Multiple sequence alignment - TraesCS6B01G124300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G124300 chr6B 100.000 4094 0 0 1 4094 119137669 119133576 0.000000e+00 7561.0
1 TraesCS6B01G124300 chr6B 89.313 131 12 2 3362 3492 617675282 617675154 3.270000e-36 163.0
2 TraesCS6B01G124300 chr6B 90.833 120 10 1 3362 3481 292359 292241 4.240000e-35 159.0
3 TraesCS6B01G124300 chr6D 92.446 2383 132 26 1018 3365 52347985 52345616 0.000000e+00 3360.0
4 TraesCS6B01G124300 chr6D 89.293 495 42 3 3 487 52348539 52348046 9.730000e-171 610.0
5 TraesCS6B01G124300 chr6D 93.086 405 23 2 3691 4094 52345497 52345097 4.560000e-164 588.0
6 TraesCS6B01G124300 chr6D 84.061 527 65 12 3 512 163352108 163351584 1.320000e-134 490.0
7 TraesCS6B01G124300 chr6D 96.721 122 3 1 3479 3599 52345619 52345498 6.940000e-48 202.0
8 TraesCS6B01G124300 chr6A 91.445 2478 109 37 947 3365 63173011 63170578 0.000000e+00 3306.0
9 TraesCS6B01G124300 chr6A 89.814 913 83 6 1 904 63173921 63173010 0.000000e+00 1162.0
10 TraesCS6B01G124300 chr6A 85.953 897 94 18 3 872 223568844 223567953 0.000000e+00 929.0
11 TraesCS6B01G124300 chr6A 87.288 236 17 5 3657 3891 63170487 63170264 1.460000e-64 257.0
12 TraesCS6B01G124300 chr6A 92.398 171 13 0 3924 4094 63170272 63170102 1.140000e-60 244.0
13 TraesCS6B01G124300 chr6A 94.792 96 5 0 3479 3574 63170581 63170486 2.550000e-32 150.0
14 TraesCS6B01G124300 chr6A 93.878 49 3 0 3604 3652 608405196 608405244 1.580000e-09 75.0
15 TraesCS6B01G124300 chr3D 82.774 894 122 19 3 870 431224941 431225828 0.000000e+00 769.0
16 TraesCS6B01G124300 chr2B 82.851 898 115 21 1 870 417251571 417250685 0.000000e+00 769.0
17 TraesCS6B01G124300 chr2B 95.833 48 2 0 3606 3653 763944065 763944018 1.220000e-10 78.7
18 TraesCS6B01G124300 chr2A 84.778 519 69 6 3 512 468595654 468595137 2.820000e-141 512.0
19 TraesCS6B01G124300 chr2A 89.256 121 12 1 3361 3481 469894929 469895048 2.550000e-32 150.0
20 TraesCS6B01G124300 chr2D 87.374 396 48 2 9 402 351064409 351064014 1.740000e-123 453.0
21 TraesCS6B01G124300 chr2D 87.402 127 12 4 3339 3465 9384757 9384879 4.270000e-30 143.0
22 TraesCS6B01G124300 chr1A 85.321 327 33 8 556 870 488195666 488195343 1.420000e-84 324.0
23 TraesCS6B01G124300 chr1A 92.308 52 3 1 3601 3652 576281341 576281391 5.680000e-09 73.1
24 TraesCS6B01G124300 chr7D 92.126 127 7 3 3354 3480 57073337 57073214 4.210000e-40 176.0
25 TraesCS6B01G124300 chr7D 91.129 124 10 1 3359 3482 452449764 452449642 2.530000e-37 167.0
26 TraesCS6B01G124300 chrUn 87.402 127 14 2 3359 3485 334911825 334911949 1.190000e-30 145.0
27 TraesCS6B01G124300 chr5B 91.509 106 8 1 3361 3466 553360431 553360535 1.190000e-30 145.0
28 TraesCS6B01G124300 chr1B 86.822 129 16 1 3359 3487 592364794 592364921 4.270000e-30 143.0
29 TraesCS6B01G124300 chr7A 94.231 52 2 1 3602 3653 497113351 497113401 1.220000e-10 78.7
30 TraesCS6B01G124300 chr4D 95.833 48 1 1 3601 3648 64613255 64613209 4.390000e-10 76.8
31 TraesCS6B01G124300 chr4A 95.833 48 1 1 3601 3648 531315921 531315967 4.390000e-10 76.8
32 TraesCS6B01G124300 chr3B 95.652 46 2 0 3607 3652 597475669 597475714 1.580000e-09 75.0
33 TraesCS6B01G124300 chr1D 95.652 46 2 0 3608 3653 488481896 488481851 1.580000e-09 75.0
34 TraesCS6B01G124300 chr5D 93.878 49 2 1 3607 3655 373170115 373170068 5.680000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G124300 chr6B 119133576 119137669 4093 True 7561.0 7561 100.0000 1 4094 1 chr6B.!!$R2 4093
1 TraesCS6B01G124300 chr6D 52345097 52348539 3442 True 1190.0 3360 92.8865 3 4094 4 chr6D.!!$R2 4091
2 TraesCS6B01G124300 chr6D 163351584 163352108 524 True 490.0 490 84.0610 3 512 1 chr6D.!!$R1 509
3 TraesCS6B01G124300 chr6A 63170102 63173921 3819 True 1023.8 3306 91.1474 1 4094 5 chr6A.!!$R2 4093
4 TraesCS6B01G124300 chr6A 223567953 223568844 891 True 929.0 929 85.9530 3 872 1 chr6A.!!$R1 869
5 TraesCS6B01G124300 chr3D 431224941 431225828 887 False 769.0 769 82.7740 3 870 1 chr3D.!!$F1 867
6 TraesCS6B01G124300 chr2B 417250685 417251571 886 True 769.0 769 82.8510 1 870 1 chr2B.!!$R1 869
7 TraesCS6B01G124300 chr2A 468595137 468595654 517 True 512.0 512 84.7780 3 512 1 chr2A.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 994 0.107654 GCCCATGTAGGAAAGCGAGT 60.108 55.0 0.00 0.0 41.22 4.18 F
994 1043 0.532573 GTCCAATCGAGAGACCAGCA 59.467 55.0 0.00 0.0 46.97 4.41 F
2778 2886 0.036388 TCCTTGGCAAGATCACCGTC 60.036 55.0 28.18 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2064 0.033642 GATTAGGCGCTAGACACCCC 59.966 60.0 7.64 0.0 0.00 4.95 R
2974 3082 0.981183 TAGGAACCGGCTGTCACAAT 59.019 50.0 0.00 0.0 0.00 2.71 R
4021 4150 0.250467 AGTGGCAGACGCAAGAATGT 60.250 50.0 0.00 0.0 41.24 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 7.519008 CGAACTAAATCTAGTTGATGCAATCCC 60.519 40.741 0.00 0.00 46.31 3.85
198 201 0.973632 TCGGTGGTGCATGAACTACT 59.026 50.000 18.88 0.00 32.54 2.57
248 253 2.948979 TGGTATATTTGGCGGCAAAGAG 59.051 45.455 35.46 0.00 0.00 2.85
271 276 2.310538 CAAGGAGCAAAAGGTGGAACT 58.689 47.619 0.00 0.00 36.74 3.01
298 306 6.980978 TCCAAAACTAAGAGAGAATAGCGATG 59.019 38.462 0.00 0.00 0.00 3.84
356 371 5.900123 AGCTATACACTGAACCAACCTATCT 59.100 40.000 0.00 0.00 0.00 1.98
364 379 5.946377 ACTGAACCAACCTATCTGAAAATCC 59.054 40.000 0.00 0.00 0.00 3.01
373 388 5.070446 ACCTATCTGAAAATCCGAGCATGTA 59.930 40.000 0.00 0.00 0.00 2.29
458 482 2.819608 GGTATGTGTTGTTGTGGCTCAT 59.180 45.455 0.00 0.00 0.00 2.90
501 525 0.255890 AGCGGCAACATGGACCTTAT 59.744 50.000 1.45 0.00 0.00 1.73
516 541 8.588472 CATGGACCTTATCTCATGTATCAACTA 58.412 37.037 0.00 0.00 34.12 2.24
