Multiple sequence alignment - TraesCS6B01G125600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G125600 chr6B 100.000 6559 0 0 1 6559 120661746 120668304 0.000000e+00 12113
1 TraesCS6B01G125600 chr6D 94.127 4972 177 51 1583 6488 50749545 50744623 0.000000e+00 7457
2 TraesCS6B01G125600 chr6D 89.111 1203 82 35 389 1558 50750726 50749540 0.000000e+00 1450
3 TraesCS6B01G125600 chr6D 93.976 83 1 3 6480 6559 45665692 45665611 8.930000e-24 122
4 TraesCS6B01G125600 chr6A 93.897 3310 138 33 1941 5198 64312759 64316056 0.000000e+00 4935
5 TraesCS6B01G125600 chr6A 84.959 1210 87 44 391 1555 64311206 64312365 0.000000e+00 1138
6 TraesCS6B01G125600 chr6A 82.381 1243 121 47 5297 6483 64316105 64317305 0.000000e+00 992
7 TraesCS6B01G125600 chr6A 91.877 357 25 4 1583 1938 64312363 64312716 4.570000e-136 496
8 TraesCS6B01G125600 chr2B 81.737 668 73 27 5603 6241 181700760 181700113 4.540000e-141 512
9 TraesCS6B01G125600 chr2B 100.000 71 0 0 6489 6559 765218949 765218879 1.480000e-26 132
10 TraesCS6B01G125600 chr2B 82.540 126 19 3 229 354 18144591 18144469 2.500000e-19 108
11 TraesCS6B01G125600 chr1B 88.450 329 31 5 5603 5928 217555844 217555520 2.220000e-104 390
12 TraesCS6B01G125600 chr1B 83.478 345 22 16 5908 6241 217555506 217555186 8.320000e-74 289
13 TraesCS6B01G125600 chr5A 100.000 72 0 0 6488 6559 631741516 631741587 4.130000e-27 134
14 TraesCS6B01G125600 chr5A 98.611 72 1 0 6488 6559 680856216 680856145 1.920000e-25 128
15 TraesCS6B01G125600 chr7B 98.611 72 1 0 6488 6559 711497836 711497907 1.920000e-25 128
16 TraesCS6B01G125600 chr7B 83.721 129 18 2 227 355 239074814 239074939 1.160000e-22 119
17 TraesCS6B01G125600 chr4B 98.611 72 1 0 6488 6559 650953917 650953846 1.920000e-25 128
18 TraesCS6B01G125600 chr2D 98.611 72 1 0 6488 6559 628604747 628604676 1.920000e-25 128
19 TraesCS6B01G125600 chr2D 96.104 77 2 1 6483 6559 628602783 628602858 2.480000e-24 124
20 TraesCS6B01G125600 chr7A 97.297 74 2 0 6486 6559 664109657 664109730 6.900000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G125600 chr6B 120661746 120668304 6558 False 12113.00 12113 100.0000 1 6559 1 chr6B.!!$F1 6558
1 TraesCS6B01G125600 chr6D 50744623 50750726 6103 True 4453.50 7457 91.6190 389 6488 2 chr6D.!!$R2 6099
2 TraesCS6B01G125600 chr6A 64311206 64317305 6099 False 1890.25 4935 88.2785 391 6483 4 chr6A.!!$F1 6092
3 TraesCS6B01G125600 chr2B 181700113 181700760 647 True 512.00 512 81.7370 5603 6241 1 chr2B.!!$R2 638
4 TraesCS6B01G125600 chr1B 217555186 217555844 658 True 339.50 390 85.9640 5603 6241 2 chr1B.!!$R1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.036388 ACATCGATCCTGTTTGCCGT 60.036 50.000 0.00 0.0 0.00 5.68 F
207 208 0.243636 AGCCCGCATACAAGTTTTGC 59.756 50.000 0.00 0.0 0.00 3.68 F
1285 1337 0.318869 TTTTTCGCCGCTGTCTCGTA 60.319 50.000 0.00 0.0 0.00 3.43 F
2100 2217 0.038251 TACTGTCTGCCAAGCACTCG 60.038 55.000 0.00 0.0 33.79 4.18 F
2453 2570 1.062587 CAGGCGCTAATTTTGGACGAG 59.937 52.381 7.64 0.0 0.00 4.18 F
3680 3832 1.338200 GGTACTTGCACCTGTCCTGAG 60.338 57.143 0.00 0.0 35.55 3.35 F
4688 4854 0.912487 TCGGAAGGCACCCTTACCAT 60.912 55.000 0.75 0.0 44.82 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1178 1229 0.178992 TTCCAAGGAAGCACCACAGG 60.179 55.0 0.0 1.97 42.04 4.00 R
1563 1627 0.249155 CACCATGCCATGCGGAAATC 60.249 55.0 0.0 0.00 0.00 2.17 R
2136 2253 1.452110 CACCGATCATGCCAAGTTCA 58.548 50.0 0.0 0.00 0.00 3.18 R
3662 3814 1.717032 ACTCAGGACAGGTGCAAGTA 58.283 50.0 0.0 0.00 0.00 2.24 R
4067 4222 2.879103 TAGAGCTTTGGGGGAAGTTG 57.121 50.0 0.0 0.00 0.00 3.16 R
5032 5198 0.807496 GCCAGCCTTTGCAAGACTAG 59.193 55.0 0.0 0.00 41.13 2.57 R
6523 6823 0.037605 GTGGTAGTTCTGTGGGACGG 60.038 60.0 0.0 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.602340 ATGTCCGACAGTAGTTTGACTT 57.398 40.909 7.41 0.00 32.77 3.01
22 23 4.395959 TGTCCGACAGTAGTTTGACTTT 57.604 40.909 0.00 0.00 32.77 2.66
23 24 4.761975 TGTCCGACAGTAGTTTGACTTTT 58.238 39.130 0.00 0.00 32.77 2.27
24 25 4.569162 TGTCCGACAGTAGTTTGACTTTTG 59.431 41.667 0.00 0.00 32.77 2.44
25 26 4.807304 GTCCGACAGTAGTTTGACTTTTGA 59.193 41.667 0.00 0.00 0.00 2.69
26 27 5.292589 GTCCGACAGTAGTTTGACTTTTGAA 59.707 40.000 0.00 0.00 0.00 2.69
27 28 5.522460 TCCGACAGTAGTTTGACTTTTGAAG 59.478 40.000 0.00 0.00 0.00 3.02
28 29 5.277345 CCGACAGTAGTTTGACTTTTGAAGG 60.277 44.000 0.00 0.00 0.00 3.46
29 30 5.522460 CGACAGTAGTTTGACTTTTGAAGGA 59.478 40.000 0.00 0.00 0.00 3.36
30 31 6.292381 CGACAGTAGTTTGACTTTTGAAGGAG 60.292 42.308 0.00 0.00 0.00 3.69
31 32 5.297029 ACAGTAGTTTGACTTTTGAAGGAGC 59.703 40.000 0.00 0.00 0.00 4.70
32 33 5.296780 CAGTAGTTTGACTTTTGAAGGAGCA 59.703 40.000 0.00 0.00 0.00 4.26
33 34 4.639135 AGTTTGACTTTTGAAGGAGCAC 57.361 40.909 0.00 0.00 0.00 4.40
34 35 3.065371 AGTTTGACTTTTGAAGGAGCACG 59.935 43.478 0.00 0.00 0.00 5.34
35 36 2.613026 TGACTTTTGAAGGAGCACGA 57.387 45.000 0.00 0.00 0.00 4.35
36 37 2.210116 TGACTTTTGAAGGAGCACGAC 58.790 47.619 0.00 0.00 0.00 4.34
37 38 1.531578 GACTTTTGAAGGAGCACGACC 59.468 52.381 0.00 0.00 0.00 4.79
38 39 0.512952 CTTTTGAAGGAGCACGACCG 59.487 55.000 0.00 0.00 0.00 4.79
39 40 0.105224 TTTTGAAGGAGCACGACCGA 59.895 50.000 0.00 0.00 0.00 4.69
40 41 0.599204 TTTGAAGGAGCACGACCGAC 60.599 55.000 0.00 0.00 0.00 4.79
41 42 1.461091 TTGAAGGAGCACGACCGACT 61.461 55.000 0.00 0.00 0.00 4.18
42 43 1.153997 GAAGGAGCACGACCGACTC 60.154 63.158 0.00 2.85 0.00 3.36
45 46 2.179517 GAGCACGACCGACTCCAG 59.820 66.667 0.00 0.00 0.00 3.86
46 47 2.282251 AGCACGACCGACTCCAGA 60.282 61.111 0.00 0.00 0.00 3.86
47 48 1.658686 GAGCACGACCGACTCCAGAT 61.659 60.000 0.00 0.00 0.00 2.90
48 49 1.226717 GCACGACCGACTCCAGATC 60.227 63.158 0.00 0.00 0.00 2.75
49 50 1.934220 GCACGACCGACTCCAGATCA 61.934 60.000 0.00 0.00 0.00 2.92
50 51 0.526211 CACGACCGACTCCAGATCAA 59.474 55.000 0.00 0.00 0.00 2.57
51 52 1.135139 CACGACCGACTCCAGATCAAT 59.865 52.381 0.00 0.00 0.00 2.57
52 53 1.825474 ACGACCGACTCCAGATCAATT 59.175 47.619 0.00 0.00 0.00 2.32
53 54 2.233922 ACGACCGACTCCAGATCAATTT 59.766 45.455 0.00 0.00 0.00 1.82
54 55 2.604914 CGACCGACTCCAGATCAATTTG 59.395 50.000 0.00 0.00 0.00 2.32
55 56 3.676049 CGACCGACTCCAGATCAATTTGA 60.676 47.826 0.75 0.75 0.00 2.69
56 57 4.253685 GACCGACTCCAGATCAATTTGAA 58.746 43.478 2.68 0.00 0.00 2.69
57 58 4.651778 ACCGACTCCAGATCAATTTGAAA 58.348 39.130 2.68 0.00 0.00 2.69
58 59 4.697352 ACCGACTCCAGATCAATTTGAAAG 59.303 41.667 2.68 0.00 0.00 2.62
59 60 4.697352 CCGACTCCAGATCAATTTGAAAGT 59.303 41.667 2.68 2.96 0.00 2.66
60 61 5.163814 CCGACTCCAGATCAATTTGAAAGTC 60.164 44.000 2.68 10.01 0.00 3.01
61 62 5.409520 CGACTCCAGATCAATTTGAAAGTCA 59.590 40.000 18.61 0.00 31.78 3.41
62 63 6.073058 CGACTCCAGATCAATTTGAAAGTCAA 60.073 38.462 18.61 0.00 34.03 3.18
71 72 3.536158 TTTGAAAGTCAAATCCGCGAG 57.464 42.857 8.23 0.00 41.02 5.03
72 73 0.796312 TGAAAGTCAAATCCGCGAGC 59.204 50.000 8.23 0.00 0.00 5.03
73 74 0.097150 GAAAGTCAAATCCGCGAGCC 59.903 55.000 8.23 0.00 0.00 4.70
74 75 1.635663 AAAGTCAAATCCGCGAGCCG 61.636 55.000 8.23 0.00 0.00 5.52
75 76 2.501223 AAGTCAAATCCGCGAGCCGA 62.501 55.000 8.23 0.00 40.02 5.54
76 77 2.098233 GTCAAATCCGCGAGCCGAA 61.098 57.895 8.23 0.00 40.02 4.30
77 78 1.153449 TCAAATCCGCGAGCCGAAT 60.153 52.632 8.23 0.00 40.02 3.34
78 79 0.103390 TCAAATCCGCGAGCCGAATA 59.897 50.000 8.23 0.00 40.02 1.75
79 80 0.232303 CAAATCCGCGAGCCGAATAC 59.768 55.000 8.23 0.00 40.02 1.89
80 81 0.104304 AAATCCGCGAGCCGAATACT 59.896 50.000 8.23 0.00 40.02 2.12
