Multiple sequence alignment - TraesCS6B01G124200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G124200 chr6B 100.000 6035 0 0 1 6035 119124550 119130584 0.000000e+00 11145.0
1 TraesCS6B01G124200 chr6D 95.322 4211 144 23 1345 5522 52336831 52341021 0.000000e+00 6636.0
2 TraesCS6B01G124200 chr6D 94.357 319 12 3 5718 6035 52341819 52342132 9.090000e-133 484.0
3 TraesCS6B01G124200 chr6D 92.260 323 12 5 948 1257 52336504 52336826 4.290000e-121 446.0
4 TraesCS6B01G124200 chr6D 92.965 199 11 1 5517 5715 52341058 52341253 2.750000e-73 287.0
5 TraesCS6B01G124200 chr6D 94.521 73 3 1 809 881 52336090 52336161 1.780000e-20 111.0
6 TraesCS6B01G124200 chr6A 95.547 3234 104 19 2311 5523 63117325 63120539 0.000000e+00 5138.0
7 TraesCS6B01G124200 chr6A 85.556 450 46 15 204 642 63115730 63116171 2.560000e-123 453.0
8 TraesCS6B01G124200 chr6A 91.212 330 15 7 948 1264 63116683 63117011 2.580000e-118 436.0
9 TraesCS6B01G124200 chr6A 91.531 307 17 8 1345 1649 63117006 63117305 1.210000e-111 414.0
10 TraesCS6B01G124200 chr6A 94.472 199 11 0 5517 5715 63120575 63120773 2.110000e-79 307.0
11 TraesCS6B01G124200 chr6A 94.891 137 6 1 5718 5853 63121343 63121479 4.740000e-51 213.0
12 TraesCS6B01G124200 chr6A 82.845 239 16 13 643 881 63116211 63116424 2.220000e-44 191.0
13 TraesCS6B01G124200 chr6A 91.954 87 5 1 1260 1346 607959947 607960031 2.950000e-23 121.0
14 TraesCS6B01G124200 chr6A 89.362 94 7 2 1260 1353 15768234 15768144 1.370000e-21 115.0
15 TraesCS6B01G124200 chr1A 85.639 1323 131 30 3961 5263 306642596 306643879 0.000000e+00 1336.0
16 TraesCS6B01G124200 chr1A 88.180 846 63 12 2586 3399 306641089 306641929 0.000000e+00 974.0
17 TraesCS6B01G124200 chr1A 89.263 624 51 12 1347 1966 306639727 306640338 0.000000e+00 767.0
18 TraesCS6B01G124200 chr1A 92.553 282 20 1 3398 3678 306641900 306642181 2.620000e-108 403.0
19 TraesCS6B01G124200 chr1A 87.456 287 27 5 964 1244 306639429 306639712 7.550000e-84 322.0
20 TraesCS6B01G124200 chr1A 85.771 253 22 7 3692 3934 306642267 306642515 7.760000e-64 255.0
21 TraesCS6B01G124200 chr1D 85.466 1321 139 33 3959 5263 245980876 245982159 0.000000e+00 1327.0
22 TraesCS6B01G124200 chr1D 90.523 707 52 5 2703 3399 245979509 245980210 0.000000e+00 920.0
23 TraesCS6B01G124200 chr1D 82.726 851 73 31 1345 2171 245973935 245974735 0.000000e+00 689.0
24 TraesCS6B01G124200 chr1D 92.527 281 21 0 3398 3678 245980181 245980461 2.620000e-108 403.0
25 TraesCS6B01G124200 chr1D 88.660 291 23 7 964 1244 245973632 245973922 4.480000e-91 346.0
26 TraesCS6B01G124200 chr1D 87.352 253 19 6 3692 3934 245980548 245980797 1.660000e-70 278.0
27 TraesCS6B01G124200 chr1B 85.871 1182 116 29 3931 5096 332157799 332156653 0.000000e+00 1210.0
28 TraesCS6B01G124200 chr1B 86.698 1060 86 25 2390 3402 332159474 332158423 0.000000e+00 1125.0
29 TraesCS6B01G124200 chr1B 85.181 857 81 22 1345 2171 332160798 332159958 0.000000e+00 837.0
30 TraesCS6B01G124200 chr1B 93.950 281 17 0 3398 3678 332158456 332158176 5.590000e-115 425.0
31 TraesCS6B01G124200 chr1B 87.031 293 28 7 962 1244 332161103 332160811 7.550000e-84 322.0
32 TraesCS6B01G124200 chr1B 87.008 254 20 6 3692 3935 332158088 332157838 2.140000e-69 274.0
33 TraesCS6B01G124200 chr1B 93.182 44 3 0 2168 2211 572526651 572526694 1.400000e-06 65.8
34 TraesCS6B01G124200 chr4D 90.526 95 6 2 1260 1353 437508980 437508888 8.210000e-24 122.0
35 TraesCS6B01G124200 chr4D 91.954 87 5 1 1260 1346 428390182 428390098 2.950000e-23 121.0
36 TraesCS6B01G124200 chr4D 95.238 42 2 0 2168 2209 32019445 32019486 3.900000e-07 67.6
37 TraesCS6B01G124200 chr4D 95.238 42 2 0 2168 2209 32019627 32019668 3.900000e-07 67.6
38 TraesCS6B01G124200 chr4A 92.045 88 5 1 1260 1347 95187472 95187557 8.210000e-24 122.0
39 TraesCS6B01G124200 chrUn 91.111 90 6 1 1260 1349 62690470 62690557 2.950000e-23 121.0
40 TraesCS6B01G124200 chr2B 88.889 99 9 1 1260 1358 478114460 478114364 2.950000e-23 121.0
41 TraesCS6B01G124200 chr7A 90.909 88 6 1 1260 1347 573673131 573673046 3.820000e-22 117.0
42 TraesCS6B01G124200 chr3D 90.110 91 6 2 1256 1346 184367608 184367695 1.370000e-21 115.0
43 TraesCS6B01G124200 chr5D 97.436 39 1 0 2171 2209 399614518 399614556 3.900000e-07 67.6
44 TraesCS6B01G124200 chr5B 97.436 39 1 0 2171 2209 479726831 479726869 3.900000e-07 67.6
45 TraesCS6B01G124200 chr5B 97.297 37 0 1 2168 2204 398074875 398074910 1.820000e-05 62.1
46 TraesCS6B01G124200 chr5A 97.297 37 0 1 2168 2204 439865950 439865985 1.820000e-05 62.1
47 TraesCS6B01G124200 chr3B 100.000 33 0 0 2172 2204 399973115 399973147 1.820000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G124200 chr6B 119124550 119130584 6034 False 11145.000000 11145 100.000000 1 6035 1 chr6B.!!$F1 6034
1 TraesCS6B01G124200 chr6D 52336090 52342132 6042 False 1592.800000 6636 93.885000 809 6035 5 chr6D.!!$F1 5226