524 549 6.656632 TCTCATGTATCAACTATGGACTCC 57.343 41.667 0.00 0.00 0.00 3.85
691 725 2.808906 TGCTACTCTCCTAGCACTGA 57.191 50.000 0.00 0.00 43.43 3.41
692 726 2.649190 TGCTACTCTCCTAGCACTGAG 58.351 52.381 0.00 0.00 43.43 3.35
705 739 2.481952 AGCACTGAGATTTTCAAGCGTC 59.518 45.455 0.00 0.00 40.15 5.19
728 770 6.374333 GTCTCATTGTTGTAGGGAAGCAAATA 59.626 38.462 0.00 0.00 0.00 1.40
760 806 7.377766 TGATAGTCTAGCAAACCATTGTTTC 57.622 36.000 0.00 0.00 42.73 2.78
775 821 6.599638 ACCATTGTTTCAGAGTTAGCTTATCC 59.400 38.462 0.00 0.00 0.00 2.59
785 831 4.279145 AGTTAGCTTATCCGAGTCTTGGA 58.721 43.478 11.49 11.49 40.46 3.53
797 843 2.829120 GAGTCTTGGAACTCTAGTGCCT 59.171 50.000 8.63 0.00 44.46 4.75
802 848 1.183549 GGAACTCTAGTGCCTCCGAA 58.816 55.000 0.00 0.00 40.76 4.30
851 898 4.799564 TGGCCATTGTTTGAGGAATAAC 57.200 40.909 0.00 0.00 0.00 1.89
919 966 3.137484 TGTCACGACATTAGGCAGC 57.863 52.632 0.00 0.00 36.21 5.25
920 967 0.391130 TGTCACGACATTAGGCAGCC 60.391 55.000 1.84 1.84 36.21 4.85
921 968 1.090052 GTCACGACATTAGGCAGCCC 61.090 60.000 8.22 0.00 0.00 5.19
922 969 2.173669 CACGACATTAGGCAGCCCG 61.174 63.158 8.22 5.83 35.76 6.13
923 970 2.186903 CGACATTAGGCAGCCCGT 59.813 61.111 8.22 0.00 35.76 5.28
924 971 1.883084 CGACATTAGGCAGCCCGTC 60.883 63.158 8.22 9.22 35.76 4.79
925 972 1.523938 GACATTAGGCAGCCCGTCC 60.524 63.158 8.22 0.00 35.76 4.79
926 973 2.203209 CATTAGGCAGCCCGTCCC 60.203 66.667 8.22 0.00 35.76 4.46
927 974 3.861797 ATTAGGCAGCCCGTCCCG 61.862 66.667 8.22 0.00 35.76 5.14
937 984 4.235762 CCGTCCCGGCCCATGTAG 62.236 72.222 0.00 0.00 41.17 2.74
938 985 4.235762 CGTCCCGGCCCATGTAGG 62.236 72.222 0.00 0.00 37.03 3.18
939 986 2.766651 GTCCCGGCCCATGTAGGA 60.767 66.667 0.00 0.00 41.22 2.94
940 987 2.041430 TCCCGGCCCATGTAGGAA 59.959 61.111 0.00 0.00 41.22 3.36
941 988 1.616930 TCCCGGCCCATGTAGGAAA 60.617 57.895 0.00 0.00 41.22 3.13
942 989 1.152963 CCCGGCCCATGTAGGAAAG 60.153 63.158 0.00 0.00 41.22 2.62
943 990 1.823899 CCGGCCCATGTAGGAAAGC 60.824 63.158 0.00 0.00 41.22 3.51
944 991 2.180204 CGGCCCATGTAGGAAAGCG 61.180 63.158 0.00 0.00 41.22 4.68
945 992 1.223487 GGCCCATGTAGGAAAGCGA 59.777 57.895 0.00 0.00 41.22 4.93
946 993 0.815615 GGCCCATGTAGGAAAGCGAG 60.816 60.000 0.00 0.00 41.22 5.03
947 994 0.107654 GCCCATGTAGGAAAGCGAGT 60.108 55.000 0.00 0.00 41.22 4.18
987 1036 2.478709 CGAGTCCAAGTCCAATCGAGAG 60.479 54.545 0.00 0.00 32.13 3.20
989 1038 2.494073 AGTCCAAGTCCAATCGAGAGAC 59.506 50.000 4.54 4.54 46.97 3.36
990 1039 1.825474 TCCAAGTCCAATCGAGAGACC 59.175 52.381 8.24 0.00 46.97 3.85
991 1040 1.550524 CCAAGTCCAATCGAGAGACCA 59.449 52.381 8.24 0.00 46.97 4.02
992 1041 2.417924 CCAAGTCCAATCGAGAGACCAG 60.418 54.545 8.24 2.91 46.97 4.00
994 1043 0.532573 GTCCAATCGAGAGACCAGCA 59.467 55.000 0.00 0.00 46.97 4.41
995 1044 0.532573 TCCAATCGAGAGACCAGCAC 59.467 55.000 0.00 0.00 46.97 4.40
996 1045 0.534412 CCAATCGAGAGACCAGCACT 59.466 55.000 0.00 0.00 46.97 4.40
997 1046 1.066573 CCAATCGAGAGACCAGCACTT 60.067 52.381 0.00 0.00 46.97 3.16
998 1047 1.998315 CAATCGAGAGACCAGCACTTG 59.002 52.381 0.00 0.00 46.97 3.16
999 1048 1.550327 ATCGAGAGACCAGCACTTGA 58.450 50.000 0.00 0.00 46.97 3.02
1000 1049 1.328279 TCGAGAGACCAGCACTTGAA 58.672 50.000 0.00 0.00 33.31 2.69
1041 1090 0.881796 TCGACTCGTGCTTCAGACAT 59.118 50.000 0.00 0.00 0.00 3.06
1069 1125 7.386978 GCTTTGTCTCAAAAAGAAAAGCTAG 57.613 36.000 17.59 0.00 44.30 3.42
1106 1162 2.440253 GGAGAGCTAGACTGGTCCTAGA 59.560 54.545 0.00 0.00 36.58 2.43
1227 1286 4.560856 CGGGCGAAGAGGAGAGCG 62.561 72.222 0.00 0.00 0.00 5.03
1257 1316 1.635487 TGGGGGAAAGAGAAGGTCATG 59.365 52.381 0.00 0.00 0.00 3.07
1264 1323 1.270907 AGAGAAGGTCATGGCGAAGT 58.729 50.000 0.00 0.00 0.00 3.01
1331 1390 4.446371 CTCAAAAGCTCCGAGTATCCAAT 58.554 43.478 0.00 0.00 0.00 3.16
1337 1396 0.742505 TCCGAGTATCCAATTCGCGT 59.257 50.000 5.77 0.00 33.25 6.01
1361 1420 2.942641 GGAAAAGTCCGTCCCCTTG 58.057 57.895 0.00 0.00 33.05 3.61
1625 1687 0.817229 TGATGCCAAGCGTGTGTTCA 60.817 50.000 0.00 0.00 0.00 3.18
1636 1698 1.779569 GTGTGTTCATCTTCCGTCGT 58.220 50.000 0.00 0.00 0.00 4.34
1718 1780 7.199078 GTGAGGGAAATTGAAGATAAAGATGC 58.801 38.462 0.00 0.00 0.00 3.91
1737 1799 7.707624 AGATGCCAACTTTCTGAATAATTGA 57.292 32.000 9.21 0.00 0.00 2.57
1750 1812 6.939730 TCTGAATAATTGACCAGCAAAGTACA 59.060 34.615 0.00 0.00 40.48 2.90
1752 1814 7.946207 TGAATAATTGACCAGCAAAGTACAAA 58.054 30.769 0.00 0.00 40.48 2.83
1753 1815 8.584157 TGAATAATTGACCAGCAAAGTACAAAT 58.416 29.630 0.00 0.00 40.48 2.32
1754 1816 9.423061 GAATAATTGACCAGCAAAGTACAAATT 57.577 29.630 0.00 0.00 40.48 1.82
1755 1817 9.777297 AATAATTGACCAGCAAAGTACAAATTT 57.223 25.926 0.00 0.00 40.48 1.82
1757 1819 8.816640 AATTGACCAGCAAAGTACAAATTTAG 57.183 30.769 0.00 0.00 40.48 1.85
1800 1862 4.345257 ACCAGCGTCAGTTAATATGGATCT 59.655 41.667 0.00 0.00 0.00 2.75
1847 1909 2.905959 TTCAGCATTCATCACTTGCG 57.094 45.000 0.00 0.00 41.22 4.85
1875 1937 9.450807 TTTTTCTCACAGAATCTTTCGATTTTC 57.549 29.630 0.00 0.00 39.89 2.29
1876 1938 7.969536 TTCTCACAGAATCTTTCGATTTTCT 57.030 32.000 0.00 0.00 39.89 2.52
1884 1952 9.398170 CAGAATCTTTCGATTTTCTTTTAAGCA 57.602 29.630 0.00 0.00 39.89 3.91
1956 2024 3.631046 GGAGCCCTATCGCCCAGG 61.631 72.222 0.00 0.00 0.00 4.45
2024 2119 0.618458 AGCGCCTAATCCAACCTTGA 59.382 50.000 2.29 0.00 0.00 3.02
2110 2212 4.996976 CTGCTCAAGCGGTAGTGT 57.003 55.556 2.53 0.00 45.83 3.55
2122 2224 2.715268 CGGTAGTGTTGTTTGCTTGTG 58.285 47.619 0.00 0.00 0.00 3.33
2183 2288 2.215942 ACATCAAGTAAACCAGGGCC 57.784 50.000 0.00 0.00 0.00 5.80