81 82 0.956633 AATCCGCGAGCCGAATACTA 59.043 50.000 8.23 0.00 40.02 1.82
82 83 0.522180 ATCCGCGAGCCGAATACTAG 59.478 55.000 8.23 0.00 40.02 2.57
83 84 0.816825 TCCGCGAGCCGAATACTAGT 60.817 55.000 8.23 0.00 40.02 2.57
84 85 0.870393 CCGCGAGCCGAATACTAGTA 59.130 55.000 8.23 4.77 40.02 1.82
85 86 1.136029 CCGCGAGCCGAATACTAGTAG 60.136 57.143 8.23 0.00 40.02 2.57
86 87 1.530293 CGCGAGCCGAATACTAGTAGT 59.470 52.381 0.00 8.14 40.02 2.73
87 88 2.733552 CGCGAGCCGAATACTAGTAGTA 59.266 50.000 12.38 12.38 40.02 1.82
88 89 3.181532 CGCGAGCCGAATACTAGTAGTAG 60.182 52.174 15.08 6.13 40.02 2.57
89 90 3.745458 GCGAGCCGAATACTAGTAGTAGT 59.255 47.826 15.08 14.57 42.49 2.73
90 91 4.926238 GCGAGCCGAATACTAGTAGTAGTA 59.074 45.833 17.75 17.75 44.26 1.82
91 92 5.164002 GCGAGCCGAATACTAGTAGTAGTAC 60.164 48.000 17.79 7.29 43.19 2.73
92 93 6.155827 CGAGCCGAATACTAGTAGTAGTACT 58.844 44.000 17.79 14.57 43.19 2.73
93 94 7.309177 CGAGCCGAATACTAGTAGTAGTACTA 58.691 42.308 17.79 15.22 43.19 1.82
94 95 7.973388 CGAGCCGAATACTAGTAGTAGTACTAT 59.027 40.741 17.79 8.84 43.19 2.12
95 96 9.651913 GAGCCGAATACTAGTAGTAGTACTATT 57.348 37.037 17.79 13.52 43.19 1.73
133 134 8.890124 TTTGCTAGTACTTGTATAAACACACA 57.110 30.769 0.00 0.00 34.61 3.72
134 135 7.878477 TGCTAGTACTTGTATAAACACACAC 57.122 36.000 0.00 0.00 34.61 3.82
135 136 7.435305 TGCTAGTACTTGTATAAACACACACA 58.565 34.615 0.00 0.00 34.61 3.72
136 137 7.383029 TGCTAGTACTTGTATAAACACACACAC 59.617 37.037 0.00 0.00 34.61 3.82
137 138 7.383029 GCTAGTACTTGTATAAACACACACACA 59.617 37.037 0.00 0.00 34.61 3.72
138 139 7.473027 AGTACTTGTATAAACACACACACAC 57.527 36.000 0.00 0.00 34.61 3.82
139 140 7.042950 AGTACTTGTATAAACACACACACACA 58.957 34.615 0.00 0.00 34.61 3.72
140 141 6.114221 ACTTGTATAAACACACACACACAC 57.886 37.500 0.00 0.00 34.61 3.82
141 142 5.644206 ACTTGTATAAACACACACACACACA 59.356 36.000 0.00 0.00 34.61 3.72
142 143 5.472320 TGTATAAACACACACACACACAC 57.528 39.130 0.00 0.00 0.00 3.82
143 144 4.935808 TGTATAAACACACACACACACACA 59.064 37.500 0.00 0.00 0.00 3.72
144 145 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
145 146 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
146 147 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
147 148 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
148 149 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
149 150 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
150 151 0.319986 ACACACACACACACACACGA 60.320 50.000 0.00 0.00 0.00 4.35
151 152 0.094558 CACACACACACACACACGAC 59.905 55.000 0.00 0.00 0.00 4.34
152 153 0.319986 ACACACACACACACACGACA 60.320 50.000 0.00 0.00 0.00 4.35
153 154 1.006086 CACACACACACACACGACAT 58.994 50.000 0.00 0.00 0.00 3.06
154 155 1.005032 CACACACACACACACGACATC 60.005 52.381 0.00 0.00 0.00 3.06
155 156 0.229500 CACACACACACACGACATCG 59.771 55.000 0.00 0.00 46.33 3.84
156 157 0.101579 ACACACACACACGACATCGA 59.898 50.000 8.54 0.00 43.02 3.59
157 158 1.269569 ACACACACACACGACATCGAT 60.270 47.619 8.54 0.00 43.02 3.59
158 159 1.386748 CACACACACACGACATCGATC 59.613 52.381 8.54 0.00 43.02 3.69
159 160 0.992072 CACACACACGACATCGATCC 59.008 55.000 8.54 0.00 43.02 3.36
160 161 0.888619 ACACACACGACATCGATCCT 59.111 50.000 8.54 0.00 43.02 3.24
161 162 1.271876 CACACACGACATCGATCCTG 58.728 55.000 8.54 0.00 43.02 3.86
162 163 0.888619 ACACACGACATCGATCCTGT 59.111 50.000 8.54 0.00 43.02 4.00
163 164 1.272490 ACACACGACATCGATCCTGTT 59.728 47.619 8.54 0.00 43.02 3.16
164 165 2.288825 ACACACGACATCGATCCTGTTT 60.289 45.455 8.54 0.00 43.02 2.83
165 166 2.092681 CACACGACATCGATCCTGTTTG 59.907 50.000 8.54 0.00 43.02 2.93
166 167 1.061131 CACGACATCGATCCTGTTTGC 59.939 52.381 8.54 0.00 43.02 3.68
167 168 0.652592 CGACATCGATCCTGTTTGCC 59.347 55.000 0.00 0.00 43.02 4.52
168 169 0.652592 GACATCGATCCTGTTTGCCG 59.347 55.000 0.00 0.00 0.00 5.69
169 170 0.036388 ACATCGATCCTGTTTGCCGT 60.036 50.000 0.00 0.00 0.00 5.68
170 171 1.086696 CATCGATCCTGTTTGCCGTT 58.913 50.000 0.00 0.00 0.00 4.44
171 172 1.086696 ATCGATCCTGTTTGCCGTTG 58.913 50.000 0.00 0.00 0.00 4.10
172 173 1.154225 CGATCCTGTTTGCCGTTGC 60.154 57.895 0.00 0.00 38.26 4.17
184 185 2.593436 CGTTGCACCCCGGACTTT 60.593 61.111 0.73 0.00 0.00 2.66
185 186 2.190841 CGTTGCACCCCGGACTTTT 61.191 57.895 0.73 0.00 0.00 2.27
186 187 1.730451 CGTTGCACCCCGGACTTTTT 61.730 55.000 0.73 0.00 0.00 1.94
204 205 4.857509 TTTTTAGCCCGCATACAAGTTT 57.142 36.364 0.00 0.00 0.00 2.66
205 206 4.857509 TTTTAGCCCGCATACAAGTTTT 57.142 36.364 0.00 0.00 0.00 2.43
206 207 3.840890 TTAGCCCGCATACAAGTTTTG 57.159 42.857 0.00 0.00 0.00 2.44
207 208 0.243636 AGCCCGCATACAAGTTTTGC 59.756 50.000 0.00 0.00 0.00 3.68
208 209 0.735978 GCCCGCATACAAGTTTTGCC 60.736 55.000 0.00 0.00 32.76 4.52
209 210 0.455972 CCCGCATACAAGTTTTGCCG 60.456 55.000 0.00 0.00 32.76 5.69
210 211 0.455972 CCGCATACAAGTTTTGCCGG 60.456 55.000 0.00 0.00 32.76 6.13
211 212 0.519519 CGCATACAAGTTTTGCCGGA 59.480 50.000 5.05 0.00 32.76 5.14
212 213 1.465689 CGCATACAAGTTTTGCCGGAG 60.466 52.381 5.05 0.00 32.76 4.63
230 231 5.682943 CGGAGGTCAAAGTATTGTGAAAA 57.317 39.130 0.00 0.00 37.79 2.29
231 232 6.067263 CGGAGGTCAAAGTATTGTGAAAAA 57.933 37.500 0.00 0.00 37.79 1.94
287 288 7.364522 TGTTAGACTCATTGTGAAATGTAGC 57.635 36.000 0.00 0.00 0.00 3.58
288 289 7.161404 TGTTAGACTCATTGTGAAATGTAGCT 58.839 34.615 0.00 0.00 0.00 3.32
289 290 7.661437 TGTTAGACTCATTGTGAAATGTAGCTT 59.339 33.333 0.00 0.00 0.00 3.74
290 291 8.507249 GTTAGACTCATTGTGAAATGTAGCTTT 58.493 33.333 0.00 0.00 0.00 3.51
291 292 9.719355 TTAGACTCATTGTGAAATGTAGCTTTA 57.281 29.630 0.00 0.00 0.00 1.85
292 293 8.798859 AGACTCATTGTGAAATGTAGCTTTAT 57.201 30.769 0.00 0.00 0.00 1.40
293 294 8.671921 AGACTCATTGTGAAATGTAGCTTTATG 58.328 33.333 0.00 0.00 0.00 1.90
294 295 7.765307 ACTCATTGTGAAATGTAGCTTTATGG 58.235 34.615 0.00 0.00 0.00 2.74
295 296 7.394359 ACTCATTGTGAAATGTAGCTTTATGGT 59.606 33.333 0.00 0.00 0.00 3.55
296 297 8.800370 TCATTGTGAAATGTAGCTTTATGGTA 57.200 30.769 0.00 0.00 0.00 3.25
297 298 9.407380 TCATTGTGAAATGTAGCTTTATGGTAT 57.593 29.630 0.00 0.00 0.00 2.73
381 382 9.836864 ACTTATTGTAGATTTGACATATGCAGA 57.163 29.630 1.58 0.00 0.00 4.26
383 384 9.836864 TTATTGTAGATTTGACATATGCAGAGT 57.163 29.630 1.58 0.00 0.00 3.24
385 386 9.836864 ATTGTAGATTTGACATATGCAGAGTAA 57.163 29.630 1.58 0.00 0.00 2.24
386 387 9.665719 TTGTAGATTTGACATATGCAGAGTAAA 57.334 29.630 1.58 0.00 0.00 2.01
387 388 9.665719 TGTAGATTTGACATATGCAGAGTAAAA 57.334 29.630 1.58 0.00 0.00 1.52
497 502 3.597728 GGGCCCAAACGCGAAACA 61.598 61.111 19.95 0.00 0.00 2.83
511 516 1.792118 GAAACAGGCCCGGAACACAC 61.792 60.000 0.73 0.00 0.00 3.82
521 528 3.150767 CCCGGAACACACCAAAGATAAA 58.849 45.455 0.73 0.00 0.00 1.40
523 530 3.190535 CCGGAACACACCAAAGATAAAGG 59.809 47.826 0.00 0.00 0.00 3.11
543 550 2.352715 GGAAAAAGGAGCCACCGAATTG 60.353 50.000 0.00 0.00 44.74 2.32
613 632 1.202582 CACCATCGTCGTCTCTTTCCT 59.797 52.381 0.00 0.00 0.00 3.36
617 636 2.180432 TCGTCGTCTCTTTCCTCTCA 57.820 50.000 0.00 0.00 0.00 3.27
637 656 3.076785 TCATCCCTCCCTCCTCTCTATTC 59.923 52.174 0.00 0.00 0.00 1.75
663 682 2.115266 CCCTTCACCACCACCACC 59.885 66.667 0.00 0.00 0.00 4.61
664 683 2.762554 CCCTTCACCACCACCACCA 61.763 63.158 0.00 0.00 0.00 4.17
665 684 1.528309 CCTTCACCACCACCACCAC 60.528 63.158 0.00 0.00 0.00 4.16
666 685 1.531748 CTTCACCACCACCACCACT 59.468 57.895 0.00 0.00 0.00 4.00
667 686 0.535102 CTTCACCACCACCACCACTC 60.535 60.000 0.00 0.00 0.00 3.51
668 687 1.990160 TTCACCACCACCACCACTCC 61.990 60.000 0.00 0.00 0.00 3.85
