Multiple sequence alignment - TraesCS6B01G125100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G125100 chr6B 100.000 3461 0 0 1 3461 120133588 120130128 0.000000e+00 6392.0
1 TraesCS6B01G125100 chr6B 87.841 2418 225 41 625 3022 120355163 120352795 0.000000e+00 2772.0
2 TraesCS6B01G125100 chr6B 90.223 2066 168 23 592 2641 120595522 120593475 0.000000e+00 2665.0
3 TraesCS6B01G125100 chr6B 87.234 282 26 5 161 437 120595806 120595530 2.590000e-81 313.0
4 TraesCS6B01G125100 chr6B 87.907 215 21 4 224 437 120355403 120355193 7.420000e-62 248.0
5 TraesCS6B01G125100 chr6B 88.750 160 15 1 417 573 92752325 92752166 3.530000e-45 193.0
6 TraesCS6B01G125100 chr6B 88.415 164 13 2 417 574 548811249 548811086 3.530000e-45 193.0
7 TraesCS6B01G125100 chr6B 87.755 98 10 2 341 437 120317737 120317641 2.820000e-21 113.0
8 TraesCS6B01G125100 chr6D 92.977 2748 154 22 631 3357 53144881 53142152 0.000000e+00 3969.0
9 TraesCS6B01G125100 chr6D 88.085 2459 205 52 592 3022 51342831 51345229 0.000000e+00 2837.0
10 TraesCS6B01G125100 chr6D 91.117 2094 165 15 604 2686 51068112 51070195 0.000000e+00 2817.0
11 TraesCS6B01G125100 chr6D 85.959 2514 247 57 592 3072 53176109 53173669 0.000000e+00 2590.0
12 TraesCS6B01G125100 chr6D 89.557 2030 174 22 631 2641 51348750 51350760 0.000000e+00 2540.0
13 TraesCS6B01G125100 chr6D 87.132 2207 224 27 592 2779 50956257 50958422 0.000000e+00 2447.0
14 TraesCS6B01G125100 chr6D 87.589 282 25 5 161 437 51342547 51342823 5.570000e-83 318.0
15 TraesCS6B01G125100 chr6D 84.615 260 18 7 161 418 50955991 50956230 4.460000e-59 239.0
16 TraesCS6B01G125100 chr6D 82.857 280 24 9 161 437 53176375 53176117 2.690000e-56 230.0
17 TraesCS6B01G125100 chr6D 83.936 249 27 8 197 437 51073705 51073948 3.480000e-55 226.0
18 TraesCS6B01G125100 chr6D 84.716 229 23 7 197 418 51348488 51348711 5.820000e-53 219.0
19 TraesCS6B01G125100 chr6D 88.889 171 14 1 409 574 308575395 308575225 4.530000e-49 206.0
20 TraesCS6B01G125100 chr3D 87.382 2536 231 51 595 3083 560024978 560022485 0.000000e+00 2828.0
21 TraesCS6B01G125100 chr3D 92.453 53 1 3 3412 3461 560022360 560022308 4.790000e-09 73.1
22 TraesCS6B01G125100 chr1B 87.326 2438 245 39 592 2988 4110081 4112495 0.000000e+00 2732.0
23 TraesCS6B01G125100 chr1B 87.364 2390 235 35 592 2951 4519096 4516744 0.000000e+00 2678.0
24 TraesCS6B01G125100 chr1B 86.369 2465 222 55 707 3100 4597570 4595149 0.000000e+00 2586.0
25 TraesCS6B01G125100 chr1B 81.711 678 70 21 2479 3127 46693720 46694372 1.840000e-142 516.0
26 TraesCS6B01G125100 chr1B 84.058 276 34 5 2582 2848 4146585 4146859 1.230000e-64 257.0
27 TraesCS6B01G125100 chr1B 82.042 284 34 9 2582 2856 4539786 4539511 3.480000e-55 226.0
28 TraesCS6B01G125100 chr1B 84.362 243 16 14 3229 3461 46694394 46694624 5.820000e-53 219.0
29 TraesCS6B01G125100 chr1B 84.184 196 20 5 2912 3097 4146889 4147083 2.740000e-41 180.0
30 TraesCS6B01G125100 chr1B 83.920 199 21 5 2912 3100 4539489 4539292 2.740000e-41 180.0
31 TraesCS6B01G125100 chr1B 89.167 120 6 4 42 160 332136160 332136273 3.600000e-30 143.0
32 TraesCS6B01G125100 chr1B 87.402 127 9 5 42 167 616892863 616892743 4.660000e-29 139.0
33 TraesCS6B01G125100 chr1B 93.103 87 6 0 3041 3127 4516591 4516505 1.010000e-25 128.0
34 TraesCS6B01G125100 chr1B 85.950 121 12 4 3327 3446 4912721 4912605 1.300000e-24 124.0
35 TraesCS6B01G125100 chr1B 91.304 46 1 1 3412 3457 4797554 4797512 3.730000e-05 60.2
36 TraesCS6B01G125100 chr6A 93.781 1817 71 14 1657 3461 64065217 64063431 0.000000e+00 2691.0
37 TraesCS6B01G125100 chr6A 84.885 2514 266 66 592 3072 64167952 64165520 0.000000e+00 2433.0
38 TraesCS6B01G125100 chr6A 87.452 263 20 5 161 414 64175485 64175227 1.220000e-74 291.0
39 TraesCS6B01G125100 chr1D 87.472 2243 199 48 609 2813 33984247 33986445 0.000000e+00 2510.0
40 TraesCS6B01G125100 chr1D 87.640 178 19 1 400 574 242825758 242825935 1.630000e-48 204.0
41 TraesCS6B01G125100 chr1D 91.398 93 8 0 3035 3127 33988072 33988164 1.010000e-25 128.0
42 TraesCS6B01G125100 chr1A 83.373 415 43 12 2700 3100 3015094 3015496 9.130000e-96 361.0
43 TraesCS6B01G125100 chr5B 80.652 491 48 26 2540 3011 617172519 617172981 1.540000e-88 337.0
44 TraesCS6B01G125100 chr5B 89.441 161 14 1 417 574 384587699 384587539 2.110000e-47 200.0
45 TraesCS6B01G125100 chr5B 94.215 121 2 2 41 160 34900293 34900409 2.740000e-41 180.0
46 TraesCS6B01G125100 chr5B 87.302 126 9 4 42 166 38365240 38365121 1.680000e-28 137.0
47 TraesCS6B01G125100 chr2D 88.957 163 13 1 417 574 73402885 73403047 2.730000e-46 196.0
48 TraesCS6B01G125100 chr2D 90.000 120 5 5 42 160 58812096 58812209 7.740000e-32 148.0
49 TraesCS6B01G125100 chr2D 90.000 120 5 5 42 160 393756264 393756377 7.740000e-32 148.0
50 TraesCS6B01G125100 chr7D 88.344 163 14 1 417 574 171315996 171316158 1.270000e-44 191.0
51 TraesCS6B01G125100 chr7D 81.061 264 22 12 165 411 548230680 548230932 5.900000e-43 185.0
52 TraesCS6B01G125100 chr7B 88.344 163 14 1 417 574 477435890 477435728 1.270000e-44 191.0
53 TraesCS6B01G125100 chr7B 91.057 123 7 3 42 160 191141178 191141300 2.760000e-36 163.0
54 TraesCS6B01G125100 chr5D 88.344 163 14 1 417 574 322370003 322370165 1.270000e-44 191.0
55 TraesCS6B01G125100 chr5D 87.500 128 8 5 37 163 320886292 320886172 1.300000e-29 141.0
56 TraesCS6B01G125100 chr5D 93.023 86 6 0 3042 3127 497870076 497870161 3.630000e-25 126.0
57 TraesCS6B01G125100 chr3B 88.966 145 15 1 726 870 409335236 409335093 9.870000e-41 178.0
58 TraesCS6B01G125100 chr4D 88.710 124 7 5 42 164 392514708 392514825 1.000000e-30 145.0