2266 2371 9.968743 CTATTTTCCTTACGAATTGTACTTGTC 57.031 33.333 0.00 0.00 31.20 3.18
2280 2385 5.321927 TGTACTTGTCACTCAGTGGATAGA 58.678 41.667 4.57 0.00 33.87 1.98
2348 2453 7.377766 TGTGGCAAGTTCATTCTTATAGTTC 57.622 36.000 0.00 0.00 0.00 3.01
2465 2573 2.290641 GAGGAATCGTTTTGCACAGTGT 59.709 45.455 1.61 0.00 0.00 3.55
2506 2614 7.106239 TGACTTGAAGATTAGGAGTTTGGATC 58.894 38.462 0.00 0.00 0.00 3.36
2514 2622 5.843019 TTAGGAGTTTGGATCCAGAAAGT 57.157 39.130 15.53 10.37 39.47 2.66
2518 2626 3.403038 AGTTTGGATCCAGAAAGTGACG 58.597 45.455 15.53 0.00 0.00 4.35
2700 2808 2.483877 GGCAAGCATAAAAAGGCCAAAC 59.516 45.455 5.01 0.00 41.02 2.93
2775 2883 2.098117 CGAAATCCTTGGCAAGATCACC 59.902 50.000 28.18 12.64 0.00 4.02
2778 2886 0.036388 TCCTTGGCAAGATCACCGTC 60.036 55.000 28.18 0.00 0.00 4.79
2828 2936 4.021544 CCTCCTCTATGATGGCAGTAGTTC 60.022 50.000 0.00 0.00 0.00 3.01
2910 3018 7.071196 TGGCTTCCTCTATATATCAACACAGTT 59.929 37.037 0.00 0.00 0.00 3.16
2945 3053 6.370718 GGTAAGAATACTACCACCAGTGTTTG 59.629 42.308 0.00 0.00 30.93 2.93
2974 3082 2.055689 CTGTGGGTGCCAGACCTTCA 62.056 60.000 0.00 0.00 45.33 3.02
2985 3093 1.808945 CAGACCTTCATTGTGACAGCC 59.191 52.381 0.00 0.00 0.00 4.85
3092 3200 3.588336 GCTCTCCAGCCAGCTTTG 58.412 61.111 0.00 0.00 40.14 2.77
3165 3273 7.836479 ATGTACCCCTAGATTGTACTAGTTC 57.164 40.000 0.00 0.00 38.41 3.01
3170 3278 6.781507 ACCCCTAGATTGTACTAGTTCCATAC 59.218 42.308 0.00 0.00 38.41 2.39
3171 3279 7.011382 CCCCTAGATTGTACTAGTTCCATACT 58.989 42.308 0.00 4.29 38.41 2.12
3172 3280 7.039644 CCCCTAGATTGTACTAGTTCCATACTG 60.040 44.444 0.00 0.00 38.41 2.74
3173 3281 7.506261 CCCTAGATTGTACTAGTTCCATACTGT 59.494 40.741 0.00 0.00 38.41 3.55
3174 3282 9.570468 CCTAGATTGTACTAGTTCCATACTGTA 57.430 37.037 0.00 0.00 38.41 2.74
3264 3389 4.142491 TGTGTTACTTGGTGAGCACAAAAG 60.142 41.667 11.46 11.46 34.49 2.27
3366 3492 8.517062 TGACCTCTACTTACAACTATTACTCC 57.483 38.462 0.00 0.00 0.00 3.85
3367 3493 7.559170 TGACCTCTACTTACAACTATTACTCCC 59.441 40.741 0.00 0.00 0.00 4.30
3369 3495 7.779326 ACCTCTACTTACAACTATTACTCCCTC 59.221 40.741 0.00 0.00 0.00 4.30
3370 3496 7.231115 CCTCTACTTACAACTATTACTCCCTCC 59.769 44.444 0.00 0.00 0.00 4.30
3371 3497 5.848833 ACTTACAACTATTACTCCCTCCG 57.151 43.478 0.00 0.00 0.00 4.63
3372 3498 5.267587 ACTTACAACTATTACTCCCTCCGT 58.732 41.667 0.00 0.00 0.00 4.69
3373 3499 5.359292 ACTTACAACTATTACTCCCTCCGTC 59.641 44.000 0.00 0.00 0.00 4.79
3374 3500 3.029570 ACAACTATTACTCCCTCCGTCC 58.970 50.000 0.00 0.00 0.00 4.79
3375 3501 1.978454 ACTATTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
3376 3502 1.492176 ACTATTACTCCCTCCGTCCGA 59.508 52.381 0.00 0.00 0.00 4.55
3377 3503 2.092212 ACTATTACTCCCTCCGTCCGAA 60.092 50.000 0.00 0.00 0.00 4.30
3378 3504 1.856629 ATTACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3379 3505 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
3380 3506 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
3399 3525 4.590850 AAAAGATTGTCCCAAGCTTGTC 57.409 40.909 24.35 14.08 0.00 3.18
3400 3526 3.515602 AAGATTGTCCCAAGCTTGTCT 57.484 42.857 24.35 16.04 0.00 3.41
3401 3527 3.064900 AGATTGTCCCAAGCTTGTCTC 57.935 47.619 24.35 13.85 0.00 3.36
3402 3528 2.641815 AGATTGTCCCAAGCTTGTCTCT 59.358 45.455 24.35 13.03 0.00 3.10
3403 3529 2.550830 TTGTCCCAAGCTTGTCTCTC 57.449 50.000 24.35 10.65 0.00 3.20
3404 3530 1.423584 TGTCCCAAGCTTGTCTCTCA 58.576 50.000 24.35 12.85 0.00 3.27
3405 3531 1.768275 TGTCCCAAGCTTGTCTCTCAA 59.232 47.619 24.35 1.41 34.61 3.02
3406 3532 2.172505 TGTCCCAAGCTTGTCTCTCAAA 59.827 45.455 24.35 0.00 35.48 2.69
3407 3533 3.181440 TGTCCCAAGCTTGTCTCTCAAAT 60.181 43.478 24.35 0.00 35.48 2.32
3408 3534 3.190118 GTCCCAAGCTTGTCTCTCAAATG 59.810 47.826 24.35 5.47 35.48 2.32
3409 3535 3.072915 TCCCAAGCTTGTCTCTCAAATGA 59.927 43.478 24.35 3.25 35.48 2.57
3410 3536 3.822735 CCCAAGCTTGTCTCTCAAATGAA 59.177 43.478 24.35 0.00 35.48 2.57
3411 3537 4.461781 CCCAAGCTTGTCTCTCAAATGAAT 59.538 41.667 24.35 0.00 35.48 2.57
3412 3538 5.399858 CCAAGCTTGTCTCTCAAATGAATG 58.600 41.667 24.35 0.00 35.48 2.67
3413 3539 5.048224 CCAAGCTTGTCTCTCAAATGAATGT 60.048 40.000 24.35 0.00 35.48 2.71
3414 3540 6.149973 CCAAGCTTGTCTCTCAAATGAATGTA 59.850 38.462 24.35 0.00 35.48 2.29
3415 3541 7.148120 CCAAGCTTGTCTCTCAAATGAATGTAT 60.148 37.037 24.35 0.00 35.48 2.29
3416 3542 7.551035 AGCTTGTCTCTCAAATGAATGTATC 57.449 36.000 0.00 0.00 35.48 2.24
3417 3543 7.337167 AGCTTGTCTCTCAAATGAATGTATCT 58.663 34.615 0.00 0.00 35.48 1.98
3418 3544 8.481314 AGCTTGTCTCTCAAATGAATGTATCTA 58.519 33.333 0.00 0.00 35.48 1.98
3419 3545 8.763356 GCTTGTCTCTCAAATGAATGTATCTAG 58.237 37.037 0.00 0.00 35.48 2.43
3420 3546 8.654230 TTGTCTCTCAAATGAATGTATCTAGC 57.346 34.615 0.00 0.00 32.64 3.42
3421 3547 8.016301 TGTCTCTCAAATGAATGTATCTAGCT 57.984 34.615 0.00 0.00 0.00 3.32
3422 3548 8.140628 TGTCTCTCAAATGAATGTATCTAGCTC 58.859 37.037 0.00 0.00 0.00 4.09
3423 3549 8.359642 GTCTCTCAAATGAATGTATCTAGCTCT 58.640 37.037 0.00 0.00 0.00 4.09
3424 3550 9.579932 TCTCTCAAATGAATGTATCTAGCTCTA 57.420 33.333 0.00 0.00 0.00 2.43
3426 3552 9.973450 TCTCAAATGAATGTATCTAGCTCTAAC 57.027 33.333 0.00 0.00 0.00 2.34
3427 3553 9.979578 CTCAAATGAATGTATCTAGCTCTAACT 57.020 33.333 0.00 0.00 0.00 2.24
3432 3558 9.926158 ATGAATGTATCTAGCTCTAACTTGATG 57.074 33.333 0.00 0.00 34.60 3.07
3433 3559 7.869937 TGAATGTATCTAGCTCTAACTTGATGC 59.130 37.037 0.00 0.00 35.94 3.91
3434 3560 6.968263 TGTATCTAGCTCTAACTTGATGCT 57.032 37.500 0.00 0.00 36.21 3.79
3435 3561 8.642935 ATGTATCTAGCTCTAACTTGATGCTA 57.357 34.615 0.00 0.00 36.21 3.49