669 688 3.175710 ACCACCACCACCACTCCC 61.176 66.667 0.00 0.00 0.00 4.30
670 689 3.966543 CCACCACCACCACTCCCC 61.967 72.222 0.00 0.00 0.00 4.81
671 690 3.174987 CACCACCACCACTCCCCA 61.175 66.667 0.00 0.00 0.00 4.96
690 709 3.182263 CCCACCCACTTCCCACCA 61.182 66.667 0.00 0.00 0.00 4.17
723 761 2.852075 ACGCCACTTCCCCAGGAA 60.852 61.111 0.00 0.00 39.66 3.36
1072 1121 0.621862 ATTCCCTCCCTCTCGCCTTT 60.622 55.000 0.00 0.00 0.00 3.11
1285 1337 0.318869 TTTTTCGCCGCTGTCTCGTA 60.319 50.000 0.00 0.00 0.00 3.43
1359 1411 3.497942 GGTGGTGACCTGTTCAATACCTT 60.498 47.826 2.11 0.00 38.55 3.50
1362 1414 4.142038 GGTGACCTGTTCAATACCTTGTT 58.858 43.478 0.00 0.00 35.39 2.83
1363 1415 4.023193 GGTGACCTGTTCAATACCTTGTTG 60.023 45.833 0.00 0.00 35.39 3.33
1471 1523 1.271102 GTTGGATTTTTGTGGGCGCTA 59.729 47.619 7.64 0.00 0.00 4.26
1479 1531 4.857509 TTTTGTGGGCGCTATAAACTTT 57.142 36.364 7.64 0.00 0.00 2.66
1484 1536 4.760715 TGTGGGCGCTATAAACTTTTTACA 59.239 37.500 7.64 0.00 0.00 2.41
1485 1537 5.416326 TGTGGGCGCTATAAACTTTTTACAT 59.584 36.000 7.64 0.00 0.00 2.29
1487 1539 5.066764 TGGGCGCTATAAACTTTTTACATCC 59.933 40.000 7.64 0.00 0.00 3.51
1490 1542 6.127403 GCGCTATAAACTTTTTACATCCTCG 58.873 40.000 0.00 0.00 0.00 4.63
1492 1544 7.117454 CGCTATAAACTTTTTACATCCTCGTG 58.883 38.462 0.00 0.00 0.00 4.35
1493 1545 7.201496 CGCTATAAACTTTTTACATCCTCGTGT 60.201 37.037 0.00 0.00 36.13 4.49
1494 1546 8.114905 GCTATAAACTTTTTACATCCTCGTGTC 58.885 37.037 0.00 0.00 33.62 3.67
1495 1547 9.367444 CTATAAACTTTTTACATCCTCGTGTCT 57.633 33.333 0.00 0.00 33.62 3.41
1496 1548 5.924475 AACTTTTTACATCCTCGTGTCTG 57.076 39.130 0.00 0.00 33.62 3.51
1498 1550 5.794894 ACTTTTTACATCCTCGTGTCTGAT 58.205 37.500 0.00 0.00 33.62 2.90
1500 1552 6.147821 ACTTTTTACATCCTCGTGTCTGATTG 59.852 38.462 0.00 0.00 33.62 2.67
1501 1553 2.015736 ACATCCTCGTGTCTGATTGC 57.984 50.000 0.00 0.00 0.00 3.56
1502 1554 1.276138 ACATCCTCGTGTCTGATTGCA 59.724 47.619 0.00 0.00 0.00 4.08
1503 1555 2.289631 ACATCCTCGTGTCTGATTGCAA 60.290 45.455 0.00 0.00 0.00 4.08
1506 1558 1.150827 CTCGTGTCTGATTGCAAGCA 58.849 50.000 17.67 17.67 0.00 3.91
1507 1559 1.128136 CTCGTGTCTGATTGCAAGCAG 59.872 52.381 33.46 33.46 43.47 4.24
1508 1560 0.870393 CGTGTCTGATTGCAAGCAGT 59.130 50.000 35.97 7.32 42.72 4.40
1524 1588 4.891992 AGCAGTTTGTTAGGCTAGAAGA 57.108 40.909 0.00 0.00 34.25 2.87
1529 1593 6.634805 CAGTTTGTTAGGCTAGAAGAGATGA 58.365 40.000 0.00 0.00 0.00 2.92
1551 1615 3.810310 ATCCTTTTGCTACGAGGAGAG 57.190 47.619 0.00 0.00 42.47 3.20
1552 1616 1.825474 TCCTTTTGCTACGAGGAGAGG 59.175 52.381 0.00 0.00 34.74 3.69
1553 1617 1.134670 CCTTTTGCTACGAGGAGAGGG 60.135 57.143 0.00 0.00 32.11 4.30
1554 1618 1.550976 CTTTTGCTACGAGGAGAGGGT 59.449 52.381 0.00 0.00 0.00 4.34
1555 1619 1.640917 TTTGCTACGAGGAGAGGGTT 58.359 50.000 0.00 0.00 0.00 4.11
1556 1620 1.183549 TTGCTACGAGGAGAGGGTTC 58.816 55.000 0.00 0.00 0.00 3.62
1557 1621 0.683504 TGCTACGAGGAGAGGGTTCC 60.684 60.000 0.00 0.00 37.52 3.62
1562 1626 3.813150 AGGAGAGGGTTCCTGTGC 58.187 61.111 0.00 0.00 45.84 4.57
1563 1627 2.266055 GGAGAGGGTTCCTGTGCG 59.734 66.667 0.00 0.00 31.76 5.34
1564 1628 2.283529 GGAGAGGGTTCCTGTGCGA 61.284 63.158 0.00 0.00 31.76 5.10
1565 1629 1.617947 GGAGAGGGTTCCTGTGCGAT 61.618 60.000 0.00 0.00 31.76 4.58
1566 1630 0.250513 GAGAGGGTTCCTGTGCGATT 59.749 55.000 0.00 0.00 31.76 3.34
1567 1631 0.693049 AGAGGGTTCCTGTGCGATTT 59.307 50.000 0.00 0.00 31.76 2.17
1568 1632 1.087501 GAGGGTTCCTGTGCGATTTC 58.912 55.000 0.00 0.00 31.76 2.17
1569 1633 0.322546 AGGGTTCCTGTGCGATTTCC 60.323 55.000 0.00 0.00 29.57 3.13
1570 1634 1.644786 GGGTTCCTGTGCGATTTCCG 61.645 60.000 0.00 0.00 42.21 4.30
1579 1643 4.620437 CGATTTCCGCATGGCATG 57.380 55.556 22.99 22.99 34.14 4.06
1580 1644 1.008194 CGATTTCCGCATGGCATGG 60.008 57.895 27.48 17.26 34.14 3.66
1581 1645 1.727511 CGATTTCCGCATGGCATGGT 61.728 55.000 27.48 3.47 34.14 3.55
1606 1670 3.181434 TGCCTTGACCTGTCACCTAATTT 60.181 43.478 0.00 0.00 39.66 1.82
1621 1685 8.877864 TCACCTAATTTGTGACCAATAATCTT 57.122 30.769 6.44 0.00 37.80 2.40
1680 1744 5.067153 GCACATGCCAATGTAGTTTGGTATA 59.933 40.000 6.50 0.00 46.40 1.47
1681 1745 6.239008 GCACATGCCAATGTAGTTTGGTATAT 60.239 38.462 6.50 0.00 46.40 0.86
1682 1746 7.362662 CACATGCCAATGTAGTTTGGTATATC 58.637 38.462 6.50 0.00 46.40 1.63
1683 1747 7.013178 CACATGCCAATGTAGTTTGGTATATCA 59.987 37.037 6.50 0.00 46.40 2.15
1684 1748 7.559533 ACATGCCAATGTAGTTTGGTATATCAA 59.440 33.333 6.50 0.00 46.40 2.57
1792 1856 9.513906 TCTCAAAATATCACACCATCAAGTTAA 57.486 29.630 0.00 0.00 0.00 2.01
1831 1895 5.484173 TGATTCCGTTCATTTGATGCTAC 57.516 39.130 0.00 0.00 0.00 3.58
1891 1955 6.823689 CCTCTGGTGTTTATGCTAATTGTAGT 59.176 38.462 0.00 0.00 0.00 2.73
1904 1968 9.836864 ATGCTAATTGTAGTTGTTATCATCTGA 57.163 29.630 0.00 0.00 0.00 3.27
1989 2094 8.542132 CAAAACTTGTCATGACATTAACCTTTG 58.458 33.333 28.32 22.98 41.52 2.77
1997 2102 8.234546 GTCATGACATTAACCTTTGTCGTTTAT 58.765 33.333 21.07 0.00 44.11 1.40
2022 2127 4.563140 TTCTAATGTTTAGGACGGGCTT 57.437 40.909 0.00 0.00 0.00 4.35
2100 2217 0.038251 TACTGTCTGCCAAGCACTCG 60.038 55.000 0.00 0.00 33.79 4.18
2136 2253 8.505625 CAAAGTAAATTAATGCTGCAATTTGGT 58.494 29.630 16.87 5.26 35.64 3.67
2150 2267 4.571919 CAATTTGGTGAACTTGGCATGAT 58.428 39.130 7.45 0.00 0.00 2.45
2378 2495 1.174783 GCAGTCGGGTTCTCTCTGTA 58.825 55.000 0.00 0.00 0.00 2.74
2453 2570 1.062587 CAGGCGCTAATTTTGGACGAG 59.937 52.381 7.64 0.00 0.00 4.18
2505 2622 6.897413 TCATATGCTGCTGAGGTATAATCCTA 59.103 38.462 0.00 0.00 38.02 2.94
2604 2740 7.646130 TGTTTTGTGTTTAGATTCTTAAAGGCG 59.354 33.333 0.00 0.00 0.00 5.52
2702 2838 2.409948 ATTGTTGAGGTCAGCTAGCC 57.590 50.000 12.13 0.00 0.00 3.93
3114 3258 5.419471 CCTGGTAACTAGCTAGTTCTGACTT 59.581 44.000 36.17 17.88 44.77 3.01
3124 3268 1.771255 AGTTCTGACTTGGTTCCTGCT 59.229 47.619 0.00 0.00 29.87 4.24
3234 3378 2.026262 TGGATTTCCACCCTACTCTTGC 60.026 50.000 0.00 0.00 42.01 4.01
3662 3814 2.380064 TGCCAGAATTTCTTGGTGGT 57.620 45.000 13.14 0.00 0.00 4.16
3680 3832 1.338200 GGTACTTGCACCTGTCCTGAG 60.338 57.143 0.00 0.00 35.55 3.35
4067 4222 1.224965 GGATCTGAAGCGGAAGATGC 58.775 55.000 3.24 2.79 34.68 3.91
4174 4329 7.554118 ACATTGTGCTAAGATGCAGTTACTTAT 59.446 33.333 0.00 0.00 44.20 1.73
4233 4388 5.171339 ACAATTGTCAATCAGCCTACTCT 57.829 39.130 4.92 0.00 0.00 3.24
4234 4389 5.181748 ACAATTGTCAATCAGCCTACTCTC 58.818 41.667 4.92 0.00 0.00 3.20
4235 4390 5.181009 CAATTGTCAATCAGCCTACTCTCA 58.819 41.667 0.00 0.00 0.00 3.27
4291 4449 1.506262 CAAACCACCAGTATGCGGC 59.494 57.895 0.00 0.00 30.95 6.53
4341 4501 8.795786 TGACTACATTTCATAGCAAACAAAAC 57.204 30.769 0.00 0.00 0.00 2.43
4356 4516 4.486125 ACAAAACAATTGGAACTGCCTT 57.514 36.364 10.83 0.00 37.63 4.35
4374 4534 3.057245 GCCTTTCTCCATCAAACAACCTC 60.057 47.826 0.00 0.00 0.00 3.85
4375 4535 4.144297 CCTTTCTCCATCAAACAACCTCA 58.856 43.478 0.00 0.00 0.00 3.86
4517 4683 4.402474 ACCCCTTTTCTTGTTTCTCTGTTG 59.598 41.667 0.00 0.00 0.00 3.33
4518 4684 4.202151 CCCCTTTTCTTGTTTCTCTGTTGG 60.202 45.833 0.00 0.00 0.00 3.77
4619 4785 6.192044 TCTACCCGTATGCCTGAATATGATA 58.808 40.000 0.00 0.00 0.00 2.15
4684 4850 3.721868 CCTCGGAAGGCACCCTTA 58.278 61.111 0.00 0.00 44.82 2.69
4687 4853 1.536907 TCGGAAGGCACCCTTACCA 60.537 57.895 0.75 0.00 44.82 3.25
4688 4854 0.912487 TCGGAAGGCACCCTTACCAT 60.912 55.000 0.75 0.00 44.82 3.55
4697 4863 2.821625 GCACCCTTACCATCCAAAGGTT 60.822 50.000 0.00 0.00 40.64 3.50
