS6B01G126400 chr6B 122290611 122293228 2617 False 1413.000000 3386 93.663333 1054 3795 3 chr6B.!!$F1 2741
2 TraesCS6B01G126400 chr6D 49217361 49221871 4510 False 3134.500000 6023 91.129000 5 4519 2 chr6D.!!$F1 4514
3 TraesCS6B01G126400 chr6D 48866854 48869405 2551 True 1290.333333 3105 92.983667 1084 3783 3 chr6D.!!$R1 2699
4 TraesCS6B01G126400 chr6A 65681080 65685539 4459 True 3115.500000 5880 89.889000 5 4520 2 chr6A.!!$R2 4515
5 TraesCS6B01G126400 chr6A 65797846 65800420 2574 False 1255.666667 3044 92.129333 1081 3812 3 chr6A.!!$F1 2731
6 TraesCS6B01G126400 chr5B 162833187 162833734 547 False 789.000000 789 92.896000 3303 3843 1 chr5B.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 96 0.107703 GATCAGATGACCGCCACCAA 60.108 55.000 0.0 0.0 0.0 3.67 F
256 263 0.615331 CTGTAAGGAGGAGCAGGCAA 59.385 55.000 0.0 0.0 0.0 4.52 F
896 936 0.745468 TACGGGCACATACATACGCA 59.255 50.000 0.0 0.0 0.0 5.24 F
1828 1902 2.054021 TCTCCTGTTCATGTTCCACCA 58.946 47.619 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 1500 1.153745 GAGGTTGATGAGCGACGCT 60.154 57.895 24.77 24.77 43.88 5.07 R
1811 1885 1.538047 CCTGGTGGAACATGAACAGG 58.462 55.000 0.00 0.00 44.52 4.00 R
2148 2233 2.048222 CTCCTCCAGCGCGAACAA 60.048 61.111 12.10 0.00 0.00 2.83 R
3795 3897 6.818142 ACAGTAATAATTCCCAAAATTGCTGC 59.182 34.615 11.90 0.00 42.34 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.833732 TGTAGTGTTGCCACCCAATTAA 58.166 40.909 0.00 0.00 42.88 1.40
57 58 4.498520 CGATGGAGAGCACGCCGT 62.499 66.667 0.00 0.00 38.83 5.68
60 62 0.249489 GATGGAGAGCACGCCGTAAT 60.249 55.000 0.00 0.00 38.83 1.89
79 81 1.102978 TCGTCGCCATCTGAAGATCA 58.897 50.000 0.00 0.00 31.21 2.92
94 96 0.107703 GATCAGATGACCGCCACCAA 60.108 55.000 0.00 0.00 0.00 3.67
101 103 2.933287 ACCGCCACCAAGGATCCA 60.933 61.111 15.82 0.00 41.22 3.41
126 130 1.344458 CATCATCTCGATGCTACCGC 58.656 55.000 2.05 0.00 44.95 5.68
152 156 3.082579 GCCATCGAACGAGGAGCCT 62.083 63.158 10.32 0.00 0.00 4.58
156 160 1.668101 ATCGAACGAGGAGCCTCCAC 61.668 60.000 14.46 5.71 39.61 4.02
172 176 4.241555 ACCCGCCATCTCGATGCC 62.242 66.667 1.37 0.00 37.49 4.40
225 229 3.039405 GCACATACTTCTCTCGACGATG 58.961 50.000 0.00 0.00 0.00 3.84
254 261 1.153269 GCTGTAAGGAGGAGCAGGC 60.153 63.158 0.00 0.00 32.70 4.85
256 263 0.615331 CTGTAAGGAGGAGCAGGCAA 59.385 55.000 0.00 0.00 0.00 4.52
286 293 2.621338 GAGTTTGTGCAGATCGGATCA 58.379 47.619 19.47 0.00 0.00 2.92
324 331 6.534079 CCTACGGTCTAGTGAAAACCTAAATG 59.466 42.308 0.00 0.00 0.00 2.32
455 465 5.749462 AGATTCCATAAAACACAGCTAGCT 58.251 37.500 12.68 12.68 0.00 3.32
457 467 6.989169 AGATTCCATAAAACACAGCTAGCTAG 59.011 38.462 18.86 16.84 0.00 3.42
482 497 4.545678 CCCATTAGATTCCATGGACCAAA 58.454 43.478 15.91 7.19 42.49 3.28
579 601 6.237901 ACTGTAACTTGGAACATAAGCATCA 58.762 36.000 0.00 0.00 39.30 3.07
629 652 4.366684 CCTCAGTTGGGGCCCACC 62.367 72.222 28.84 20.87 39.11 4.61
807 847 1.955778 CAGGTTGTTGATCCACTTGCA 59.044 47.619 0.00 0.00 0.00 4.08
808 848 2.361757 CAGGTTGTTGATCCACTTGCAA 59.638 45.455 0.00 0.00 0.00 4.08
896 936 0.745468 TACGGGCACATACATACGCA 59.255 50.000 0.00 0.00 0.00 5.24
978 1018 2.743928 CGGCCACCAAGCTCTGTC 60.744 66.667 2.24 0.00 0.00 3.51
1231 1274 5.900425 TCGACTACGAGTGAGTATTCTACT 58.100 41.667 0.00 0.00 43.81 2.57
1243 1286 6.149640 GTGAGTATTCTACTGCTCGATCCATA 59.850 42.308 0.00 0.00 39.59 2.74
1251 1306 5.537300 ACTGCTCGATCCATACTTACAAT 57.463 39.130 0.00 0.00 0.00 2.71
1266 1321 5.689819 ACTTACAATTCTGTTCGTGCAATC 58.310 37.500 0.00 0.00 36.96 2.67
1269 1324 3.814842 ACAATTCTGTTCGTGCAATCAGA 59.185 39.130 0.00 0.00 35.54 3.27
1273 1332 3.402110 TCTGTTCGTGCAATCAGATTGT 58.598 40.909 21.82 0.00 42.20 2.71
1440 1500 2.782222 GCTCCTCACCGGCGTCATA 61.782 63.158 6.01 0.00 0.00 2.15
1540 1600 3.864243 AGGTACGGCGAGATCTATCTAG 58.136 50.000 16.62 0.00 37.25 2.43
1559 1627 3.692406 GACGGCGGGACCAGAGTT 61.692 66.667 13.24 0.00 39.03 3.01
1586 1654 6.008696 TGGTCGGGGAATTAATTATGTTCT 57.991 37.500 0.00 0.00 0.00 3.01
1811 1885 6.825944 ATAAAGCCTTGAACCTTTCTTCTC 57.174 37.500 0.00 0.00 33.64 2.87
1826 1900 4.008074 TCTTCTCCTGTTCATGTTCCAC 57.992 45.455 0.00 0.00 0.00 4.02
1827 1901 2.859165 TCTCCTGTTCATGTTCCACC 57.141 50.000 0.00 0.00 0.00 4.61
1828 1902 2.054021 TCTCCTGTTCATGTTCCACCA 58.946 47.619 0.00 0.00 0.00 4.17
1885 1965 5.750547 CGAAGCTGCAAGAGAGACATTAATA 59.249 40.000 1.02 0.00 34.07 0.98
2096 2181 2.573869 CGCGACCTCATCACCTGT 59.426 61.111 0.00 0.00 0.00 4.00
3799 3901 1.932511 CTGAAAGCTACTAGCAGCAGC 59.067 52.381 17.25 7.79 45.56 5.25
3800 3902 1.276138 TGAAAGCTACTAGCAGCAGCA 59.724 47.619 17.25 8.70 45.56 4.41
3801 3903 2.289631 TGAAAGCTACTAGCAGCAGCAA 60.290 45.455 17.25 0.00 45.56 3.91
3856 3963 1.201647 CTTGAAGCAAGAGCCACATGG 59.798 52.381 0.00 0.00 43.42 3.66
3874 3981 2.282391 TTCACTTGCTGGCGCCAT 60.282 55.556 32.87 12.60 34.43 4.40
3889 3996 3.182182 GCGCCATGATTCTTTCTTTTCC 58.818 45.455 0.00 0.00 0.00 3.13
3925 4032 6.497259 TCTCTGTAAGTAGGTTCAGGATTTGT 59.503 38.462 0.00 0.00 33.76 2.83
3926 4033 6.698380 TCTGTAAGTAGGTTCAGGATTTGTC 58.302 40.000 0.00 0.00 33.76 3.18
3970 4081 5.055265 TCGGGGAATGGCTGAATAATTTA 57.945 39.130 0.00 0.00 0.00 1.40
3982 4093 6.438763 GCTGAATAATTTACTGCCCATGTAC 58.561 40.000 0.00 0.00 0.00 2.90
4129 4242 1.401539 GGCACTTCTGTTGGATTTCGC 60.402 52.381 0.00 0.00 0.00 4.70
4161 4274 0.365523 CATCCACGTTAGAACACGCG 59.634 55.000 3.53 3.53 44.37 6.01
4184 4297 9.392996 CGCGATCGTCAAATATAATATGTTTAC 57.607 33.333 17.81 0.00 0.00 2.01
4204 4317 9.073475 TGTTTACTGGTTCTATTATGCTTTTGT 57.927 29.630 0.00 0.00 0.00 2.83
4258 4372 9.440784 GAATAGTCAAATACAGTACTCTCTTCG 57.559 37.037 0.00 0.00 0.00 3.79
4315 4433 7.708051 TCTAAACTACATACAGACTGAGATGC 58.292 38.462 10.08 0.00 0.00 3.91