3441 3567 6.968263 AGCTCTAACTTGATGCTAGATACA 57.032 37.500 0.00 0.00 31.71 2.29
3442 3568 7.537596 AGCTCTAACTTGATGCTAGATACAT 57.462 36.000 0.00 0.00 31.71 2.29
3443 3569 7.601856 AGCTCTAACTTGATGCTAGATACATC 58.398 38.462 0.00 0.00 43.46 3.06
3444 3570 6.811170 GCTCTAACTTGATGCTAGATACATCC 59.189 42.308 0.00 0.00 42.68 3.51
3445 3571 7.524532 GCTCTAACTTGATGCTAGATACATCCA 60.525 40.741 0.00 0.00 42.68 3.41
3446 3572 8.427902 TCTAACTTGATGCTAGATACATCCAT 57.572 34.615 0.00 0.00 42.68 3.41
3447 3573 8.874156 TCTAACTTGATGCTAGATACATCCATT 58.126 33.333 0.00 0.00 42.68 3.16
3448 3574 7.976135 AACTTGATGCTAGATACATCCATTC 57.024 36.000 0.00 0.00 42.68 2.67
3449 3575 6.162079 ACTTGATGCTAGATACATCCATTCG 58.838 40.000 0.00 0.00 42.68 3.34
3450 3576 5.982890 TGATGCTAGATACATCCATTCGA 57.017 39.130 0.00 0.00 42.68 3.71
3451 3577 5.958955 TGATGCTAGATACATCCATTCGAG 58.041 41.667 0.00 0.00 42.68 4.04
3452 3578 4.790765 TGCTAGATACATCCATTCGAGG 57.209 45.455 0.00 0.00 0.00 4.63
3453 3579 3.511540 TGCTAGATACATCCATTCGAGGG 59.488 47.826 0.00 0.00 0.00 4.30
3454 3580 3.764434 GCTAGATACATCCATTCGAGGGA 59.236 47.826 9.96 9.96 39.14 4.20
3455 3581 4.381079 GCTAGATACATCCATTCGAGGGAC 60.381 50.000 9.77 0.00 37.23 4.46
3456 3582 3.576861 AGATACATCCATTCGAGGGACA 58.423 45.455 9.77 0.50 37.23 4.02
3457 3583 3.967326 AGATACATCCATTCGAGGGACAA 59.033 43.478 9.77 0.50 37.23 3.18
3458 3584 2.698855 ACATCCATTCGAGGGACAAG 57.301 50.000 9.77 6.38 37.23 3.16
3459 3585 1.303309 CATCCATTCGAGGGACAAGC 58.697 55.000 9.77 0.00 37.23 4.01
3460 3586 1.134280 CATCCATTCGAGGGACAAGCT 60.134 52.381 9.77 0.00 37.23 3.74
3461 3587 0.984230 TCCATTCGAGGGACAAGCTT 59.016 50.000 3.95 0.00 0.00 3.74
3462 3588 1.351017 TCCATTCGAGGGACAAGCTTT 59.649 47.619 0.00 0.00 0.00 3.51
3463 3589 2.162681 CCATTCGAGGGACAAGCTTTT 58.837 47.619 0.00 0.00 0.00 2.27
3464 3590 2.558359 CCATTCGAGGGACAAGCTTTTT 59.442 45.455 0.00 0.00 0.00 1.94
3465 3591 3.366374 CCATTCGAGGGACAAGCTTTTTC 60.366 47.826 0.00 0.00 0.00 2.29
3466 3592 2.631160 TCGAGGGACAAGCTTTTTCA 57.369 45.000 0.00 0.00 0.00 2.69
3467 3593 2.494059 TCGAGGGACAAGCTTTTTCAG 58.506 47.619 0.00 0.00 0.00 3.02
3468 3594 2.104111 TCGAGGGACAAGCTTTTTCAGA 59.896 45.455 0.00 0.00 0.00 3.27
3469 3595 3.077359 CGAGGGACAAGCTTTTTCAGAT 58.923 45.455 0.00 0.00 0.00 2.90
3470 3596 3.120060 CGAGGGACAAGCTTTTTCAGATG 60.120 47.826 0.00 0.00 0.00 2.90
3471 3597 3.160269 AGGGACAAGCTTTTTCAGATGG 58.840 45.455 0.00 0.00 0.00 3.51
3472 3598 3.157087 GGGACAAGCTTTTTCAGATGGA 58.843 45.455 0.00 0.00 0.00 3.41
3473 3599 3.192212 GGGACAAGCTTTTTCAGATGGAG 59.808 47.826 0.00 0.00 0.00 3.86
3474 3600 3.192212 GGACAAGCTTTTTCAGATGGAGG 59.808 47.826 0.00 0.00 0.00 4.30
3475 3601 3.823304 GACAAGCTTTTTCAGATGGAGGT 59.177 43.478 0.00 0.00 0.00 3.85
3476 3602 4.985538 ACAAGCTTTTTCAGATGGAGGTA 58.014 39.130 0.00 0.00 0.00 3.08
3477 3603 5.006386 ACAAGCTTTTTCAGATGGAGGTAG 58.994 41.667 0.00 0.00 0.00 3.18
3478 3604 4.917906 AGCTTTTTCAGATGGAGGTAGT 57.082 40.909 0.00 0.00 0.00 2.73
3479 3605 6.173339 CAAGCTTTTTCAGATGGAGGTAGTA 58.827 40.000 0.00 0.00 0.00 1.82
3480 3606 5.735766 AGCTTTTTCAGATGGAGGTAGTAC 58.264 41.667 0.00 0.00 0.00 2.73
3481 3607 5.485708 AGCTTTTTCAGATGGAGGTAGTACT 59.514 40.000 0.00 0.00 0.00 2.73
3482 3608 6.668283 AGCTTTTTCAGATGGAGGTAGTACTA 59.332 38.462 0.00 0.00 0.00 1.82
3483 3609 6.981559 GCTTTTTCAGATGGAGGTAGTACTAG 59.018 42.308 1.87 0.00 0.00 2.57
3484 3610 7.363968 GCTTTTTCAGATGGAGGTAGTACTAGT 60.364 40.741 1.87 0.00 0.00 2.57
3485 3611 8.431910 TTTTTCAGATGGAGGTAGTACTAGTT 57.568 34.615 1.87 0.00 0.00 2.24
3486 3612 8.431910 TTTTCAGATGGAGGTAGTACTAGTTT 57.568 34.615 1.87 0.00 0.00 2.66
3487 3613 9.537852 TTTTCAGATGGAGGTAGTACTAGTTTA 57.462 33.333 1.87 0.00 0.00 2.01
3622 3749 5.879237 GGTTTACACCACATGACATATGTG 58.121 41.667 14.43 11.92 46.49 3.21
3630 3757 5.816449 CACATGACATATGTGGTAAGCAA 57.184 39.130 14.43 0.00 44.04 3.91
3631 3758 6.381481 CACATGACATATGTGGTAAGCAAT 57.619 37.500 14.43 0.00 44.04 3.56
3632 3759 6.798482 CACATGACATATGTGGTAAGCAATT 58.202 36.000 14.43 0.00 44.04 2.32
3633 3760 6.914215 CACATGACATATGTGGTAAGCAATTC 59.086 38.462 14.43 0.00 44.04 2.17
3634 3761 6.602803 ACATGACATATGTGGTAAGCAATTCA 59.397 34.615 14.43 0.32 0.00 2.57
3635 3762 7.122501 ACATGACATATGTGGTAAGCAATTCAA 59.877 33.333 14.43 0.00 0.00 2.69
3636 3763 7.459795 TGACATATGTGGTAAGCAATTCAAA 57.540 32.000 14.43 0.00 0.00 2.69
3637 3764 7.312154 TGACATATGTGGTAAGCAATTCAAAC 58.688 34.615 14.43 0.00 0.00 2.93
3638 3765 7.176515 TGACATATGTGGTAAGCAATTCAAACT 59.823 33.333 14.43 0.00 0.00 2.66
3639 3766 8.574251 ACATATGTGGTAAGCAATTCAAACTA 57.426 30.769 7.78 0.00 0.00 2.24
3640 3767 9.019656 ACATATGTGGTAAGCAATTCAAACTAA 57.980 29.630 7.78 0.00 0.00 2.24
3643 3770 6.919721 TGTGGTAAGCAATTCAAACTAATCC 58.080 36.000 0.00 0.00 0.00 3.01
3644 3771 6.491745 TGTGGTAAGCAATTCAAACTAATCCA 59.508 34.615 0.00 0.00 0.00 3.41
3645 3772 7.014711 TGTGGTAAGCAATTCAAACTAATCCAA 59.985 33.333 0.00 0.00 0.00 3.53
3646 3773 7.870445 GTGGTAAGCAATTCAAACTAATCCAAA 59.130 33.333 0.00 0.00 0.00 3.28
3647 3774 8.424918 TGGTAAGCAATTCAAACTAATCCAAAA 58.575 29.630 0.00 0.00 0.00 2.44
3648 3775 8.708742 GGTAAGCAATTCAAACTAATCCAAAAC 58.291 33.333 0.00 0.00 0.00 2.43
3649 3776 9.255304 GTAAGCAATTCAAACTAATCCAAAACA 57.745 29.630 0.00 0.00 0.00 2.83
3650 3777 8.729805 AAGCAATTCAAACTAATCCAAAACAA 57.270 26.923 0.00 0.00 0.00 2.83
3651 3778 8.729805 AGCAATTCAAACTAATCCAAAACAAA 57.270 26.923 0.00 0.00 0.00 2.83
3652 3779 8.829612 AGCAATTCAAACTAATCCAAAACAAAG 58.170 29.630 0.00 0.00 0.00 2.77