59 TraesCS6B01G125100 chrUn 83.478 115 18 1 3255 3368 318171398 318171512 4.720000e-19 106.0
60 TraesCS6B01G125100 chrUn 82.558 86 8 3 772 850 325465671 325465756 6.200000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G125100 chr6B 120130128 120133588 3460 True 6392.00 6392 100.00000 1 3461 1 chr6B.!!$R2 3460
1 TraesCS6B01G125100 chr6B 120352795 120355403 2608 True 1510.00 2772 87.87400 224 3022 2 chr6B.!!$R5 2798
2 TraesCS6B01G125100 chr6B 120593475 120595806 2331 True 1489.00 2665 88.72850 161 2641 2 chr6B.!!$R6 2480
3 TraesCS6B01G125100 chr6D 53142152 53144881 2729 True 3969.00 3969 92.97700 631 3357 1 chr6D.!!$R1 2726
4 TraesCS6B01G125100 chr6D 51068112 51073948 5836 False 1521.50 2817 87.52650 197 2686 2 chr6D.!!$F2 2489
5 TraesCS6B01G125100 chr6D 51342547 51350760 8213 False 1478.50 2837 87.48675 161 3022 4 chr6D.!!$F3 2861
6 TraesCS6B01G125100 chr6D 53173669 53176375 2706 True 1410.00 2590 84.40800 161 3072 2 chr6D.!!$R3 2911
7 TraesCS6B01G125100 chr6D 50955991 50958422 2431 False 1343.00 2447 85.87350 161 2779 2 chr6D.!!$F1 2618
8 TraesCS6B01G125100 chr3D 560022308 560024978 2670 True 1450.55 2828 89.91750 595 3461 2 chr3D.!!$R1 2866
9 TraesCS6B01G125100 chr1B 4110081 4112495 2414 False 2732.00 2732 87.32600 592 2988 1 chr1B.!!$F1 2396
10 TraesCS6B01G125100 chr1B 4595149 4597570 2421 True 2586.00 2586 86.36900 707 3100 1 chr1B.!!$R1 2393
11 TraesCS6B01G125100 chr1B 4516505 4519096 2591 True 1403.00 2678 90.23350 592 3127 2 chr1B.!!$R5 2535
12 TraesCS6B01G125100 chr1B 46693720 46694624 904 False 367.50 516 83.03650 2479 3461 2 chr1B.!!$F4 982
13 TraesCS6B01G125100 chr6A 64063431 64065217 1786 True 2691.00 2691 93.78100 1657 3461 1 chr6A.!!$R1 1804
14 TraesCS6B01G125100 chr6A 64165520 64167952 2432 True 2433.00 2433 84.88500 592 3072 1 chr6A.!!$R2 2480
15 TraesCS6B01G125100 chr1D 33984247 33988164 3917 False 1319.00 2510 89.43500 609 3127 2 chr1D.!!$F2 2518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
577 583 0.115745 TAGGAACGGAGGGAGTTGGT 59.884 55.0 0.00 0.00 31.14 3.67 F
586 592 0.178953 AGGGAGTTGGTGCAATTGCT 60.179 50.0 29.37 9.67 42.66 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1374 1.079503 GGTCAATCAGCGAGGAACAC 58.920 55.000 0.0 0.0 0.00 3.32 R
2238 2332 0.327924 TACTCAAGCATGGGGTGTGG 59.672 55.000 0.0 0.0 0.00 4.17 R
2526 2625 1.080298 GCACAGCCTTGTCCAATGC 60.080 57.895 0.0 0.0 34.62 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.918067 CCTGACTGGTAGTATCATCCATAA 57.082 41.667 0.00 0.00 0.00 1.90
37 38 7.303182 CCTGACTGGTAGTATCATCCATAAA 57.697 40.000 0.00 0.00 0.00 1.40
38 39 7.735917 CCTGACTGGTAGTATCATCCATAAAA 58.264 38.462 0.00 0.00 0.00 1.52
39 40 7.875041 CCTGACTGGTAGTATCATCCATAAAAG 59.125 40.741 0.00 0.00 0.00 2.27
40 41 8.319057 TGACTGGTAGTATCATCCATAAAAGT 57.681 34.615 0.00 0.00 0.00 2.66
41 42 8.768397 TGACTGGTAGTATCATCCATAAAAGTT 58.232 33.333 0.00 0.00 0.00 2.66
46 47 9.708092 GGTAGTATCATCCATAAAAGTTACTCC 57.292 37.037 0.00 0.00 0.00 3.85
47 48 9.708092 GTAGTATCATCCATAAAAGTTACTCCC 57.292 37.037 0.00 0.00 0.00 4.30
48 49 8.568617 AGTATCATCCATAAAAGTTACTCCCT 57.431 34.615 0.00 0.00 0.00 4.20
49 50 8.652290 AGTATCATCCATAAAAGTTACTCCCTC 58.348 37.037 0.00 0.00 0.00 4.30
50 51 6.248569 TCATCCATAAAAGTTACTCCCTCC 57.751 41.667 0.00 0.00 0.00 4.30
51 52 4.748277 TCCATAAAAGTTACTCCCTCCG 57.252 45.455 0.00 0.00 0.00 4.63
52 53 4.098894 TCCATAAAAGTTACTCCCTCCGT 58.901 43.478 0.00 0.00 0.00 4.69
53 54 4.533311 TCCATAAAAGTTACTCCCTCCGTT 59.467 41.667 0.00 0.00 0.00 4.44
54 55 4.874396 CCATAAAAGTTACTCCCTCCGTTC 59.126 45.833 0.00 0.00 0.00 3.95
55 56 2.738013 AAAGTTACTCCCTCCGTTCG 57.262 50.000 0.00 0.00 0.00 3.95
56 57 0.893447 AAGTTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
57 58 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
58 59 0.890683 GTTACTCCCTCCGTTCGGAA 59.109 55.000 14.79 0.04 33.41 4.30
59 60 1.479730 GTTACTCCCTCCGTTCGGAAT 59.520 52.381 14.79 2.09 33.41 3.01
60 61 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
61 62 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
62 63 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
63 64 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
64 65 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
65 66 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
66 67 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
67 68 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
68 69 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
69 70 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
70 71 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
71 72 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
72 73 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
73 74 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
74 75 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
75 76 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
76 77 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
77 78 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
78 79 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
79 80 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
80 81 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
81 82 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
82 83 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
83 84 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
84 85 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
85 86 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