2 TraesCS6B01G124200 chr6A 63115730 63121479 5749 False 1021.714286 5138 90.864857 204 5853 7 chr6A.!!$F2 5649
3 TraesCS6B01G124200 chr1A 306639429 306643879 4450 False 676.166667 1336 88.143667 964 5263 6 chr1A.!!$F1 4299
4 TraesCS6B01G124200 chr1D 245979509 245982159 2650 False 732.000000 1327 88.967000 2703 5263 4 chr1D.!!$F2 2560
5 TraesCS6B01G124200 chr1D 245973632 245974735 1103 False 517.500000 689 85.693000 964 2171 2 chr1D.!!$F1 1207
6 TraesCS6B01G124200 chr1B 332156653 332161103 4450 True 698.833333 1210 87.623167 962 5096 6 chr1B.!!$R1 4134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.035439 AAGTTACATGGTGCGAGGGG 60.035 55.000 0.00 0.0 0.00 4.79 F
187 188 0.179018 GGTTTCAGACCTGCCTGTGT 60.179 55.000 0.00 0.0 45.55 3.72 F
189 190 0.179020 TTTCAGACCTGCCTGTGTGG 60.179 55.000 0.92 0.0 35.71 4.17 F
1277 1634 0.192566 TTACTCCCTCCGCCCCATAT 59.807 55.000 0.00 0.0 0.00 1.78 F
1279 1636 0.192566 ACTCCCTCCGCCCCATATAA 59.807 55.000 0.00 0.0 0.00 0.98 F
1513 1872 0.839946 ACAGGTTGAGGAACTGTGCT 59.160 50.000 0.00 0.0 41.55 4.40 F
1785 2153 1.472026 GCCAAATGCCAAGAATGCGAT 60.472 47.619 0.00 0.0 0.00 4.58 F
3139 3897 1.620819 AGTCTTCTGATGTTCGTGCCT 59.379 47.619 0.00 0.0 0.00 4.75 F
3964 4873 1.130561 CATCGTCCGGCCTTCTTTTTC 59.869 52.381 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1615 0.192566 ATATGGGGCGGAGGGAGTAA 59.807 55.000 0.00 0.00 0.00 2.24 R
1260 1617 0.192566 TTATATGGGGCGGAGGGAGT 59.807 55.000 0.00 0.00 0.00 3.85 R
1293 1650 0.963225 TGGCGCTACACTAGTGTCAA 59.037 50.000 31.11 14.69 46.67 3.18 R
2813 3571 0.107017 ATCGGGGAACAGCAATGAGG 60.107 55.000 0.00 0.00 0.00 3.86 R
2896 3654 1.138266 GCTCATGCTGAATGCCCAAAT 59.862 47.619 0.00 0.00 42.00 2.32 R
3028 3786 2.370633 GGGAGGAGGAAGAGGCCT 59.629 66.667 3.86 3.86 42.17 5.19 R
3685 4444 0.312102 GTTCAGGCTGACCAACAAGC 59.688 55.000 18.55 0.00 39.06 4.01 R
4434 5351 2.695147 GGAGCAAGGAACATAATTGGGG 59.305 50.000 0.00 0.00 0.00 4.96 R
5327 6268 1.147153 CTCCCCTCCTCCAAATCGC 59.853 63.158 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.882671 AATCGATGAAGTTACATGGTGC 57.117 40.909 0.00 0.00 0.00 5.01
25 26 2.267426 TCGATGAAGTTACATGGTGCG 58.733 47.619 0.00 0.00 0.00 5.34
26 27 2.094442 TCGATGAAGTTACATGGTGCGA 60.094 45.455 0.00 0.00 0.00 5.10
27 28 2.282555 CGATGAAGTTACATGGTGCGAG 59.717 50.000 0.00 0.00 0.00 5.03
28 29 2.093306 TGAAGTTACATGGTGCGAGG 57.907 50.000 0.00 0.00 0.00 4.63
29 30 1.338674 TGAAGTTACATGGTGCGAGGG 60.339 52.381 0.00 0.00 0.00 4.30
30 31 0.035439 AAGTTACATGGTGCGAGGGG 60.035 55.000 0.00 0.00 0.00 4.79
31 32 0.907704 AGTTACATGGTGCGAGGGGA 60.908 55.000 0.00 0.00 0.00 4.81
32 33 0.462047 GTTACATGGTGCGAGGGGAG 60.462 60.000 0.00 0.00 0.00 4.30
33 34 1.622607 TTACATGGTGCGAGGGGAGG 61.623 60.000 0.00 0.00 0.00 4.30
34 35 2.523740 TACATGGTGCGAGGGGAGGA 62.524 60.000 0.00 0.00 0.00 3.71
35 36 2.040464 ATGGTGCGAGGGGAGGAT 60.040 61.111 0.00 0.00 0.00 3.24
36 37 2.143419 ATGGTGCGAGGGGAGGATC 61.143 63.158 0.00 0.00 0.00 3.36
37 38 2.764128 GGTGCGAGGGGAGGATCA 60.764 66.667 0.00 0.00 36.25 2.92
38 39 2.801631 GGTGCGAGGGGAGGATCAG 61.802 68.421 0.00 0.00 36.25 2.90
39 40 2.060980 GTGCGAGGGGAGGATCAGT 61.061 63.158 0.00 0.00 36.25 3.41
40 41 1.306141 TGCGAGGGGAGGATCAGTT 60.306 57.895 0.00 0.00 36.25 3.16
41 42 1.144936 GCGAGGGGAGGATCAGTTG 59.855 63.158 0.00 0.00 36.25 3.16
42 43 1.330655 GCGAGGGGAGGATCAGTTGA 61.331 60.000 0.00 0.00 36.25 3.18
43 44 0.461961 CGAGGGGAGGATCAGTTGAC 59.538 60.000 0.00 0.00 36.25 3.18
44 45 1.872773 GAGGGGAGGATCAGTTGACT 58.127 55.000 0.00 0.00 36.25 3.41
45 46 2.687014 CGAGGGGAGGATCAGTTGACTA 60.687 54.545 0.00 0.00 36.25 2.59
46 47 3.375699 GAGGGGAGGATCAGTTGACTAA 58.624 50.000 0.00 0.00 36.25 2.24
47 48 3.775316 GAGGGGAGGATCAGTTGACTAAA 59.225 47.826 0.00 0.00 36.25 1.85
48 49 4.175962 AGGGGAGGATCAGTTGACTAAAA 58.824 43.478 0.00 0.00 36.25 1.52
49 50 4.790790 AGGGGAGGATCAGTTGACTAAAAT 59.209 41.667 0.00 0.00 36.25 1.82
50 51 5.254032 AGGGGAGGATCAGTTGACTAAAATT 59.746 40.000 0.00 0.00 36.25 1.82
51 52 5.952347 GGGGAGGATCAGTTGACTAAAATTT 59.048 40.000 0.00 0.00 36.25 1.82
52 53 6.095580 GGGGAGGATCAGTTGACTAAAATTTC 59.904 42.308 0.00 0.00 36.25 2.17
53 54 6.887002 GGGAGGATCAGTTGACTAAAATTTCT 59.113 38.462 0.00 0.00 36.25 2.52
54 55 7.148171 GGGAGGATCAGTTGACTAAAATTTCTG 60.148 40.741 0.00 0.00 36.25 3.02
55 56 7.150783 AGGATCAGTTGACTAAAATTTCTGC 57.849 36.000 0.00 0.00 0.00 4.26
56 57 6.151817 AGGATCAGTTGACTAAAATTTCTGCC 59.848 38.462 0.00 0.00 0.00 4.85
57 58 6.151817 GGATCAGTTGACTAAAATTTCTGCCT 59.848 38.462 0.00 0.00 0.00 4.75
58 59 6.317789 TCAGTTGACTAAAATTTCTGCCTG 57.682 37.500 0.00 0.00 0.00 4.85
59 60 6.061441 TCAGTTGACTAAAATTTCTGCCTGA 58.939 36.000 0.00 0.00 0.00 3.86
60 61 6.017109 TCAGTTGACTAAAATTTCTGCCTGAC 60.017 38.462 0.00 0.00 0.00 3.51