3653 3780 8.611757 GCAATTCAAACTAATCCAAAACAAAGT 58.388 29.630 0.00 0.00 0.00 2.66
3657 3784 9.796120 TTCAAACTAATCCAAAACAAAGTAGTG 57.204 29.630 0.00 0.00 0.00 2.74
3658 3785 8.410141 TCAAACTAATCCAAAACAAAGTAGTGG 58.590 33.333 0.00 0.00 0.00 4.00
3659 3786 7.891498 AACTAATCCAAAACAAAGTAGTGGT 57.109 32.000 0.00 0.00 0.00 4.16
3660 3787 8.983702 AACTAATCCAAAACAAAGTAGTGGTA 57.016 30.769 0.00 0.00 0.00 3.25
3661 3788 9.582648 AACTAATCCAAAACAAAGTAGTGGTAT 57.417 29.630 0.00 0.00 0.00 2.73
3662 3789 9.582648 ACTAATCCAAAACAAAGTAGTGGTATT 57.417 29.630 0.00 0.00 0.00 1.89
3663 3790 9.840427 CTAATCCAAAACAAAGTAGTGGTATTG 57.160 33.333 0.00 0.00 0.00 1.90
3664 3791 6.642707 TCCAAAACAAAGTAGTGGTATTGG 57.357 37.500 0.00 0.00 36.89 3.16
3685 3812 3.066760 GGTTTACCATGGCAGCTAATGAC 59.933 47.826 13.04 0.00 34.70 3.06
3743 3871 5.127519 TGGATCTGGAGCCATGTTAATTTTG 59.872 40.000 3.24 0.00 42.75 2.44
3796 3924 3.322466 CCCCTGCAACGAGAGGGT 61.322 66.667 5.78 0.00 46.96 4.34
3856 3985 1.348064 AGAATGGAGACGGTGTTGGA 58.652 50.000 0.00 0.00 0.00 3.53
3866 3995 3.190535 AGACGGTGTTGGATTGCATAAAC 59.809 43.478 0.00 0.00 0.00 2.01
3895 4024 6.583050 GTCGAGTACATTATTCATGCCTCTAC 59.417 42.308 0.00 0.00 36.14 2.59
3939 4068 6.371548 CACCTGAAAATTCATTCCGTTCTCTA 59.628 38.462 0.00 0.00 36.46 2.43
4021 4150 1.758440 AAGGCTGACAGTGGCGAAGA 61.758 55.000 3.99 0.00 35.01 2.87
4034 4163 1.071605 GCGAAGACATTCTTGCGTCT 58.928 50.000 0.00 0.00 44.30 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.334006 TACAAAATGGGCATTGGGGT 57.666 45.000 0.00 0.00 0.00 4.95
117 119 1.446907 GTCCTCAACCACTGCATGAG 58.553 55.000 7.20 7.20 40.17 2.90
198 201 1.134699 CAAGAATCAGCTCCGCTACCA 60.135 52.381 0.00 0.00 36.40 3.25
248 253 0.600057 CCACCTTTTGCTCCTTGCTC 59.400 55.000 0.00 0.00 43.37 4.26
271 276 6.071560 TCGCTATTCTCTCTTAGTTTTGGACA 60.072 38.462 0.00 0.00 0.00 4.02
277 282 6.096987 TGGTCATCGCTATTCTCTCTTAGTTT 59.903 38.462 0.00 0.00 0.00 2.66
282 290 5.543507 AATGGTCATCGCTATTCTCTCTT 57.456 39.130 0.00 0.00 0.00 2.85
298 306 7.617041 ATTTGTAGCTAGAACTCAAATGGTC 57.383 36.000 14.92 0.00 37.34 4.02
356 371 4.149511 TCCATACATGCTCGGATTTTCA 57.850 40.909 0.00 0.00 0.00 2.69
364 379 3.270027 TGGTTTCTTCCATACATGCTCG 58.730 45.455 0.00 0.00 31.96 5.03
373 388 2.568509 CCCTGCATTTGGTTTCTTCCAT 59.431 45.455 0.00 0.00 37.33 3.41
458 482 5.939296 TGCAATGAAGTTACTGTGATCATCA 59.061 36.000 0.00 0.00 30.76 3.07
501 525 5.241728 CGGAGTCCATAGTTGATACATGAGA 59.758 44.000 10.49 0.00 0.00 3.27
516 541 1.482593 GTTGATCTCCACGGAGTCCAT 59.517 52.381 10.49 0.00 41.61 3.41
524 549 0.652592 GAATGGCGTTGATCTCCACG 59.347 55.000 0.00 7.92 33.45 4.94
691 725 5.009010 ACAACAATGAGACGCTTGAAAATCT 59.991 36.000 0.00 0.00 0.00 2.40
692 726 5.215160 ACAACAATGAGACGCTTGAAAATC 58.785 37.500 0.00 0.00 0.00 2.17
705 739 5.649782 ATTTGCTTCCCTACAACAATGAG 57.350 39.130 0.00 0.00 0.00 2.90
751 793 6.238211 CGGATAAGCTAACTCTGAAACAATGG 60.238 42.308 0.00 0.00 0.00 3.16
760 806 5.277825 CAAGACTCGGATAAGCTAACTCTG 58.722 45.833 0.00 0.00 0.00 3.35
775 821 6.448662 GAGGCACTAGAGTTCCAAGACTCG 62.449 54.167 0.00 0.00 45.27 4.18
785 831 3.983044 AAATTCGGAGGCACTAGAGTT 57.017 42.857 0.00 0.00 41.55 3.01
797 843 6.696411 ACAATTTGAGGCAAATAAATTCGGA 58.304 32.000 2.79 0.00 42.32 4.55
825 872 4.524802 TCCTCAAACAATGGCCATATCT 57.475 40.909 21.15 0.00 0.00 1.98
904 951 2.173669 CGGGCTGCCTAATGTCGTG 61.174 63.158 19.68 0.00 0.00 4.35
905 952 2.186903 CGGGCTGCCTAATGTCGT 59.813 61.111 19.68 0.00 0.00 4.34
906 953 1.883084 GACGGGCTGCCTAATGTCG 60.883 63.158 19.68 14.52 0.00 4.35
907 954 1.523938 GGACGGGCTGCCTAATGTC 60.524 63.158 19.68 19.04 0.00 3.06
908 955 2.590092 GGACGGGCTGCCTAATGT 59.410 61.111 19.68 11.98 0.00 2.71
909 956 2.203209 GGGACGGGCTGCCTAATG 60.203 66.667 19.68 8.78 0.00 1.90
922 969 1.917336 TTTCCTACATGGGCCGGGAC 61.917 60.000 2.18 0.00 36.20 4.46
923 970 1.616930 TTTCCTACATGGGCCGGGA 60.617 57.895 2.18 0.00 36.20 5.14
924 971 1.152963 CTTTCCTACATGGGCCGGG 60.153 63.158 2.18 0.00 36.20 5.73
925 972 1.823899 GCTTTCCTACATGGGCCGG 60.824 63.158 0.00 0.00 36.20 6.13
926 973 2.180204 CGCTTTCCTACATGGGCCG 61.180 63.158 0.00 0.00 36.20 6.13
927 974 0.815615 CTCGCTTTCCTACATGGGCC 60.816 60.000 0.00 0.00 36.20 5.80
928 975 0.107654 ACTCGCTTTCCTACATGGGC 60.108 55.000 0.00 0.00 36.20 5.36
929 976 1.656652 CACTCGCTTTCCTACATGGG 58.343 55.000 0.00 0.00 36.20 4.00
930 977 1.009829 GCACTCGCTTTCCTACATGG 58.990 55.000 0.00 0.00 34.30 3.66
931 978 0.647410 CGCACTCGCTTTCCTACATG 59.353 55.000 0.00 0.00 35.30 3.21
932 979 3.050703 CGCACTCGCTTTCCTACAT 57.949 52.632 0.00 0.00 35.30 2.29
933 980 4.571250 CGCACTCGCTTTCCTACA 57.429 55.556 0.00 0.00 35.30 2.74
943 990 2.835701 TTCTTGGGCTAGCGCACTCG 62.836 60.000 31.73 22.09 41.26 4.18
944 991 0.673644 TTTCTTGGGCTAGCGCACTC 60.674 55.000 31.73 6.68 41.26 3.51
945 992 0.674895 CTTTCTTGGGCTAGCGCACT 60.675 55.000 31.73 0.00 41.26 4.40
946 993 1.796796 CTTTCTTGGGCTAGCGCAC 59.203 57.895 31.73 14.21 40.99 5.34
947 994 2.040544 GCTTTCTTGGGCTAGCGCA 61.041 57.895 28.72 28.72 38.10 6.09
987 1036 4.439289 GGCTTATTCATTCAAGTGCTGGTC 60.439 45.833 0.00 0.00 0.00 4.02
988 1037 3.445096 GGCTTATTCATTCAAGTGCTGGT 59.555 43.478 0.00 0.00 0.00 4.00
989 1038 3.488047 CGGCTTATTCATTCAAGTGCTGG 60.488 47.826 0.00 0.00 0.00 4.85
990 1039 3.688272 CGGCTTATTCATTCAAGTGCTG 58.312 45.455 0.00 0.00 0.00 4.41
991 1040 2.098117 GCGGCTTATTCATTCAAGTGCT 59.902 45.455 0.00 0.00 0.00 4.40
992 1041 2.454055 GCGGCTTATTCATTCAAGTGC 58.546 47.619 0.00 0.00 0.00 4.40
994 1043 1.670811 CCGCGGCTTATTCATTCAAGT 59.329 47.619 14.67 0.00 0.00 3.16