86 87 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
87 88 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
88 89 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
89 90 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
90 91 7.069455 TGTCTCGGAAATGGATGTATCTAGAAA 59.931 37.037 0.00 0.00 0.00 2.52
91 92 8.091449 GTCTCGGAAATGGATGTATCTAGAAAT 58.909 37.037 0.00 0.00 0.00 2.17
92 93 8.090831 TCTCGGAAATGGATGTATCTAGAAATG 58.909 37.037 0.00 0.00 0.00 2.32
93 94 7.161404 TCGGAAATGGATGTATCTAGAAATGG 58.839 38.462 0.00 0.00 0.00 3.16
94 95 7.016170 TCGGAAATGGATGTATCTAGAAATGGA 59.984 37.037 0.00 0.00 0.00 3.41
95 96 7.826252 CGGAAATGGATGTATCTAGAAATGGAT 59.174 37.037 0.00 0.00 0.00 3.41
96 97 8.954350 GGAAATGGATGTATCTAGAAATGGATG 58.046 37.037 0.00 0.00 0.00 3.51
97 98 9.512588 GAAATGGATGTATCTAGAAATGGATGT 57.487 33.333 0.00 0.00 0.00 3.06
101 102 9.552695 TGGATGTATCTAGAAATGGATGTATCT 57.447 33.333 0.00 0.00 0.00 1.98
135 136 8.749841 AATACGTCTAGATACATCATTTCTGC 57.250 34.615 0.00 0.00 0.00 4.26
136 137 5.215903 ACGTCTAGATACATCATTTCTGCG 58.784 41.667 0.00 0.00 0.00 5.18
137 138 5.008712 ACGTCTAGATACATCATTTCTGCGA 59.991 40.000 0.00 0.00 0.00 5.10
138 139 5.340932 CGTCTAGATACATCATTTCTGCGAC 59.659 44.000 0.00 0.00 0.00 5.19
139 140 6.209361 GTCTAGATACATCATTTCTGCGACA 58.791 40.000 0.00 0.00 0.00 4.35
140 141 6.697455 GTCTAGATACATCATTTCTGCGACAA 59.303 38.462 0.00 0.00 0.00 3.18
141 142 5.980698 AGATACATCATTTCTGCGACAAG 57.019 39.130 0.00 0.00 0.00 3.16
142 143 5.423015 AGATACATCATTTCTGCGACAAGT 58.577 37.500 0.00 0.00 0.00 3.16
143 144 6.573434 AGATACATCATTTCTGCGACAAGTA 58.427 36.000 0.00 0.00 0.00 2.24
144 145 7.041721 AGATACATCATTTCTGCGACAAGTAA 58.958 34.615 0.00 0.00 0.00 2.24
145 146 7.712639 AGATACATCATTTCTGCGACAAGTAAT 59.287 33.333 0.00 0.00 0.00 1.89
146 147 6.500684 ACATCATTTCTGCGACAAGTAATT 57.499 33.333 0.00 0.00 0.00 1.40
147 148 6.546395 ACATCATTTCTGCGACAAGTAATTC 58.454 36.000 0.00 0.00 0.00 2.17
148 149 5.545658 TCATTTCTGCGACAAGTAATTCC 57.454 39.130 0.00 0.00 0.00 3.01
149 150 4.092821 TCATTTCTGCGACAAGTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
150 151 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
151 152 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
152 153 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
153 154 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
154 155 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
155 156 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
156 157 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
157 158 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
158 159 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
159 160 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
198 204 8.358895 GTCAAACCATTCTCCTAGGTAGTATAC 58.641 40.741 9.08 0.00 42.04 1.47
238 244 3.790408 ACTAGGTGGGAGTACTAGCCTAA 59.210 47.826 0.00 0.00 38.15 2.69
290 296 5.348986 TGAACAGATACTAGATTGGCGTTC 58.651 41.667 0.00 3.06 0.00 3.95
313 319 9.555727 GTTCTCTATTAATAATAACTGCACCCA 57.444 33.333 0.00 0.00 0.00 4.51
322 328 2.281070 CTGCACCCAGTGAACGCT 60.281 61.111 0.00 0.00 35.23 5.07
324 330 1.447317 CTGCACCCAGTGAACGCTTT 61.447 55.000 0.00 0.00 35.23 3.51
346 352 1.994779 GCTGTGGCAAAATGATTTCCG 59.005 47.619 0.00 0.00 38.54 4.30
411 417 4.082625 TGCATGCTCTGGTTTTCATGTTAG 60.083 41.667 20.33 0.00 38.72 2.34
414 420 6.676456 GCATGCTCTGGTTTTCATGTTAGTAG 60.676 42.308 11.37 0.00 38.72 2.57
418 424 7.386848 TGCTCTGGTTTTCATGTTAGTAGTTAC 59.613 37.037 0.00 0.00 0.00 2.50
420 426 9.141400 CTCTGGTTTTCATGTTAGTAGTTACTC 57.859 37.037 0.00 0.00 37.73 2.59
421 427 8.092687 TCTGGTTTTCATGTTAGTAGTTACTCC 58.907 37.037 0.00 0.00 37.73 3.85
423 429 7.016858 TGGTTTTCATGTTAGTAGTTACTCCCT 59.983 37.037 0.00 0.00 37.73 4.20
424 430 7.548427 GGTTTTCATGTTAGTAGTTACTCCCTC 59.452 40.741 0.00 0.00 37.73 4.30
425 431 8.312564 GTTTTCATGTTAGTAGTTACTCCCTCT 58.687 37.037 0.00 0.00 37.73 3.69
426 432 7.406031 TTCATGTTAGTAGTTACTCCCTCTG 57.594 40.000 0.00 0.00 37.73 3.35
427 433 5.360144 TCATGTTAGTAGTTACTCCCTCTGC 59.640 44.000 0.00 0.00 37.73 4.26
428 434 4.931914 TGTTAGTAGTTACTCCCTCTGCT 58.068 43.478 0.00 0.00 37.73 4.24
429 435 4.948621 TGTTAGTAGTTACTCCCTCTGCTC 59.051 45.833 0.00 0.00 37.73 4.26
431 437 2.583566 AGTAGTTACTCCCTCTGCTCCT 59.416 50.000 0.00 0.00 0.00 3.69
437 443 6.386284 AGTTACTCCCTCTGCTCCTAAATAT 58.614 40.000 0.00 0.00 0.00 1.28
438 444 7.536625 AGTTACTCCCTCTGCTCCTAAATATA 58.463 38.462 0.00 0.00 0.00 0.86
439 445 8.011290 AGTTACTCCCTCTGCTCCTAAATATAA 58.989 37.037 0.00 0.00 0.00 0.98
440 446 6.926630 ACTCCCTCTGCTCCTAAATATAAG 57.073 41.667 0.00 0.00 0.00 1.73
441 447 6.386284 ACTCCCTCTGCTCCTAAATATAAGT 58.614 40.000 0.00 0.00 0.00 2.24
442 448 6.495526 ACTCCCTCTGCTCCTAAATATAAGTC 59.504 42.308 0.00 0.00 0.00 3.01
445 451 7.569111 TCCCTCTGCTCCTAAATATAAGTCTTT 59.431 37.037 0.00 0.00 0.00 2.52
446 452 7.875554 CCCTCTGCTCCTAAATATAAGTCTTTC 59.124 40.741 0.00 0.00 0.00 2.62
447 453 8.646900 CCTCTGCTCCTAAATATAAGTCTTTCT 58.353 37.037 0.00 0.00 0.00 2.52
465 471 9.569122 AGTCTTTCTAGAGATTCCACTATAGAC 57.431 37.037 6.78 0.00 39.41 2.59
466 472 9.569122 GTCTTTCTAGAGATTCCACTATAGACT 57.431 37.037 6.78 0.00 39.41 3.24
473 479 8.780846 AGAGATTCCACTATAGACTACATACG 57.219 38.462 6.78 0.00 0.00 3.06
474 480 7.825270 AGAGATTCCACTATAGACTACATACGG 59.175 40.741 6.78 0.00 0.00 4.02
475 481 7.687388 AGATTCCACTATAGACTACATACGGA 58.313 38.462 6.78 0.00 0.00 4.69