4699 4865 3.258123 CACCCTTACCATCCAAAGGTTTG 59.742 47.826 0.00 0.00 40.64 2.93
4701 4867 3.901222 CCCTTACCATCCAAAGGTTTGTT 59.099 43.478 1.94 0.00 40.64 2.83
4702 4868 4.021456 CCCTTACCATCCAAAGGTTTGTTC 60.021 45.833 1.94 0.00 40.64 3.18
4709 4875 4.981806 TCCAAAGGTTTGTTCTTGTCAG 57.018 40.909 1.94 0.00 36.45 3.51
4712 4878 5.102313 CCAAAGGTTTGTTCTTGTCAGTTC 58.898 41.667 1.94 0.00 36.45 3.01
4714 4880 5.975693 AAGGTTTGTTCTTGTCAGTTCAA 57.024 34.783 0.00 0.00 0.00 2.69
4716 4882 6.530019 AGGTTTGTTCTTGTCAGTTCAATT 57.470 33.333 0.00 0.00 0.00 2.32
4717 4883 6.332630 AGGTTTGTTCTTGTCAGTTCAATTG 58.667 36.000 0.00 0.00 0.00 2.32
4718 4884 5.005682 GGTTTGTTCTTGTCAGTTCAATTGC 59.994 40.000 0.00 0.00 0.00 3.56
4719 4885 4.979943 TGTTCTTGTCAGTTCAATTGCA 57.020 36.364 0.00 0.00 0.00 4.08
4721 4887 4.202040 TGTTCTTGTCAGTTCAATTGCAGG 60.202 41.667 0.00 0.00 0.00 4.85
4722 4888 2.886523 TCTTGTCAGTTCAATTGCAGGG 59.113 45.455 0.00 0.00 0.00 4.45
4729 4895 3.318839 CAGTTCAATTGCAGGGTCTGAAA 59.681 43.478 0.00 0.00 33.07 2.69
4763 4929 6.686630 TGTTACTGCCAAAACCTGATATTTG 58.313 36.000 0.00 0.00 36.52 2.32
4764 4930 4.192429 ACTGCCAAAACCTGATATTTGC 57.808 40.909 0.00 0.00 35.66 3.68
4801 4967 3.192844 TGTAGACTCTTCTTTGGCTACCG 59.807 47.826 0.00 0.00 32.75 4.02
5032 5198 2.266554 CTGAATCTGACCTGTTCTCGC 58.733 52.381 0.00 0.00 0.00 5.03
5194 5360 5.405935 AACAAAGAAGGTAATTCCATGGC 57.594 39.130 6.96 0.00 38.84 4.40
5202 5368 2.497273 GGTAATTCCATGGCTTGCACTT 59.503 45.455 6.96 0.00 35.97 3.16
5204 5370 1.927487 ATTCCATGGCTTGCACTTCA 58.073 45.000 6.96 0.00 0.00 3.02
5205 5371 1.927487 TTCCATGGCTTGCACTTCAT 58.073 45.000 6.96 0.00 0.00 2.57
5209 5375 2.739913 CCATGGCTTGCACTTCATTTTG 59.260 45.455 0.00 0.00 0.00 2.44
5210 5376 3.555377 CCATGGCTTGCACTTCATTTTGA 60.555 43.478 0.00 0.00 0.00 2.69
5211 5377 3.815856 TGGCTTGCACTTCATTTTGAA 57.184 38.095 0.00 0.00 34.79 2.69
5251 5417 3.743521 TGCTGCTCACTGTTTCATTAGT 58.256 40.909 0.00 0.00 0.00 2.24
5287 5453 1.133792 CCCCACTCCAGAACTTGTTGT 60.134 52.381 0.00 0.00 0.00 3.32
5290 5456 3.753272 CCCACTCCAGAACTTGTTGTATG 59.247 47.826 0.00 0.00 0.00 2.39
5292 5458 4.214119 CCACTCCAGAACTTGTTGTATGTG 59.786 45.833 0.00 0.00 0.00 3.21
5331 5500 6.322969 TGAGAAGGTCAGTACTTGTCACTTAA 59.677 38.462 0.00 0.00 41.49 1.85
5355 5524 4.563976 CCTGTGCATTTTCGAAATTCATCC 59.436 41.667 12.12 0.00 0.00 3.51
5375 5544 2.202730 GCTCTGCACGAGGCTCTC 60.203 66.667 13.50 2.25 45.15 3.20
5445 5614 1.284715 GCCCAGGTTTGTAACGCAC 59.715 57.895 0.00 0.00 0.00 5.34
5455 5627 1.598882 TGTAACGCACAAGGCAATCA 58.401 45.000 0.00 0.00 45.17 2.57
5456 5628 1.535028 TGTAACGCACAAGGCAATCAG 59.465 47.619 0.00 0.00 45.17 2.90
5458 5630 0.593128 AACGCACAAGGCAATCAGTC 59.407 50.000 0.00 0.00 45.17 3.51
5460 5632 0.957395 CGCACAAGGCAATCAGTCCT 60.957 55.000 0.00 0.00 45.17 3.85
5461 5633 1.251251 GCACAAGGCAATCAGTCCTT 58.749 50.000 0.00 0.00 43.06 3.36
5463 5635 2.352127 GCACAAGGCAATCAGTCCTTTC 60.352 50.000 0.00 0.00 40.50 2.62
5464 5636 2.886523 CACAAGGCAATCAGTCCTTTCA 59.113 45.455 0.00 0.00 40.50 2.69
5466 5638 4.021719 CACAAGGCAATCAGTCCTTTCATT 60.022 41.667 0.00 0.00 40.50 2.57
5467 5639 5.183713 CACAAGGCAATCAGTCCTTTCATTA 59.816 40.000 0.00 0.00 40.50 1.90
5468 5640 5.416952 ACAAGGCAATCAGTCCTTTCATTAG 59.583 40.000 0.00 0.00 40.50 1.73
5469 5641 5.184892 AGGCAATCAGTCCTTTCATTAGT 57.815 39.130 0.00 0.00 0.00 2.24
5470 5642 4.946157 AGGCAATCAGTCCTTTCATTAGTG 59.054 41.667 0.00 0.00 0.00 2.74
5471 5643 4.439289 GGCAATCAGTCCTTTCATTAGTGC 60.439 45.833 0.00 0.00 0.00 4.40
5472 5644 4.439289 GCAATCAGTCCTTTCATTAGTGCC 60.439 45.833 0.00 0.00 0.00 5.01
5519 5691 4.532126 TCATGTGTCATGTCTACCTTCCTT 59.468 41.667 9.13 0.00 0.00 3.36
5575 5757 2.433239 ACTAGGACGAGGAGAGAGAGAC 59.567 54.545 0.00 0.00 0.00 3.36
5650 5855 5.168526 TCGTTTTCCTGACAAATGTGAAG 57.831 39.130 0.00 0.00 0.00 3.02
5652 5857 5.530915 TCGTTTTCCTGACAAATGTGAAGAT 59.469 36.000 0.00 0.00 0.00 2.40
5720 5925 1.204792 AATGTGTTTTTGCGCCGAAC 58.795 45.000 4.18 7.83 0.00 3.95
5722 5927 1.015109 TGTGTTTTTGCGCCGAACTA 58.985 45.000 4.18 0.00 0.00 2.24
5727 5932 0.958382 TTTTGCGCCGAACTATGCCT 60.958 50.000 4.18 0.00 0.00 4.75
5800 6005 1.202687 TCACCTGTCTTGGTTCTGCAG 60.203 52.381 7.63 7.63 38.45 4.41
5814 6019 4.278419 GGTTCTGCAGTTTGTTTACTCCAT 59.722 41.667 14.67 0.00 0.00 3.41
5843 6049 1.227999 ACACGCCTTTCACCATCACG 61.228 55.000 0.00 0.00 0.00 4.35
5850 6056 0.321564 TTTCACCATCACGAGCCTGG 60.322 55.000 0.00 0.00 36.09 4.45
5922 6176 3.139397 ACAGGGGAAACAAGACCATTGTA 59.861 43.478 0.00 0.00 31.50 2.41
5923 6177 4.202673 ACAGGGGAAACAAGACCATTGTAT 60.203 41.667 0.00 0.00 31.50 2.29
5924 6178 4.772100 CAGGGGAAACAAGACCATTGTATT 59.228 41.667 0.00 0.00 31.50 1.89
5925 6179 4.772100 AGGGGAAACAAGACCATTGTATTG 59.228 41.667 2.95 2.95 46.58 1.90
5950 6204 6.564709 TGCTATGGCATCATTATGTTTCTC 57.435 37.500 1.65 0.00 44.28 2.87
5951 6205 6.063404 TGCTATGGCATCATTATGTTTCTCA 58.937 36.000 1.65 0.00 44.28 3.27
5952 6206 6.546772 TGCTATGGCATCATTATGTTTCTCAA 59.453 34.615 1.65 0.00 44.28 3.02
5953 6207 7.082602 GCTATGGCATCATTATGTTTCTCAAG 58.917 38.462 1.65 0.00 38.54 3.02
5954 6208 5.840243 TGGCATCATTATGTTTCTCAAGG 57.160 39.130 0.00 0.00 35.38 3.61
5955 6209 4.098349 TGGCATCATTATGTTTCTCAAGGC 59.902 41.667 0.00 0.00 35.38 4.35
5975 6240 0.609957 CCACAATCCTCCAGCTGCAA 60.610 55.000 8.66 0.00 0.00 4.08
6068 6333 4.609336 CGCAAAACTGAGCAGAGTCTTTAC 60.609 45.833 4.21 0.00 0.00 2.01
6241 6519 2.442236 ATCTTGTGGCCTAATGTGGG 57.558 50.000 3.32 0.00 0.00 4.61
6246 6524 1.837439 TGTGGCCTAATGTGGGAGTAG 59.163 52.381 3.32 0.00 0.00 2.57
6247 6525 1.838077 GTGGCCTAATGTGGGAGTAGT 59.162 52.381 3.32 0.00 0.00 2.73
6248 6526 3.036091 GTGGCCTAATGTGGGAGTAGTA 58.964 50.000 3.32 0.00 0.00 1.82
6263 6545 5.128991 GGGAGTAGTACTACAATTCAGCCTT 59.871 44.000 29.87 9.38 38.48 4.35
6276 6558 1.030457 CAGCCTTGGCATTCCAGATC 58.970 55.000 14.54 0.00 44.53 2.75
6302 6600 8.912658 CGTATGTGTGTATGTATGTATCCTTTC 58.087 37.037 0.00 0.00 0.00 2.62
6315 6613 5.713025 TGTATCCTTTCTGCTGCATTTTTC 58.287 37.500 1.31 0.00 0.00 2.29
6316 6614 5.477984 TGTATCCTTTCTGCTGCATTTTTCT 59.522 36.000 1.31 0.00 0.00 2.52
6348 6646 0.698818 TTCTTCCTTTGCTCCCCCTC 59.301 55.000 0.00 0.00 0.00 4.30
6501 6801 4.404507 GCTTGAGCGAGTAATTGACAAA 57.595 40.909 0.00 0.00 0.00 2.83
6502 6802 4.783242 GCTTGAGCGAGTAATTGACAAAA 58.217 39.130 0.00 0.00 0.00 2.44
6503 6803 5.212194 GCTTGAGCGAGTAATTGACAAAAA 58.788 37.500 0.00 0.00 0.00 1.94
6524 6824 6.490566 AAAACTACCACATTTCACGTATCC 57.509 37.500 0.00 0.00 0.00 2.59
6525 6825 3.777478 ACTACCACATTTCACGTATCCG 58.223 45.455 0.00 0.00 40.83 4.18
6527 6827 2.613691 ACCACATTTCACGTATCCGTC 58.386 47.619 0.00 0.00 46.28 4.79
6528 6828 1.931172 CCACATTTCACGTATCCGTCC 59.069 52.381 0.00 0.00 46.28 4.79
6529 6829 1.931172 CACATTTCACGTATCCGTCCC 59.069 52.381 0.00 0.00 46.28 4.46
6530 6830 1.551430 ACATTTCACGTATCCGTCCCA 59.449 47.619 0.00 0.00 46.28 4.37
6531 6831 1.931172 CATTTCACGTATCCGTCCCAC 59.069 52.381 0.00 0.00 46.28 4.61
6532 6832 0.967662 TTTCACGTATCCGTCCCACA 59.032 50.000 0.00 0.00 46.28 4.17
6533 6833 0.528924 TTCACGTATCCGTCCCACAG 59.471 55.000 0.00 0.00 46.28 3.66
6534 6834 0.322726 TCACGTATCCGTCCCACAGA 60.323 55.000 0.00 0.00 46.28 3.41
6535 6835 0.528924 CACGTATCCGTCCCACAGAA 59.471 55.000 0.00 0.00 46.28 3.02
6536 6836 0.529378 ACGTATCCGTCCCACAGAAC 59.471 55.000 0.00 0.00 46.28 3.01
6537 6837 0.815734 CGTATCCGTCCCACAGAACT 59.184 55.000 0.00 0.00 0.00 3.01