4318 4436 5.123936 ACTACATACAGACTGAGATGCGTA 58.876 41.667 10.08 1.40 0.00 4.42
4319 4437 4.294416 ACATACAGACTGAGATGCGTAC 57.706 45.455 10.08 0.00 0.00 3.67
4323 4441 2.493675 ACAGACTGAGATGCGTACACAT 59.506 45.455 10.08 0.00 0.00 3.21
4324 4442 2.856557 CAGACTGAGATGCGTACACATG 59.143 50.000 0.01 0.00 0.00 3.21
4325 4443 2.755103 AGACTGAGATGCGTACACATGA 59.245 45.455 0.01 0.00 0.00 3.07
4326 4444 3.382865 AGACTGAGATGCGTACACATGAT 59.617 43.478 0.01 0.00 0.00 2.45
4327 4445 4.115516 GACTGAGATGCGTACACATGATT 58.884 43.478 0.01 0.00 0.00 2.57
4328 4446 4.507710 ACTGAGATGCGTACACATGATTT 58.492 39.130 0.01 0.00 0.00 2.17
4329 4447 5.660460 ACTGAGATGCGTACACATGATTTA 58.340 37.500 0.01 0.00 0.00 1.40
4330 4448 5.750547 ACTGAGATGCGTACACATGATTTAG 59.249 40.000 0.01 0.00 0.00 1.85
4333 4451 6.476706 TGAGATGCGTACACATGATTTAGAAG 59.523 38.462 0.01 0.00 0.00 2.85
4334 4452 5.755375 AGATGCGTACACATGATTTAGAAGG 59.245 40.000 0.01 0.00 0.00 3.46
4335 4453 5.079689 TGCGTACACATGATTTAGAAGGA 57.920 39.130 0.00 0.00 0.00 3.36
4392 4540 7.589954 CGGAGGAACTAGTTTTTGTTATGTTTG 59.410 37.037 10.02 0.00 41.55 2.93
4404 4552 4.006989 TGTTATGTTTGGATCCACGGAAG 58.993 43.478 15.91 0.00 0.00 3.46
4465 4613 5.462068 TGAACACATGTACAGAAACTTCTCG 59.538 40.000 0.00 0.00 34.74 4.04
4480 4628 9.442047 AGAAACTTCTCGACAAGATCATTTTAT 57.558 29.630 7.48 0.00 32.82 1.40
4520 4668 3.801594 GTGTAAATTGCGGGGCATAAATG 59.198 43.478 0.00 0.00 38.76 2.32
4521 4669 3.449018 TGTAAATTGCGGGGCATAAATGT 59.551 39.130 0.00 0.00 38.76 2.71
4522 4670 2.888834 AATTGCGGGGCATAAATGTC 57.111 45.000 0.00 0.00 38.76 3.06
4523 4671 1.774110 ATTGCGGGGCATAAATGTCA 58.226 45.000 0.00 0.00 38.76 3.58
4524 4672 1.102154 TTGCGGGGCATAAATGTCAG 58.898 50.000 0.00 0.00 38.76 3.51
4525 4673 0.751277 TGCGGGGCATAAATGTCAGG 60.751 55.000 0.00 0.00 33.08 3.86
4526 4674 0.465460 GCGGGGCATAAATGTCAGGA 60.465 55.000 0.00 0.00 33.08 3.86
4527 4675 1.308998 CGGGGCATAAATGTCAGGAC 58.691 55.000 0.00 0.00 33.08 3.85
4528 4676 1.692411 GGGGCATAAATGTCAGGACC 58.308 55.000 0.00 0.00 33.08 4.46
4529 4677 1.692411 GGGCATAAATGTCAGGACCC 58.308 55.000 0.00 0.00 33.08 4.46
4530 4678 1.692411 GGCATAAATGTCAGGACCCC 58.308 55.000 0.00 0.00 31.41 4.95
4531 4679 1.064017 GGCATAAATGTCAGGACCCCA 60.064 52.381 0.00 0.00 31.41 4.96
4532 4680 2.622977 GGCATAAATGTCAGGACCCCAA 60.623 50.000 0.00 0.00 31.41 4.12
4533 4681 3.299503 GCATAAATGTCAGGACCCCAAT 58.700 45.455 0.00 0.00 0.00 3.16
4534 4682 3.319122 GCATAAATGTCAGGACCCCAATC 59.681 47.826 0.00 0.00 0.00 2.67
4535 4683 2.532250 AAATGTCAGGACCCCAATCC 57.468 50.000 0.00 0.00 39.28 3.01
4543 4691 2.711978 GGACCCCAATCCTAAGTCAC 57.288 55.000 0.00 0.00 35.68 3.67
4544 4692 1.913419 GGACCCCAATCCTAAGTCACA 59.087 52.381 0.00 0.00 35.68 3.58
4545 4693 2.355818 GGACCCCAATCCTAAGTCACAC 60.356 54.545 0.00 0.00 35.68 3.82
4546 4694 1.633945 ACCCCAATCCTAAGTCACACC 59.366 52.381 0.00 0.00 0.00 4.16
4547 4695 1.406887 CCCCAATCCTAAGTCACACCG 60.407 57.143 0.00 0.00 0.00 4.94
4548 4696 1.553248 CCCAATCCTAAGTCACACCGA 59.447 52.381 0.00 0.00 0.00 4.69
4549 4697 2.170607 CCCAATCCTAAGTCACACCGAT 59.829 50.000 0.00 0.00 0.00 4.18
4550 4698 3.458189 CCAATCCTAAGTCACACCGATC 58.542 50.000 0.00 0.00 0.00 3.69
4551 4699 3.133003 CCAATCCTAAGTCACACCGATCT 59.867 47.826 0.00 0.00 0.00 2.75
4552 4700 4.341235 CCAATCCTAAGTCACACCGATCTA 59.659 45.833 0.00 0.00 0.00 1.98
4553 4701 5.508153 CCAATCCTAAGTCACACCGATCTAG 60.508 48.000 0.00 0.00 0.00 2.43
4554 4702 2.950309 TCCTAAGTCACACCGATCTAGC 59.050 50.000 0.00 0.00 0.00 3.42
4555 4703 2.688446 CCTAAGTCACACCGATCTAGCA 59.312 50.000 0.00 0.00 0.00 3.49
4556 4704 3.319405 CCTAAGTCACACCGATCTAGCAT 59.681 47.826 0.00 0.00 0.00 3.79
4557 4705 2.879002 AGTCACACCGATCTAGCATG 57.121 50.000 0.00 0.00 0.00 4.06
4558 4706 2.103373 AGTCACACCGATCTAGCATGT 58.897 47.619 0.00 0.00 0.00 3.21
4559 4707 3.288092 AGTCACACCGATCTAGCATGTA 58.712 45.455 0.00 0.00 0.00 2.29
4560 4708 3.699538 AGTCACACCGATCTAGCATGTAA 59.300 43.478 0.00 0.00 0.00 2.41
4561 4709 3.797256 GTCACACCGATCTAGCATGTAAC 59.203 47.826 0.00 0.00 0.00 2.50
4562 4710 3.445805 TCACACCGATCTAGCATGTAACA 59.554 43.478 0.00 0.00 0.00 2.41
4563 4711 3.551890 CACACCGATCTAGCATGTAACAC 59.448 47.826 0.00 0.00 0.00 3.32
4564 4712 3.194755 ACACCGATCTAGCATGTAACACA 59.805 43.478 0.00 0.00 0.00 3.72
4565 4713 4.141937 ACACCGATCTAGCATGTAACACAT 60.142 41.667 0.00 0.00 39.91 3.21
4566 4714 4.445718 CACCGATCTAGCATGTAACACATC 59.554 45.833 0.00 0.00 36.53 3.06
4567 4715 4.099419 ACCGATCTAGCATGTAACACATCA 59.901 41.667 0.00 0.00 36.53 3.07
4568 4716 5.221521 ACCGATCTAGCATGTAACACATCAT 60.222 40.000 0.00 0.00 36.53 2.45
4569 4717 6.015434 ACCGATCTAGCATGTAACACATCATA 60.015 38.462 0.00 0.00 36.53 2.15
4570 4718 7.038048 CCGATCTAGCATGTAACACATCATAT 58.962 38.462 0.00 0.00 36.53 1.78
4571 4719 7.221645 CCGATCTAGCATGTAACACATCATATC 59.778 40.741 0.00 0.00 36.53 1.63
4572 4720 7.756722 CGATCTAGCATGTAACACATCATATCA 59.243 37.037 0.00 0.00 36.53 2.15
4573 4721 8.768957 ATCTAGCATGTAACACATCATATCAC 57.231 34.615 0.00 0.00 36.53 3.06
4574 4722 7.955918 TCTAGCATGTAACACATCATATCACT 58.044 34.615 0.00 0.00 36.53 3.41
4575 4723 8.424133 TCTAGCATGTAACACATCATATCACTT 58.576 33.333 0.00 0.00 36.53 3.16
4576 4724 7.870509 AGCATGTAACACATCATATCACTTT 57.129 32.000 0.00 0.00 36.53 2.66
4577 4725 7.700505 AGCATGTAACACATCATATCACTTTG 58.299 34.615 0.00 0.00 36.53 2.77
4578 4726 6.415867 GCATGTAACACATCATATCACTTTGC 59.584 38.462 0.00 0.00 36.53 3.68
4579 4727 6.105657 TGTAACACATCATATCACTTTGCG 57.894 37.500 0.00 0.00 0.00 4.85
4580 4728 4.621068 AACACATCATATCACTTTGCGG 57.379 40.909 0.00 0.00 0.00 5.69
4581 4729 2.355756 ACACATCATATCACTTTGCGGC 59.644 45.455 0.00 0.00 0.00 6.53