476 482 7.825270 AGATTCCACTATAGACTACATACGGAG 59.175 40.741 6.78 0.00 0.00 4.63
477 483 5.243981 TCCACTATAGACTACATACGGAGC 58.756 45.833 6.78 0.00 0.00 4.70
478 484 5.001874 CCACTATAGACTACATACGGAGCA 58.998 45.833 6.78 0.00 0.00 4.26
479 485 5.472478 CCACTATAGACTACATACGGAGCAA 59.528 44.000 6.78 0.00 0.00 3.91
480 486 6.016527 CCACTATAGACTACATACGGAGCAAA 60.017 42.308 6.78 0.00 0.00 3.68
481 487 7.423199 CACTATAGACTACATACGGAGCAAAA 58.577 38.462 6.78 0.00 0.00 2.44
482 488 8.082852 CACTATAGACTACATACGGAGCAAAAT 58.917 37.037 6.78 0.00 0.00 1.82
483 489 9.293404 ACTATAGACTACATACGGAGCAAAATA 57.707 33.333 6.78 0.00 0.00 1.40
486 492 6.875076 AGACTACATACGGAGCAAAATAAGT 58.125 36.000 0.00 0.00 0.00 2.24
487 493 6.757010 AGACTACATACGGAGCAAAATAAGTG 59.243 38.462 0.00 0.00 0.00 3.16
488 494 6.636705 ACTACATACGGAGCAAAATAAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
489 495 7.101054 ACTACATACGGAGCAAAATAAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
490 496 7.769044 ACTACATACGGAGCAAAATAAGTGAAT 59.231 33.333 0.00 0.00 0.00 2.57
491 497 7.391148 ACATACGGAGCAAAATAAGTGAATT 57.609 32.000 0.00 0.00 0.00 2.17
492 498 7.826690 ACATACGGAGCAAAATAAGTGAATTT 58.173 30.769 0.00 0.00 0.00 1.82
493 499 8.303876 ACATACGGAGCAAAATAAGTGAATTTT 58.696 29.630 0.00 0.00 39.14 1.82
494 500 9.139174 CATACGGAGCAAAATAAGTGAATTTTT 57.861 29.630 0.00 0.00 37.03 1.94
496 502 8.515473 ACGGAGCAAAATAAGTGAATTTTTAC 57.485 30.769 0.00 0.00 37.03 2.01
497 503 8.357402 ACGGAGCAAAATAAGTGAATTTTTACT 58.643 29.630 0.00 0.00 37.03 2.24
498 504 8.850452 CGGAGCAAAATAAGTGAATTTTTACTC 58.150 33.333 10.53 10.53 37.03 2.59
499 505 9.914131 GGAGCAAAATAAGTGAATTTTTACTCT 57.086 29.630 14.90 3.94 38.30 3.24
510 516 9.543783 AGTGAATTTTTACTCTAAAAGACGTCT 57.456 29.630 13.58 13.58 38.70 4.18
538 544 6.859112 ACATCTGAATGTAGTTAGTGGAGT 57.141 37.500 0.00 0.00 44.38 3.85
539 545 6.868622 ACATCTGAATGTAGTTAGTGGAGTC 58.131 40.000 0.00 0.00 44.38 3.36
540 546 6.665680 ACATCTGAATGTAGTTAGTGGAGTCT 59.334 38.462 0.00 0.00 44.38 3.24
541 547 6.761099 TCTGAATGTAGTTAGTGGAGTCTC 57.239 41.667 0.00 0.00 0.00 3.36
542 548 6.486056 TCTGAATGTAGTTAGTGGAGTCTCT 58.514 40.000 0.00 0.00 0.00 3.10
543 549 7.631007 TCTGAATGTAGTTAGTGGAGTCTCTA 58.369 38.462 0.00 0.00 0.00 2.43
544 550 8.107729 TCTGAATGTAGTTAGTGGAGTCTCTAA 58.892 37.037 0.00 0.00 0.00 2.10
545 551 8.645814 TGAATGTAGTTAGTGGAGTCTCTAAA 57.354 34.615 0.00 0.00 32.77 1.85
546 552 9.085645 TGAATGTAGTTAGTGGAGTCTCTAAAA 57.914 33.333 0.00 0.00 32.77 1.52
547 553 9.575783 GAATGTAGTTAGTGGAGTCTCTAAAAG 57.424 37.037 0.00 0.00 32.77 2.27
548 554 7.463961 TGTAGTTAGTGGAGTCTCTAAAAGG 57.536 40.000 0.00 0.00 32.77 3.11
549 555 7.236529 TGTAGTTAGTGGAGTCTCTAAAAGGA 58.763 38.462 0.00 0.00 32.77 3.36
550 556 6.593268 AGTTAGTGGAGTCTCTAAAAGGAC 57.407 41.667 0.00 0.00 32.77 3.85
551 557 6.316513 AGTTAGTGGAGTCTCTAAAAGGACT 58.683 40.000 0.00 0.00 44.29 3.85
552 558 6.783482 AGTTAGTGGAGTCTCTAAAAGGACTT 59.217 38.462 0.00 0.00 42.06 3.01
553 559 7.949006 AGTTAGTGGAGTCTCTAAAAGGACTTA 59.051 37.037 0.00 0.00 42.06 2.24
554 560 8.751242 GTTAGTGGAGTCTCTAAAAGGACTTAT 58.249 37.037 0.00 0.00 42.06 1.73
555 561 9.986157 TTAGTGGAGTCTCTAAAAGGACTTATA 57.014 33.333 0.00 0.00 42.06 0.98
557 563 9.495382 AGTGGAGTCTCTAAAAGGACTTATATT 57.505 33.333 0.00 0.00 42.06 1.28
568 574 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
569 575 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
570 576 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
571 577 5.541484 GGACTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
572 578 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
573 579 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
574 580 6.614496 ACTTATATTTAGGAACGGAGGGAGTT 59.386 38.462 0.00 0.00 34.07 3.01
575 581 3.629142 ATTTAGGAACGGAGGGAGTTG 57.371 47.619 0.00 0.00 31.14 3.16
576 582 1.272807 TTAGGAACGGAGGGAGTTGG 58.727 55.000 0.00 0.00 31.14 3.77
577 583 0.115745 TAGGAACGGAGGGAGTTGGT 59.884 55.000 0.00 0.00 31.14 3.67
578 584 1.003718 GGAACGGAGGGAGTTGGTG 60.004 63.158 0.00 0.00 31.14 4.17
579 585 1.671379 GAACGGAGGGAGTTGGTGC 60.671 63.158 0.00 0.00 31.14 5.01
580 586 2.391724 GAACGGAGGGAGTTGGTGCA 62.392 60.000 0.00 0.00 31.14 4.57
581 587 1.990160 AACGGAGGGAGTTGGTGCAA 61.990 55.000 0.00 0.00 0.00 4.08
582 588 1.002134 CGGAGGGAGTTGGTGCAAT 60.002 57.895 0.00 0.00 0.00 3.56
583 589 0.609131 CGGAGGGAGTTGGTGCAATT 60.609 55.000 0.00 0.00 0.00 2.32
584 590 0.890683 GGAGGGAGTTGGTGCAATTG 59.109 55.000 0.00 0.00 0.00 2.32
585 591 0.244721 GAGGGAGTTGGTGCAATTGC 59.755 55.000 23.69 23.69 42.50 3.56
586 592 0.178953 AGGGAGTTGGTGCAATTGCT 60.179 50.000 29.37 9.67 42.66 3.91
587 593 0.681175 GGGAGTTGGTGCAATTGCTT 59.319 50.000 29.37 9.44 42.66 3.91
588 594 1.606224 GGGAGTTGGTGCAATTGCTTG 60.606 52.381 29.37 0.00 42.66 4.01
616 622 0.532862 CAGCACGTGGGTCTTCTTGT 60.533 55.000 18.88 0.00 0.00 3.16
671 682 8.873215 TCTTTGTGTTCTCTTAGTTAGTTCAG 57.127 34.615 0.00 0.00 0.00 3.02
672 683 8.475639 TCTTTGTGTTCTCTTAGTTAGTTCAGT 58.524 33.333 0.00 0.00 0.00 3.41
673 684 9.745880 CTTTGTGTTCTCTTAGTTAGTTCAGTA 57.254 33.333 0.00 0.00 0.00 2.74
700 726 2.695666 ACGCTCTGCTACTTATGATGGT 59.304 45.455 0.00 0.00 0.00 3.55
740 776 4.402829 TGTGGCCTGTAGCTTCATTTTTA 58.597 39.130 3.32 0.00 43.05 1.52
741 777 4.830046 TGTGGCCTGTAGCTTCATTTTTAA 59.170 37.500 3.32 0.00 43.05 1.52
772 808 7.726033 AACAATCTAGAGACAGATAAGGTGT 57.274 36.000 0.00 0.00 34.08 4.16
822 872 1.681264 GAAGACCACACAAGGTTTGGG 59.319 52.381 6.51 0.00 43.38 4.12