6538 6838 2.019249 CGTATCCGTCCCACAGAACTA 58.981 52.381 0.00 0.00 0.00 2.24
6539 6839 2.223433 CGTATCCGTCCCACAGAACTAC 60.223 54.545 0.00 0.00 0.00 2.73
6540 6840 1.192428 ATCCGTCCCACAGAACTACC 58.808 55.000 0.00 0.00 0.00 3.18
6541 6841 0.178955 TCCGTCCCACAGAACTACCA 60.179 55.000 0.00 0.00 0.00 3.25
6542 6842 0.037605 CCGTCCCACAGAACTACCAC 60.038 60.000 0.00 0.00 0.00 4.16
6543 6843 0.677288 CGTCCCACAGAACTACCACA 59.323 55.000 0.00 0.00 0.00 4.17
6544 6844 1.275291 CGTCCCACAGAACTACCACAT 59.725 52.381 0.00 0.00 0.00 3.21
6545 6845 2.289444 CGTCCCACAGAACTACCACATT 60.289 50.000 0.00 0.00 0.00 2.71
6546 6846 3.751518 GTCCCACAGAACTACCACATTT 58.248 45.455 0.00 0.00 0.00 2.32
6547 6847 4.142038 GTCCCACAGAACTACCACATTTT 58.858 43.478 0.00 0.00 0.00 1.82
6548 6848 5.310451 GTCCCACAGAACTACCACATTTTA 58.690 41.667 0.00 0.00 0.00 1.52
6549 6849 5.766174 GTCCCACAGAACTACCACATTTTAA 59.234 40.000 0.00 0.00 0.00 1.52
6550 6850 6.263617 GTCCCACAGAACTACCACATTTTAAA 59.736 38.462 0.00 0.00 0.00 1.52
6551 6851 6.834451 TCCCACAGAACTACCACATTTTAAAA 59.166 34.615 2.51 2.51 0.00 1.52
6552 6852 7.342284 TCCCACAGAACTACCACATTTTAAAAA 59.658 33.333 4.44 0.00 0.00 1.94
6553 6853 7.436970 CCCACAGAACTACCACATTTTAAAAAC 59.563 37.037 4.44 0.00 0.00 2.43
6554 6854 8.194769 CCACAGAACTACCACATTTTAAAAACT 58.805 33.333 4.44 0.00 0.00 2.66
6555 6855 9.019764 CACAGAACTACCACATTTTAAAAACTG 57.980 33.333 4.44 2.42 0.00 3.16
6556 6856 8.962679 ACAGAACTACCACATTTTAAAAACTGA 58.037 29.630 4.44 0.00 0.00 3.41
6557 6857 9.233232 CAGAACTACCACATTTTAAAAACTGAC 57.767 33.333 4.44 0.00 0.00 3.51
6558 6858 8.410912 AGAACTACCACATTTTAAAAACTGACC 58.589 33.333 4.44 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.602340 AAGTCAAACTACTGTCGGACAT 57.398 40.909 11.86 4.95 34.00 3.06
1 2 4.395959 AAAGTCAAACTACTGTCGGACA 57.604 40.909 10.88 10.88 34.00 4.02
2 3 4.807304 TCAAAAGTCAAACTACTGTCGGAC 59.193 41.667 0.00 0.00 32.66 4.79
3 4 5.013568 TCAAAAGTCAAACTACTGTCGGA 57.986 39.130 0.00 0.00 0.00 4.55
4 5 5.277345 CCTTCAAAAGTCAAACTACTGTCGG 60.277 44.000 0.00 0.00 0.00 4.79
5 6 5.522460 TCCTTCAAAAGTCAAACTACTGTCG 59.478 40.000 0.00 0.00 0.00 4.35
8 9 5.296780 TGCTCCTTCAAAAGTCAAACTACTG 59.703 40.000 0.00 0.00 0.00 2.74
9 10 5.297029 GTGCTCCTTCAAAAGTCAAACTACT 59.703 40.000 0.00 0.00 0.00 2.57
10 11 5.511571 GTGCTCCTTCAAAAGTCAAACTAC 58.488 41.667 0.00 0.00 0.00 2.73
11 12 4.272504 CGTGCTCCTTCAAAAGTCAAACTA 59.727 41.667 0.00 0.00 0.00 2.24
12 13 3.065371 CGTGCTCCTTCAAAAGTCAAACT 59.935 43.478 0.00 0.00 0.00 2.66
13 14 3.064820 TCGTGCTCCTTCAAAAGTCAAAC 59.935 43.478 0.00 0.00 0.00 2.93
14 15 3.064820 GTCGTGCTCCTTCAAAAGTCAAA 59.935 43.478 0.00 0.00 0.00 2.69
15 16 2.612212 GTCGTGCTCCTTCAAAAGTCAA 59.388 45.455 0.00 0.00 0.00 3.18
16 17 2.210116 GTCGTGCTCCTTCAAAAGTCA 58.790 47.619 0.00 0.00 0.00 3.41
17 18 1.531578 GGTCGTGCTCCTTCAAAAGTC 59.468 52.381 0.00 0.00 0.00 3.01
18 19 1.594331 GGTCGTGCTCCTTCAAAAGT 58.406 50.000 0.00 0.00 0.00 2.66
19 20 0.512952 CGGTCGTGCTCCTTCAAAAG 59.487 55.000 0.00 0.00 0.00 2.27
20 21 0.105224 TCGGTCGTGCTCCTTCAAAA 59.895 50.000 0.00 0.00 0.00 2.44
21 22 0.599204 GTCGGTCGTGCTCCTTCAAA 60.599 55.000 0.00 0.00 0.00 2.69
22 23 1.006571 GTCGGTCGTGCTCCTTCAA 60.007 57.895 0.00 0.00 0.00 2.69
23 24 1.863662 GAGTCGGTCGTGCTCCTTCA 61.864 60.000 0.00 0.00 0.00 3.02
24 25 1.153997 GAGTCGGTCGTGCTCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
25 26 2.637383 GGAGTCGGTCGTGCTCCTT 61.637 63.158 20.10 0.00 43.93 3.36
26 27 3.063084 GGAGTCGGTCGTGCTCCT 61.063 66.667 20.10 1.41 43.93 3.69
27 28 3.343788 CTGGAGTCGGTCGTGCTCC 62.344 68.421 20.36 20.36 46.61 4.70
28 29 1.658686 ATCTGGAGTCGGTCGTGCTC 61.659 60.000 8.33 8.33 0.00 4.26
29 30 1.658686 GATCTGGAGTCGGTCGTGCT 61.659 60.000 0.00 0.00 0.00 4.40
30 31 1.226717 GATCTGGAGTCGGTCGTGC 60.227 63.158 0.00 0.00 0.00 5.34
31 32 0.526211 TTGATCTGGAGTCGGTCGTG 59.474 55.000 0.00 0.00 0.00 4.35
32 33 1.475403 ATTGATCTGGAGTCGGTCGT 58.525 50.000 0.00 0.00 0.00 4.34
33 34 2.586258 AATTGATCTGGAGTCGGTCG 57.414 50.000 0.00 0.00 0.00 4.79
34 35 3.861840 TCAAATTGATCTGGAGTCGGTC 58.138 45.455 0.00 0.00 0.00 4.79
35 36 3.981071 TCAAATTGATCTGGAGTCGGT 57.019 42.857 0.00 0.00 0.00 4.69
36 37 4.697352 ACTTTCAAATTGATCTGGAGTCGG 59.303 41.667 0.00 0.00 0.00 4.79
37 38 5.409520 TGACTTTCAAATTGATCTGGAGTCG 59.590 40.000 0.00 0.00 35.09 4.18
38 39 6.808008 TGACTTTCAAATTGATCTGGAGTC 57.192 37.500 0.00 6.74 33.46 3.36
39 40 7.587037 TTTGACTTTCAAATTGATCTGGAGT 57.413 32.000 0.00 0.00 41.02 3.85
52 53 1.196808 GCTCGCGGATTTGACTTTCAA 59.803 47.619 6.13 0.00 34.03 2.69
53 54 0.796312 GCTCGCGGATTTGACTTTCA 59.204 50.000 6.13 0.00 0.00 2.69
54 55 0.097150 GGCTCGCGGATTTGACTTTC 59.903 55.000 6.13 0.00 0.00 2.62
55 56 1.635663 CGGCTCGCGGATTTGACTTT 61.636 55.000 6.13 0.00 0.00 2.66
56 57 2.100631 CGGCTCGCGGATTTGACTT 61.101 57.895 6.13 0.00 0.00 3.01
57 58 2.501223 TTCGGCTCGCGGATTTGACT 62.501 55.000 6.13 0.00 0.00 3.41
58 59 1.429148 ATTCGGCTCGCGGATTTGAC 61.429 55.000 6.13 0.00 0.00 3.18
59 60 0.103390 TATTCGGCTCGCGGATTTGA 59.897 50.000 6.13 0.00 0.00 2.69
60 61 0.232303 GTATTCGGCTCGCGGATTTG 59.768 55.000 6.13 0.00 0.00 2.32
61 62 0.104304 AGTATTCGGCTCGCGGATTT 59.896 50.000 6.13 0.00 0.00 2.17
62 63 0.956633 TAGTATTCGGCTCGCGGATT 59.043 50.000 6.13 0.00 0.00 3.01
63 64 0.522180 CTAGTATTCGGCTCGCGGAT 59.478 55.000 6.13 0.00 0.00 4.18
64 65 0.816825 ACTAGTATTCGGCTCGCGGA 60.817 55.000 6.13 0.00 0.00 5.54
65 66 0.870393 TACTAGTATTCGGCTCGCGG 59.130 55.000 6.13 0.00 0.00 6.46
66 67 1.530293 ACTACTAGTATTCGGCTCGCG 59.470 52.381 2.33 0.00 0.00 5.87
67 68 3.745458 ACTACTACTAGTATTCGGCTCGC 59.255 47.826 2.33 0.00 30.81 5.03
68 69 6.155827 AGTACTACTACTAGTATTCGGCTCG 58.844 44.000 2.33 0.00 37.70 5.03
69 70 9.651913 AATAGTACTACTACTAGTATTCGGCTC 57.348 37.037 4.31 0.00 38.59 4.70
107 108 9.496873 TGTGTGTTTATACAAGTACTAGCAAAT 57.503 29.630 0.00 0.00 35.69 2.32
108 109 8.767085 GTGTGTGTTTATACAAGTACTAGCAAA 58.233 33.333 0.00 0.00 35.69 3.68
109 110 7.927092 TGTGTGTGTTTATACAAGTACTAGCAA 59.073 33.333 0.00 0.00 35.69 3.91
110 111 7.383029 GTGTGTGTGTTTATACAAGTACTAGCA 59.617 37.037 0.00 0.00 35.69 3.49
111 112 7.383029 TGTGTGTGTGTTTATACAAGTACTAGC 59.617 37.037 0.00 0.00 35.69 3.42
112 113 8.697067 GTGTGTGTGTGTTTATACAAGTACTAG 58.303 37.037 0.00 0.00 35.69 2.57
113 114 8.196103 TGTGTGTGTGTGTTTATACAAGTACTA 58.804 33.333 0.00 0.00 35.69 1.82
114 115 7.010738 GTGTGTGTGTGTGTTTATACAAGTACT 59.989 37.037 0.00 0.00 35.69 2.73
115 116 7.121272 GTGTGTGTGTGTGTTTATACAAGTAC 58.879 38.462 0.00 0.00 35.69 2.73
116 117 6.817140 TGTGTGTGTGTGTGTTTATACAAGTA 59.183 34.615 0.00 0.00 35.69 2.24
117 118 5.644206 TGTGTGTGTGTGTGTTTATACAAGT 59.356 36.000 0.00 0.00 35.69 3.16
118 119 5.963004 GTGTGTGTGTGTGTGTTTATACAAG 59.037 40.000 0.00 0.00 35.69 3.16
119 120 5.411669 TGTGTGTGTGTGTGTGTTTATACAA 59.588 36.000 0.00 0.00 35.69 2.41
120 121 4.935808 TGTGTGTGTGTGTGTGTTTATACA 59.064 37.500 0.00 0.00 0.00 2.29
121 122 5.163844 TGTGTGTGTGTGTGTGTGTTTATAC 60.164 40.000 0.00 0.00 0.00 1.47
122 123 4.935808 TGTGTGTGTGTGTGTGTGTTTATA 59.064 37.500 0.00 0.00 0.00 0.98
123 124 3.753797 TGTGTGTGTGTGTGTGTGTTTAT 59.246 39.130 0.00 0.00 0.00 1.40
124 125 3.058846 GTGTGTGTGTGTGTGTGTGTTTA 60.059 43.478 0.00 0.00 0.00 2.01
125 126 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
126 127 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
127 128 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