4582 4730 1.949525 ACATCATATCACTTTGCGGCC 59.050 47.619 0.00 0.00 0.00 6.13
4583 4731 2.224606 CATCATATCACTTTGCGGCCT 58.775 47.619 0.00 0.00 0.00 5.19
4584 4732 1.953559 TCATATCACTTTGCGGCCTC 58.046 50.000 0.00 0.00 0.00 4.70
4585 4733 1.209261 TCATATCACTTTGCGGCCTCA 59.791 47.619 0.00 0.00 0.00 3.86
4586 4734 1.331756 CATATCACTTTGCGGCCTCAC 59.668 52.381 0.00 0.00 0.00 3.51
4587 4735 0.739462 TATCACTTTGCGGCCTCACG 60.739 55.000 0.00 0.00 0.00 4.35
4588 4736 2.731691 ATCACTTTGCGGCCTCACGT 62.732 55.000 0.00 0.00 35.98 4.49
4589 4737 1.666553 CACTTTGCGGCCTCACGTA 60.667 57.895 0.00 0.00 35.98 3.57
4590 4738 1.666872 ACTTTGCGGCCTCACGTAC 60.667 57.895 0.00 0.00 35.98 3.67
4591 4739 2.726691 CTTTGCGGCCTCACGTACG 61.727 63.158 15.01 15.01 35.98 3.67
4592 4740 4.728102 TTGCGGCCTCACGTACGG 62.728 66.667 21.06 8.79 35.98 4.02
4594 4742 3.814268 GCGGCCTCACGTACGGTA 61.814 66.667 21.06 5.91 35.98 4.02
4595 4743 3.113745 CGGCCTCACGTACGGTAT 58.886 61.111 21.06 0.00 0.00 2.73
4596 4744 1.434696 CGGCCTCACGTACGGTATT 59.565 57.895 21.06 0.00 0.00 1.89
4597 4745 0.179129 CGGCCTCACGTACGGTATTT 60.179 55.000 21.06 0.00 0.00 1.40
4598 4746 1.564207 GGCCTCACGTACGGTATTTC 58.436 55.000 21.06 3.82 0.00 2.17
4599 4747 1.564207 GCCTCACGTACGGTATTTCC 58.436 55.000 21.06 0.00 0.00 3.13
4600 4748 1.135024 GCCTCACGTACGGTATTTCCA 60.135 52.381 21.06 0.00 35.57 3.53
4601 4749 2.533266 CCTCACGTACGGTATTTCCAC 58.467 52.381 21.06 0.00 35.57 4.02
4602 4750 2.179589 CTCACGTACGGTATTTCCACG 58.820 52.381 21.06 0.00 40.15 4.94
4603 4751 1.135431 TCACGTACGGTATTTCCACGG 60.135 52.381 21.06 0.00 39.10 4.94
4604 4752 0.173255 ACGTACGGTATTTCCACGGG 59.827 55.000 21.06 0.00 39.10 5.28
4605 4753 0.173255 CGTACGGTATTTCCACGGGT 59.827 55.000 7.57 0.00 33.69 5.28
4606 4754 1.643880 GTACGGTATTTCCACGGGTG 58.356 55.000 0.00 0.00 35.57 4.61
4607 4755 1.066929 GTACGGTATTTCCACGGGTGT 60.067 52.381 0.00 0.00 35.57 4.16
4608 4756 0.037046 ACGGTATTTCCACGGGTGTC 60.037 55.000 0.00 0.00 35.57 3.67
4609 4757 0.037139 CGGTATTTCCACGGGTGTCA 60.037 55.000 0.00 0.00 35.57 3.58
4610 4758 1.445871 GGTATTTCCACGGGTGTCAC 58.554 55.000 0.00 0.00 35.97 3.67
4611 4759 1.445871 GTATTTCCACGGGTGTCACC 58.554 55.000 14.13 14.13 37.60 4.02
4612 4760 1.002773 GTATTTCCACGGGTGTCACCT 59.997 52.381 21.40 0.00 38.64 4.00
4613 4761 0.476771 ATTTCCACGGGTGTCACCTT 59.523 50.000 21.40 6.42 38.64 3.50
4614 4762 1.129917 TTTCCACGGGTGTCACCTTA 58.870 50.000 21.40 0.59 38.64 2.69
4615 4763 0.393820 TTCCACGGGTGTCACCTTAC 59.606 55.000 21.40 4.38 38.64 2.34
4616 4764 1.004200 CCACGGGTGTCACCTTACC 60.004 63.158 21.40 4.01 38.64 2.85
4617 4765 1.477685 CCACGGGTGTCACCTTACCT 61.478 60.000 21.40 0.00 38.64 3.08
4618 4766 0.320421 CACGGGTGTCACCTTACCTG 60.320 60.000 21.40 2.87 46.53 4.00
4619 4767 1.295423 CGGGTGTCACCTTACCTGG 59.705 63.158 21.40 0.00 39.23 4.45
4620 4768 1.002502 GGGTGTCACCTTACCTGGC 60.003 63.158 21.40 0.00 38.64 4.85
4621 4769 1.002502 GGTGTCACCTTACCTGGCC 60.003 63.158 15.22 0.00 34.73 5.36
4622 4770 1.002502 GTGTCACCTTACCTGGCCC 60.003 63.158 0.00 0.00 0.00 5.80
4623 4771 2.267961 GTCACCTTACCTGGCCCG 59.732 66.667 0.00 0.00 0.00 6.13
4624 4772 3.006728 TCACCTTACCTGGCCCGG 61.007 66.667 12.40 12.40 0.00 5.73
4625 4773 3.006728 CACCTTACCTGGCCCGGA 61.007 66.667 21.63 0.34 0.00 5.14
4626 4774 3.007323 ACCTTACCTGGCCCGGAC 61.007 66.667 21.63 0.00 0.00 4.79
4627 4775 3.793888 CCTTACCTGGCCCGGACC 61.794 72.222 21.63 0.00 0.00 4.46
4628 4776 4.157120 CTTACCTGGCCCGGACCG 62.157 72.222 21.63 6.99 0.00 4.79
4639 4787 3.656045 CGGACCGTTTGCGCCTTT 61.656 61.111 4.18 0.00 36.67 3.11
4640 4788 2.725641 GGACCGTTTGCGCCTTTT 59.274 55.556 4.18 0.00 36.67 2.27
4641 4789 1.843734 CGGACCGTTTGCGCCTTTTA 61.844 55.000 4.18 0.00 36.67 1.52
4642 4790 0.109919 GGACCGTTTGCGCCTTTTAG 60.110 55.000 4.18 0.00 36.67 1.85
4643 4791 0.728129 GACCGTTTGCGCCTTTTAGC 60.728 55.000 4.18 0.00 36.67 3.09
4644 4792 1.170290 ACCGTTTGCGCCTTTTAGCT 61.170 50.000 4.18 0.00 36.67 3.32
4645 4793 0.454452 CCGTTTGCGCCTTTTAGCTC 60.454 55.000 4.18 0.00 36.67 4.09
4646 4794 0.237235 CGTTTGCGCCTTTTAGCTCA 59.763 50.000 4.18 0.00 0.00 4.26
4647 4795 1.686464 GTTTGCGCCTTTTAGCTCAC 58.314 50.000 4.18 0.00 0.00 3.51
4648 4796 0.237235 TTTGCGCCTTTTAGCTCACG 59.763 50.000 4.18 0.00 0.00 4.35
4649 4797 0.882927 TTGCGCCTTTTAGCTCACGT 60.883 50.000 4.18 0.00 0.00 4.49
4650 4798 0.038067 TGCGCCTTTTAGCTCACGTA 60.038 50.000 4.18 0.00 0.00 3.57
4651 4799 1.287425 GCGCCTTTTAGCTCACGTAT 58.713 50.000 0.00 0.00 0.00 3.06
4652 4800 2.159212 TGCGCCTTTTAGCTCACGTATA 60.159 45.455 4.18 0.00 0.00 1.47
4653 4801 3.057734 GCGCCTTTTAGCTCACGTATAT 58.942 45.455 0.00 0.00 0.00 0.86
4654 4802 3.120991 GCGCCTTTTAGCTCACGTATATG 60.121 47.826 0.00 0.00 0.00 1.78
4655 4803 4.295870 CGCCTTTTAGCTCACGTATATGA 58.704 43.478 0.00 0.00 0.00 2.15
4656 4804 4.923871 CGCCTTTTAGCTCACGTATATGAT 59.076 41.667 0.00 0.00 0.00 2.45
4657 4805 6.090783 CGCCTTTTAGCTCACGTATATGATA 58.909 40.000 0.00 0.00 0.00 2.15
4658 4806 6.251589 CGCCTTTTAGCTCACGTATATGATAG 59.748 42.308 0.00 0.00 0.00 2.08
4659 4807 7.091443 GCCTTTTAGCTCACGTATATGATAGT 58.909 38.462 0.00 0.00 0.00 2.12
4660 4808 7.062371 GCCTTTTAGCTCACGTATATGATAGTG 59.938 40.741 0.00 0.00 36.06 2.74
4661 4809 7.062371 CCTTTTAGCTCACGTATATGATAGTGC 59.938 40.741 0.00 1.69 34.84 4.40
4662 4810 4.442375 AGCTCACGTATATGATAGTGCC 57.558 45.455 0.00 0.00 34.84 5.01
4663 4811 3.119814 AGCTCACGTATATGATAGTGCCG 60.120 47.826 0.00 0.00 34.84 5.69
4664 4812 3.172050 CTCACGTATATGATAGTGCCGC 58.828 50.000 0.00 0.00 34.84 6.53
4665 4813 2.817844 TCACGTATATGATAGTGCCGCT 59.182 45.455 0.00 0.00 34.84 5.52
4666 4814 4.004982 TCACGTATATGATAGTGCCGCTA 58.995 43.478 0.00 0.00 34.84 4.26
4667 4815 4.094442 TCACGTATATGATAGTGCCGCTAG 59.906 45.833 0.00 0.00 34.84 3.42