844 895 4.202050 GGCGGATACAGAAAATGCTCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
892 953 0.969149 TCTGTCGCCAGTGTGATCTT 59.031 50.000 0.00 0.00 39.82 2.40
897 962 0.926155 CGCCAGTGTGATCTTCATCG 59.074 55.000 0.00 0.00 0.00 3.84
899 964 1.662629 GCCAGTGTGATCTTCATCGTG 59.337 52.381 0.00 0.00 0.00 4.35
909 978 4.034742 TGATCTTCATCGTGACATGCATTG 59.965 41.667 0.00 0.00 0.00 2.82
944 1023 3.845781 AAGTTTGAGTCCAGCTCTTCA 57.154 42.857 0.00 0.00 44.41 3.02
946 1025 2.147150 GTTTGAGTCCAGCTCTTCACC 58.853 52.381 0.00 0.00 44.41 4.02
1102 1190 3.134458 GTGTCAAAGCAGCTCTACAAGT 58.866 45.455 0.00 0.00 0.00 3.16
1152 1242 1.104577 TTGGTTCCGGTCTTTGCACC 61.105 55.000 0.00 0.00 0.00 5.01
1284 1374 6.928520 AGGCCTTTTTGTATTTTCATCTCAG 58.071 36.000 0.00 0.00 0.00 3.35
1635 1726 6.540551 AGTTTGAGTTTGAGAGGAAAAGAGAC 59.459 38.462 0.00 0.00 0.00 3.36
1774 1868 2.649816 ACCTGGCCAGAAATAGGACTTT 59.350 45.455 34.91 0.00 34.31 2.66
1833 1927 1.001974 TGGCTTGAGTATGTTCGTGCT 59.998 47.619 0.00 0.00 0.00 4.40
1923 2017 2.406401 CTGCAGCGCCATTGTAGC 59.594 61.111 2.29 0.00 0.00 3.58
2001 2095 1.745141 GCCCTCAACTGTCCTATGCTG 60.745 57.143 0.00 0.00 0.00 4.41
2090 2184 1.200020 GGGTTTTCTGGCACTCATTCG 59.800 52.381 0.00 0.00 0.00 3.34
2176 2270 1.842562 CCCTCTCATCCTCACCACATT 59.157 52.381 0.00 0.00 0.00 2.71
2238 2332 0.313043 CTGGGATGCGATTCATTGCC 59.687 55.000 0.00 0.00 36.33 4.52
2303 2398 3.703001 AGTTACTGATGTTGGAGTGGG 57.297 47.619 0.00 0.00 0.00 4.61
2310 2405 2.976185 TGATGTTGGAGTGGGTGAACTA 59.024 45.455 0.00 0.00 0.00 2.24
2454 2549 7.261325 TGAAGAAAATTGGTTTGATTGACGAA 58.739 30.769 0.00 0.00 0.00 3.85
2474 2569 5.129485 ACGAATATTGATGAAGTGGTCTCCT 59.871 40.000 0.00 0.00 0.00 3.69
2526 2625 5.180868 AGTCATTAAGCTTTTGACTCTGCAG 59.819 40.000 26.74 7.63 45.16 4.41
2560 2664 0.531532 GTGCATCATCCGACCCAGAG 60.532 60.000 0.00 0.00 0.00 3.35
2620 2737 4.717991 TGCAACGATTTTCCTTTATGACG 58.282 39.130 0.00 0.00 0.00 4.35
2645 2764 6.060788 GTCTAATGATGAATTCTGGAAGGCT 58.939 40.000 7.05 0.00 0.00 4.58
2650 2769 0.455005 GAATTCTGGAAGGCTGCTGC 59.545 55.000 7.10 7.10 38.76 5.25
2724 2856 8.957466 GTAATTCTGGTTGCTTAATTTCTACCT 58.043 33.333 0.00 0.00 0.00 3.08
2767 2902 0.478507 ATTAGGCCCCAAGATTCCCG 59.521 55.000 0.00 0.00 0.00 5.14
2839 4339 5.762825 TCAAGCAAATATCATGAAGCCTC 57.237 39.130 0.00 0.00 0.00 4.70
2969 4486 0.676782 GGACATGTACAAAGGCGGCT 60.677 55.000 5.25 5.25 0.00 5.52
3005 4524 7.450323 TGTTGATATCGACTATTGGAGGATGTA 59.550 37.037 21.26 0.00 0.00 2.29
3146 4801 9.816787 ATAACATCCTCCCTTTGTAACTTTTTA 57.183 29.630 0.00 0.00 0.00 1.52
3147 4802 8.721133 AACATCCTCCCTTTGTAACTTTTTAT 57.279 30.769 0.00 0.00 0.00 1.40
3148 4803 8.721133 ACATCCTCCCTTTGTAACTTTTTATT 57.279 30.769 0.00 0.00 0.00 1.40
3149 4804 9.154632 ACATCCTCCCTTTGTAACTTTTTATTT 57.845 29.630 0.00 0.00 0.00 1.40
3253 4929 1.195448 GACATCCAGCACTCAACAACG 59.805 52.381 0.00 0.00 0.00 4.10
3388 5072 6.379386 TGTTCGTCTGTCTAGTACAAAGATG 58.621 40.000 0.00 0.00 37.74 2.90
3389 5073 6.016527 TGTTCGTCTGTCTAGTACAAAGATGT 60.017 38.462 0.00 0.00 43.74 3.06
3394 5078 7.148950 CGTCTGTCTAGTACAAAGATGTTGAAC 60.149 40.741 0.00 0.00 41.05 3.18
3396 5080 8.082852 TCTGTCTAGTACAAAGATGTTGAACTC 58.917 37.037 0.00 0.00 41.05 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.918067 TTATGGATGATACTACCAGTCAGG 57.082 41.667 0.00 0.00 45.67 3.86
14 15 8.424918 ACTTTTATGGATGATACTACCAGTCAG 58.575 37.037 0.00 0.00 37.12 3.51
15 16 8.319057 ACTTTTATGGATGATACTACCAGTCA 57.681 34.615 0.00 0.00 37.12 3.41
20 21 9.708092 GGAGTAACTTTTATGGATGATACTACC 57.292 37.037 0.00 0.00 0.00 3.18
21 22 9.708092 GGGAGTAACTTTTATGGATGATACTAC 57.292 37.037 0.00 0.00 0.00 2.73
22 23 9.670442 AGGGAGTAACTTTTATGGATGATACTA 57.330 33.333 0.00 0.00 0.00 1.82
23 24 8.568617 AGGGAGTAACTTTTATGGATGATACT 57.431 34.615 0.00 0.00 0.00 2.12
24 25 7.878644 GGAGGGAGTAACTTTTATGGATGATAC 59.121 40.741 0.00 0.00 0.00 2.24
25 26 7.256190 CGGAGGGAGTAACTTTTATGGATGATA 60.256 40.741 0.00 0.00 0.00 2.15
26 27 6.464465 CGGAGGGAGTAACTTTTATGGATGAT 60.464 42.308 0.00 0.00 0.00 2.45
27 28 5.163343 CGGAGGGAGTAACTTTTATGGATGA 60.163 44.000 0.00 0.00 0.00 2.92
28 29 5.057149 CGGAGGGAGTAACTTTTATGGATG 58.943 45.833 0.00 0.00 0.00 3.51
29 30 4.720273 ACGGAGGGAGTAACTTTTATGGAT 59.280 41.667 0.00 0.00 0.00 3.41
30 31 4.098894 ACGGAGGGAGTAACTTTTATGGA 58.901 43.478 0.00 0.00 0.00 3.41
31 32 4.482952 ACGGAGGGAGTAACTTTTATGG 57.517 45.455 0.00 0.00 0.00 2.74
32 33 4.565564 CGAACGGAGGGAGTAACTTTTATG 59.434 45.833 0.00 0.00 0.00 1.90
33 34 4.382362 CCGAACGGAGGGAGTAACTTTTAT 60.382 45.833 7.53 0.00 37.50 1.40
34 35 3.056607 CCGAACGGAGGGAGTAACTTTTA 60.057 47.826 7.53 0.00 37.50 1.52
35 36 2.289257 CCGAACGGAGGGAGTAACTTTT 60.289 50.000 7.53 0.00 37.50 2.27
36 37 1.274447 CCGAACGGAGGGAGTAACTTT 59.726 52.381 7.53 0.00 37.50 2.66
37 38 0.893447 CCGAACGGAGGGAGTAACTT 59.107 55.000 7.53 0.00 37.50 2.66
38 39 0.038744 TCCGAACGGAGGGAGTAACT 59.961 55.000 12.04 0.00 39.76 2.24
39 40 0.890683 TTCCGAACGGAGGGAGTAAC 59.109 55.000 15.34 0.00 46.06 2.50
40 41 1.856629 ATTCCGAACGGAGGGAGTAA 58.143 50.000 15.34 0.34 46.06 2.24
41 42 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
42 43 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
43 44 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
44 45 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
45 46 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
46 47 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
47 48 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