61 62 6.016777 CAGTTGACTAAAATTTCTGCCTGACT 60.017 38.462 0.00 0.00 0.00 3.41
62 63 5.947228 TGACTAAAATTTCTGCCTGACTG 57.053 39.130 0.00 0.00 0.00 3.51
63 64 4.761739 TGACTAAAATTTCTGCCTGACTGG 59.238 41.667 0.00 0.00 39.35 4.00
64 65 4.985538 ACTAAAATTTCTGCCTGACTGGA 58.014 39.130 1.91 0.00 38.35 3.86
65 66 5.385198 ACTAAAATTTCTGCCTGACTGGAA 58.615 37.500 1.91 0.00 38.35 3.53
66 67 5.833131 ACTAAAATTTCTGCCTGACTGGAAA 59.167 36.000 1.91 0.00 38.35 3.13
67 68 5.813513 AAAATTTCTGCCTGACTGGAAAT 57.186 34.783 1.91 0.00 39.22 2.17
68 69 4.796038 AATTTCTGCCTGACTGGAAATG 57.204 40.909 1.91 0.00 38.09 2.32
69 70 3.507162 TTTCTGCCTGACTGGAAATGA 57.493 42.857 1.91 0.00 38.35 2.57
70 71 3.507162 TTCTGCCTGACTGGAAATGAA 57.493 42.857 1.91 0.00 38.35 2.57
71 72 3.726557 TCTGCCTGACTGGAAATGAAT 57.273 42.857 1.91 0.00 38.35 2.57
72 73 3.349927 TCTGCCTGACTGGAAATGAATG 58.650 45.455 1.91 0.00 38.35 2.67
73 74 1.820519 TGCCTGACTGGAAATGAATGC 59.179 47.619 1.91 0.00 38.35 3.56
74 75 2.097825 GCCTGACTGGAAATGAATGCT 58.902 47.619 1.91 0.00 38.35 3.79
75 76 3.282021 GCCTGACTGGAAATGAATGCTA 58.718 45.455 1.91 0.00 38.35 3.49
76 77 3.065925 GCCTGACTGGAAATGAATGCTAC 59.934 47.826 1.91 0.00 38.35 3.58
77 78 4.521146 CCTGACTGGAAATGAATGCTACT 58.479 43.478 0.00 0.00 38.35 2.57
78 79 4.946157 CCTGACTGGAAATGAATGCTACTT 59.054 41.667 0.00 0.00 38.35 2.24
79 80 6.115446 CCTGACTGGAAATGAATGCTACTTA 58.885 40.000 0.00 0.00 38.35 2.24
80 81 6.769822 CCTGACTGGAAATGAATGCTACTTAT 59.230 38.462 0.00 0.00 38.35 1.73
81 82 7.041508 CCTGACTGGAAATGAATGCTACTTATC 60.042 40.741 0.00 0.00 38.35 1.75
82 83 7.568349 TGACTGGAAATGAATGCTACTTATCT 58.432 34.615 0.00 0.00 0.00 1.98
83 84 8.049117 TGACTGGAAATGAATGCTACTTATCTT 58.951 33.333 0.00 0.00 0.00 2.40
84 85 8.814038 ACTGGAAATGAATGCTACTTATCTTT 57.186 30.769 0.00 0.00 0.00 2.52
85 86 9.247861 ACTGGAAATGAATGCTACTTATCTTTT 57.752 29.630 0.00 0.00 0.00 2.27
109 110 6.503589 AAGTAGTATAGAGATTGCTAGCCG 57.496 41.667 13.29 0.00 0.00 5.52
110 111 4.944930 AGTAGTATAGAGATTGCTAGCCGG 59.055 45.833 13.29 0.00 0.00 6.13
111 112 4.035612 AGTATAGAGATTGCTAGCCGGA 57.964 45.455 13.29 0.00 0.00 5.14
112 113 4.605183 AGTATAGAGATTGCTAGCCGGAT 58.395 43.478 13.29 0.00 0.00 4.18
113 114 5.756918 AGTATAGAGATTGCTAGCCGGATA 58.243 41.667 13.29 0.50 0.00 2.59
114 115 6.188407 AGTATAGAGATTGCTAGCCGGATAA 58.812 40.000 13.29 0.00 0.00 1.75
115 116 6.663953 AGTATAGAGATTGCTAGCCGGATAAA 59.336 38.462 13.29 0.00 0.00 1.40
116 117 4.689612 AGAGATTGCTAGCCGGATAAAA 57.310 40.909 13.29 0.35 0.00 1.52
117 118 5.234466 AGAGATTGCTAGCCGGATAAAAT 57.766 39.130 13.29 6.30 0.00 1.82
118 119 4.999950 AGAGATTGCTAGCCGGATAAAATG 59.000 41.667 13.29 0.00 0.00 2.32
119 120 4.074970 AGATTGCTAGCCGGATAAAATGG 58.925 43.478 13.29 0.00 0.00 3.16
124 125 1.363807 GCCGGATAAAATGGCCTGC 59.636 57.895 5.05 0.00 43.06 4.85
125 126 1.391157 GCCGGATAAAATGGCCTGCA 61.391 55.000 5.05 0.00 43.06 4.41
126 127 1.110442 CCGGATAAAATGGCCTGCAA 58.890 50.000 3.32 0.00 0.00 4.08
127 128 1.480137 CCGGATAAAATGGCCTGCAAA 59.520 47.619 3.32 0.00 0.00 3.68
128 129 2.102925 CCGGATAAAATGGCCTGCAAAT 59.897 45.455 3.32 0.00 0.00 2.32
129 130 3.383761 CGGATAAAATGGCCTGCAAATC 58.616 45.455 3.32 1.76 0.00 2.17
130 131 3.181477 CGGATAAAATGGCCTGCAAATCA 60.181 43.478 3.32 0.00 0.00 2.57
131 132 4.374399 GGATAAAATGGCCTGCAAATCAG 58.626 43.478 3.32 0.00 42.49 2.90
132 133 4.099881 GGATAAAATGGCCTGCAAATCAGA 59.900 41.667 3.32 0.00 45.72 3.27
133 134 5.221581 GGATAAAATGGCCTGCAAATCAGAT 60.222 40.000 3.32 0.00 45.72 2.90
134 135 4.563140 AAAATGGCCTGCAAATCAGATT 57.437 36.364 3.32 0.00 45.72 2.40
135 136 4.563140 AAATGGCCTGCAAATCAGATTT 57.437 36.364 3.32 2.20 45.72 2.17
136 137 4.563140 AATGGCCTGCAAATCAGATTTT 57.437 36.364 3.32 0.00 45.72 1.82
137 138 4.563140 ATGGCCTGCAAATCAGATTTTT 57.437 36.364 3.32 0.00 45.72 1.94
138 139 5.680594 ATGGCCTGCAAATCAGATTTTTA 57.319 34.783 3.32 0.00 45.72 1.52
139 140 5.480642 TGGCCTGCAAATCAGATTTTTAA 57.519 34.783 3.32 0.00 45.72 1.52
140 141 5.481105 TGGCCTGCAAATCAGATTTTTAAG 58.519 37.500 3.32 4.37 45.72 1.85
141 142 5.245751 TGGCCTGCAAATCAGATTTTTAAGA 59.754 36.000 3.32 0.00 45.72 2.10
142 143 5.578336 GGCCTGCAAATCAGATTTTTAAGAC 59.422 40.000 5.58 0.00 45.72 3.01
143 144 5.287035 GCCTGCAAATCAGATTTTTAAGACG 59.713 40.000 5.58 0.00 45.72 4.18
144 145 6.611381 CCTGCAAATCAGATTTTTAAGACGA 58.389 36.000 5.58 0.00 45.72 4.20
145 146 7.253422 CCTGCAAATCAGATTTTTAAGACGAT 58.747 34.615 5.58 0.00 45.72 3.73
146 147 7.219535 CCTGCAAATCAGATTTTTAAGACGATG 59.780 37.037 5.58 0.00 45.72 3.84
147 148 7.592938 TGCAAATCAGATTTTTAAGACGATGT 58.407 30.769 5.58 0.00 0.00 3.06
148 149 7.538334 TGCAAATCAGATTTTTAAGACGATGTG 59.462 33.333 5.58 0.00 0.00 3.21
149 150 7.461938 GCAAATCAGATTTTTAAGACGATGTGC 60.462 37.037 5.58 0.00 35.98 4.57