4668 4816 3.181499 ACGTATATGATAGTGCCGCTAGC 60.181 47.826 4.06 4.06 44.14 3.42
4678 4826 3.840831 GCCGCTAGCATCCATATGA 57.159 52.632 16.45 0.00 42.97 2.15
4679 4827 1.363744 GCCGCTAGCATCCATATGAC 58.636 55.000 16.45 0.00 42.97 3.06
4680 4828 1.338105 GCCGCTAGCATCCATATGACA 60.338 52.381 16.45 0.00 42.97 3.58
4681 4829 2.871637 GCCGCTAGCATCCATATGACAA 60.872 50.000 16.45 0.00 42.97 3.18
4682 4830 3.402110 CCGCTAGCATCCATATGACAAA 58.598 45.455 16.45 0.00 34.84 2.83
4683 4831 3.434641 CCGCTAGCATCCATATGACAAAG 59.565 47.826 16.45 0.00 34.84 2.77
4684 4832 4.309933 CGCTAGCATCCATATGACAAAGA 58.690 43.478 16.45 0.00 34.84 2.52
4685 4833 4.751600 CGCTAGCATCCATATGACAAAGAA 59.248 41.667 16.45 0.00 34.84 2.52
4686 4834 5.333645 CGCTAGCATCCATATGACAAAGAAC 60.334 44.000 16.45 0.00 34.84 3.01
4687 4835 5.049129 GCTAGCATCCATATGACAAAGAACC 60.049 44.000 10.63 0.00 34.84 3.62
4688 4836 4.210331 AGCATCCATATGACAAAGAACCC 58.790 43.478 3.65 0.00 34.84 4.11
4689 4837 3.003689 GCATCCATATGACAAAGAACCCG 59.996 47.826 3.65 0.00 34.84 5.28
4690 4838 3.275617 TCCATATGACAAAGAACCCGG 57.724 47.619 3.65 0.00 0.00 5.73
4691 4839 2.092646 TCCATATGACAAAGAACCCGGG 60.093 50.000 22.25 22.25 0.00 5.73
4692 4840 1.676006 CATATGACAAAGAACCCGGGC 59.324 52.381 24.08 4.85 0.00 6.13
4693 4841 0.988832 TATGACAAAGAACCCGGGCT 59.011 50.000 24.08 8.98 0.00 5.19
4694 4842 0.609131 ATGACAAAGAACCCGGGCTG 60.609 55.000 24.08 12.90 0.00 4.85
4695 4843 1.072505 GACAAAGAACCCGGGCTGA 59.927 57.895 24.08 0.00 0.00 4.26
4696 4844 1.228154 ACAAAGAACCCGGGCTGAC 60.228 57.895 24.08 9.69 0.00 3.51
4697 4845 1.228124 CAAAGAACCCGGGCTGACA 60.228 57.895 24.08 0.00 0.00 3.58
4698 4846 0.609131 CAAAGAACCCGGGCTGACAT 60.609 55.000 24.08 0.00 0.00 3.06
4699 4847 0.609131 AAAGAACCCGGGCTGACATG 60.609 55.000 24.08 0.00 0.00 3.21
4700 4848 1.488705 AAGAACCCGGGCTGACATGA 61.489 55.000 24.08 0.00 0.00 3.07
4701 4849 1.745489 GAACCCGGGCTGACATGAC 60.745 63.158 24.08 0.00 0.00 3.06
4702 4850 2.185310 GAACCCGGGCTGACATGACT 62.185 60.000 24.08 0.00 0.00 3.41
4703 4851 0.907704 AACCCGGGCTGACATGACTA 60.908 55.000 24.08 0.00 0.00 2.59
4704 4852 1.330655 ACCCGGGCTGACATGACTAG 61.331 60.000 24.08 0.00 0.00 2.57
4705 4853 1.330655 CCCGGGCTGACATGACTAGT 61.331 60.000 8.08 0.00 0.00 2.57
4706 4854 0.103208 CCGGGCTGACATGACTAGTC 59.897 60.000 16.32 16.32 36.55 2.59
4707 4855 0.248661 CGGGCTGACATGACTAGTCG 60.249 60.000 17.85 7.27 38.83 4.18
4708 4856 0.818296 GGGCTGACATGACTAGTCGT 59.182 55.000 17.85 15.05 38.83 4.34
4710 4858 1.472878 GGCTGACATGACTAGTCGTGA 59.527 52.381 39.23 23.41 46.68 4.35
4711 4859 2.094700 GGCTGACATGACTAGTCGTGAA 60.095 50.000 39.23 27.90 46.68 3.18
4712 4860 2.917971 GCTGACATGACTAGTCGTGAAC 59.082 50.000 39.23 31.21 46.68 3.18
4713 4861 3.502920 CTGACATGACTAGTCGTGAACC 58.497 50.000 39.23 28.42 46.68 3.62
4714 4862 2.230508 TGACATGACTAGTCGTGAACCC 59.769 50.000 39.23 26.60 46.68 4.11
4715 4863 2.230508 GACATGACTAGTCGTGAACCCA 59.769 50.000 39.23 14.42 46.68 4.51
4716 4864 2.631062 ACATGACTAGTCGTGAACCCAA 59.369 45.455 39.23 13.16 46.68 4.12
4717 4865 3.260884 ACATGACTAGTCGTGAACCCAAT 59.739 43.478 39.23 20.13 46.68 3.16
4718 4866 3.313012 TGACTAGTCGTGAACCCAATG 57.687 47.619 17.85 0.00 0.00 2.82
4719 4867 2.631062 TGACTAGTCGTGAACCCAATGT 59.369 45.455 17.85 0.00 0.00 2.71
4720 4868 2.993899 GACTAGTCGTGAACCCAATGTG 59.006 50.000 7.22 0.00 0.00 3.21
4721 4869 2.289444 ACTAGTCGTGAACCCAATGTGG 60.289 50.000 0.00 0.00 37.25 4.17
4722 4870 0.889186 AGTCGTGAACCCAATGTGGC 60.889 55.000 0.00 0.00 35.79 5.01
4723 4871 1.149401 TCGTGAACCCAATGTGGCA 59.851 52.632 0.00 0.00 35.79 4.92
4724 4872 1.169661 TCGTGAACCCAATGTGGCAC 61.170 55.000 11.55 11.55 35.79 5.01
4725 4873 1.172180 CGTGAACCCAATGTGGCACT 61.172 55.000 19.83 1.19 35.79 4.40
4726 4874 1.880221 CGTGAACCCAATGTGGCACTA 60.880 52.381 19.83 5.69 35.79 2.74
4727 4875 2.235016 GTGAACCCAATGTGGCACTAA 58.765 47.619 19.83 0.00 35.79 2.24
4728 4876 2.030274 GTGAACCCAATGTGGCACTAAC 60.030 50.000 19.83 0.00 35.79 2.34
4729 4877 2.158534 TGAACCCAATGTGGCACTAACT 60.159 45.455 19.83 0.00 35.79 2.24
4730 4878 2.675658 ACCCAATGTGGCACTAACTT 57.324 45.000 19.83 4.48 35.79 2.66
4731 4879 3.799432 ACCCAATGTGGCACTAACTTA 57.201 42.857 19.83 0.00 35.79 2.24
4732 4880 3.418047 ACCCAATGTGGCACTAACTTAC 58.582 45.455 19.83 0.00 35.79 2.34
4733 4881 3.181438 ACCCAATGTGGCACTAACTTACA 60.181 43.478 19.83 0.00 35.79 2.41
4734 4882 3.440173 CCCAATGTGGCACTAACTTACAG 59.560 47.826 19.83 0.00 35.79 2.74
4735 4883 3.440173 CCAATGTGGCACTAACTTACAGG 59.560 47.826 19.83 4.19 0.00 4.00
4736 4884 2.851263 TGTGGCACTAACTTACAGGG 57.149 50.000 19.83 0.00 0.00 4.45
4737 4885 2.331166 TGTGGCACTAACTTACAGGGA 58.669 47.619 19.83 0.00 0.00 4.20
4738 4886 2.038033 TGTGGCACTAACTTACAGGGAC 59.962 50.000 19.83 0.00 0.00 4.46
4739 4887 2.038033 GTGGCACTAACTTACAGGGACA 59.962 50.000 11.13 0.00 29.73 4.02
4740 4888 2.301870 TGGCACTAACTTACAGGGACAG 59.698 50.000 0.00 0.00 26.12 3.51
4741 4889 2.565834 GGCACTAACTTACAGGGACAGA 59.434 50.000 0.00 0.00 0.00 3.41
4742 4890 3.586892 GCACTAACTTACAGGGACAGAC 58.413 50.000 0.00 0.00 0.00 3.51
4743 4891 3.006537 GCACTAACTTACAGGGACAGACA 59.993 47.826 0.00 0.00 0.00 3.41
4744 4892 4.322801 GCACTAACTTACAGGGACAGACAT 60.323 45.833 0.00 0.00 0.00 3.06
4745 4893 5.105473 GCACTAACTTACAGGGACAGACATA 60.105 44.000 0.00 0.00 0.00 2.29
4746 4894 6.331061 CACTAACTTACAGGGACAGACATAC 58.669 44.000 0.00 0.00 0.00 2.39
4747 4895 6.014647 ACTAACTTACAGGGACAGACATACA 58.985 40.000 0.00 0.00 0.00 2.29
4748 4896 6.668283 ACTAACTTACAGGGACAGACATACAT 59.332 38.462 0.00 0.00 0.00 2.29
4749 4897 5.344743 ACTTACAGGGACAGACATACATG 57.655 43.478 0.00 0.00 0.00 3.21
4750 4898 5.023452 ACTTACAGGGACAGACATACATGA 58.977 41.667 0.00 0.00 0.00 3.07