48 49 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
49 50 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
50 51 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
51 52 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
52 53 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
53 54 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
54 55 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
55 56 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
56 57 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
57 58 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
58 59 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
59 60 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
60 61 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
61 62 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
62 63 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
63 64 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
64 65 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
65 66 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
66 67 7.597288 TTTCTAGATACATCCATTTCCGAGA 57.403 36.000 0.00 0.00 0.00 4.04
67 68 7.332926 CCATTTCTAGATACATCCATTTCCGAG 59.667 40.741 0.00 0.00 0.00 4.63
68 69 7.016170 TCCATTTCTAGATACATCCATTTCCGA 59.984 37.037 0.00 0.00 0.00 4.55
69 70 7.161404 TCCATTTCTAGATACATCCATTTCCG 58.839 38.462 0.00 0.00 0.00 4.30
70 71 8.954350 CATCCATTTCTAGATACATCCATTTCC 58.046 37.037 0.00 0.00 0.00 3.13
71 72 9.512588 ACATCCATTTCTAGATACATCCATTTC 57.487 33.333 0.00 0.00 0.00 2.17
75 76 9.552695 AGATACATCCATTTCTAGATACATCCA 57.447 33.333 0.00 0.00 0.00 3.41
109 110 9.197694 GCAGAAATGATGTATCTAGACGTATTT 57.802 33.333 0.00 0.00 0.00 1.40
110 111 7.539022 CGCAGAAATGATGTATCTAGACGTATT 59.461 37.037 0.00 0.00 0.00 1.89
111 112 7.024171 CGCAGAAATGATGTATCTAGACGTAT 58.976 38.462 0.00 0.00 0.00 3.06
112 113 6.204108 TCGCAGAAATGATGTATCTAGACGTA 59.796 38.462 0.00 0.00 0.00 3.57
113 114 5.008712 TCGCAGAAATGATGTATCTAGACGT 59.991 40.000 0.00 0.00 0.00 4.34
114 115 5.340932 GTCGCAGAAATGATGTATCTAGACG 59.659 44.000 0.00 0.00 39.69 4.18
115 116 6.209361 TGTCGCAGAAATGATGTATCTAGAC 58.791 40.000 0.00 0.00 39.69 2.59
116 117 6.391227 TGTCGCAGAAATGATGTATCTAGA 57.609 37.500 0.00 0.00 39.69 2.43
117 118 6.699204 ACTTGTCGCAGAAATGATGTATCTAG 59.301 38.462 0.00 0.00 39.69 2.43
118 119 6.573434 ACTTGTCGCAGAAATGATGTATCTA 58.427 36.000 0.00 0.00 39.69 1.98
119 120 5.423015 ACTTGTCGCAGAAATGATGTATCT 58.577 37.500 0.00 0.00 39.69 1.98
120 121 5.725110 ACTTGTCGCAGAAATGATGTATC 57.275 39.130 0.00 0.00 39.69 2.24
121 122 7.792374 ATTACTTGTCGCAGAAATGATGTAT 57.208 32.000 0.00 0.00 39.69 2.29
122 123 7.201609 GGAATTACTTGTCGCAGAAATGATGTA 60.202 37.037 0.00 0.00 39.69 2.29
123 124 6.403636 GGAATTACTTGTCGCAGAAATGATGT 60.404 38.462 0.00 0.00 39.69 3.06
124 125 5.967674 GGAATTACTTGTCGCAGAAATGATG 59.032 40.000 0.00 0.00 39.69 3.07
125 126 5.220662 CGGAATTACTTGTCGCAGAAATGAT 60.221 40.000 0.00 0.00 39.69 2.45
126 127 4.092821 CGGAATTACTTGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
127 128 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
128 129 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
129 130 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
130 131 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
131 132 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
132 133 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
133 134 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
134 135 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
135 136 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
136 137 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
137 138 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
138 139 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
139 140 2.181975 TCCCTCCGTTCGGAATTACTT 58.818 47.619 14.79 0.00 33.41 2.24
140 141 1.856629 TCCCTCCGTTCGGAATTACT 58.143 50.000 14.79 0.00 33.41 2.24
141 142 2.904697 ATCCCTCCGTTCGGAATTAC 57.095 50.000 14.79 0.00 33.41 1.89
142 143 3.962718 ACTAATCCCTCCGTTCGGAATTA 59.037 43.478 14.79 13.68 33.41 1.40
143 144 2.770232 ACTAATCCCTCCGTTCGGAATT 59.230 45.455 14.79 13.32 33.41 2.17
144 145 2.395619 ACTAATCCCTCCGTTCGGAAT 58.604 47.619 14.79 3.52 33.41 3.01
145 146 1.856629 ACTAATCCCTCCGTTCGGAA 58.143 50.000 14.79 1.17 33.41 4.30
146 147 1.856629 AACTAATCCCTCCGTTCGGA 58.143 50.000 13.34 13.34 0.00 4.55
147 148 3.806625 TTAACTAATCCCTCCGTTCGG 57.193 47.619 4.74 4.74 0.00 4.30
148 149 4.690122 ACATTAACTAATCCCTCCGTTCG 58.310 43.478 0.00 0.00 0.00 3.95
149 150 5.878669 ACAACATTAACTAATCCCTCCGTTC 59.121 40.000 0.00 0.00 0.00 3.95
150 151 5.812286 ACAACATTAACTAATCCCTCCGTT 58.188 37.500 0.00 0.00 0.00 4.44
151 152 5.046159 TGACAACATTAACTAATCCCTCCGT 60.046 40.000 0.00 0.00 0.00 4.69
152 153 5.424757 TGACAACATTAACTAATCCCTCCG 58.575 41.667 0.00 0.00 0.00 4.63
153 154 7.362660 GGTTTGACAACATTAACTAATCCCTCC 60.363 40.741 0.00 0.00 34.15 4.30
154 155 7.175990 TGGTTTGACAACATTAACTAATCCCTC 59.824 37.037 0.00 0.00 34.15 4.30
155 156 7.007723 TGGTTTGACAACATTAACTAATCCCT 58.992 34.615 0.00 0.00 34.15 4.20
156 157 7.222000 TGGTTTGACAACATTAACTAATCCC 57.778 36.000 0.00 0.00 34.15 3.85
157 158 9.353999 GAATGGTTTGACAACATTAACTAATCC 57.646 33.333 4.50 0.00 34.15 3.01
198 204 6.144402 CACCTAGTTGCAAAATGCTTACTTTG 59.856 38.462 0.00 9.03 45.31 2.77
238 244 6.318900 GGAAATACTAGTATTTGCTGCAACCT 59.681 38.462 34.70 16.67 44.89 3.50
290 296 8.993121 CACTGGGTGCAGTTATTATTAATAGAG 58.007 37.037 0.00 0.00 32.26 2.43