150 151 6.741992 ATCAGATTTTTAAGACGATGTGCA 57.258 33.333 0.00 0.00 0.00 4.57
151 152 6.552859 TCAGATTTTTAAGACGATGTGCAA 57.447 33.333 0.00 0.00 0.00 4.08
152 153 6.602179 TCAGATTTTTAAGACGATGTGCAAG 58.398 36.000 0.00 0.00 0.00 4.01
153 154 6.204688 TCAGATTTTTAAGACGATGTGCAAGT 59.795 34.615 0.00 0.00 0.00 3.16
154 155 7.386573 TCAGATTTTTAAGACGATGTGCAAGTA 59.613 33.333 0.00 0.00 0.00 2.24
155 156 8.015087 CAGATTTTTAAGACGATGTGCAAGTAA 58.985 33.333 0.00 0.00 0.00 2.24
156 157 8.230486 AGATTTTTAAGACGATGTGCAAGTAAG 58.770 33.333 0.00 0.00 0.00 2.34
157 158 6.854496 TTTTAAGACGATGTGCAAGTAAGT 57.146 33.333 0.00 0.00 0.00 2.24
158 159 6.854496 TTTAAGACGATGTGCAAGTAAGTT 57.146 33.333 0.00 0.00 0.00 2.66
159 160 4.732285 AAGACGATGTGCAAGTAAGTTG 57.268 40.909 0.00 0.00 39.41 3.16
171 172 5.695851 CAAGTAAGTTGCTTCATCTGGTT 57.304 39.130 2.90 0.00 0.00 3.67
172 173 6.076981 CAAGTAAGTTGCTTCATCTGGTTT 57.923 37.500 2.90 0.00 0.00 3.27
173 174 5.948992 AGTAAGTTGCTTCATCTGGTTTC 57.051 39.130 0.00 0.00 0.00 2.78
174 175 5.376625 AGTAAGTTGCTTCATCTGGTTTCA 58.623 37.500 0.00 0.00 0.00 2.69
175 176 4.843220 AAGTTGCTTCATCTGGTTTCAG 57.157 40.909 0.00 0.00 42.21 3.02
186 187 2.633860 GGTTTCAGACCTGCCTGTG 58.366 57.895 0.00 0.00 45.55 3.66
187 188 0.179018 GGTTTCAGACCTGCCTGTGT 60.179 55.000 0.00 0.00 45.55 3.72
188 189 0.947244 GTTTCAGACCTGCCTGTGTG 59.053 55.000 0.00 0.00 35.71 3.82
189 190 0.179020 TTTCAGACCTGCCTGTGTGG 60.179 55.000 0.92 0.00 35.71 4.17
216 217 5.174395 GCGGCTCTGAGTTCATCATATAAT 58.826 41.667 6.53 0.00 37.28 1.28
510 519 7.644986 TTTTTGGCCGTATATTGACAAAAAG 57.355 32.000 19.22 0.00 40.62 2.27
511 520 4.974368 TGGCCGTATATTGACAAAAAGG 57.026 40.909 0.00 0.00 0.00 3.11
527 536 9.562408 TGACAAAAAGGTTCACAGTATATTACA 57.438 29.630 0.00 0.00 0.00 2.41
584 594 8.848474 TCGAAAGAAGAACTAAAATCTGGAAT 57.152 30.769 0.00 0.00 37.03 3.01
601 611 9.447157 AATCTGGAATGAGAAAAACAAAACAAA 57.553 25.926 0.00 0.00 0.00 2.83
602 612 8.839310 TCTGGAATGAGAAAAACAAAACAAAA 57.161 26.923 0.00 0.00 0.00 2.44
636 646 6.945435 TCAAATCAAAATAGCTGTTACCTGGA 59.055 34.615 0.00 0.00 0.00 3.86
671 720 1.594862 GCGTCATGCAGGAGTTATCAC 59.405 52.381 0.00 0.00 45.45 3.06
679 728 2.893637 CAGGAGTTATCACCTGGTTCG 58.106 52.381 8.89 0.00 44.74 3.95
705 754 1.040646 AGTCAACGACCAGAAGCAGA 58.959 50.000 0.00 0.00 32.18 4.26
708 757 0.861837 CAACGACCAGAAGCAGACAC 59.138 55.000 0.00 0.00 0.00 3.67
709 758 0.597637 AACGACCAGAAGCAGACACG 60.598 55.000 0.00 0.00 0.00 4.49
716 765 1.528586 CAGAAGCAGACACGAAACCAG 59.471 52.381 0.00 0.00 0.00 4.00
717 766 1.412710 AGAAGCAGACACGAAACCAGA 59.587 47.619 0.00 0.00 0.00 3.86
718 767 1.795286 GAAGCAGACACGAAACCAGAG 59.205 52.381 0.00 0.00 0.00 3.35
719 768 0.601311 AGCAGACACGAAACCAGAGC 60.601 55.000 0.00 0.00 0.00 4.09
720 769 1.891060 GCAGACACGAAACCAGAGCG 61.891 60.000 0.00 0.00 0.00 5.03
721 770 1.006102 AGACACGAAACCAGAGCGG 60.006 57.895 0.00 0.00 42.50 5.52
722 771 1.006571 GACACGAAACCAGAGCGGA 60.007 57.895 0.00 0.00 38.63 5.54
723 772 0.389948 GACACGAAACCAGAGCGGAT 60.390 55.000 0.00 0.00 38.63 4.18
747 796 4.473520 CGCTTCCACCTCGCCCAT 62.474 66.667 0.00 0.00 0.00 4.00
756 805 2.126071 CTCGCCCATTCGTCGTGT 60.126 61.111 0.00 0.00 0.00 4.49
760 809 1.131826 GCCCATTCGTCGTGTTTCG 59.868 57.895 0.00 0.00 41.41 3.46
792 841 1.289380 GCTTGTTCTCCCGACGTCT 59.711 57.895 14.70 0.00 0.00 4.18
841 890 0.544697 CCCGTACCCTGTAGGCAAAT 59.455 55.000 0.00 0.00 40.58 2.32
896 945 3.483869 GGGCCCAGCTTCTCCGAT 61.484 66.667 19.95 0.00 0.00 4.18
897 946 2.203126 GGCCCAGCTTCTCCGATG 60.203 66.667 0.00 0.00 0.00 3.84
898 947 2.203126 GCCCAGCTTCTCCGATGG 60.203 66.667 0.00 0.00 40.10 3.51
899 948 2.735772 GCCCAGCTTCTCCGATGGA 61.736 63.158 0.00 0.00 42.97 3.41
924 973 8.546597 AGACATACCAACATTTTATTTTTGGC 57.453 30.769 0.00 0.00 42.02 4.52
925 974 7.606073 AGACATACCAACATTTTATTTTTGGCC 59.394 33.333 0.00 0.00 42.02 5.36
926 975 6.657117 ACATACCAACATTTTATTTTTGGCCC 59.343 34.615 0.00 0.00 42.02 5.80
927 976 4.068599 ACCAACATTTTATTTTTGGCCCG 58.931 39.130 0.00 0.00 42.02 6.13
928 977 4.068599 CCAACATTTTATTTTTGGCCCGT 58.931 39.130 0.00 0.00 32.51 5.28
929 978 4.083590 CCAACATTTTATTTTTGGCCCGTG 60.084 41.667 0.00 0.00 32.51 4.94
930 979 4.608948 ACATTTTATTTTTGGCCCGTGA 57.391 36.364 0.00 0.00 0.00 4.35
1051 1386 4.812476 TGCCCGCGAATGTCTCCG 62.812 66.667 8.23 0.00 0.00 4.63
1207 1560 1.373435 CCCTGCGGTGGAAAGTACA 59.627 57.895 0.00 0.00 0.00 2.90
1221 1574 0.905337 AGTACACACCTCCTCCCTGC 60.905 60.000 0.00 0.00 0.00 4.85
1244 1601 2.172505 TGTCACTCCTGCTTTCTTTGGA 59.827 45.455 0.00 0.00 0.00 3.53
1254 1611 6.613271 TCCTGCTTTCTTTGGATCTACTCTAT 59.387 38.462 0.00 0.00 0.00 1.98
1255 1612 7.785028 TCCTGCTTTCTTTGGATCTACTCTATA 59.215 37.037 0.00 0.00 0.00 1.31
1256 1613 8.592809 CCTGCTTTCTTTGGATCTACTCTATAT 58.407 37.037 0.00 0.00 0.00 0.86