995 1044 1.670811 ACCGCGGCTTATTCATTCAAG 59.329 47.619 28.58 0.00 0.00 3.02
996 1045 1.400142 CACCGCGGCTTATTCATTCAA 59.600 47.619 28.58 0.00 0.00 2.69
997 1046 1.013596 CACCGCGGCTTATTCATTCA 58.986 50.000 28.58 0.00 0.00 2.57
998 1047 1.014352 ACACCGCGGCTTATTCATTC 58.986 50.000 28.58 0.00 0.00 2.67
999 1048 0.732571 CACACCGCGGCTTATTCATT 59.267 50.000 28.58 0.00 0.00 2.57
1000 1049 1.095228 CCACACCGCGGCTTATTCAT 61.095 55.000 28.58 0.00 0.00 2.57
1041 1090 7.196331 GCTTTTCTTTTTGAGACAAAGCTAGA 58.804 34.615 17.97 0.00 44.35 2.43
1067 1123 0.979187 CCGGGGCTTTGGGTCTACTA 60.979 60.000 0.00 0.00 0.00 1.82
1068 1124 2.298661 CCGGGGCTTTGGGTCTACT 61.299 63.158 0.00 0.00 0.00 2.57
1069 1125 2.253403 CTCCGGGGCTTTGGGTCTAC 62.253 65.000 0.00 0.00 0.00 2.59
1160 1219 5.129485 GGATCCTCCTCATCTTCTGTGTAAA 59.871 44.000 3.84 0.00 32.53 2.01
1210 1269 4.560856 CGCTCTCCTCTTCGCCCG 62.561 72.222 0.00 0.00 0.00 6.13
1244 1303 1.625818 ACTTCGCCATGACCTTCTCTT 59.374 47.619 0.00 0.00 0.00 2.85
1257 1316 1.362406 GCTGCTCCTTGTACTTCGCC 61.362 60.000 0.00 0.00 0.00 5.54
1264 1323 1.483827 CTCCATCTGCTGCTCCTTGTA 59.516 52.381 0.00 0.00 0.00 2.41
1331 1390 0.249155 ACTTTTCCTGTCGACGCGAA 60.249 50.000 15.93 11.72 37.72 4.70
1337 1396 0.316204 GGACGGACTTTTCCTGTCGA 59.684 55.000 0.00 0.00 42.06 4.20
1361 1420 2.010740 GAAAACGAGGAGCGCGCTAC 62.011 60.000 36.01 36.01 46.04 3.58
1401 1462 0.035439 ACAATGGGGAATCGCGAAGT 60.035 50.000 15.24 3.52 0.00 3.01
1402 1463 1.094785 AACAATGGGGAATCGCGAAG 58.905 50.000 15.24 0.00 0.00 3.79
1625 1687 0.594602 TCACGAACACGACGGAAGAT 59.405 50.000 0.00 0.00 34.93 2.40
1636 1698 0.176910 TCTGGCAGTTGTCACGAACA 59.823 50.000 15.27 0.00 35.59 3.18
1718 1780 6.095377 GCTGGTCAATTATTCAGAAAGTTGG 58.905 40.000 0.00 0.00 0.00 3.77
1737 1799 6.068670 ACTCCTAAATTTGTACTTTGCTGGT 58.931 36.000 0.00 0.00 0.00 4.00
1753 1815 9.933723 GGTCTAATACAAAGTTGTACTCCTAAA 57.066 33.333 6.05 0.00 45.47 1.85
1754 1816 9.092338 TGGTCTAATACAAAGTTGTACTCCTAA 57.908 33.333 6.05 0.00 45.47 2.69
1755 1817 8.654485 TGGTCTAATACAAAGTTGTACTCCTA 57.346 34.615 6.05 0.00 45.47 2.94
1756 1818 7.549147 TGGTCTAATACAAAGTTGTACTCCT 57.451 36.000 6.05 0.00 45.47 3.69
1757 1819 6.313164 GCTGGTCTAATACAAAGTTGTACTCC 59.687 42.308 6.05 5.81 45.47 3.85
1773 1835 5.361571 TCCATATTAACTGACGCTGGTCTAA 59.638 40.000 0.00 0.00 43.79 2.10
1847 1909 6.300354 TCGAAAGATTCTGTGAGAAAAACC 57.700 37.500 0.00 0.00 37.82 3.27
1906 1974 4.493747 GCGAGCGCCTAGGAACGT 62.494 66.667 14.75 0.00 34.56 3.99
1907 1975 2.332362 TAAGCGAGCGCCTAGGAACG 62.332 60.000 14.75 8.87 43.17 3.95
1953 2021 1.398390 CTTAAGCGCAAGTAAGCCCTG 59.602 52.381 11.47 0.00 41.68 4.45
1956 2024 3.605952 GCTTAAGCGCAAGTAAGCC 57.394 52.632 27.07 15.95 42.70 4.35
1996 2064 0.033642 GATTAGGCGCTAGACACCCC 59.966 60.000 7.64 0.00 0.00 4.95
2000 2068 1.138266 GGTTGGATTAGGCGCTAGACA 59.862 52.381 7.64 0.00 0.00 3.41
2024 2119 2.730382 TGGCAGTTGAGCATTCATCAT 58.270 42.857 0.00 0.00 35.83 2.45
2098 2200 1.333619 AGCAAACAACACTACCGCTTG 59.666 47.619 0.00 0.00 0.00 4.01
2104 2206 4.334481 AGGTACACAAGCAAACAACACTAC 59.666 41.667 0.00 0.00 0.00 2.73
2122 2224 4.455190 GTGATCGGGTAGATAGTGAGGTAC 59.545 50.000 0.00 0.00 40.26 3.34
2183 2288 5.929697 ATATTAACACCATGTGATCGCAG 57.070 39.130 15.24 4.56 36.96 5.18
2245 2350 6.518493 AGTGACAAGTACAATTCGTAAGGAA 58.482 36.000 0.00 0.00 39.42 3.36
2266 2371 4.461081 GCCTACCTATCTATCCACTGAGTG 59.539 50.000 5.42 5.42 0.00 3.51
2280 2385 2.623889 GACGACACAGATGCCTACCTAT 59.376 50.000 0.00 0.00 0.00 2.57
2348 2453 4.084223 AGTGCATACGAAAACAAGGTAACG 60.084 41.667 0.00 0.00 46.39 3.18
2362 2467 7.061905 GGCTACTTTGTATATGTAGTGCATACG 59.938 40.741 2.77 0.00 42.28 3.06
2465 2573 4.136796 CAAGTCAACCTCAATGTGAAGGA 58.863 43.478 0.00 0.00 0.00 3.36
2479 2587 6.710744 TCCAAACTCCTAATCTTCAAGTCAAC 59.289 38.462 0.00 0.00 0.00 3.18
2506 2614 2.663602 CGATCTCAACGTCACTTTCTGG 59.336 50.000 0.00 0.00 0.00 3.86
2514 2622 1.731709 CAATTGGCGATCTCAACGTCA 59.268 47.619 0.00 0.00 43.38 4.35
2518 2626 2.253603 GCAACAATTGGCGATCTCAAC 58.746 47.619 10.83 0.00 0.00 3.18
2680 2788 2.157474 CGTTTGGCCTTTTTATGCTTGC 59.843 45.455 3.32 0.00 0.00 4.01
2700 2808 2.125552 TGCCGAGCAACAGATCCG 60.126 61.111 0.00 0.00 34.76 4.18
2775 2883 1.795162 GCAATTCCAGAAATGCCGACG 60.795 52.381 8.90 0.00 40.37 5.12
2778 2886 1.473677 TCAGCAATTCCAGAAATGCCG 59.526 47.619 15.10 7.00 45.66 5.69
2811 2919 3.735237 ACCGAACTACTGCCATCATAG 57.265 47.619 0.00 0.00 0.00 2.23
2828 2936 2.976494 AAGCCCACCTTCACCAACCG 62.976 60.000 0.00 0.00 0.00 4.44
2881 2989 7.016563 TGTGTTGATATATAGAGGAAGCCACAT 59.983 37.037 0.00 0.00 0.00 3.21
2897 3005 5.582269 CCATCACGAGAAACTGTGTTGATAT 59.418 40.000 0.00 0.00 37.79 1.63
2898 3006 4.929211 CCATCACGAGAAACTGTGTTGATA 59.071 41.667 0.00 0.00 37.79 2.15
2910 3018 6.604396 TGGTAGTATTCTTACCATCACGAGAA 59.396 38.462 0.18 0.00 38.80 2.87
2961 3069 1.537202 GTCACAATGAAGGTCTGGCAC 59.463 52.381 0.00 0.00 0.00 5.01
2974 3082 0.981183 TAGGAACCGGCTGTCACAAT 59.019 50.000 0.00 0.00 0.00 2.71
3001 3109 2.361610 CCAGACAATGGCGCCCTT 60.362 61.111 26.77 18.94 43.83 3.95
3092 3200 4.258702 AGTTACTCATCACCACACAGTC 57.741 45.455 0.00 0.00 0.00 3.51
3165 3273 9.526713 GATCATACATTAGCAGATACAGTATGG 57.473 37.037 13.06 0.00 43.62 2.74
3170 3278 8.522003 AGTCTGATCATACATTAGCAGATACAG 58.478 37.037 13.15 0.00 35.20 2.74
3171 3279 8.414629 AGTCTGATCATACATTAGCAGATACA 57.585 34.615 13.15 0.00 35.20 2.29
3172 3280 9.138062 CAAGTCTGATCATACATTAGCAGATAC 57.862 37.037 13.15 0.00 35.20 2.24