302 308 0.882927 GCGTTCACTGGGTGCAGTTA 60.883 55.000 0.00 0.00 32.98 2.24
303 309 2.186826 GCGTTCACTGGGTGCAGTT 61.187 57.895 0.00 0.00 32.98 3.16
304 310 2.591715 GCGTTCACTGGGTGCAGT 60.592 61.111 0.00 0.00 32.98 4.40
313 319 1.447317 CCACAGCCAAAGCGTTCACT 61.447 55.000 0.00 0.00 46.67 3.41
320 326 0.869730 CATTTTGCCACAGCCAAAGC 59.130 50.000 0.00 0.00 37.09 3.51
322 328 3.488778 AATCATTTTGCCACAGCCAAA 57.511 38.095 0.00 0.00 37.94 3.28
324 330 2.289569 GGAAATCATTTTGCCACAGCCA 60.290 45.455 0.00 0.00 38.69 4.75
346 352 3.317993 TGCTTGGGCAAGAAAGAAAGTAC 59.682 43.478 0.00 0.00 46.36 2.73
411 417 3.021177 AGGAGCAGAGGGAGTAACTAC 57.979 52.381 0.00 0.00 0.00 2.73
414 420 6.673839 ATATTTAGGAGCAGAGGGAGTAAC 57.326 41.667 0.00 0.00 0.00 2.50
418 424 6.723977 AGACTTATATTTAGGAGCAGAGGGAG 59.276 42.308 0.00 0.00 0.00 4.30
420 426 6.926630 AGACTTATATTTAGGAGCAGAGGG 57.073 41.667 0.00 0.00 0.00 4.30
421 427 8.646900 AGAAAGACTTATATTTAGGAGCAGAGG 58.353 37.037 0.00 0.00 0.00 3.69
439 445 9.569122 GTCTATAGTGGAATCTCTAGAAAGACT 57.431 37.037 0.00 0.00 32.21 3.24
440 446 9.569122 AGTCTATAGTGGAATCTCTAGAAAGAC 57.431 37.037 0.00 0.00 33.37 3.01
447 453 9.872721 CGTATGTAGTCTATAGTGGAATCTCTA 57.127 37.037 0.00 0.00 0.00 2.43
449 455 7.823310 TCCGTATGTAGTCTATAGTGGAATCTC 59.177 40.741 0.00 0.00 0.00 2.75
450 456 7.687388 TCCGTATGTAGTCTATAGTGGAATCT 58.313 38.462 0.00 0.00 0.00 2.40
451 457 7.414319 GCTCCGTATGTAGTCTATAGTGGAATC 60.414 44.444 0.00 0.00 0.00 2.52
452 458 6.374894 GCTCCGTATGTAGTCTATAGTGGAAT 59.625 42.308 0.00 0.00 0.00 3.01
453 459 5.704515 GCTCCGTATGTAGTCTATAGTGGAA 59.295 44.000 0.00 0.00 0.00 3.53
454 460 5.221783 TGCTCCGTATGTAGTCTATAGTGGA 60.222 44.000 0.00 0.00 0.00 4.02
455 461 5.001874 TGCTCCGTATGTAGTCTATAGTGG 58.998 45.833 0.00 0.00 0.00 4.00
456 462 6.555812 TTGCTCCGTATGTAGTCTATAGTG 57.444 41.667 0.00 0.00 0.00 2.74
457 463 7.578310 TTTTGCTCCGTATGTAGTCTATAGT 57.422 36.000 0.00 0.00 0.00 2.12
460 466 8.639761 ACTTATTTTGCTCCGTATGTAGTCTAT 58.360 33.333 0.00 0.00 0.00 1.98
461 467 7.919091 CACTTATTTTGCTCCGTATGTAGTCTA 59.081 37.037 0.00 0.00 0.00 2.59
462 468 6.757010 CACTTATTTTGCTCCGTATGTAGTCT 59.243 38.462 0.00 0.00 0.00 3.24
463 469 6.755141 TCACTTATTTTGCTCCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
464 470 6.636705 TCACTTATTTTGCTCCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
465 471 7.534085 TTCACTTATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
466 472 8.500753 AATTCACTTATTTTGCTCCGTATGTA 57.499 30.769 0.00 0.00 0.00 2.29
467 473 7.391148 AATTCACTTATTTTGCTCCGTATGT 57.609 32.000 0.00 0.00 0.00 2.29
468 474 8.687824 AAAATTCACTTATTTTGCTCCGTATG 57.312 30.769 0.00 0.00 36.60 2.39
470 476 9.615295 GTAAAAATTCACTTATTTTGCTCCGTA 57.385 29.630 0.00 0.00 37.67 4.02
471 477 8.357402 AGTAAAAATTCACTTATTTTGCTCCGT 58.643 29.630 0.00 0.00 37.67 4.69
472 478 8.742554 AGTAAAAATTCACTTATTTTGCTCCG 57.257 30.769 0.00 0.00 37.67 4.63
484 490 9.543783 AGACGTCTTTTAGAGTAAAAATTCACT 57.456 29.630 13.58 0.00 37.22 3.41
503 509 9.727859 ACTACATTCAGATGTATATAGACGTCT 57.272 33.333 23.66 23.66 45.20 4.18
512 518 9.642343 ACTCCACTAACTACATTCAGATGTATA 57.358 33.333 0.23 0.00 45.20 1.47
513 519 8.540507 ACTCCACTAACTACATTCAGATGTAT 57.459 34.615 0.23 0.00 45.20 2.29
514 520 7.834681 AGACTCCACTAACTACATTCAGATGTA 59.165 37.037 0.00 0.00 44.51 2.29
516 522 7.068103 AGAGACTCCACTAACTACATTCAGATG 59.932 40.741 0.00 0.00 39.25 2.90
517 523 7.122715 AGAGACTCCACTAACTACATTCAGAT 58.877 38.462 0.00 0.00 0.00 2.90
518 524 6.486056 AGAGACTCCACTAACTACATTCAGA 58.514 40.000 0.00 0.00 0.00 3.27
519 525 6.767524 AGAGACTCCACTAACTACATTCAG 57.232 41.667 0.00 0.00 0.00 3.02
520 526 8.645814 TTTAGAGACTCCACTAACTACATTCA 57.354 34.615 0.00 0.00 0.00 2.57
521 527 9.575783 CTTTTAGAGACTCCACTAACTACATTC 57.424 37.037 0.00 0.00 0.00 2.67
522 528 8.532819 CCTTTTAGAGACTCCACTAACTACATT 58.467 37.037 0.00 0.00 0.00 2.71
523 529 7.894364 TCCTTTTAGAGACTCCACTAACTACAT 59.106 37.037 0.00 0.00 0.00 2.29
524 530 7.176340 GTCCTTTTAGAGACTCCACTAACTACA 59.824 40.741 0.00 0.00 0.00 2.74
525 531 7.394077 AGTCCTTTTAGAGACTCCACTAACTAC 59.606 40.741 0.00 0.00 39.08 2.73
526 532 7.468496 AGTCCTTTTAGAGACTCCACTAACTA 58.532 38.462 0.00 0.00 39.08 2.24
527 533 6.316513 AGTCCTTTTAGAGACTCCACTAACT 58.683 40.000 0.00 0.00 39.08 2.24
528 534 6.593268 AGTCCTTTTAGAGACTCCACTAAC 57.407 41.667 0.00 0.00 39.08 2.34
529 535 8.896722 ATAAGTCCTTTTAGAGACTCCACTAA 57.103 34.615 0.00 0.00 42.48 2.24
531 537 9.495382 AATATAAGTCCTTTTAGAGACTCCACT 57.505 33.333 0.00 0.00 42.48 4.00
543 549 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
544 550 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
545 551 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
546 552 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
547 553 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
548 554 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
549 555 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
550 556 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
551 557 6.183361 CCAACTCCCTCCGTTCCTAAATATAA 60.183 42.308 0.00 0.00 0.00 0.98
552 558 5.306160 CCAACTCCCTCCGTTCCTAAATATA 59.694 44.000 0.00 0.00 0.00 0.86
553 559 4.102681 CCAACTCCCTCCGTTCCTAAATAT 59.897 45.833 0.00 0.00 0.00 1.28
554 560 3.453353 CCAACTCCCTCCGTTCCTAAATA 59.547 47.826 0.00 0.00 0.00 1.40
555 561 2.238898 CCAACTCCCTCCGTTCCTAAAT 59.761 50.000 0.00 0.00 0.00 1.40
556 562 1.626825 CCAACTCCCTCCGTTCCTAAA 59.373 52.381 0.00 0.00 0.00 1.85