4751 4899 3.895232 ACAGGGACAGACATACATGAC 57.105 47.619 0.00 0.00 0.00 3.06
4752 4900 2.501723 ACAGGGACAGACATACATGACC 59.498 50.000 0.00 0.00 0.00 4.02
4753 4901 2.622064 GGGACAGACATACATGACCC 57.378 55.000 0.00 0.00 42.67 4.46
4754 4902 1.837439 GGGACAGACATACATGACCCA 59.163 52.381 0.00 0.00 46.62 4.51
4755 4903 2.158900 GGGACAGACATACATGACCCAG 60.159 54.545 0.00 0.00 46.62 4.45
4756 4904 2.555199 GACAGACATACATGACCCAGC 58.445 52.381 0.00 0.00 0.00 4.85
4757 4905 1.908619 ACAGACATACATGACCCAGCA 59.091 47.619 0.00 0.00 0.00 4.41
4758 4906 2.305635 ACAGACATACATGACCCAGCAA 59.694 45.455 0.00 0.00 0.00 3.91
4759 4907 2.679837 CAGACATACATGACCCAGCAAC 59.320 50.000 0.00 0.00 0.00 4.17
4760 4908 1.665679 GACATACATGACCCAGCAACG 59.334 52.381 0.00 0.00 0.00 4.10
4761 4909 1.277842 ACATACATGACCCAGCAACGA 59.722 47.619 0.00 0.00 0.00 3.85
4762 4910 2.290008 ACATACATGACCCAGCAACGAA 60.290 45.455 0.00 0.00 0.00 3.85
4763 4911 1.803334 TACATGACCCAGCAACGAAC 58.197 50.000 0.00 0.00 0.00 3.95
4764 4912 1.227999 ACATGACCCAGCAACGAACG 61.228 55.000 0.00 0.00 0.00 3.95
4765 4913 1.070786 ATGACCCAGCAACGAACGT 59.929 52.632 0.00 0.00 0.00 3.99
4766 4914 1.227999 ATGACCCAGCAACGAACGTG 61.228 55.000 0.00 0.00 0.00 4.49
4767 4915 1.885850 GACCCAGCAACGAACGTGT 60.886 57.895 0.00 0.00 0.00 4.49
4768 4916 1.828331 GACCCAGCAACGAACGTGTC 61.828 60.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.095860 TCCATCGATCAAAAGCAGATCAATTT 59.904 34.615 0.00 0.00 41.49 1.82
57 58 3.317993 TGATCTTCAGATGGCGACGATTA 59.682 43.478 0.00 0.00 34.37 1.75
60 62 1.102978 TGATCTTCAGATGGCGACGA 58.897 50.000 0.00 0.00 34.37 4.20
79 81 1.274703 ATCCTTGGTGGCGGTCATCT 61.275 55.000 0.00 0.00 35.26 2.90
82 84 2.668632 GATCCTTGGTGGCGGTCA 59.331 61.111 0.00 0.00 35.26 4.02
85 87 2.438434 GTGGATCCTTGGTGGCGG 60.438 66.667 14.23 0.00 35.26 6.13
109 113 1.282875 CGCGGTAGCATCGAGATGA 59.717 57.895 16.45 0.00 45.49 2.92
111 115 2.049985 GCGCGGTAGCATCGAGAT 60.050 61.111 8.83 0.00 45.49 2.75
137 141 1.379977 TGGAGGCTCCTCGTTCGAT 60.380 57.895 32.28 0.00 43.59 3.59
141 145 3.003763 GGGTGGAGGCTCCTCGTT 61.004 66.667 32.28 0.00 43.59 3.85
152 156 2.443952 ATCGAGATGGCGGGTGGA 60.444 61.111 0.00 0.00 0.00 4.02
172 176 2.232298 GACGGGGCCTCTCTGTTCTG 62.232 65.000 0.00 0.00 0.00 3.02
209 213 1.022735 GGCCATCGTCGAGAGAAGTA 58.977 55.000 0.00 0.00 45.01 2.24
234 238 1.142748 CTGCTCCTCCTTACAGCCG 59.857 63.158 0.00 0.00 31.68 5.52
240 244 1.596934 CGTTGCCTGCTCCTCCTTA 59.403 57.895 0.00 0.00 0.00 2.69
254 261 4.653888 AAACTCCGGCCCCCGTTG 62.654 66.667 0.00 0.00 46.80 4.10
324 331 5.065218 ACATGAGCGACCATTCATTTAAGTC 59.935 40.000 0.00 0.00 31.91 3.01
455 465 3.980022 TCCATGGAATCTAATGGGCACTA 59.020 43.478 13.46 0.00 43.09 2.74
457 467 2.887152 GTCCATGGAATCTAATGGGCAC 59.113 50.000 18.20 0.00 45.97 5.01
482 497 1.699083 CCTTTTGGCATTGGAAGGGTT 59.301 47.619 10.06 0.00 35.98 4.11
579 601 2.316108 GTGGGTTGAAAGTGATTGGGT 58.684 47.619 0.00 0.00 0.00 4.51
629 652 5.394553 GGAAGGAAGGGCAATGATTAACTTG 60.395 44.000 0.00 0.00 0.00 3.16
763 791 1.691976 TGAGCCGTGGAAGAAGAAGAA 59.308 47.619 0.00 0.00 0.00 2.52
807 847 1.568504 TTATCTGTCTGGTCCGGCTT 58.431 50.000 0.00 0.00 0.00 4.35
808 848 1.207329 GTTTATCTGTCTGGTCCGGCT 59.793 52.381 0.00 0.00 0.00 5.52
896 936 2.243221 CAGGTCAAGGAGGATGGGATTT 59.757 50.000 0.00 0.00 0.00 2.17
946 986 1.678970 GCCGGCCTGTTTCTTGGAT 60.679 57.895 18.11 0.00 0.00 3.41
1034 1074 3.749064 GACCAGGCGTCTCTGCGA 61.749 66.667 0.00 0.00 38.57 5.10
1228 1271 6.650427 ATTGTAAGTATGGATCGAGCAGTA 57.350 37.500 1.84 0.00 0.00 2.74
1231 1274 5.985530 CAGAATTGTAAGTATGGATCGAGCA 59.014 40.000 1.84 0.00 0.00 4.26
1243 1286 5.238432 TGATTGCACGAACAGAATTGTAAGT 59.762 36.000 0.00 0.00 36.23 2.24
1251 1306 3.814842 ACAATCTGATTGCACGAACAGAA 59.185 39.130 25.96 1.65 43.98 3.02
1266 1321 6.563381 GCTCAATTCACAAAGCAAACAATCTG 60.563 38.462 0.00 0.00 34.86 2.90
1269 1324 5.235616 CAGCTCAATTCACAAAGCAAACAAT 59.764 36.000 0.00 0.00 37.22 2.71
1273 1332 4.613944 CTCAGCTCAATTCACAAAGCAAA 58.386 39.130 0.00 0.00 37.22 3.68
1280 1339 1.162698 GCAGCTCAGCTCAATTCACA 58.837 50.000 0.00 0.00 36.40 3.58
1311 1370 1.664017 CTCGATGATCCTGCAGGCG 60.664 63.158 28.91 23.76 34.44 5.52
1440 1500 1.153745 GAGGTTGATGAGCGACGCT 60.154 57.895 24.77 24.77 43.88 5.07
1540 1600 3.827898 CTCTGGTCCCGCCGTCTC 61.828 72.222 0.00 0.00 41.21 3.36
1559 1627 2.818751 ATTAATTCCCCGACCAGCAA 57.181 45.000 0.00 0.00 0.00 3.91
1586 1654 3.134623 CCCAGTACCTGAATGCACAGATA 59.865 47.826 5.92 0.00 39.94 1.98
1769 1837 9.918630 GGCTTTATTATTAGTACCTTGACGATA 57.081 33.333 0.00 0.00 0.00 2.92
1800 1868 4.713792 ACATGAACAGGAGAAGAAAGGT 57.286 40.909 0.00 0.00 0.00 3.50
1811 1885 1.538047 CCTGGTGGAACATGAACAGG 58.462 55.000 0.00 0.00 44.52 4.00
1826 1900 3.007182 ACACATTTCCAATTTCAGCCTGG 59.993 43.478 0.00 0.00 0.00 4.45
1827 1901 3.991773 CACACATTTCCAATTTCAGCCTG 59.008 43.478 0.00 0.00 0.00 4.85
1828 1902 3.896888 TCACACATTTCCAATTTCAGCCT 59.103 39.130 0.00 0.00 0.00 4.58
2148 2233 2.048222 CTCCTCCAGCGCGAACAA 60.048 61.111 12.10 0.00 0.00 2.83
3795 3897 6.818142 ACAGTAATAATTCCCAAAATTGCTGC 59.182 34.615 11.90 0.00 42.34 5.25
3798 3900 7.220108 GTCGACAGTAATAATTCCCAAAATTGC 59.780 37.037 11.55 0.00 0.00 3.56
3799 3901 8.240682 TGTCGACAGTAATAATTCCCAAAATTG 58.759 33.333 15.76 0.00 0.00 2.32
3800 3902 8.343168 TGTCGACAGTAATAATTCCCAAAATT 57.657 30.769 15.76 0.00 0.00 1.82
3801 3903 7.931578 TGTCGACAGTAATAATTCCCAAAAT 57.068 32.000 15.76 0.00 0.00 1.82
3874 3981 7.465116 AGAATGAGGAGGAAAAGAAAGAATCA 58.535 34.615 0.00 0.00 0.00 2.57
3889 3996 6.605594 ACCTACTTACAGAGAAGAATGAGGAG 59.394 42.308 0.00 0.00 0.00 3.69
3925 4032 6.377327 AAGAAAAGAAAAATGAGACGCAGA 57.623 33.333 0.00 0.00 0.00 4.26