1257 1614 9.421806 CTGCTTTCTTTGGATCTACTCTATATG 57.578 37.037 0.00 0.00 0.00 1.78
1258 1615 8.928448 TGCTTTCTTTGGATCTACTCTATATGT 58.072 33.333 0.00 0.00 0.00 2.29
1265 1622 8.880991 TTGGATCTACTCTATATGTTACTCCC 57.119 38.462 0.00 0.00 0.00 4.30
1266 1623 8.233349 TGGATCTACTCTATATGTTACTCCCT 57.767 38.462 0.00 0.00 0.00 4.20
1267 1624 8.330247 TGGATCTACTCTATATGTTACTCCCTC 58.670 40.741 0.00 0.00 0.00 4.30
1268 1625 7.776500 GGATCTACTCTATATGTTACTCCCTCC 59.224 44.444 0.00 0.00 0.00 4.30
1269 1626 6.709281 TCTACTCTATATGTTACTCCCTCCG 58.291 44.000 0.00 0.00 0.00 4.63
1270 1627 4.080687 ACTCTATATGTTACTCCCTCCGC 58.919 47.826 0.00 0.00 0.00 5.54
1271 1628 3.428532 TCTATATGTTACTCCCTCCGCC 58.571 50.000 0.00 0.00 0.00 6.13
1272 1629 1.349067 ATATGTTACTCCCTCCGCCC 58.651 55.000 0.00 0.00 0.00 6.13
1273 1630 0.761702 TATGTTACTCCCTCCGCCCC 60.762 60.000 0.00 0.00 0.00 5.80
1274 1631 2.686106 GTTACTCCCTCCGCCCCA 60.686 66.667 0.00 0.00 0.00 4.96
1275 1632 2.070650 GTTACTCCCTCCGCCCCAT 61.071 63.158 0.00 0.00 0.00 4.00
1276 1633 0.761702 GTTACTCCCTCCGCCCCATA 60.762 60.000 0.00 0.00 0.00 2.74
1277 1634 0.192566 TTACTCCCTCCGCCCCATAT 59.807 55.000 0.00 0.00 0.00 1.78
1278 1635 1.086565 TACTCCCTCCGCCCCATATA 58.913 55.000 0.00 0.00 0.00 0.86
1279 1636 0.192566 ACTCCCTCCGCCCCATATAA 59.807 55.000 0.00 0.00 0.00 0.98
1280 1637 1.203440 ACTCCCTCCGCCCCATATAAT 60.203 52.381 0.00 0.00 0.00 1.28
1281 1638 2.045326 ACTCCCTCCGCCCCATATAATA 59.955 50.000 0.00 0.00 0.00 0.98
1282 1639 3.311402 ACTCCCTCCGCCCCATATAATAT 60.311 47.826 0.00 0.00 0.00 1.28
1283 1640 4.078219 ACTCCCTCCGCCCCATATAATATA 60.078 45.833 0.00 0.00 0.00 0.86
1284 1641 4.489737 TCCCTCCGCCCCATATAATATAG 58.510 47.826 0.00 0.00 0.00 1.31
1285 1642 3.583086 CCCTCCGCCCCATATAATATAGG 59.417 52.174 0.00 0.00 0.00 2.57
1286 1643 4.489737 CCTCCGCCCCATATAATATAGGA 58.510 47.826 0.00 0.00 0.00 2.94
1287 1644 4.283722 CCTCCGCCCCATATAATATAGGAC 59.716 50.000 0.00 0.00 0.00 3.85
1288 1645 3.893200 TCCGCCCCATATAATATAGGACG 59.107 47.826 0.00 0.00 0.00 4.79
1289 1646 3.640029 CCGCCCCATATAATATAGGACGT 59.360 47.826 0.00 0.00 0.00 4.34
1290 1647 4.100498 CCGCCCCATATAATATAGGACGTT 59.900 45.833 0.00 0.00 0.00 3.99
1291 1648 5.395990 CCGCCCCATATAATATAGGACGTTT 60.396 44.000 0.00 0.00 0.00 3.60
1292 1649 6.110707 CGCCCCATATAATATAGGACGTTTT 58.889 40.000 0.00 0.00 0.00 2.43
1293 1650 6.596497 CGCCCCATATAATATAGGACGTTTTT 59.404 38.462 0.00 0.00 0.00 1.94
1311 1668 2.074547 TTTGACACTAGTGTAGCGCC 57.925 50.000 27.98 15.61 45.05 6.53
1312 1669 0.963225 TTGACACTAGTGTAGCGCCA 59.037 50.000 27.98 17.99 45.05 5.69
1313 1670 0.963225 TGACACTAGTGTAGCGCCAA 59.037 50.000 27.98 5.89 45.05 4.52
1314 1671 1.341852 TGACACTAGTGTAGCGCCAAA 59.658 47.619 27.98 4.57 45.05 3.28
1315 1672 2.224090 TGACACTAGTGTAGCGCCAAAA 60.224 45.455 27.98 3.58 45.05 2.44
1316 1673 2.803956 GACACTAGTGTAGCGCCAAAAA 59.196 45.455 27.98 0.00 45.05 1.94
1341 1698 4.872664 GTCTTACATTATGAGACCGAGGG 58.127 47.826 0.00 0.00 37.86 4.30
1342 1699 4.583489 GTCTTACATTATGAGACCGAGGGA 59.417 45.833 0.00 0.00 37.86 4.20
1343 1700 4.827835 TCTTACATTATGAGACCGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
1354 1712 4.154942 AGACCGAGGGAGTAACTGTTTTA 58.845 43.478 0.00 0.00 0.00 1.52
1356 1714 4.635223 ACCGAGGGAGTAACTGTTTTAAC 58.365 43.478 0.00 0.00 0.00 2.01
1449 1807 1.552578 TGTCTGCTCGCCTAGGTAAA 58.447 50.000 11.31 0.00 0.00 2.01
1450 1808 2.108168 TGTCTGCTCGCCTAGGTAAAT 58.892 47.619 11.31 0.00 0.00 1.40
1513 1872 0.839946 ACAGGTTGAGGAACTGTGCT 59.160 50.000 0.00 0.00 41.55 4.40
1609 1968 4.034510 GCATACGCTCTGCTTGATTACTTT 59.965 41.667 0.00 0.00 36.68 2.66
1613 1972 5.238583 ACGCTCTGCTTGATTACTTTTACT 58.761 37.500 0.00 0.00 0.00 2.24
1673 2032 6.368791 TGTCTCCGTGATCTTAATTTTGTGAG 59.631 38.462 0.00 0.00 0.00 3.51
1694 2062 9.383519 TGTGAGTATCTGTCCTTCATTATTTTC 57.616 33.333 0.00 0.00 34.92 2.29
1695 2063 8.543774 GTGAGTATCTGTCCTTCATTATTTTCG 58.456 37.037 0.00 0.00 34.92 3.46
1785 2153 1.472026 GCCAAATGCCAAGAATGCGAT 60.472 47.619 0.00 0.00 0.00 4.58
1787 2155 2.466846 CAAATGCCAAGAATGCGATCC 58.533 47.619 0.00 0.00 0.00 3.36
2007 2398 6.382869 AGCCATTTCATGTAGCTAATTGAC 57.617 37.500 0.00 0.00 30.46 3.18
2012 2403 7.859377 CCATTTCATGTAGCTAATTGACATGTC 59.141 37.037 19.27 19.27 46.82 3.06
2088 2479 5.587289 ACTGAAGATGCGAACTTCTATCTC 58.413 41.667 14.87 2.99 42.63 2.75
2111 2502 6.994221 TCCAACTTCACCTTTGTTTTTGTAA 58.006 32.000 0.00 0.00 0.00 2.41
2145 2536 7.716799 TTTCTAAAATGTAAGGCATCCACAT 57.283 32.000 0.00 0.00 36.67 3.21
2178 2569 5.845391 TTAGTTTGACCAAGAAAAGGGTG 57.155 39.130 0.00 0.00 37.57 4.61
2219 2610 2.404215 CACACGAGGTAGTTTGACCAG 58.596 52.381 0.00 0.00 42.47 4.00
2237 2628 4.080687 ACCAGGAGCTAGACCGATAATAC 58.919 47.826 0.00 0.00 0.00 1.89