557 563 1.272807 CCAACTCCCTCCGTTCCTAA 58.727 55.000 0.00 0.00 0.00 2.69
558 564 0.115745 ACCAACTCCCTCCGTTCCTA 59.884 55.000 0.00 0.00 0.00 2.94
559 565 1.152096 ACCAACTCCCTCCGTTCCT 60.152 57.895 0.00 0.00 0.00 3.36
560 566 1.003718 CACCAACTCCCTCCGTTCC 60.004 63.158 0.00 0.00 0.00 3.62
561 567 1.671379 GCACCAACTCCCTCCGTTC 60.671 63.158 0.00 0.00 0.00 3.95
562 568 1.990160 TTGCACCAACTCCCTCCGTT 61.990 55.000 0.00 0.00 0.00 4.44
563 569 1.779061 ATTGCACCAACTCCCTCCGT 61.779 55.000 0.00 0.00 0.00 4.69
564 570 0.609131 AATTGCACCAACTCCCTCCG 60.609 55.000 0.00 0.00 0.00 4.63
565 571 0.890683 CAATTGCACCAACTCCCTCC 59.109 55.000 0.00 0.00 0.00 4.30
566 572 0.244721 GCAATTGCACCAACTCCCTC 59.755 55.000 25.36 0.00 41.59 4.30
567 573 0.178953 AGCAATTGCACCAACTCCCT 60.179 50.000 30.89 4.40 45.16 4.20
568 574 0.681175 AAGCAATTGCACCAACTCCC 59.319 50.000 30.89 0.00 45.16 4.30
569 575 1.787012 CAAGCAATTGCACCAACTCC 58.213 50.000 30.89 0.00 45.16 3.85
570 576 1.142474 GCAAGCAATTGCACCAACTC 58.858 50.000 30.89 9.62 46.60 3.01
571 577 3.294079 GCAAGCAATTGCACCAACT 57.706 47.368 30.89 7.52 46.60 3.16
583 589 1.401800 CGTGCTGAATTGATGCAAGCA 60.402 47.619 2.92 2.92 38.50 3.91
584 590 1.265568 CGTGCTGAATTGATGCAAGC 58.734 50.000 0.00 0.00 38.50 4.01
585 591 2.247637 CACGTGCTGAATTGATGCAAG 58.752 47.619 0.82 0.00 40.82 4.01
586 592 1.068402 CCACGTGCTGAATTGATGCAA 60.068 47.619 10.91 0.00 38.50 4.08
587 593 0.522626 CCACGTGCTGAATTGATGCA 59.477 50.000 10.91 0.00 0.00 3.96
588 594 0.179156 CCCACGTGCTGAATTGATGC 60.179 55.000 10.91 0.00 0.00 3.91
589 595 1.131126 GACCCACGTGCTGAATTGATG 59.869 52.381 10.91 0.00 0.00 3.07
590 596 1.003580 AGACCCACGTGCTGAATTGAT 59.996 47.619 10.91 0.00 0.00 2.57
591 597 0.396435 AGACCCACGTGCTGAATTGA 59.604 50.000 10.91 0.00 0.00 2.57
592 598 1.197721 GAAGACCCACGTGCTGAATTG 59.802 52.381 10.91 0.00 0.00 2.32
593 599 1.072331 AGAAGACCCACGTGCTGAATT 59.928 47.619 10.91 0.24 0.00 2.17
671 682 4.506886 AAGTAGCAGAGCGTGGATATAC 57.493 45.455 0.00 0.00 0.00 1.47
672 683 5.944007 TCATAAGTAGCAGAGCGTGGATATA 59.056 40.000 0.00 0.00 0.00 0.86
673 684 4.767409 TCATAAGTAGCAGAGCGTGGATAT 59.233 41.667 0.00 0.00 0.00 1.63
680 691 3.055591 CACCATCATAAGTAGCAGAGCG 58.944 50.000 0.00 0.00 0.00 5.03
700 726 8.465999 CAGGCCACATCATTAAATTAAACTACA 58.534 33.333 5.01 0.00 0.00 2.74
807 857 2.727544 CGCCCAAACCTTGTGTGG 59.272 61.111 0.00 0.00 40.45 4.17
822 872 4.355543 TTTGAGCATTTTCTGTATCCGC 57.644 40.909 0.00 0.00 0.00 5.54
844 895 9.914131 CTCATTACGGAGAATATACTGATGAAA 57.086 33.333 0.00 0.00 37.05 2.69
861 922 1.269166 GCGACAGACACTCATTACGG 58.731 55.000 0.00 0.00 0.00 4.02
892 953 3.125658 CAGAACAATGCATGTCACGATGA 59.874 43.478 0.00 0.00 42.99 2.92
897 962 8.091385 TGATATATCAGAACAATGCATGTCAC 57.909 34.615 11.49 0.00 35.12 3.67
1102 1190 2.580783 CACCCCTTTGATTCCCCTCTAA 59.419 50.000 0.00 0.00 0.00 2.10
1152 1242 8.315906 ACAATGATGTCAATGCTTCTGTAGCG 62.316 42.308 1.81 0.00 44.45 4.26
1284 1374 1.079503 GGTCAATCAGCGAGGAACAC 58.920 55.000 0.00 0.00 0.00 3.32
1774 1868 2.404559 ACACTTCCCTAGGACAACACA 58.595 47.619 11.48 0.00 0.00 3.72
1833 1927 7.393841 TGCAATCATGTCATTGTCATTTAGA 57.606 32.000 8.45 0.00 36.32 2.10
1923 2017 2.093783 GGTTTCACAATAGCCGTCTTCG 59.906 50.000 0.00 0.00 0.00 3.79
2001 2095 3.951775 AATCGGAGGTCTATGATCTGC 57.048 47.619 0.00 0.00 0.00 4.26
2090 2184 0.893727 AACACGAATTGGGCAGGACC 60.894 55.000 0.00 0.00 37.93 4.46
2176 2270 5.127194 ACAATATAAGCTCGAGTGTCTCCAA 59.873 40.000 15.13 0.00 0.00 3.53
2238 2332 0.327924 TACTCAAGCATGGGGTGTGG 59.672 55.000 0.00 0.00 0.00 4.17
2303 2398 2.080286 ATGTGCACGTCCTAGTTCAC 57.920 50.000 13.13 0.00 38.44 3.18
2310 2405 3.510360 ACTCTAACTTATGTGCACGTCCT 59.490 43.478 16.44 0.21 0.00 3.85
2421 2516 6.269769 TCAAACCAATTTTCTTCATAAGGGCT 59.730 34.615 0.00 0.00 0.00 5.19
2454 2549 9.927081 AAATTTAGGAGACCACTTCATCAATAT 57.073 29.630 0.00 0.00 0.00 1.28
2512 2611 2.555325 TCCAATGCTGCAGAGTCAAAAG 59.445 45.455 20.43 0.68 0.00 2.27
2521 2620 1.214589 GCCTTGTCCAATGCTGCAG 59.785 57.895 10.11 10.11 0.00 4.41
2526 2625 1.080298 GCACAGCCTTGTCCAATGC 60.080 57.895 0.00 0.00 34.62 3.56
2560 2664 5.060940 GCAACAAAAAGTTCAGACAAGTGAC 59.939 40.000 0.00 0.00 38.74 3.67
2620 2737 5.240403 GCCTTCCAGAATTCATCATTAGACC 59.760 44.000 8.44 0.00 0.00 3.85
2645 2764 7.452880 ACTATTAAAGTTTCATTCAGCAGCA 57.547 32.000 0.00 0.00 33.35 4.41
2650 2769 8.398665 GGTGCCTACTATTAAAGTTTCATTCAG 58.601 37.037 0.00 0.00 39.80 3.02
2724 2856 2.739913 CGGTTTCGAAATGGCTACAGAA 59.260 45.455 14.69 0.00 39.00 3.02
2767 2902 0.249447 GTGCCTCCACAGCAAAAACC 60.249 55.000 0.00 0.00 43.02 3.27
2835 4333 5.573337 ATCACTTCTGCAATAAAAGAGGC 57.427 39.130 5.19 0.00 0.00 4.70
2839 4339 9.467258 TCTTCAAAATCACTTCTGCAATAAAAG 57.533 29.630 0.00 0.00 0.00 2.27
2969 4486 6.312399 AGTCGATATCAACAAAACAAGCAA 57.688 33.333 3.12 0.00 0.00 3.91
3005 4524 9.635520 CACTATTCTTTTGAGAAGCAATGAAAT 57.364 29.630 0.00 0.00 36.15 2.17
3147 4802 9.985730 TCAAGGACTCTAAAAACGTCTTATAAA 57.014 29.630 0.00 0.00 0.00 1.40
3148 4803 9.415544 GTCAAGGACTCTAAAAACGTCTTATAA 57.584 33.333 0.00 0.00 0.00 0.98
3149 4804 8.579006 TGTCAAGGACTCTAAAAACGTCTTATA 58.421 33.333 0.00 0.00 33.15 0.98
3253 4929 5.522460 GCCCTCAAAAAGGTAAGAACAAAAC 59.478 40.000 0.00 0.00 44.56 2.43
3293 4969 9.982651 GCTATTTTCATACACTCTTGATAGGTA 57.017 33.333 0.00 0.00 0.00 3.08
3339 5023 9.298250 CAAATGAATCTCAATATCTCATCCCTT 57.702 33.333 0.00 0.00 0.00 3.95
3396 5080 1.196127 GAACCCTTTGAGCGGTTTACG 59.804 52.381 0.00 0.00 42.48 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.