128 129 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
129 130 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
130 131 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
131 132 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
132 133 0.094558 GTCGTGTGTGTGTGTGTGTG 59.905 55.000 0.00 0.00 0.00 3.82
133 134 0.319986 TGTCGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
134 135 1.005032 GATGTCGTGTGTGTGTGTGTG 60.005 52.381 0.00 0.00 0.00 3.82
135 136 1.286501 GATGTCGTGTGTGTGTGTGT 58.713 50.000 0.00 0.00 0.00 3.72
136 137 0.229500 CGATGTCGTGTGTGTGTGTG 59.771 55.000 0.00 0.00 34.11 3.82
137 138 0.101579 TCGATGTCGTGTGTGTGTGT 59.898 50.000 2.04 0.00 40.80 3.72
138 139 1.386748 GATCGATGTCGTGTGTGTGTG 59.613 52.381 0.54 0.00 40.80 3.82
139 140 1.668919 GGATCGATGTCGTGTGTGTGT 60.669 52.381 0.54 0.00 40.80 3.72
140 141 0.992072 GGATCGATGTCGTGTGTGTG 59.008 55.000 0.54 0.00 40.80 3.82
141 142 0.888619 AGGATCGATGTCGTGTGTGT 59.111 50.000 0.54 0.00 40.80 3.72
142 143 1.271876 CAGGATCGATGTCGTGTGTG 58.728 55.000 0.54 0.00 40.80 3.82
143 144 0.888619 ACAGGATCGATGTCGTGTGT 59.111 50.000 12.25 0.64 43.33 3.72
144 145 1.996292 AACAGGATCGATGTCGTGTG 58.004 50.000 13.42 0.79 43.95 3.82
145 146 2.337583 CAAACAGGATCGATGTCGTGT 58.662 47.619 0.54 5.51 45.92 4.49
146 147 1.061131 GCAAACAGGATCGATGTCGTG 59.939 52.381 0.54 4.78 40.80 4.35
147 148 1.359848 GCAAACAGGATCGATGTCGT 58.640 50.000 0.54 0.00 40.80 4.34
148 149 0.652592 GGCAAACAGGATCGATGTCG 59.347 55.000 0.54 0.00 41.45 4.35
149 150 0.652592 CGGCAAACAGGATCGATGTC 59.347 55.000 0.54 0.00 0.00 3.06
150 151 0.036388 ACGGCAAACAGGATCGATGT 60.036 50.000 0.54 0.00 0.00 3.06
151 152 1.086696 AACGGCAAACAGGATCGATG 58.913 50.000 0.54 0.00 0.00 3.84
152 153 1.086696 CAACGGCAAACAGGATCGAT 58.913 50.000 0.00 0.00 0.00 3.59
153 154 1.573829 GCAACGGCAAACAGGATCGA 61.574 55.000 0.00 0.00 40.72 3.59
154 155 1.154225 GCAACGGCAAACAGGATCG 60.154 57.895 0.00 0.00 40.72 3.69
155 156 4.868195 GCAACGGCAAACAGGATC 57.132 55.556 0.00 0.00 40.72 3.36
167 168 1.730451 AAAAAGTCCGGGGTGCAACG 61.730 55.000 0.00 0.00 38.12 4.10
168 169 2.120765 AAAAAGTCCGGGGTGCAAC 58.879 52.632 0.00 0.00 0.00 4.17
169 170 4.688770 AAAAAGTCCGGGGTGCAA 57.311 50.000 0.00 0.00 0.00 4.08
183 184 4.857509 AAACTTGTATGCGGGCTAAAAA 57.142 36.364 0.00 0.00 0.00 1.94
184 185 4.551388 CAAAACTTGTATGCGGGCTAAAA 58.449 39.130 0.00 0.00 0.00 1.52
185 186 3.612955 GCAAAACTTGTATGCGGGCTAAA 60.613 43.478 0.00 0.00 0.00 1.85
186 187 2.094957 GCAAAACTTGTATGCGGGCTAA 60.095 45.455 0.00 0.00 0.00 3.09
187 188 1.470890 GCAAAACTTGTATGCGGGCTA 59.529 47.619 0.00 0.00 0.00 3.93
188 189 0.243636 GCAAAACTTGTATGCGGGCT 59.756 50.000 0.00 0.00 0.00 5.19
189 190 0.735978 GGCAAAACTTGTATGCGGGC 60.736 55.000 5.71 0.00 40.94 6.13
190 191 0.455972 CGGCAAAACTTGTATGCGGG 60.456 55.000 9.51 1.53 40.94 6.13
191 192 0.455972 CCGGCAAAACTTGTATGCGG 60.456 55.000 0.00 10.07 40.94 5.69
192 193 0.519519 TCCGGCAAAACTTGTATGCG 59.480 50.000 0.00 0.00 40.94 4.73
193 194 1.135402 CCTCCGGCAAAACTTGTATGC 60.135 52.381 0.00 3.75 39.33 3.14
194 195 2.159382 ACCTCCGGCAAAACTTGTATG 58.841 47.619 0.00 0.00 0.00 2.39
195 196 2.224670 TGACCTCCGGCAAAACTTGTAT 60.225 45.455 0.00 0.00 0.00 2.29
196 197 1.141254 TGACCTCCGGCAAAACTTGTA 59.859 47.619 0.00 0.00 0.00 2.41
197 198 0.106918 TGACCTCCGGCAAAACTTGT 60.107 50.000 0.00 0.00 0.00 3.16
198 199 1.028905 TTGACCTCCGGCAAAACTTG 58.971 50.000 0.00 0.00 0.00 3.16
199 200 1.681264 CTTTGACCTCCGGCAAAACTT 59.319 47.619 0.00 0.00 32.00 2.66
200 201 1.318576 CTTTGACCTCCGGCAAAACT 58.681 50.000 0.00 0.00 32.00 2.66
201 202 1.029681 ACTTTGACCTCCGGCAAAAC 58.970 50.000 0.00 0.00 32.00 2.43
202 203 2.642154 TACTTTGACCTCCGGCAAAA 57.358 45.000 0.00 0.00 32.00 2.44
203 204 2.817258 CAATACTTTGACCTCCGGCAAA 59.183 45.455 0.00 0.00 34.60 3.68
204 205 2.224670 ACAATACTTTGACCTCCGGCAA 60.225 45.455 0.00 0.00 36.64 4.52
205 206 1.349688 ACAATACTTTGACCTCCGGCA 59.650 47.619 0.00 0.00 36.64 5.69
206 207 1.737793 CACAATACTTTGACCTCCGGC 59.262 52.381 0.00 0.00 36.64 6.13
207 208 3.328382 TCACAATACTTTGACCTCCGG 57.672 47.619 0.00 0.00 36.64 5.14
208 209 5.682943 TTTTCACAATACTTTGACCTCCG 57.317 39.130 0.00 0.00 36.64 4.63
261 262 8.454106 GCTACATTTCACAATGAGTCTAACAAT 58.546 33.333 1.97 0.00 42.35 2.71
262 263 7.661437 AGCTACATTTCACAATGAGTCTAACAA 59.339 33.333 1.97 0.00 42.35 2.83
263 264 7.161404 AGCTACATTTCACAATGAGTCTAACA 58.839 34.615 1.97 0.00 42.35 2.41
264 265 7.602517 AGCTACATTTCACAATGAGTCTAAC 57.397 36.000 1.97 0.00 42.35 2.34
265 266 8.621532 AAAGCTACATTTCACAATGAGTCTAA 57.378 30.769 1.97 0.00 42.35 2.10
266 267 9.890629 ATAAAGCTACATTTCACAATGAGTCTA 57.109 29.630 1.97 0.00 42.35 2.59
267 268 8.671921 CATAAAGCTACATTTCACAATGAGTCT 58.328 33.333 1.97 0.00 42.35 3.24
268 269 7.912250 CCATAAAGCTACATTTCACAATGAGTC 59.088 37.037 1.97 0.00 42.35 3.36
269 270 7.394359 ACCATAAAGCTACATTTCACAATGAGT 59.606 33.333 1.97 0.00 42.35 3.41
270 271 7.765307 ACCATAAAGCTACATTTCACAATGAG 58.235 34.615 1.97 0.00 42.35 2.90
271 272 7.701539 ACCATAAAGCTACATTTCACAATGA 57.298 32.000 1.97 0.00 42.35 2.57
355 356 9.836864 TCTGCATATGTCAAATCTACAATAAGT 57.163 29.630 4.29 0.00 0.00 2.24
357 358 9.836864 ACTCTGCATATGTCAAATCTACAATAA 57.163 29.630 4.29 0.00 0.00 1.40
359 360 9.836864 TTACTCTGCATATGTCAAATCTACAAT 57.163 29.630 4.29 0.00 0.00 2.71
360 361 9.665719 TTTACTCTGCATATGTCAAATCTACAA 57.334 29.630 4.29 0.00 0.00 2.41
361 362 9.665719 TTTTACTCTGCATATGTCAAATCTACA 57.334 29.630 4.29 0.00 0.00 2.74
364 365 9.236006 ACTTTTTACTCTGCATATGTCAAATCT 57.764 29.630 4.29 0.00 0.00 2.40
367 368 9.502091 AGTACTTTTTACTCTGCATATGTCAAA 57.498 29.630 4.29 0.00 0.00 2.69
368 369 9.151471 GAGTACTTTTTACTCTGCATATGTCAA 57.849 33.333 4.29 0.00 40.43 3.18
369 370 8.703604 GAGTACTTTTTACTCTGCATATGTCA 57.296 34.615 4.29 2.32 40.43 3.58
380 381 4.858140 GGTGCTCGAGAGTACTTTTTACTC 59.142 45.833 18.75 3.64 42.56 2.59
381 382 4.615452 CGGTGCTCGAGAGTACTTTTTACT 60.615 45.833 18.75 0.00 42.56 2.24
382 383 3.607209 CGGTGCTCGAGAGTACTTTTTAC 59.393 47.826 18.75 0.00 42.56 2.01
383 384 3.366679 CCGGTGCTCGAGAGTACTTTTTA 60.367 47.826 18.75 0.00 42.56 1.52
384 385 2.609737 CCGGTGCTCGAGAGTACTTTTT 60.610 50.000 18.75 0.00 42.56 1.94
385 386 1.067776 CCGGTGCTCGAGAGTACTTTT 60.068 52.381 18.75 0.00 42.56 2.27
386 387 0.526662 CCGGTGCTCGAGAGTACTTT 59.473 55.000 18.75 0.00 42.56 2.66
387 388 1.935327 GCCGGTGCTCGAGAGTACTT 61.935 60.000 18.75 0.00 42.56 2.24
418 419 2.427506 GGCTGATCTTTTCTCCGTTGT 58.572 47.619 0.00 0.00 0.00 3.32
468 473 3.739613 GGGCCCCTCGGGTTTGAT 61.740 66.667 12.23 0.00 46.51 2.57
497 502 2.976494 CTTTGGTGTGTTCCGGGCCT 62.976 60.000 0.84 0.00 0.00 5.19
511 516 5.245977 TGGCTCCTTTTTCCTTTATCTTTGG 59.754 40.000 0.00 0.00 0.00 3.28
521 528 0.476771 TTCGGTGGCTCCTTTTTCCT 59.523 50.000 3.83 0.00 0.00 3.36
523 530 2.926586 GCAATTCGGTGGCTCCTTTTTC 60.927 50.000 3.83 0.00 0.00 2.29
543 550 4.951963 CTCGCCGATTCCTCCCGC 62.952 72.222 0.00 0.00 0.00 6.13
613 632 0.856982 GAGAGGAGGGAGGGATGAGA 59.143 60.000 0.00 0.00 0.00 3.27
617 636 2.385417 GGAATAGAGAGGAGGGAGGGAT 59.615 54.545 0.00 0.00 0.00 3.85
637 656 3.732849 GGTGAAGGGAGCAGGGGG 61.733 72.222 0.00 0.00 0.00 5.40
666 685 4.542627 AAGTGGGTGGGGTGGGGA 62.543 66.667 0.00 0.00 0.00 4.81
667 686 3.979497 GAAGTGGGTGGGGTGGGG 61.979 72.222 0.00 0.00 0.00 4.96
668 687 3.979497 GGAAGTGGGTGGGGTGGG 61.979 72.222 0.00 0.00 0.00 4.61