2261 2652 5.681105 CGTTAGTTCTGTGACACAAAAATGG 59.319 40.000 10.02 0.00 0.00 3.16
2312 2703 2.759535 TCATGCCACATAACCCACATTG 59.240 45.455 0.00 0.00 0.00 2.82
2386 3071 4.851639 ATCAAGAAGCAGGGAGTACAAT 57.148 40.909 0.00 0.00 0.00 2.71
2387 3072 5.957771 ATCAAGAAGCAGGGAGTACAATA 57.042 39.130 0.00 0.00 0.00 1.90
2388 3073 5.086104 TCAAGAAGCAGGGAGTACAATAC 57.914 43.478 0.00 0.00 0.00 1.89
2482 3197 6.091713 GCGAAGTTAGTAGCTCAATTTACCAA 59.908 38.462 0.00 0.00 0.00 3.67
2569 3289 4.590487 TCCAATCGGAAGTGACGC 57.410 55.556 0.00 0.00 38.83 5.19
2597 3317 3.219281 TCTAGCAAACCACTTCCAAACC 58.781 45.455 0.00 0.00 0.00 3.27
2617 3337 8.917088 CCAAACCATGAAGTTTTATATCCTGAT 58.083 33.333 0.00 0.00 37.87 2.90
2636 3356 4.366586 TGATCGAGATGCAATTCTGACTC 58.633 43.478 0.00 0.00 0.00 3.36
2724 3466 2.121948 TCATGCTGGCAGTCCTAATCT 58.878 47.619 17.16 0.00 0.00 2.40
2759 3508 4.157105 TGACAATGTGGATCATGCTCTTTG 59.843 41.667 0.00 5.60 36.81 2.77
2822 3580 2.957402 TTGTCAACTCCCTCATTGCT 57.043 45.000 0.00 0.00 0.00 3.91
2896 3654 6.934056 ACTGATACAATTTGCAAGGCATTAA 58.066 32.000 0.00 0.00 38.76 1.40
3028 3786 3.248024 ACTCCACCTCTACCATCACAAA 58.752 45.455 0.00 0.00 0.00 2.83
3056 3814 3.208592 TCCTCCCCCTCCACCACT 61.209 66.667 0.00 0.00 0.00 4.00
3139 3897 1.620819 AGTCTTCTGATGTTCGTGCCT 59.379 47.619 0.00 0.00 0.00 4.75
3169 3927 9.950680 CTTGTGTTTGTATCTTTCAGTTTGTAT 57.049 29.630 0.00 0.00 0.00 2.29
3685 4444 5.571741 GTCATTTGCAGAGACATTGTGATTG 59.428 40.000 9.52 0.00 32.68 2.67
3709 4542 2.158623 TGTTGGTCAGCCTGAACATCTT 60.159 45.455 14.25 0.00 44.54 2.40
3948 4857 7.597743 TGACAATGATCAGAATAGACATCATCG 59.402 37.037 0.09 0.00 35.37 3.84
3964 4873 1.130561 CATCGTCCGGCCTTCTTTTTC 59.869 52.381 0.00 0.00 0.00 2.29
3970 4881 3.566742 GTCCGGCCTTCTTTTTCTTTACA 59.433 43.478 0.00 0.00 0.00 2.41
4001 4912 2.340337 GGCAAATGCTGATTTTTCGCT 58.660 42.857 5.25 0.00 41.70 4.93
4043 4955 9.855021 ATTTCCCTTCTGTTTATTGAAATAACG 57.145 29.630 0.00 0.00 31.30 3.18
4075 4987 9.459640 CAATCTAATTATGTTTTGATGCCTCAG 57.540 33.333 0.00 0.00 31.68 3.35
4213 5125 2.608988 ACCCAGGGAGGCTGAGTG 60.609 66.667 14.54 0.00 35.39 3.51
4396 5311 3.029320 TGTTTTGCTTGTGCCATGATC 57.971 42.857 0.00 0.00 38.71 2.92
4403 5320 4.208746 TGCTTGTGCCATGATCATGATAA 58.791 39.130 32.71 18.45 37.82 1.75
4404 5321 4.645588 TGCTTGTGCCATGATCATGATAAA 59.354 37.500 32.71 19.99 37.82 1.40
4405 5322 5.127356 TGCTTGTGCCATGATCATGATAAAA 59.873 36.000 32.71 20.78 37.82 1.52
4491 5408 5.056480 TCATGGCGAACATTATCGAGAAAT 58.944 37.500 0.00 0.00 45.48 2.17
4524 5441 9.720769 TTTGTTTTTGGACCACATTAAAAAGTA 57.279 25.926 0.00 0.00 34.01 2.24
4534 5451 6.042143 CCACATTAAAAAGTATGCCACCATC 58.958 40.000 0.00 0.00 32.85 3.51
5077 6010 7.805071 CGATTCTGATTTTCTGTAAAGCTGTTT 59.195 33.333 0.00 0.00 34.10 2.83
5101 6035 1.544724 TAGCAACCAAGATTGTGGGC 58.455 50.000 0.00 0.00 43.56 5.36
5123 6059 1.180456 TTTGTGCTGGTGCCCATGAG 61.180 55.000 0.00 0.00 38.71 2.90
5137 6074 4.021544 TGCCCATGAGTTGTTAAATTCCAC 60.022 41.667 0.00 0.00 0.00 4.02
5207 6144 0.096454 GCATTGGTTACTTCGGTCGC 59.904 55.000 0.00 0.00 0.00 5.19
5209 6146 1.659098 CATTGGTTACTTCGGTCGCTC 59.341 52.381 0.00 0.00 0.00 5.03
5213 6150 0.243095 GTTACTTCGGTCGCTCACCT 59.757 55.000 0.63 0.00 44.21 4.00
5217 6156 1.549170 ACTTCGGTCGCTCACCTTATT 59.451 47.619 0.63 0.00 44.21 1.40
5263 6202 9.911788 ATGAGAACAAATTCTGTACCATTCTAT 57.088 29.630 0.00 0.00 45.60 1.98
5327 6268 4.760530 TCTCAGATCAATAACACTGGGG 57.239 45.455 0.00 0.00 32.46 4.96
5341 6282 2.193248 GGGGCGATTTGGAGGAGG 59.807 66.667 0.00 0.00 0.00 4.30
5344 6285 2.375345 GGCGATTTGGAGGAGGGGA 61.375 63.158 0.00 0.00 0.00 4.81
5374 6315 1.594862 GATGAGAACGATTTGGAGCGG 59.405 52.381 0.00 0.00 39.39 5.52
5395 6336 3.146104 CCTTTATGGCCATAGAGGGTG 57.854 52.381 38.16 22.33 40.25 4.61
5464 6405 4.037222 TGGAGTAGAGCCCACATATTCAA 58.963 43.478 0.00 0.00 0.00 2.69
5480 6421 9.388506 CACATATTCAAGTCTGTTCTTATCCTT 57.611 33.333 0.00 0.00 0.00 3.36
5624 6607 2.290323 CCACTTCCTCCTCATCGGTTTT 60.290 50.000 0.00 0.00 0.00 2.43
5628 6611 1.974957 TCCTCCTCATCGGTTTTGACA 59.025 47.619 0.00 0.00 0.00 3.58
5685 6668 1.815421 CGTCCTCCCATTTCGCCAG 60.815 63.158 0.00 0.00 0.00 4.85
5894 7446 3.366052 TCCTTTTGCCTTCCTACCATC 57.634 47.619 0.00 0.00 0.00 3.51
5961 7513 1.624487 CACGTAACACTGAGCGCATA 58.376 50.000 11.47 0.00 0.00 3.14
5990 7542 6.459066 TCAGAAGTGAATACTGTCCTCTTTG 58.541 40.000 0.00 0.00 37.19 2.77
5993 7545 3.584848 AGTGAATACTGTCCTCTTTGCCT 59.415 43.478 0.00 0.00 35.34 4.75
6025 7577 0.538287 GCTCAGCCCCAAAGAACTGT 60.538 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.739161 GCACCATGTAACTTCATCGATTTTC 59.261 40.000 0.00 0.00 0.00 2.29
1 2 5.640732 GCACCATGTAACTTCATCGATTTT 58.359 37.500 0.00 0.00 0.00 1.82
2 3 4.201812 CGCACCATGTAACTTCATCGATTT 60.202 41.667 0.00 0.00 0.00 2.17