3173 3281 8.864087 ACAAGTCTGATCATACATTAGCAGATA 58.136 33.333 13.15 0.00 35.20 1.98
3174 3282 7.733969 ACAAGTCTGATCATACATTAGCAGAT 58.266 34.615 13.15 0.00 35.20 2.90
3264 3389 3.181472 GGATTGATCCACCAAATCCAAGC 60.181 47.826 14.06 0.00 46.38 4.01
3292 3417 4.898829 TGATTACAATGCTACCATGTGC 57.101 40.909 0.00 0.00 0.00 4.57
3379 3505 9.967715 TTGAGAGACAAGCTTGGGACAATCTTT 62.968 40.741 29.18 16.47 37.48 2.52
3380 3506 8.605350 TTGAGAGACAAGCTTGGGACAATCTT 62.605 42.308 29.18 12.33 37.48 2.40
3381 3507 7.213858 TTGAGAGACAAGCTTGGGACAATCT 62.214 44.000 29.18 20.71 37.48 2.40
3382 3508 5.044301 TTGAGAGACAAGCTTGGGACAATC 61.044 45.833 29.18 16.51 37.48 2.67
3383 3509 3.181440 TTGAGAGACAAGCTTGGGACAAT 60.181 43.478 29.18 8.09 37.48 2.71
3384 3510 2.172505 TTGAGAGACAAGCTTGGGACAA 59.827 45.455 29.18 21.59 37.48 3.18
3385 3511 1.423584 TGAGAGACAAGCTTGGGACA 58.576 50.000 29.18 17.71 0.00 4.02
3386 3512 2.550830 TTGAGAGACAAGCTTGGGAC 57.449 50.000 29.18 19.11 34.20 4.46
3387 3513 3.072915 TCATTTGAGAGACAAGCTTGGGA 59.927 43.478 29.18 8.51 39.77 4.37
3388 3514 3.415212 TCATTTGAGAGACAAGCTTGGG 58.585 45.455 29.18 6.83 39.77 4.12
3389 3515 5.048224 ACATTCATTTGAGAGACAAGCTTGG 60.048 40.000 29.18 12.28 39.77 3.61
3390 3516 6.010294 ACATTCATTTGAGAGACAAGCTTG 57.990 37.500 24.84 24.84 39.77 4.01
3391 3517 7.828223 AGATACATTCATTTGAGAGACAAGCTT 59.172 33.333 0.00 0.00 39.77 3.74
3392 3518 7.337167 AGATACATTCATTTGAGAGACAAGCT 58.663 34.615 0.00 0.00 39.77 3.74
3393 3519 7.551035 AGATACATTCATTTGAGAGACAAGC 57.449 36.000 0.00 0.00 39.77 4.01
3394 3520 8.763356 GCTAGATACATTCATTTGAGAGACAAG 58.237 37.037 0.00 0.00 39.77 3.16
3395 3521 8.481314 AGCTAGATACATTCATTTGAGAGACAA 58.519 33.333 0.00 0.00 36.65 3.18
3396 3522 8.016301 AGCTAGATACATTCATTTGAGAGACA 57.984 34.615 0.00 0.00 0.00 3.41
3397 3523 8.359642 AGAGCTAGATACATTCATTTGAGAGAC 58.640 37.037 0.00 0.00 0.00 3.36
3398 3524 8.476064 AGAGCTAGATACATTCATTTGAGAGA 57.524 34.615 0.00 0.00 0.00 3.10
3400 3526 9.973450 GTTAGAGCTAGATACATTCATTTGAGA 57.027 33.333 0.00 0.00 0.00 3.27
3401 3527 9.979578 AGTTAGAGCTAGATACATTCATTTGAG 57.020 33.333 0.00 0.00 0.00 3.02
3406 3532 9.926158 CATCAAGTTAGAGCTAGATACATTCAT 57.074 33.333 0.00 0.00 0.00 2.57
3407 3533 7.869937 GCATCAAGTTAGAGCTAGATACATTCA 59.130 37.037 0.00 0.00 0.00 2.57
3408 3534 8.087750 AGCATCAAGTTAGAGCTAGATACATTC 58.912 37.037 0.00 0.00 33.06 2.67
3409 3535 7.961351 AGCATCAAGTTAGAGCTAGATACATT 58.039 34.615 0.00 0.00 33.06 2.71
3410 3536 7.537596 AGCATCAAGTTAGAGCTAGATACAT 57.462 36.000 0.00 0.00 33.06 2.29
3411 3537 6.968263 AGCATCAAGTTAGAGCTAGATACA 57.032 37.500 0.00 0.00 33.06 2.29
3417 3543 8.642935 ATGTATCTAGCATCAAGTTAGAGCTA 57.357 34.615 0.00 0.00 42.31 3.32
3418 3544 6.968263 TGTATCTAGCATCAAGTTAGAGCT 57.032 37.500 0.00 0.00 42.31 4.09
3419 3545 6.811170 GGATGTATCTAGCATCAAGTTAGAGC 59.189 42.308 9.99 0.00 42.31 4.09
3420 3546 7.890515 TGGATGTATCTAGCATCAAGTTAGAG 58.109 38.462 9.99 0.00 42.31 2.43
3421 3547 7.839680 TGGATGTATCTAGCATCAAGTTAGA 57.160 36.000 9.99 0.00 43.05 2.10
3422 3548 9.149225 GAATGGATGTATCTAGCATCAAGTTAG 57.851 37.037 9.99 0.00 43.17 2.34
3423 3549 7.814587 CGAATGGATGTATCTAGCATCAAGTTA 59.185 37.037 9.99 0.00 43.17 2.24
3424 3550 6.648310 CGAATGGATGTATCTAGCATCAAGTT 59.352 38.462 9.99 3.23 43.17 2.66
3425 3551 6.015095 TCGAATGGATGTATCTAGCATCAAGT 60.015 38.462 9.99 0.00 43.17 3.16
3426 3552 6.393171 TCGAATGGATGTATCTAGCATCAAG 58.607 40.000 9.99 0.00 43.17 3.02
3427 3553 6.345096 TCGAATGGATGTATCTAGCATCAA 57.655 37.500 9.99 0.98 43.17 2.57
3428 3554 5.105595 CCTCGAATGGATGTATCTAGCATCA 60.106 44.000 9.99 0.00 43.17 3.07
3429 3555 5.347342 CCTCGAATGGATGTATCTAGCATC 58.653 45.833 1.37 1.37 41.30 3.91
3430 3556 4.161189 CCCTCGAATGGATGTATCTAGCAT 59.839 45.833 0.00 0.00 0.00 3.79
3431 3557 3.511540 CCCTCGAATGGATGTATCTAGCA 59.488 47.826 0.00 0.00 0.00 3.49
3432 3558 3.764434 TCCCTCGAATGGATGTATCTAGC 59.236 47.826 0.00 0.00 0.00 3.42
3433 3559 4.767409 TGTCCCTCGAATGGATGTATCTAG 59.233 45.833 6.62 0.00 33.65 2.43
3434 3560 4.736473 TGTCCCTCGAATGGATGTATCTA 58.264 43.478 6.62 0.00 33.65 1.98
3435 3561 3.576861 TGTCCCTCGAATGGATGTATCT 58.423 45.455 6.62 0.00 33.65 1.98
3436 3562 4.310769 CTTGTCCCTCGAATGGATGTATC 58.689 47.826 6.62 0.00 33.65 2.24
3437 3563 3.495100 GCTTGTCCCTCGAATGGATGTAT 60.495 47.826 6.62 0.00 33.65 2.29
3438 3564 2.158957 GCTTGTCCCTCGAATGGATGTA 60.159 50.000 6.62 0.00 33.65 2.29
3439 3565 1.407437 GCTTGTCCCTCGAATGGATGT 60.407 52.381 6.62 0.00 33.65 3.06
3440 3566 1.134280 AGCTTGTCCCTCGAATGGATG 60.134 52.381 6.62 2.88 33.65 3.51
3441 3567 1.207791 AGCTTGTCCCTCGAATGGAT 58.792 50.000 6.62 0.00 33.65 3.41
3442 3568 0.984230 AAGCTTGTCCCTCGAATGGA 59.016 50.000 0.00 0.00 0.00 3.41
3443 3569 1.826385 AAAGCTTGTCCCTCGAATGG 58.174 50.000 0.00 0.00 0.00 3.16
3444 3570 3.253188 TGAAAAAGCTTGTCCCTCGAATG 59.747 43.478 0.00 0.00 0.00 2.67
3445 3571 3.486383 TGAAAAAGCTTGTCCCTCGAAT 58.514 40.909 0.00 0.00 0.00 3.34
3446 3572 2.878406 CTGAAAAAGCTTGTCCCTCGAA 59.122 45.455 0.00 0.00 0.00 3.71
3447 3573 2.104111 TCTGAAAAAGCTTGTCCCTCGA 59.896 45.455 0.00 0.00 0.00 4.04
3448 3574 2.494059 TCTGAAAAAGCTTGTCCCTCG 58.506 47.619 0.00 0.00 0.00 4.63
3449 3575 3.192212 CCATCTGAAAAAGCTTGTCCCTC 59.808 47.826 0.00 0.00 0.00 4.30
3450 3576 3.160269 CCATCTGAAAAAGCTTGTCCCT 58.840 45.455 0.00 0.00 0.00 4.20
3451 3577 3.157087 TCCATCTGAAAAAGCTTGTCCC 58.843 45.455 0.00 0.00 0.00 4.46
3452 3578 3.192212 CCTCCATCTGAAAAAGCTTGTCC 59.808 47.826 0.00 0.00 0.00 4.02
3453 3579 3.823304 ACCTCCATCTGAAAAAGCTTGTC 59.177 43.478 0.00 1.07 0.00 3.18