669 688 3.979497 GGGAAGTGGGTGGGGTGG 61.979 72.222 0.00 0.00 0.00 4.61
670 689 3.182263 TGGGAAGTGGGTGGGGTG 61.182 66.667 0.00 0.00 0.00 4.61
671 690 3.182996 GTGGGAAGTGGGTGGGGT 61.183 66.667 0.00 0.00 0.00 4.95
704 723 4.722700 CCTGGGGAAGTGGCGTGG 62.723 72.222 0.00 0.00 0.00 4.94
786 824 3.540367 GAGAAACGCCGGGGGTGAA 62.540 63.158 23.83 0.00 36.58 3.18
787 825 4.011517 GAGAAACGCCGGGGGTGA 62.012 66.667 23.83 0.00 36.58 4.02
898 942 0.322546 GCGAAACAAGGGACAGGGAT 60.323 55.000 0.00 0.00 0.00 3.85
900 944 0.323629 TAGCGAAACAAGGGACAGGG 59.676 55.000 0.00 0.00 0.00 4.45
901 945 1.676014 CCTAGCGAAACAAGGGACAGG 60.676 57.143 0.00 0.00 0.00 4.00
902 946 1.726853 CCTAGCGAAACAAGGGACAG 58.273 55.000 0.00 0.00 0.00 3.51
903 947 3.927555 CCTAGCGAAACAAGGGACA 57.072 52.632 0.00 0.00 0.00 4.02
907 951 2.484264 CAGAAACCCTAGCGAAACAAGG 59.516 50.000 0.00 0.00 0.00 3.61
908 952 3.186613 GTCAGAAACCCTAGCGAAACAAG 59.813 47.826 0.00 0.00 0.00 3.16
1178 1229 0.178992 TTCCAAGGAAGCACCACAGG 60.179 55.000 0.00 1.97 42.04 4.00
1224 1276 3.741476 GGAAACCTGCTGCCAGCG 61.741 66.667 12.80 6.88 46.26 5.18
1234 1286 0.767060 AGTCGGAACCCAGGAAACCT 60.767 55.000 0.00 0.00 0.00 3.50
1239 1291 2.314071 TTCTAAGTCGGAACCCAGGA 57.686 50.000 0.00 0.00 0.00 3.86
1277 1329 0.892755 ACGGCTCCAAATACGAGACA 59.107 50.000 0.00 0.00 34.83 3.41
1359 1411 0.810648 GCGATGAGGCCAAATCAACA 59.189 50.000 5.01 0.00 0.00 3.33
1362 1414 0.749091 CCTGCGATGAGGCCAAATCA 60.749 55.000 5.01 0.00 0.00 2.57
1363 1415 0.749454 ACCTGCGATGAGGCCAAATC 60.749 55.000 5.01 6.56 36.46 2.17
1443 1495 4.340617 CCACAAAAATCCAACCTAGCCTA 58.659 43.478 0.00 0.00 0.00 3.93
1471 1523 7.876068 TCAGACACGAGGATGTAAAAAGTTTAT 59.124 33.333 0.00 0.00 31.24 1.40
1479 1531 3.932710 GCAATCAGACACGAGGATGTAAA 59.067 43.478 0.00 0.00 31.24 2.01
1484 1536 2.625737 CTTGCAATCAGACACGAGGAT 58.374 47.619 0.00 0.00 0.00 3.24
1485 1537 1.941209 GCTTGCAATCAGACACGAGGA 60.941 52.381 0.00 0.00 0.00 3.71
1487 1539 1.128136 CTGCTTGCAATCAGACACGAG 59.872 52.381 22.79 0.00 32.26 4.18
1490 1542 3.047796 CAAACTGCTTGCAATCAGACAC 58.952 45.455 31.21 3.63 34.57 3.67
1492 1544 3.360249 ACAAACTGCTTGCAATCAGAC 57.640 42.857 31.21 6.91 38.75 3.51
1493 1545 4.022935 CCTAACAAACTGCTTGCAATCAGA 60.023 41.667 31.21 11.18 38.75 3.27
1494 1546 4.232221 CCTAACAAACTGCTTGCAATCAG 58.768 43.478 24.84 24.84 38.75 2.90
1495 1547 3.552684 GCCTAACAAACTGCTTGCAATCA 60.553 43.478 0.00 0.00 38.75 2.57
1496 1548 2.989166 GCCTAACAAACTGCTTGCAATC 59.011 45.455 0.00 0.00 38.75 2.67
1498 1550 2.031120 AGCCTAACAAACTGCTTGCAA 58.969 42.857 0.00 0.00 38.75 4.08
1500 1552 3.074412 TCTAGCCTAACAAACTGCTTGC 58.926 45.455 0.00 0.00 38.75 4.01
1501 1553 4.997395 TCTTCTAGCCTAACAAACTGCTTG 59.003 41.667 0.00 0.00 41.19 4.01
1502 1554 5.012148 TCTCTTCTAGCCTAACAAACTGCTT 59.988 40.000 0.00 0.00 35.34 3.91
1503 1555 4.528596 TCTCTTCTAGCCTAACAAACTGCT 59.471 41.667 0.00 0.00 37.84 4.24
1506 1558 6.859112 TCATCTCTTCTAGCCTAACAAACT 57.141 37.500 0.00 0.00 0.00 2.66
1507 1559 7.907214 TTTCATCTCTTCTAGCCTAACAAAC 57.093 36.000 0.00 0.00 0.00 2.93
1508 1560 7.770897 GGATTTCATCTCTTCTAGCCTAACAAA 59.229 37.037 0.00 0.00 0.00 2.83
1524 1588 4.878397 CCTCGTAGCAAAAGGATTTCATCT 59.122 41.667 0.00 0.00 37.28 2.90
1529 1593 4.508662 CTCTCCTCGTAGCAAAAGGATTT 58.491 43.478 0.00 0.00 42.41 2.17
1543 1607 1.893786 CACAGGAACCCTCTCCTCG 59.106 63.158 0.00 0.00 44.46 4.63
1551 1615 1.644786 CGGAAATCGCACAGGAACCC 61.645 60.000 0.00 0.00 0.00 4.11
1552 1616 1.794222 CGGAAATCGCACAGGAACC 59.206 57.895 0.00 0.00 0.00 3.62
1562 1626 1.008194 CCATGCCATGCGGAAATCG 60.008 57.895 0.00 0.00 42.76 3.34
1563 1627 0.249155 CACCATGCCATGCGGAAATC 60.249 55.000 0.00 0.00 0.00 2.17
1564 1628 1.678598 CCACCATGCCATGCGGAAAT 61.679 55.000 0.00 0.00 0.00 2.17
1565 1629 2.349672 CCACCATGCCATGCGGAAA 61.350 57.895 0.00 0.00 0.00 3.13
1566 1630 2.755064 CCACCATGCCATGCGGAA 60.755 61.111 0.00 0.00 0.00 4.30
1567 1631 4.045781 ACCACCATGCCATGCGGA 62.046 61.111 15.86 0.00 0.00 5.54
1568 1632 3.829044 CACCACCATGCCATGCGG 61.829 66.667 9.21 9.21 0.00 5.69
1569 1633 4.501714 GCACCACCATGCCATGCG 62.502 66.667 0.00 0.00 39.86 4.73
1575 1639 2.639327 GGTCAAGGCACCACCATGC 61.639 63.158 0.00 0.00 45.34 4.06
1576 1640 1.075482 AGGTCAAGGCACCACCATG 59.925 57.895 2.14 0.00 43.14 3.66
1577 1641 1.075482 CAGGTCAAGGCACCACCAT 59.925 57.895 2.14 0.00 43.14 3.55
1578 1642 2.337879 GACAGGTCAAGGCACCACCA 62.338 60.000 0.00 0.00 43.14 4.17
1579 1643 1.600916 GACAGGTCAAGGCACCACC 60.601 63.158 0.00 0.00 39.16 4.61
1580 1644 1.148273 TGACAGGTCAAGGCACCAC 59.852 57.895 0.00 0.00 39.16 4.16
1581 1645 1.148273 GTGACAGGTCAAGGCACCA 59.852 57.895 3.28 0.00 41.85 4.17
1588 1652 5.042463 TCACAAATTAGGTGACAGGTCAA 57.958 39.130 3.28 0.00 41.85 3.18
1621 1685 7.639113 AAATTTTCTGGTGTTCTTGTCTACA 57.361 32.000 0.00 0.00 0.00 2.74
1792 1856 4.042684 GGAATCATTAGCCATCTCCCTTCT 59.957 45.833 0.00 0.00 0.00 2.85
1831 1895 4.262164 CCCAAGTTTCAGAAACAAGGATGG 60.262 45.833 26.54 22.29 43.79 3.51
1891 1955 5.104693 ACATTACGGGGTCAGATGATAACAA 60.105 40.000 0.00 0.00 0.00 2.83
1997 2102 6.655930 AGCCCGTCCTAAACATTAGAATTAA 58.344 36.000 0.00 0.00 0.00 1.40
2009 2114 2.026915 GGGTTCTAAAGCCCGTCCTAAA 60.027 50.000 0.00 0.00 43.23 1.85
2022 2127 7.523052 GCATAAGTGTGTGAAATTGGGTTCTAA 60.523 37.037 0.00 0.00 0.00 2.10
2034 2148 8.257306 TCATACTTATGAGCATAAGTGTGTGAA 58.743 33.333 33.99 23.69 40.09 3.18
2122 2239 3.395639 CAAGTTCACCAAATTGCAGCAT 58.604 40.909 0.00 0.00 31.30 3.79
2136 2253 1.452110 CACCGATCATGCCAAGTTCA 58.548 50.000 0.00 0.00 0.00 3.18
2150 2267 5.071370 TCAAAAAGGTAAATAAGCCACCGA 58.929 37.500 0.00 0.00 37.42 4.69
2378 2495 5.851720 AGATCACGCACATCTTCAATAGAT 58.148 37.500 0.00 0.00 44.60 1.98
2505 2622 5.686753 TGTAACAGGGGCGTGATAATTAAT 58.313 37.500 0.00 0.00 0.00 1.40
2604 2740 6.449698 TGCTTTCTCAATGTCAAATTTCCTC 58.550 36.000 0.00 0.00 0.00 3.71
2745 2889 2.584835 AATGTGGCTCCAGCTGTTAA 57.415 45.000 13.81 0.00 41.70 2.01
3124 3268 6.624642 GCTGAAATTTTTCAAACCCTGCAAAA 60.625 34.615 7.13 0.00 45.61 2.44
3234 3378 3.740832 TGAATGCCGAACTATGCTTATCG 59.259 43.478 0.00 0.00 35.19 2.92
3662 3814 1.717032 ACTCAGGACAGGTGCAAGTA 58.283 50.000 0.00 0.00 0.00 2.24
4067 4222 2.879103 TAGAGCTTTGGGGGAAGTTG 57.121 50.000 0.00 0.00 0.00 3.16
4174 4329 3.703556 TCAATTGGCTGGTTCTTTGTTCA 59.296 39.130 5.42 0.00 0.00 3.18
4233 4388 5.620206 TCAAATTTCAGTTCAGCTACCTGA 58.380 37.500 5.34 5.34 46.03 3.86
4234 4389 5.947228 TCAAATTTCAGTTCAGCTACCTG 57.053 39.130 0.00 0.00 40.54 4.00
4235 4390 5.416952 CCATCAAATTTCAGTTCAGCTACCT 59.583 40.000 0.00 0.00 0.00 3.08
4341 4501 2.892852 TGGAGAAAGGCAGTTCCAATTG 59.107 45.455 0.00 0.00 36.81 2.32
4356 4516 5.500234 CCTATGAGGTTGTTTGATGGAGAA 58.500 41.667 0.00 0.00 0.00 2.87
4447 4610 5.538433 TGGAAATTTAAAACAGCTAGCCAGT 59.462 36.000 12.13 7.94 0.00 4.00
4494 4659 4.251103 ACAGAGAAACAAGAAAAGGGGT 57.749 40.909 0.00 0.00 0.00 4.95
4501 4666 2.687935 GTGCCCAACAGAGAAACAAGAA 59.312 45.455 0.00 0.00 0.00 2.52
4533 4699 4.853924 AGGCAAGTTCAAACCAATGTAG 57.146 40.909 0.00 0.00 0.00 2.74
4538 4704 3.516615 CGAAAAGGCAAGTTCAAACCAA 58.483 40.909 0.00 0.00 0.00 3.67
4619 4785 3.701040 ACTGCTTTGTCAACAACAGGAAT 59.299 39.130 14.38 0.00 39.58 3.01
4678 4844 3.116900 ACAAACCTTTGGATGGTAAGGGT 60.117 43.478 0.00 0.00 43.22 4.34
4681 4847 6.183360 ACAAGAACAAACCTTTGGATGGTAAG 60.183 38.462 2.94 0.00 42.34 2.34
4682 4848 5.659079 ACAAGAACAAACCTTTGGATGGTAA 59.341 36.000 2.94 0.00 42.34 2.85