3926 4033 5.338035 CGAAGAAAAGAAAAATGAGACGCAG 59.662 40.000 0.00 0.00 0.00 5.18
3970 4081 2.224744 TGTGTGATTGTACATGGGCAGT 60.225 45.455 0.00 0.00 32.43 4.40
3982 4093 2.355197 TCTTGGGCGTATGTGTGATTG 58.645 47.619 0.00 0.00 0.00 2.67
4178 4291 9.073475 ACAAAAGCATAATAGAACCAGTAAACA 57.927 29.630 0.00 0.00 0.00 2.83
4216 4329 9.679661 TTTGACTATTCTTTCCAGCATATACAA 57.320 29.630 0.00 0.00 0.00 2.41
4291 4409 6.634837 CGCATCTCAGTCTGTATGTAGTTTAG 59.365 42.308 15.00 0.00 0.00 1.85
4298 4416 3.694566 TGTACGCATCTCAGTCTGTATGT 59.305 43.478 15.00 4.81 0.00 2.29
4303 4421 2.636768 TGTGTACGCATCTCAGTCTG 57.363 50.000 4.65 0.00 0.00 3.51
4305 4423 3.150848 TCATGTGTACGCATCTCAGTC 57.849 47.619 18.89 0.00 0.00 3.51
4308 4426 5.901552 TCTAAATCATGTGTACGCATCTCA 58.098 37.500 18.89 6.79 0.00 3.27
4309 4427 6.074088 CCTTCTAAATCATGTGTACGCATCTC 60.074 42.308 18.89 0.00 0.00 2.75
4311 4429 5.753438 TCCTTCTAAATCATGTGTACGCATC 59.247 40.000 18.89 0.00 0.00 3.91
4346 4493 6.260936 CCTCCGTTCACAAATATAAGATGCTT 59.739 38.462 0.00 0.00 0.00 3.91
4524 4672 1.913419 TGTGACTTAGGATTGGGGTCC 59.087 52.381 0.00 0.00 38.62 4.46
4525 4673 2.355818 GGTGTGACTTAGGATTGGGGTC 60.356 54.545 0.00 0.00 0.00 4.46
4526 4674 1.633945 GGTGTGACTTAGGATTGGGGT 59.366 52.381 0.00 0.00 0.00 4.95
4527 4675 1.406887 CGGTGTGACTTAGGATTGGGG 60.407 57.143 0.00 0.00 0.00 4.96
4528 4676 1.553248 TCGGTGTGACTTAGGATTGGG 59.447 52.381 0.00 0.00 0.00 4.12
4529 4677 3.133003 AGATCGGTGTGACTTAGGATTGG 59.867 47.826 0.00 0.00 0.00 3.16
4530 4678 4.392921 AGATCGGTGTGACTTAGGATTG 57.607 45.455 0.00 0.00 0.00 2.67
4531 4679 4.038162 GCTAGATCGGTGTGACTTAGGATT 59.962 45.833 0.00 0.00 0.00 3.01
4532 4680 3.570550 GCTAGATCGGTGTGACTTAGGAT 59.429 47.826 0.00 0.00 0.00 3.24
4533 4681 2.950309 GCTAGATCGGTGTGACTTAGGA 59.050 50.000 0.00 0.00 0.00 2.94
4534 4682 2.688446 TGCTAGATCGGTGTGACTTAGG 59.312 50.000 0.00 0.00 0.00 2.69
4535 4683 4.202060 ACATGCTAGATCGGTGTGACTTAG 60.202 45.833 0.00 0.00 0.00 2.18
4536 4684 3.699538 ACATGCTAGATCGGTGTGACTTA 59.300 43.478 0.00 0.00 0.00 2.24
4537 4685 2.497675 ACATGCTAGATCGGTGTGACTT 59.502 45.455 0.00 0.00 0.00 3.01
4538 4686 2.103373 ACATGCTAGATCGGTGTGACT 58.897 47.619 0.00 0.00 0.00 3.41
4539 4687 2.586258 ACATGCTAGATCGGTGTGAC 57.414 50.000 0.00 0.00 0.00 3.67
4540 4688 3.445805 TGTTACATGCTAGATCGGTGTGA 59.554 43.478 0.00 0.00 0.00 3.58
4541 4689 3.551890 GTGTTACATGCTAGATCGGTGTG 59.448 47.826 0.00 0.00 0.00 3.82
4542 4690 3.194755 TGTGTTACATGCTAGATCGGTGT 59.805 43.478 0.00 0.00 0.00 4.16
4543 4691 3.780902 TGTGTTACATGCTAGATCGGTG 58.219 45.455 0.00 0.00 0.00 4.94
4544 4692 4.099419 TGATGTGTTACATGCTAGATCGGT 59.901 41.667 0.00 0.00 39.27 4.69
4545 4693 4.620982 TGATGTGTTACATGCTAGATCGG 58.379 43.478 0.00 0.00 39.27 4.18
4546 4694 7.756722 TGATATGATGTGTTACATGCTAGATCG 59.243 37.037 0.00 0.00 39.27 3.69
4547 4695 8.867935 GTGATATGATGTGTTACATGCTAGATC 58.132 37.037 0.00 0.00 39.27 2.75
4548 4696 8.591940 AGTGATATGATGTGTTACATGCTAGAT 58.408 33.333 0.00 0.00 39.27 1.98
4549 4697 7.955918 AGTGATATGATGTGTTACATGCTAGA 58.044 34.615 0.00 0.00 39.27 2.43
4550 4698 8.599055 AAGTGATATGATGTGTTACATGCTAG 57.401 34.615 0.00 0.00 39.27 3.42
4551 4699 8.829612 CAAAGTGATATGATGTGTTACATGCTA 58.170 33.333 0.00 0.00 39.27 3.49
4552 4700 7.680350 GCAAAGTGATATGATGTGTTACATGCT 60.680 37.037 0.00 0.00 39.27 3.79
4553 4701 6.415867 GCAAAGTGATATGATGTGTTACATGC 59.584 38.462 0.00 0.00 39.27 4.06
4554 4702 6.630045 CGCAAAGTGATATGATGTGTTACATG 59.370 38.462 0.00 0.00 39.27 3.21
4555 4703 6.238456 CCGCAAAGTGATATGATGTGTTACAT 60.238 38.462 0.00 0.00 42.43 2.29
4556 4704 5.064579 CCGCAAAGTGATATGATGTGTTACA 59.935 40.000 0.00 0.00 0.00 2.41
4557 4705 5.501715 CCGCAAAGTGATATGATGTGTTAC 58.498 41.667 0.00 0.00 0.00 2.50
4558 4706 4.035091 GCCGCAAAGTGATATGATGTGTTA 59.965 41.667 0.00 0.00 0.00 2.41
4559 4707 3.181497 GCCGCAAAGTGATATGATGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
4560 4708 2.355756 GCCGCAAAGTGATATGATGTGT 59.644 45.455 0.00 0.00 0.00 3.72
4561 4709 2.287188 GGCCGCAAAGTGATATGATGTG 60.287 50.000 0.00 0.00 0.00 3.21
4562 4710 1.949525 GGCCGCAAAGTGATATGATGT 59.050 47.619 0.00 0.00 0.00 3.06
4563 4711 2.224606 AGGCCGCAAAGTGATATGATG 58.775 47.619 0.00 0.00 0.00 3.07
4564 4712 2.158769 TGAGGCCGCAAAGTGATATGAT 60.159 45.455 6.75 0.00 0.00 2.45
4565 4713 1.209261 TGAGGCCGCAAAGTGATATGA 59.791 47.619 6.75 0.00 0.00 2.15
4566 4714 1.331756 GTGAGGCCGCAAAGTGATATG 59.668 52.381 12.05 0.00 0.00 1.78
4567 4715 1.668419 GTGAGGCCGCAAAGTGATAT 58.332 50.000 12.05 0.00 0.00 1.63
4568 4716 0.739462 CGTGAGGCCGCAAAGTGATA 60.739 55.000 12.05 0.00 0.00 2.15
4569 4717 2.034879 CGTGAGGCCGCAAAGTGAT 61.035 57.895 12.05 0.00 0.00 3.06
4570 4718 2.089887 TACGTGAGGCCGCAAAGTGA 62.090 55.000 22.82 9.16 0.00 3.41
4571 4719 1.666553 TACGTGAGGCCGCAAAGTG 60.667 57.895 22.82 11.92 0.00 3.16
4572 4720 1.666872 GTACGTGAGGCCGCAAAGT 60.667 57.895 12.05 16.81 0.00 2.66
4573 4721 2.726691 CGTACGTGAGGCCGCAAAG 61.727 63.158 12.05 11.31 0.00 2.77
4574 4722 2.735478 CGTACGTGAGGCCGCAAA 60.735 61.111 12.05 0.00 0.00 3.68
4575 4723 4.728102 CCGTACGTGAGGCCGCAA 62.728 66.667 12.05 0.00 0.00 4.85
4577 4725 2.618312 AATACCGTACGTGAGGCCGC 62.618 60.000 15.21 0.00 0.00 6.53
4578 4726 0.179129 AAATACCGTACGTGAGGCCG 60.179 55.000 15.21 0.00 0.00 6.13
4579 4727 1.564207 GAAATACCGTACGTGAGGCC 58.436 55.000 15.21 0.00 0.00 5.19
4580 4728 1.135024 TGGAAATACCGTACGTGAGGC 60.135 52.381 15.21 0.00 42.61 4.70
4581 4729 2.533266 GTGGAAATACCGTACGTGAGG 58.467 52.381 15.21 3.60 42.61 3.86
4582 4730 2.179589 CGTGGAAATACCGTACGTGAG 58.820 52.381 15.21 1.10 42.61 3.51
4583 4731 1.135431 CCGTGGAAATACCGTACGTGA 60.135 52.381 15.21 1.23 42.61 4.35