3454 3580 3.837355 ACCTCCATCTGAAAAAGCTTGT 58.163 40.909 0.00 0.00 0.00 3.16
3455 3581 5.006386 ACTACCTCCATCTGAAAAAGCTTG 58.994 41.667 0.00 0.00 0.00 4.01
3456 3582 5.248380 ACTACCTCCATCTGAAAAAGCTT 57.752 39.130 0.00 0.00 0.00 3.74
3457 3583 4.917906 ACTACCTCCATCTGAAAAAGCT 57.082 40.909 0.00 0.00 0.00 3.74
3458 3584 5.735766 AGTACTACCTCCATCTGAAAAAGC 58.264 41.667 0.00 0.00 0.00 3.51
3459 3585 8.068892 ACTAGTACTACCTCCATCTGAAAAAG 57.931 38.462 0.00 0.00 0.00 2.27
3460 3586 8.431910 AACTAGTACTACCTCCATCTGAAAAA 57.568 34.615 0.00 0.00 0.00 1.94
3461 3587 8.431910 AAACTAGTACTACCTCCATCTGAAAA 57.568 34.615 0.00 0.00 0.00 2.29
3462 3588 9.710818 ATAAACTAGTACTACCTCCATCTGAAA 57.289 33.333 0.00 0.00 0.00 2.69
3463 3589 9.710818 AATAAACTAGTACTACCTCCATCTGAA 57.289 33.333 0.00 0.00 0.00 3.02
3464 3590 9.710818 AAATAAACTAGTACTACCTCCATCTGA 57.289 33.333 0.00 0.00 0.00 3.27
3470 3596 9.823647 GGGTTTAAATAAACTAGTACTACCTCC 57.176 37.037 13.93 1.55 43.73 4.30
3478 3604 9.689501 CCATGGAAGGGTTTAAATAAACTAGTA 57.310 33.333 5.56 0.00 43.73 1.82
3479 3605 8.395605 TCCATGGAAGGGTTTAAATAAACTAGT 58.604 33.333 13.46 0.00 43.73 2.57
3480 3606 8.817092 TCCATGGAAGGGTTTAAATAAACTAG 57.183 34.615 13.46 0.00 43.73 2.57
3481 3607 9.250246 CTTCCATGGAAGGGTTTAAATAAACTA 57.750 33.333 37.26 8.09 45.60 2.24
3482 3608 8.134202 CTTCCATGGAAGGGTTTAAATAAACT 57.866 34.615 37.26 0.00 45.60 2.66
3515 3642 4.341235 TCTTATACTTGCCGCTGAGTACAT 59.659 41.667 8.68 0.80 31.70 2.29
3599 3726 5.879237 CACATATGTCATGTGGTGTAAACC 58.121 41.667 5.07 0.00 44.04 3.27
3608 3735 5.816449 TTGCTTACCACATATGTCATGTG 57.184 39.130 5.07 7.94 46.49 3.21
3609 3736 6.602803 TGAATTGCTTACCACATATGTCATGT 59.397 34.615 5.07 6.42 0.00 3.21
3610 3737 7.030075 TGAATTGCTTACCACATATGTCATG 57.970 36.000 5.07 0.13 0.00 3.07
3611 3738 7.643569 TTGAATTGCTTACCACATATGTCAT 57.356 32.000 5.07 0.00 0.00 3.06
3612 3739 7.176515 AGTTTGAATTGCTTACCACATATGTCA 59.823 33.333 5.07 0.00 0.00 3.58
3613 3740 7.538575 AGTTTGAATTGCTTACCACATATGTC 58.461 34.615 5.07 0.00 0.00 3.06
3614 3741 7.466746 AGTTTGAATTGCTTACCACATATGT 57.533 32.000 1.41 1.41 0.00 2.29
3617 3744 8.682710 GGATTAGTTTGAATTGCTTACCACATA 58.317 33.333 0.00 0.00 0.00 2.29
3618 3745 7.178274 TGGATTAGTTTGAATTGCTTACCACAT 59.822 33.333 0.00 0.00 0.00 3.21
3619 3746 6.491745 TGGATTAGTTTGAATTGCTTACCACA 59.508 34.615 0.00 0.00 0.00 4.17
3620 3747 6.919721 TGGATTAGTTTGAATTGCTTACCAC 58.080 36.000 0.00 0.00 0.00 4.16
3621 3748 7.531857 TTGGATTAGTTTGAATTGCTTACCA 57.468 32.000 0.00 0.00 0.00 3.25
3622 3749 8.708742 GTTTTGGATTAGTTTGAATTGCTTACC 58.291 33.333 0.00 0.00 0.00 2.85
3623 3750 9.255304 TGTTTTGGATTAGTTTGAATTGCTTAC 57.745 29.630 0.00 0.00 0.00 2.34
3624 3751 9.823647 TTGTTTTGGATTAGTTTGAATTGCTTA 57.176 25.926 0.00 0.00 0.00 3.09
3625 3752 8.729805 TTGTTTTGGATTAGTTTGAATTGCTT 57.270 26.923 0.00 0.00 0.00 3.91
3626 3753 8.729805 TTTGTTTTGGATTAGTTTGAATTGCT 57.270 26.923 0.00 0.00 0.00 3.91
3627 3754 8.611757 ACTTTGTTTTGGATTAGTTTGAATTGC 58.388 29.630 0.00 0.00 0.00 3.56
3631 3758 9.796120 CACTACTTTGTTTTGGATTAGTTTGAA 57.204 29.630 0.00 0.00 0.00 2.69
3632 3759 8.410141 CCACTACTTTGTTTTGGATTAGTTTGA 58.590 33.333 0.00 0.00 0.00 2.69
3633 3760 8.194769 ACCACTACTTTGTTTTGGATTAGTTTG 58.805 33.333 0.00 0.00 0.00 2.93
3634 3761 8.301252 ACCACTACTTTGTTTTGGATTAGTTT 57.699 30.769 0.00 0.00 0.00 2.66
3635 3762 7.891498 ACCACTACTTTGTTTTGGATTAGTT 57.109 32.000 0.00 0.00 0.00 2.24
3636 3763 9.582648 AATACCACTACTTTGTTTTGGATTAGT 57.417 29.630 0.00 0.00 0.00 2.24
3637 3764 9.840427 CAATACCACTACTTTGTTTTGGATTAG 57.160 33.333 0.00 0.00 0.00 1.73
3638 3765 8.798402 CCAATACCACTACTTTGTTTTGGATTA 58.202 33.333 5.50 0.00 41.02 1.75
3639 3766 7.289084 ACCAATACCACTACTTTGTTTTGGATT 59.711 33.333 14.95 0.00 41.02 3.01
3640 3767 6.780522 ACCAATACCACTACTTTGTTTTGGAT 59.219 34.615 14.95 1.37 41.02 3.41
3641 3768 6.130569 ACCAATACCACTACTTTGTTTTGGA 58.869 36.000 14.95 0.00 41.02 3.53
3642 3769 6.399639 ACCAATACCACTACTTTGTTTTGG 57.600 37.500 8.79 8.79 42.87 3.28
3643 3770 9.240159 GTAAACCAATACCACTACTTTGTTTTG 57.760 33.333 0.00 0.00 0.00 2.44
3644 3771 8.415553 GGTAAACCAATACCACTACTTTGTTTT 58.584 33.333 0.00 0.00 44.01 2.43
3645 3772 7.944061 GGTAAACCAATACCACTACTTTGTTT 58.056 34.615 0.00 0.00 44.01 2.83
3646 3773 7.514784 GGTAAACCAATACCACTACTTTGTT 57.485 36.000 0.00 0.00 44.01 2.83
3663 3790 3.066760 GTCATTAGCTGCCATGGTAAACC 59.933 47.826 14.67 0.02 34.28 3.27
3664 3791 3.694072 TGTCATTAGCTGCCATGGTAAAC 59.306 43.478 14.67 3.89 34.28 2.01
3685 3812 5.862845 ACATGGCTCCTGATACTTATCTTG 58.137 41.667 0.00 0.00 33.88 3.02
3743 3871 8.702438 CAATGGAGATTAATGTGTTGAAACAAC 58.298 33.333 7.55 7.55 41.21 3.32
3829 3958 3.004734 CACCGTCTCCATTCTTGCTTTTT 59.995 43.478 0.00 0.00 0.00 1.94
3842 3971 0.605319 TGCAATCCAACACCGTCTCC 60.605 55.000 0.00 0.00 0.00 3.71
3856 3985 5.242434 TGTACTCGACCAAGTTTATGCAAT 58.758 37.500 0.00 0.00 0.00 3.56
3866 3995 5.050091 GGCATGAATAATGTACTCGACCAAG 60.050 44.000 0.00 0.00 38.65 3.61
3895 4024 2.855963 GTGAATCAATGCCTTTCATGCG 59.144 45.455 0.00 0.00 35.13 4.73
3968 4097 1.077828 TCTCCTCCACTCACTCATGGT 59.922 52.381 0.00 0.00 37.27 3.55
3969 4098 1.857965 TCTCCTCCACTCACTCATGG 58.142 55.000 0.00 0.00 37.32 3.66
4002 4131 1.302033 CTTCGCCACTGTCAGCCTT 60.302 57.895 0.00 0.00 0.00 4.35
4021 4150 0.250467 AGTGGCAGACGCAAGAATGT 60.250 50.000 0.00 0.00 41.24 2.71
4023 4152 1.276421 AGTAGTGGCAGACGCAAGAAT 59.724 47.619 0.00 0.00 41.24 2.40
4034 4163 2.682136 TGCCCGCTAGTAGTGGCA 60.682 61.111 23.60 23.60 44.40 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.