3 4 3.309682 CGCACCATGTAACTTCATCGATT 59.690 43.478 0.00 0.00 0.00 3.34
4 5 2.866156 CGCACCATGTAACTTCATCGAT 59.134 45.455 0.00 0.00 0.00 3.59
5 6 2.094442 TCGCACCATGTAACTTCATCGA 60.094 45.455 0.00 0.00 0.00 3.59
6 7 2.267426 TCGCACCATGTAACTTCATCG 58.733 47.619 0.00 0.00 0.00 3.84
7 8 2.609459 CCTCGCACCATGTAACTTCATC 59.391 50.000 0.00 0.00 0.00 2.92
8 9 2.632377 CCTCGCACCATGTAACTTCAT 58.368 47.619 0.00 0.00 0.00 2.57
9 10 1.338674 CCCTCGCACCATGTAACTTCA 60.339 52.381 0.00 0.00 0.00 3.02
10 11 1.369625 CCCTCGCACCATGTAACTTC 58.630 55.000 0.00 0.00 0.00 3.01
11 12 0.035439 CCCCTCGCACCATGTAACTT 60.035 55.000 0.00 0.00 0.00 2.66
12 13 0.907704 TCCCCTCGCACCATGTAACT 60.908 55.000 0.00 0.00 0.00 2.24
13 14 0.462047 CTCCCCTCGCACCATGTAAC 60.462 60.000 0.00 0.00 0.00 2.50
14 15 1.622607 CCTCCCCTCGCACCATGTAA 61.623 60.000 0.00 0.00 0.00 2.41
15 16 2.063979 CCTCCCCTCGCACCATGTA 61.064 63.158 0.00 0.00 0.00 2.29
16 17 3.402681 CCTCCCCTCGCACCATGT 61.403 66.667 0.00 0.00 0.00 3.21
17 18 2.388890 GATCCTCCCCTCGCACCATG 62.389 65.000 0.00 0.00 0.00 3.66
18 19 2.040464 ATCCTCCCCTCGCACCAT 60.040 61.111 0.00 0.00 0.00 3.55
19 20 2.764128 GATCCTCCCCTCGCACCA 60.764 66.667 0.00 0.00 0.00 4.17
20 21 2.764128 TGATCCTCCCCTCGCACC 60.764 66.667 0.00 0.00 0.00 5.01
21 22 1.617947 AACTGATCCTCCCCTCGCAC 61.618 60.000 0.00 0.00 0.00 5.34
22 23 1.306141 AACTGATCCTCCCCTCGCA 60.306 57.895 0.00 0.00 0.00 5.10
23 24 1.144936 CAACTGATCCTCCCCTCGC 59.855 63.158 0.00 0.00 0.00 5.03
24 25 0.461961 GTCAACTGATCCTCCCCTCG 59.538 60.000 0.00 0.00 0.00 4.63
25 26 1.872773 AGTCAACTGATCCTCCCCTC 58.127 55.000 0.00 0.00 0.00 4.30
26 27 3.491766 TTAGTCAACTGATCCTCCCCT 57.508 47.619 0.00 0.00 0.00 4.79
27 28 4.569719 TTTTAGTCAACTGATCCTCCCC 57.430 45.455 0.00 0.00 0.00 4.81
28 29 6.887002 AGAAATTTTAGTCAACTGATCCTCCC 59.113 38.462 0.00 0.00 0.00 4.30
29 30 7.627300 GCAGAAATTTTAGTCAACTGATCCTCC 60.627 40.741 0.00 0.00 0.00 4.30
30 31 7.247019 GCAGAAATTTTAGTCAACTGATCCTC 58.753 38.462 0.00 0.00 0.00 3.71
31 32 6.151817 GGCAGAAATTTTAGTCAACTGATCCT 59.848 38.462 0.00 0.00 0.00 3.24
32 33 6.151817 AGGCAGAAATTTTAGTCAACTGATCC 59.848 38.462 0.00 0.00 0.00 3.36
33 34 7.025963 CAGGCAGAAATTTTAGTCAACTGATC 58.974 38.462 0.00 0.00 0.00 2.92
34 35 6.716628 TCAGGCAGAAATTTTAGTCAACTGAT 59.283 34.615 0.00 0.00 0.00 2.90
35 36 6.017109 GTCAGGCAGAAATTTTAGTCAACTGA 60.017 38.462 0.00 0.00 0.00 3.41
36 37 6.016777 AGTCAGGCAGAAATTTTAGTCAACTG 60.017 38.462 0.00 0.00 0.00 3.16
37 38 6.016777 CAGTCAGGCAGAAATTTTAGTCAACT 60.017 38.462 0.00 0.00 0.00 3.16
38 39 6.145535 CAGTCAGGCAGAAATTTTAGTCAAC 58.854 40.000 0.00 0.00 0.00 3.18
39 40 5.241506 CCAGTCAGGCAGAAATTTTAGTCAA 59.758 40.000 0.00 0.00 0.00 3.18
40 41 4.761739 CCAGTCAGGCAGAAATTTTAGTCA 59.238 41.667 0.00 0.00 0.00 3.41
41 42 5.003804 TCCAGTCAGGCAGAAATTTTAGTC 58.996 41.667 0.00 0.00 37.29 2.59
42 43 4.985538 TCCAGTCAGGCAGAAATTTTAGT 58.014 39.130 0.00 0.00 37.29 2.24
43 44 5.964958 TTCCAGTCAGGCAGAAATTTTAG 57.035 39.130 0.00 0.00 37.29 1.85
44 45 6.493115 TCATTTCCAGTCAGGCAGAAATTTTA 59.507 34.615 0.00 0.00 36.94 1.52
45 46 5.305128 TCATTTCCAGTCAGGCAGAAATTTT 59.695 36.000 0.00 0.00 36.94 1.82
46 47 4.834496 TCATTTCCAGTCAGGCAGAAATTT 59.166 37.500 0.00 0.00 36.94 1.82
47 48 4.410099 TCATTTCCAGTCAGGCAGAAATT 58.590 39.130 1.32 0.00 36.94 1.82
48 49 4.038271 TCATTTCCAGTCAGGCAGAAAT 57.962 40.909 0.00 0.00 39.01 2.17
49 50 3.507162 TCATTTCCAGTCAGGCAGAAA 57.493 42.857 0.00 0.00 37.29 2.52
50 51 3.507162 TTCATTTCCAGTCAGGCAGAA 57.493 42.857 0.00 0.00 37.29 3.02
51 52 3.349927 CATTCATTTCCAGTCAGGCAGA 58.650 45.455 0.00 0.00 37.29 4.26
52 53 2.159282 GCATTCATTTCCAGTCAGGCAG 60.159 50.000 0.00 0.00 37.29 4.85
53 54 1.820519 GCATTCATTTCCAGTCAGGCA 59.179 47.619 0.00 0.00 37.29 4.75
54 55 2.097825 AGCATTCATTTCCAGTCAGGC 58.902 47.619 0.00 0.00 37.29 4.85
55 56 4.521146 AGTAGCATTCATTTCCAGTCAGG 58.479 43.478 0.00 0.00 39.47 3.86
56 57 7.714377 AGATAAGTAGCATTCATTTCCAGTCAG 59.286 37.037 0.00 0.00 0.00 3.51
57 58 7.568349 AGATAAGTAGCATTCATTTCCAGTCA 58.432 34.615 0.00 0.00 0.00 3.41
58 59 8.443953 AAGATAAGTAGCATTCATTTCCAGTC 57.556 34.615 0.00 0.00 0.00 3.51
59 60 8.814038 AAAGATAAGTAGCATTCATTTCCAGT 57.186 30.769 0.00 0.00 0.00 4.00
83 84 8.512956 CGGCTAGCAATCTCTATACTACTTAAA 58.487 37.037 18.24 0.00 0.00 1.52
84 85 7.120873 CCGGCTAGCAATCTCTATACTACTTAA 59.879 40.741 18.24 0.00 0.00 1.85
85 86 6.598457 CCGGCTAGCAATCTCTATACTACTTA 59.402 42.308 18.24 0.00 0.00 2.24
86 87 5.416326 CCGGCTAGCAATCTCTATACTACTT 59.584 44.000 18.24 0.00 0.00 2.24
87 88 4.944930 CCGGCTAGCAATCTCTATACTACT 59.055 45.833 18.24 0.00 0.00 2.57
88 89 4.942483 TCCGGCTAGCAATCTCTATACTAC 59.058 45.833 18.24 0.00 0.00 2.73
89 90 5.175388 TCCGGCTAGCAATCTCTATACTA 57.825 43.478 18.24 0.00 0.00 1.82