4584 4732 1.270971 CCGTGGAAATACCGTACGTG 58.729 55.000 15.21 8.32 42.61 4.49
4585 4733 0.173255 CCCGTGGAAATACCGTACGT 59.827 55.000 15.21 5.08 42.61 3.57
4586 4734 0.173255 ACCCGTGGAAATACCGTACG 59.827 55.000 8.69 8.69 42.61 3.67
4587 4735 1.066929 ACACCCGTGGAAATACCGTAC 60.067 52.381 0.00 0.00 42.61 3.67
4588 4736 1.204467 GACACCCGTGGAAATACCGTA 59.796 52.381 0.00 0.00 42.61 4.02
4589 4737 0.037046 GACACCCGTGGAAATACCGT 60.037 55.000 0.00 0.00 42.61 4.83
4590 4738 0.037139 TGACACCCGTGGAAATACCG 60.037 55.000 0.00 0.00 42.61 4.02
4591 4739 1.445871 GTGACACCCGTGGAAATACC 58.554 55.000 0.00 0.00 39.54 2.73
4592 4740 1.002773 AGGTGACACCCGTGGAAATAC 59.997 52.381 21.32 0.00 39.75 1.89
4593 4741 1.354101 AGGTGACACCCGTGGAAATA 58.646 50.000 21.32 0.00 39.75 1.40
4594 4742 0.476771 AAGGTGACACCCGTGGAAAT 59.523 50.000 21.32 0.00 39.75 2.17
4595 4743 1.129917 TAAGGTGACACCCGTGGAAA 58.870 50.000 21.32 0.00 39.75 3.13
4596 4744 0.393820 GTAAGGTGACACCCGTGGAA 59.606 55.000 21.32 0.00 39.75 3.53
4597 4745 1.474332 GGTAAGGTGACACCCGTGGA 61.474 60.000 21.32 0.00 39.75 4.02
4598 4746 1.004200 GGTAAGGTGACACCCGTGG 60.004 63.158 21.32 0.00 39.75 4.94
4599 4747 0.320421 CAGGTAAGGTGACACCCGTG 60.320 60.000 21.32 13.29 39.75 4.94
4600 4748 1.477685 CCAGGTAAGGTGACACCCGT 61.478 60.000 21.32 12.03 39.75 5.28
4601 4749 1.295423 CCAGGTAAGGTGACACCCG 59.705 63.158 21.32 3.22 39.75 5.28
4602 4750 1.002502 GCCAGGTAAGGTGACACCC 60.003 63.158 21.32 5.91 39.75 4.61
4603 4751 1.002502 GGCCAGGTAAGGTGACACC 60.003 63.158 17.43 17.43 38.99 4.16
4604 4752 1.002502 GGGCCAGGTAAGGTGACAC 60.003 63.158 4.39 0.00 0.00 3.67
4605 4753 2.589157 CGGGCCAGGTAAGGTGACA 61.589 63.158 4.39 0.00 0.00 3.58
4606 4754 2.267961 CGGGCCAGGTAAGGTGAC 59.732 66.667 4.39 0.00 0.00 3.67
4607 4755 3.006728 CCGGGCCAGGTAAGGTGA 61.007 66.667 14.74 0.00 0.00 4.02
4608 4756 3.006728 TCCGGGCCAGGTAAGGTG 61.007 66.667 22.25 0.00 0.00 4.00
4609 4757 3.007323 GTCCGGGCCAGGTAAGGT 61.007 66.667 22.25 0.00 0.00 3.50
4610 4758 3.793888 GGTCCGGGCCAGGTAAGG 61.794 72.222 23.50 6.07 0.00 2.69
4611 4759 4.157120 CGGTCCGGGCCAGGTAAG 62.157 72.222 27.89 2.84 0.00 2.34
4622 4770 1.843734 TAAAAGGCGCAAACGGTCCG 61.844 55.000 10.83 10.48 40.57 4.79
4623 4771 0.109919 CTAAAAGGCGCAAACGGTCC 60.110 55.000 10.83 0.00 40.57 4.46
4624 4772 0.728129 GCTAAAAGGCGCAAACGGTC 60.728 55.000 10.83 0.00 40.57 4.79
4625 4773 1.170290 AGCTAAAAGGCGCAAACGGT 61.170 50.000 10.83 0.00 40.57 4.83
4626 4774 0.454452 GAGCTAAAAGGCGCAAACGG 60.454 55.000 10.83 0.00 40.57 4.44
4627 4775 0.237235 TGAGCTAAAAGGCGCAAACG 59.763 50.000 10.83 0.00 38.90 3.60
4628 4776 1.686464 GTGAGCTAAAAGGCGCAAAC 58.314 50.000 10.83 0.00 42.91 2.93
4629 4777 0.237235 CGTGAGCTAAAAGGCGCAAA 59.763 50.000 10.83 0.00 42.91 3.68
4630 4778 0.882927 ACGTGAGCTAAAAGGCGCAA 60.883 50.000 10.83 0.00 42.91 4.85
4631 4779 0.038067 TACGTGAGCTAAAAGGCGCA 60.038 50.000 10.83 0.00 39.49 6.09
4632 4780 1.287425 ATACGTGAGCTAAAAGGCGC 58.713 50.000 0.00 0.00 37.29 6.53
4633 4781 4.295870 TCATATACGTGAGCTAAAAGGCG 58.704 43.478 0.00 0.00 37.29 5.52
4634 4782 7.062371 CACTATCATATACGTGAGCTAAAAGGC 59.938 40.741 0.00 0.00 0.00 4.35
4635 4783 7.062371 GCACTATCATATACGTGAGCTAAAAGG 59.938 40.741 0.00 0.00 0.00 3.11
4636 4784 7.062371 GGCACTATCATATACGTGAGCTAAAAG 59.938 40.741 0.00 0.00 0.00 2.27
4637 4785 6.866770 GGCACTATCATATACGTGAGCTAAAA 59.133 38.462 0.00 0.00 0.00 1.52
4638 4786 6.387465 GGCACTATCATATACGTGAGCTAAA 58.613 40.000 0.00 0.00 0.00 1.85
4639 4787 5.391629 CGGCACTATCATATACGTGAGCTAA 60.392 44.000 0.00 0.00 0.00 3.09
4640 4788 4.094442 CGGCACTATCATATACGTGAGCTA 59.906 45.833 0.00 0.00 0.00 3.32
4641 4789 3.119814 CGGCACTATCATATACGTGAGCT 60.120 47.826 0.00 0.00 0.00 4.09
4642 4790 3.172050 CGGCACTATCATATACGTGAGC 58.828 50.000 0.00 0.00 0.00 4.26
4643 4791 3.119814 AGCGGCACTATCATATACGTGAG 60.120 47.826 1.45 0.00 0.00 3.51
4644 4792 2.817844 AGCGGCACTATCATATACGTGA 59.182 45.455 1.45 0.00 0.00 4.35
4645 4793 3.217599 AGCGGCACTATCATATACGTG 57.782 47.619 1.45 0.00 0.00 4.49
4646 4794 3.181499 GCTAGCGGCACTATCATATACGT 60.181 47.826 0.00 0.00 41.35 3.57
4647 4795 3.364062 GCTAGCGGCACTATCATATACG 58.636 50.000 0.00 0.00 41.35 3.06
4660 4808 1.338105 TGTCATATGGATGCTAGCGGC 60.338 52.381 10.77 4.04 42.22 6.53
4661 4809 2.749280 TGTCATATGGATGCTAGCGG 57.251 50.000 10.77 0.00 32.62 5.52
4662 4810 4.309933 TCTTTGTCATATGGATGCTAGCG 58.690 43.478 10.77 0.00 32.62 4.26
4663 4811 5.049129 GGTTCTTTGTCATATGGATGCTAGC 60.049 44.000 8.10 8.10 32.62 3.42
4664 4812 5.471456 GGGTTCTTTGTCATATGGATGCTAG 59.529 44.000 2.13 0.00 32.62 3.42
4665 4813 5.376625 GGGTTCTTTGTCATATGGATGCTA 58.623 41.667 2.13 0.00 32.62 3.49
4666 4814 4.210331 GGGTTCTTTGTCATATGGATGCT 58.790 43.478 2.13 0.00 32.62 3.79
4667 4815 3.003689 CGGGTTCTTTGTCATATGGATGC 59.996 47.826 2.13 0.00 32.62 3.91
4668 4816 3.565482 CCGGGTTCTTTGTCATATGGATG 59.435 47.826 2.13 0.00 0.00 3.51
4669 4817 3.435026 CCCGGGTTCTTTGTCATATGGAT 60.435 47.826 14.18 0.00 0.00 3.41
4670 4818 2.092646 CCCGGGTTCTTTGTCATATGGA 60.093 50.000 14.18 0.00 0.00 3.41
4671 4819 2.297701 CCCGGGTTCTTTGTCATATGG 58.702 52.381 14.18 0.00 0.00 2.74
4672 4820 1.676006 GCCCGGGTTCTTTGTCATATG 59.324 52.381 24.63 0.00 0.00 1.78
4673 4821 1.564348 AGCCCGGGTTCTTTGTCATAT 59.436 47.619 24.63 0.00 0.00 1.78
4674 4822 0.988832 AGCCCGGGTTCTTTGTCATA 59.011 50.000 24.63 0.00 0.00 2.15
4675 4823 0.609131 CAGCCCGGGTTCTTTGTCAT 60.609 55.000 24.63 0.00 0.00 3.06
4676 4824 1.228124 CAGCCCGGGTTCTTTGTCA 60.228 57.895 24.63 0.00 0.00 3.58
4677 4825 1.072505 TCAGCCCGGGTTCTTTGTC 59.927 57.895 24.63 1.65 0.00 3.18
4678 4826 1.228154 GTCAGCCCGGGTTCTTTGT 60.228 57.895 24.63 0.00 0.00 2.83
4679 4827 0.609131 ATGTCAGCCCGGGTTCTTTG 60.609 55.000 24.63 12.99 0.00 2.77