4684 4850 4.030216 ACAAGAACAAACCTTTGGATGGT 58.970 39.130 2.94 0.00 42.34 3.55
4687 4853 4.956075 ACTGACAAGAACAAACCTTTGGAT 59.044 37.500 2.94 0.00 42.34 3.41
4688 4854 4.340617 ACTGACAAGAACAAACCTTTGGA 58.659 39.130 2.94 0.00 42.34 3.53
4697 4863 5.321959 TGCAATTGAACTGACAAGAACAA 57.678 34.783 10.34 0.00 33.22 2.83
4699 4865 4.293415 CCTGCAATTGAACTGACAAGAAC 58.707 43.478 10.34 0.00 33.22 3.01
4701 4867 2.886523 CCCTGCAATTGAACTGACAAGA 59.113 45.455 10.34 0.00 33.22 3.02
4702 4868 2.624838 ACCCTGCAATTGAACTGACAAG 59.375 45.455 10.34 0.00 33.22 3.16
4709 4875 3.569701 TCTTTCAGACCCTGCAATTGAAC 59.430 43.478 10.34 0.00 0.00 3.18
4712 4878 3.508793 ACATCTTTCAGACCCTGCAATTG 59.491 43.478 0.00 0.00 0.00 2.32
4714 4880 3.009916 AGACATCTTTCAGACCCTGCAAT 59.990 43.478 0.00 0.00 0.00 3.56
4716 4882 1.980765 AGACATCTTTCAGACCCTGCA 59.019 47.619 0.00 0.00 0.00 4.41
4717 4883 2.777832 AGACATCTTTCAGACCCTGC 57.222 50.000 0.00 0.00 0.00 4.85
4718 4884 4.252073 CAGAAGACATCTTTCAGACCCTG 58.748 47.826 0.00 0.00 35.73 4.45
4719 4885 3.906846 ACAGAAGACATCTTTCAGACCCT 59.093 43.478 0.00 0.00 35.73 4.34
4721 4887 6.367422 CAGTAACAGAAGACATCTTTCAGACC 59.633 42.308 0.00 0.00 35.73 3.85
4722 4888 6.128688 GCAGTAACAGAAGACATCTTTCAGAC 60.129 42.308 0.00 0.00 35.73 3.51
4729 4895 4.623932 TTGGCAGTAACAGAAGACATCT 57.376 40.909 0.00 0.00 39.68 2.90
4735 4901 3.882888 TCAGGTTTTGGCAGTAACAGAAG 59.117 43.478 14.04 3.93 0.00 2.85
4741 4907 5.480073 AGCAAATATCAGGTTTTGGCAGTAA 59.520 36.000 0.00 0.00 34.22 2.24
4763 4929 6.760770 AGAGTCTACATTCAAGAAATAGCAGC 59.239 38.462 0.00 0.00 0.00 5.25
4764 4930 8.715191 AAGAGTCTACATTCAAGAAATAGCAG 57.285 34.615 0.00 0.00 0.00 4.24
5032 5198 0.807496 GCCAGCCTTTGCAAGACTAG 59.193 55.000 0.00 0.00 41.13 2.57
5268 5434 2.348411 ACAACAAGTTCTGGAGTGGG 57.652 50.000 0.00 0.00 0.00 4.61
5331 5500 4.582701 TGAATTTCGAAAATGCACAGGT 57.417 36.364 15.66 0.00 0.00 4.00
5355 5524 4.079850 AGCCTCGTGCAGAGCCTG 62.080 66.667 7.44 0.00 45.54 4.85
5375 5544 3.902881 AGTAGTTCCTCTTGCCTGATG 57.097 47.619 0.00 0.00 0.00 3.07
5445 5614 4.796038 AATGAAAGGACTGATTGCCTTG 57.204 40.909 0.00 0.00 43.46 3.61
5448 5617 4.439289 GCACTAATGAAAGGACTGATTGCC 60.439 45.833 0.00 0.00 0.00 4.52
5452 5624 4.851639 AGGCACTAATGAAAGGACTGAT 57.148 40.909 0.00 0.00 36.02 2.90
5455 5627 5.833131 TGAAAAAGGCACTAATGAAAGGACT 59.167 36.000 0.00 0.00 38.49 3.85
5456 5628 6.084326 TGAAAAAGGCACTAATGAAAGGAC 57.916 37.500 0.00 0.00 38.49 3.85
5458 5630 6.928520 AGATGAAAAAGGCACTAATGAAAGG 58.071 36.000 0.00 0.00 38.49 3.11
5460 5632 7.765695 AGAGATGAAAAAGGCACTAATGAAA 57.234 32.000 0.00 0.00 38.49 2.69
5461 5633 7.448161 TCAAGAGATGAAAAAGGCACTAATGAA 59.552 33.333 0.00 0.00 33.04 2.57
5463 5635 7.149569 TCAAGAGATGAAAAAGGCACTAATG 57.850 36.000 0.00 0.00 33.04 1.90
5464 5636 7.833183 AGATCAAGAGATGAAAAAGGCACTAAT 59.167 33.333 0.00 0.00 42.54 1.73
5466 5638 6.596888 CAGATCAAGAGATGAAAAAGGCACTA 59.403 38.462 0.00 0.00 42.54 2.74
5467 5639 5.415077 CAGATCAAGAGATGAAAAAGGCACT 59.585 40.000 0.00 0.00 42.54 4.40
5468 5640 5.182760 ACAGATCAAGAGATGAAAAAGGCAC 59.817 40.000 0.00 0.00 42.54 5.01
5469 5641 5.319453 ACAGATCAAGAGATGAAAAAGGCA 58.681 37.500 0.00 0.00 42.54 4.75
5470 5642 5.893897 ACAGATCAAGAGATGAAAAAGGC 57.106 39.130 0.00 0.00 42.54 4.35
5471 5643 8.108551 AGAAACAGATCAAGAGATGAAAAAGG 57.891 34.615 0.00 0.00 42.54 3.11
5472 5644 8.781196 TGAGAAACAGATCAAGAGATGAAAAAG 58.219 33.333 0.00 0.00 42.54 2.27
5519 5691 5.351458 GGCTTCTTCTTCTTTTTCTGCAAA 58.649 37.500 0.00 0.00 0.00 3.68
5626 5831 5.168526 TCACATTTGTCAGGAAAACGAAG 57.831 39.130 0.00 0.00 0.00 3.79
5650 5855 7.624360 TTTACAAACCCATATGTCTGTCATC 57.376 36.000 1.24 0.00 37.91 2.92
5652 5857 6.376864 CCATTTACAAACCCATATGTCTGTCA 59.623 38.462 1.24 0.00 0.00 3.58
5727 5932 0.183492 AAGACAGGCAGGCTGAAACA 59.817 50.000 29.85 0.00 34.00 2.83
5781 5986 1.233019 CTGCAGAACCAAGACAGGTG 58.767 55.000 8.42 0.00 42.25 4.00
5814 6019 4.023021 GGTGAAAGGCGTGTAACCAATAAA 60.023 41.667 0.00 0.00 0.00 1.40
5876 6087 7.282224 TGTTATTTGCATCCTATGGAACTACAC 59.718 37.037 0.00 0.00 40.40 2.90
5932 6186 4.098349 GCCTTGAGAAACATAATGATGCCA 59.902 41.667 0.00 0.00 36.43 4.92
5946 6200 1.004745 GAGGATTGTGGGCCTTGAGAA 59.995 52.381 4.53 0.00 33.84 2.87
5947 6201 0.620556 GAGGATTGTGGGCCTTGAGA 59.379 55.000 4.53 0.00 33.84 3.27
5948 6202 0.394899 GGAGGATTGTGGGCCTTGAG 60.395 60.000 4.53 0.00 33.84 3.02
5949 6203 1.139498 TGGAGGATTGTGGGCCTTGA 61.139 55.000 4.53 0.00 33.84 3.02
5950 6204 0.682209 CTGGAGGATTGTGGGCCTTG 60.682 60.000 4.53 0.00 33.84 3.61
5951 6205 1.693640 CTGGAGGATTGTGGGCCTT 59.306 57.895 4.53 0.00 33.84 4.35
5952 6206 2.988839 GCTGGAGGATTGTGGGCCT 61.989 63.158 4.53 0.00 37.18 5.19
5953 6207 2.440980 GCTGGAGGATTGTGGGCC 60.441 66.667 0.00 0.00 0.00 5.80
5954 6208 1.751927 CAGCTGGAGGATTGTGGGC 60.752 63.158 5.57 0.00 0.00 5.36
5955 6209 1.751927 GCAGCTGGAGGATTGTGGG 60.752 63.158 17.12 0.00 0.00 4.61
6017 6282 8.450578 TCTGAAGAATGTTGTGTAACTGAATT 57.549 30.769 0.00 0.00 38.04 2.17
6068 6333 4.580580 AGAACTGTAAGGCCTTTGTCTTTG 59.419 41.667 26.08 9.69 37.63 2.77
6170 6447 6.146837 AGAGATCGAACTGTTTCATGTGAAAG 59.853 38.462 8.34 1.30 43.82 2.62
6241 6519 6.043411 CCAAGGCTGAATTGTAGTACTACTC 58.957 44.000 28.56 19.90 37.00 2.59
6246 6524 3.343617 TGCCAAGGCTGAATTGTAGTAC 58.656 45.455 12.96 0.00 42.51 2.73
6247 6525 3.712016 TGCCAAGGCTGAATTGTAGTA 57.288 42.857 12.96 0.00 42.51 1.82
6248 6526 2.584835 TGCCAAGGCTGAATTGTAGT 57.415 45.000 12.96 0.00 42.51 2.73
6263 6545 2.170397 ACACATACGATCTGGAATGCCA 59.830 45.455 0.00 0.00 43.47 4.92
6276 6558 8.812147 AAAGGATACATACATACACACATACG 57.188 34.615 0.00 0.00 41.41 3.06
6302 6600 5.181622 AGAAAGAGAGAGAAAAATGCAGCAG 59.818 40.000 0.00 0.00 0.00 4.24
6315 6613 6.147656 GCAAAGGAAGAAAGAGAAAGAGAGAG 59.852 42.308 0.00 0.00 0.00 3.20
6316 6614 5.994668 GCAAAGGAAGAAAGAGAAAGAGAGA 59.005 40.000 0.00 0.00 0.00 3.10
6334 6632 3.744155 GGGGAGGGGGAGCAAAGG 61.744 72.222 0.00 0.00 0.00 3.11
6478 6778 3.254060 TGTCAATTACTCGCTCAAGCTC 58.746 45.455 0.00 0.00 39.32 4.09
6500 6800 6.905578 GGATACGTGAAATGTGGTAGTTTTT 58.094 36.000 0.00 0.00 36.26 1.94
6501 6801 6.490566 GGATACGTGAAATGTGGTAGTTTT 57.509 37.500 0.00 0.00 36.26 2.43
6519 6819 2.100418 GGTAGTTCTGTGGGACGGATAC 59.900 54.545 0.00 0.00 32.78 2.24
6520 6820 2.291735 TGGTAGTTCTGTGGGACGGATA 60.292 50.000 0.00 0.00 32.78 2.59
6521 6821 1.192428 GGTAGTTCTGTGGGACGGAT 58.808 55.000 0.00 0.00 32.78 4.18
6522 6822 0.178955 TGGTAGTTCTGTGGGACGGA 60.179 55.000 0.00 0.00 0.00 4.69
6523 6823 0.037605 GTGGTAGTTCTGTGGGACGG 60.038 60.000 0.00 0.00 0.00 4.79
6524 6824 0.677288 TGTGGTAGTTCTGTGGGACG 59.323 55.000 0.00 0.00 0.00 4.79
6525 6825 3.418684 AATGTGGTAGTTCTGTGGGAC 57.581 47.619 0.00 0.00 0.00 4.46
6526 6826 4.447138 AAAATGTGGTAGTTCTGTGGGA 57.553 40.909 0.00 0.00 0.00 4.37
6527 6827 6.642707 TTTAAAATGTGGTAGTTCTGTGGG 57.357 37.500 0.00 0.00 0.00 4.61
6528 6828 8.194769 AGTTTTTAAAATGTGGTAGTTCTGTGG 58.805 33.333 0.55 0.00 0.00 4.17
6529 6829 9.019764 CAGTTTTTAAAATGTGGTAGTTCTGTG 57.980 33.333 0.55 0.00 0.00 3.66
6530 6830 8.962679 TCAGTTTTTAAAATGTGGTAGTTCTGT 58.037 29.630 0.55 0.00 35.64 3.41
6531 6831 9.233232 GTCAGTTTTTAAAATGTGGTAGTTCTG 57.767 33.333 0.55 0.00 35.64 3.02
6532 6832 8.410912 GGTCAGTTTTTAAAATGTGGTAGTTCT 58.589 33.333 0.55 0.00 35.64 3.01
6533 6833 8.570096 GGTCAGTTTTTAAAATGTGGTAGTTC 57.430 34.615 0.55 0.00 35.64 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.