4680 4828 0.609131 CATGTCAGCCCGGGTTCTTT 60.609 55.000 24.63 0.00 0.00 2.52
4681 4829 1.002134 CATGTCAGCCCGGGTTCTT 60.002 57.895 24.63 2.33 0.00 2.52
4682 4830 1.918293 TCATGTCAGCCCGGGTTCT 60.918 57.895 24.63 8.89 0.00 3.01
4683 4831 1.745489 GTCATGTCAGCCCGGGTTC 60.745 63.158 24.63 6.10 0.00 3.62
4684 4832 0.907704 TAGTCATGTCAGCCCGGGTT 60.908 55.000 24.63 15.04 0.00 4.11
4685 4833 1.305802 TAGTCATGTCAGCCCGGGT 60.306 57.895 24.63 5.98 0.00 5.28
4686 4834 1.330655 ACTAGTCATGTCAGCCCGGG 61.331 60.000 19.09 19.09 0.00 5.73
4687 4835 0.103208 GACTAGTCATGTCAGCCCGG 59.897 60.000 18.20 0.00 34.80 5.73
4688 4836 0.248661 CGACTAGTCATGTCAGCCCG 60.249 60.000 22.37 1.38 34.37 6.13
4689 4837 0.818296 ACGACTAGTCATGTCAGCCC 59.182 55.000 22.37 0.00 34.37 5.19
4690 4838 1.472878 TCACGACTAGTCATGTCAGCC 59.527 52.381 22.37 0.00 34.37 4.85
4691 4839 2.917971 GTTCACGACTAGTCATGTCAGC 59.082 50.000 22.37 1.48 34.37 4.26
4692 4840 3.502920 GGTTCACGACTAGTCATGTCAG 58.497 50.000 22.37 7.59 34.37 3.51
4693 4841 2.230508 GGGTTCACGACTAGTCATGTCA 59.769 50.000 22.37 6.59 34.37 3.58
4694 4842 2.230508 TGGGTTCACGACTAGTCATGTC 59.769 50.000 22.37 14.05 0.00 3.06
4695 4843 2.244695 TGGGTTCACGACTAGTCATGT 58.755 47.619 22.37 10.36 0.00 3.21
4696 4844 3.313012 TTGGGTTCACGACTAGTCATG 57.687 47.619 22.37 17.77 0.00 3.07
4697 4845 3.260884 ACATTGGGTTCACGACTAGTCAT 59.739 43.478 22.37 4.34 0.00 3.06
4698 4846 2.631062 ACATTGGGTTCACGACTAGTCA 59.369 45.455 22.37 0.17 0.00 3.41
4699 4847 2.993899 CACATTGGGTTCACGACTAGTC 59.006 50.000 13.18 13.18 0.00 2.59
4700 4848 2.289444 CCACATTGGGTTCACGACTAGT 60.289 50.000 0.00 0.00 32.67 2.57
4701 4849 2.346803 CCACATTGGGTTCACGACTAG 58.653 52.381 0.00 0.00 32.67 2.57
4702 4850 1.609580 GCCACATTGGGTTCACGACTA 60.610 52.381 0.00 0.00 38.19 2.59
4703 4851 0.889186 GCCACATTGGGTTCACGACT 60.889 55.000 0.00 0.00 38.19 4.18
4704 4852 1.169661 TGCCACATTGGGTTCACGAC 61.170 55.000 0.00 0.00 38.19 4.34
4705 4853 1.149401 TGCCACATTGGGTTCACGA 59.851 52.632 0.00 0.00 38.19 4.35
4706 4854 1.172180 AGTGCCACATTGGGTTCACG 61.172 55.000 0.00 0.00 38.19 4.35
4707 4855 1.904287 TAGTGCCACATTGGGTTCAC 58.096 50.000 0.00 1.58 38.19 3.18
4708 4856 2.158534 AGTTAGTGCCACATTGGGTTCA 60.159 45.455 0.00 0.00 38.19 3.18
4709 4857 2.514803 AGTTAGTGCCACATTGGGTTC 58.485 47.619 0.00 0.00 38.19 3.62
4710 4858 2.675658 AGTTAGTGCCACATTGGGTT 57.324 45.000 0.00 0.00 38.19 4.11
4711 4859 2.675658 AAGTTAGTGCCACATTGGGT 57.324 45.000 0.00 0.00 38.19 4.51
4712 4860 3.417101 TGTAAGTTAGTGCCACATTGGG 58.583 45.455 0.00 0.00 38.19 4.12
4713 4861 3.440173 CCTGTAAGTTAGTGCCACATTGG 59.560 47.826 0.00 0.00 41.55 3.16
4714 4862 3.440173 CCCTGTAAGTTAGTGCCACATTG 59.560 47.826 0.00 0.00 0.00 2.82
4715 4863 3.329520 TCCCTGTAAGTTAGTGCCACATT 59.670 43.478 0.00 0.00 0.00 2.71
4716 4864 2.910319 TCCCTGTAAGTTAGTGCCACAT 59.090 45.455 0.00 0.00 0.00 3.21
4717 4865 2.038033 GTCCCTGTAAGTTAGTGCCACA 59.962 50.000 0.00 0.00 0.00 4.17
4718 4866 2.038033 TGTCCCTGTAAGTTAGTGCCAC 59.962 50.000 0.00 0.00 0.00 5.01
4719 4867 2.301870 CTGTCCCTGTAAGTTAGTGCCA 59.698 50.000 0.00 0.00 0.00 4.92
4720 4868 2.565834 TCTGTCCCTGTAAGTTAGTGCC 59.434 50.000 0.00 0.00 0.00 5.01
4721 4869 3.006537 TGTCTGTCCCTGTAAGTTAGTGC 59.993 47.826 0.00 0.00 0.00 4.40
4722 4870 4.866508 TGTCTGTCCCTGTAAGTTAGTG 57.133 45.455 0.00 0.00 0.00 2.74
4723 4871 6.014647 TGTATGTCTGTCCCTGTAAGTTAGT 58.985 40.000 0.00 0.00 0.00 2.24
4724 4872 6.525578 TGTATGTCTGTCCCTGTAAGTTAG 57.474 41.667 0.00 0.00 0.00 2.34
4725 4873 6.666113 TCATGTATGTCTGTCCCTGTAAGTTA 59.334 38.462 0.00 0.00 0.00 2.24
4726 4874 5.483937 TCATGTATGTCTGTCCCTGTAAGTT 59.516 40.000 0.00 0.00 0.00 2.66
4727 4875 5.023452 TCATGTATGTCTGTCCCTGTAAGT 58.977 41.667 0.00 0.00 0.00 2.24
4728 4876 5.352284 GTCATGTATGTCTGTCCCTGTAAG 58.648 45.833 0.00 0.00 0.00 2.34
4729 4877 4.161565 GGTCATGTATGTCTGTCCCTGTAA 59.838 45.833 0.00 0.00 0.00 2.41
4730 4878 3.704566 GGTCATGTATGTCTGTCCCTGTA 59.295 47.826 0.00 0.00 0.00 2.74
4731 4879 2.501723 GGTCATGTATGTCTGTCCCTGT 59.498 50.000 0.00 0.00 0.00 4.00
4732 4880 2.158900 GGGTCATGTATGTCTGTCCCTG 60.159 54.545 0.00 0.00 0.00 4.45
4733 4881 2.119495 GGGTCATGTATGTCTGTCCCT 58.881 52.381 0.00 0.00 0.00 4.20
4734 4882 1.837439 TGGGTCATGTATGTCTGTCCC 59.163 52.381 0.00 0.00 34.77 4.46
4735 4883 2.743183 GCTGGGTCATGTATGTCTGTCC 60.743 54.545 0.00 0.00 0.00 4.02
4736 4884 2.093500 TGCTGGGTCATGTATGTCTGTC 60.093 50.000 0.00 0.00 0.00 3.51
4737 4885 1.908619 TGCTGGGTCATGTATGTCTGT 59.091 47.619 0.00 0.00 0.00 3.41
4738 4886 2.679837 GTTGCTGGGTCATGTATGTCTG 59.320 50.000 0.00 0.00 0.00 3.51
4739 4887 2.677902 CGTTGCTGGGTCATGTATGTCT 60.678 50.000 0.00 0.00 0.00 3.41
4740 4888 1.665679 CGTTGCTGGGTCATGTATGTC 59.334 52.381 0.00 0.00 0.00 3.06
4741 4889 1.277842 TCGTTGCTGGGTCATGTATGT 59.722 47.619 0.00 0.00 0.00 2.29
4742 4890 2.022764 TCGTTGCTGGGTCATGTATG 57.977 50.000 0.00 0.00 0.00 2.39
4743 4891 2.356135 GTTCGTTGCTGGGTCATGTAT 58.644 47.619 0.00 0.00 0.00 2.29
4744 4892 1.803334 GTTCGTTGCTGGGTCATGTA 58.197 50.000 0.00 0.00 0.00 2.29
4745 4893 1.227999 CGTTCGTTGCTGGGTCATGT 61.228 55.000 0.00 0.00 0.00 3.21
4746 4894 1.227999 ACGTTCGTTGCTGGGTCATG 61.228 55.000 0.00 0.00 0.00 3.07
4747 4895 1.070786 ACGTTCGTTGCTGGGTCAT 59.929 52.632 0.00 0.00 0.00 3.06
4748 4896 1.885388 CACGTTCGTTGCTGGGTCA 60.885 57.895 0.00 0.00 0.00 4.02
4749 4897 1.828331 GACACGTTCGTTGCTGGGTC 61.828 60.000 0.00 0.00 0.00 4.46
4750 4898 1.885850 GACACGTTCGTTGCTGGGT 60.886 57.895 0.00 0.00 0.00 4.51
4751 4899 2.935955 GACACGTTCGTTGCTGGG 59.064 61.111 0.00 0.00 0.00 4.45
4752 4900 2.544359 CGACACGTTCGTTGCTGG 59.456 61.111 10.63 0.00 43.24 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.