90 91 4.035612 TCCGGCTAGCAATCTCTATACT 57.964 45.455 18.24 0.00 0.00 2.12
91 92 4.993029 ATCCGGCTAGCAATCTCTATAC 57.007 45.455 18.24 0.00 0.00 1.47
92 93 7.476540 TTTTATCCGGCTAGCAATCTCTATA 57.523 36.000 18.24 1.51 0.00 1.31
93 94 6.360370 TTTTATCCGGCTAGCAATCTCTAT 57.640 37.500 18.24 2.45 0.00 1.98
94 95 5.801531 TTTTATCCGGCTAGCAATCTCTA 57.198 39.130 18.24 0.00 0.00 2.43
95 96 4.689612 TTTTATCCGGCTAGCAATCTCT 57.310 40.909 18.24 0.00 0.00 3.10
96 97 4.154918 CCATTTTATCCGGCTAGCAATCTC 59.845 45.833 18.24 0.00 0.00 2.75
97 98 4.074970 CCATTTTATCCGGCTAGCAATCT 58.925 43.478 18.24 0.54 0.00 2.40
98 99 3.366374 GCCATTTTATCCGGCTAGCAATC 60.366 47.826 18.24 0.00 42.78 2.67
99 100 2.558359 GCCATTTTATCCGGCTAGCAAT 59.442 45.455 18.24 9.24 42.78 3.56
100 101 1.953686 GCCATTTTATCCGGCTAGCAA 59.046 47.619 18.24 0.00 42.78 3.91
101 102 1.604604 GCCATTTTATCCGGCTAGCA 58.395 50.000 18.24 0.00 42.78 3.49
102 103 0.881796 GGCCATTTTATCCGGCTAGC 59.118 55.000 6.04 6.04 45.50 3.42
103 104 2.154462 CAGGCCATTTTATCCGGCTAG 58.846 52.381 5.01 0.00 45.50 3.42
104 105 1.817740 GCAGGCCATTTTATCCGGCTA 60.818 52.381 5.01 0.00 45.50 3.93
105 106 1.109323 GCAGGCCATTTTATCCGGCT 61.109 55.000 5.01 0.00 45.50 5.52
106 107 1.363807 GCAGGCCATTTTATCCGGC 59.636 57.895 5.01 0.00 45.47 6.13
107 108 1.110442 TTGCAGGCCATTTTATCCGG 58.890 50.000 5.01 0.00 0.00 5.14
108 109 2.957491 TTTGCAGGCCATTTTATCCG 57.043 45.000 5.01 0.00 0.00 4.18
109 110 4.099881 TCTGATTTGCAGGCCATTTTATCC 59.900 41.667 5.01 0.00 44.98 2.59
110 111 5.266733 TCTGATTTGCAGGCCATTTTATC 57.733 39.130 5.01 2.75 44.98 1.75
111 112 5.881923 ATCTGATTTGCAGGCCATTTTAT 57.118 34.783 5.01 0.00 44.98 1.40
112 113 5.680594 AATCTGATTTGCAGGCCATTTTA 57.319 34.783 5.01 0.00 44.98 1.52
113 114 4.563140 AATCTGATTTGCAGGCCATTTT 57.437 36.364 5.01 0.00 44.98 1.82
114 115 4.563140 AAATCTGATTTGCAGGCCATTT 57.437 36.364 14.47 0.00 44.98 2.32
115 116 4.563140 AAAATCTGATTTGCAGGCCATT 57.437 36.364 15.80 0.00 44.98 3.16
116 117 4.563140 AAAAATCTGATTTGCAGGCCAT 57.437 36.364 15.80 0.00 44.98 4.40
117 118 5.245751 TCTTAAAAATCTGATTTGCAGGCCA 59.754 36.000 15.80 0.00 44.98 5.36
118 119 5.578336 GTCTTAAAAATCTGATTTGCAGGCC 59.422 40.000 15.80 0.00 44.98 5.19
119 120 5.287035 CGTCTTAAAAATCTGATTTGCAGGC 59.713 40.000 15.80 12.00 44.98 4.85
120 121 6.611381 TCGTCTTAAAAATCTGATTTGCAGG 58.389 36.000 15.80 7.88 44.98 4.85
121 122 7.752239 ACATCGTCTTAAAAATCTGATTTGCAG 59.248 33.333 15.80 11.73 46.31 4.41
122 123 7.538334 CACATCGTCTTAAAAATCTGATTTGCA 59.462 33.333 15.80 4.86 31.77 4.08
123 124 7.461938 GCACATCGTCTTAAAAATCTGATTTGC 60.462 37.037 15.80 7.57 32.93 3.68
124 125 7.538334 TGCACATCGTCTTAAAAATCTGATTTG 59.462 33.333 15.80 4.41 31.77 2.32
125 126 7.592938 TGCACATCGTCTTAAAAATCTGATTT 58.407 30.769 9.76 9.76 0.00 2.17
126 127 7.144722 TGCACATCGTCTTAAAAATCTGATT 57.855 32.000 0.00 0.00 0.00 2.57
127 128 6.741992 TGCACATCGTCTTAAAAATCTGAT 57.258 33.333 0.00 0.00 0.00 2.90
128 129 6.204688 ACTTGCACATCGTCTTAAAAATCTGA 59.795 34.615 0.00 0.00 0.00 3.27
129 130 6.373779 ACTTGCACATCGTCTTAAAAATCTG 58.626 36.000 0.00 0.00 0.00 2.90
130 131 6.560253 ACTTGCACATCGTCTTAAAAATCT 57.440 33.333 0.00 0.00 0.00 2.40
131 132 8.015658 ACTTACTTGCACATCGTCTTAAAAATC 58.984 33.333 0.00 0.00 0.00 2.17
132 133 7.871853 ACTTACTTGCACATCGTCTTAAAAAT 58.128 30.769 0.00 0.00 0.00 1.82
133 134 7.254227 ACTTACTTGCACATCGTCTTAAAAA 57.746 32.000 0.00 0.00 0.00 1.94
134 135 6.854496 ACTTACTTGCACATCGTCTTAAAA 57.146 33.333 0.00 0.00 0.00 1.52
135 136 6.655062 CAACTTACTTGCACATCGTCTTAAA 58.345 36.000 0.00 0.00 0.00 1.52
136 137 6.223138 CAACTTACTTGCACATCGTCTTAA 57.777 37.500 0.00 0.00 0.00 1.85
137 138 5.839262 CAACTTACTTGCACATCGTCTTA 57.161 39.130 0.00 0.00 0.00 2.10
138 139 4.732285 CAACTTACTTGCACATCGTCTT 57.268 40.909 0.00 0.00 0.00 3.01
149 150 5.695851 AACCAGATGAAGCAACTTACTTG 57.304 39.130 0.00 0.00 0.00 3.16
150 151 5.827797 TGAAACCAGATGAAGCAACTTACTT 59.172 36.000 0.00 0.00 0.00 2.24
151 152 5.376625 TGAAACCAGATGAAGCAACTTACT 58.623 37.500 0.00 0.00 0.00 2.24
152 153 5.470098 TCTGAAACCAGATGAAGCAACTTAC 59.530 40.000 0.00 0.00 35.88 2.34
153 154 5.470098 GTCTGAAACCAGATGAAGCAACTTA 59.530 40.000 0.00 0.00 42.11 2.24
154 155 4.276926 GTCTGAAACCAGATGAAGCAACTT 59.723 41.667 0.00 0.00 42.11 2.66
155 156 3.817647 GTCTGAAACCAGATGAAGCAACT 59.182 43.478 0.00 0.00 42.11 3.16
156 157 4.152607 GTCTGAAACCAGATGAAGCAAC 57.847 45.455 0.00 0.00 42.11 4.17
169 170 0.947244 CACACAGGCAGGTCTGAAAC 59.053 55.000 8.06 0.00 38.11 2.78
170 171 0.179020 CCACACAGGCAGGTCTGAAA 60.179 55.000 8.06 0.00 38.11 2.69
171 172 1.451504 CCACACAGGCAGGTCTGAA 59.548 57.895 8.06 0.00 38.11 3.02
172 173 3.150949 CCACACAGGCAGGTCTGA 58.849 61.111 8.06 0.00 38.11 3.27
188 189 4.443266 AACTCAGAGCCGCGAGCC 62.443 66.667 8.23 3.87 45.47 4.70
189 190 2.883253 GAACTCAGAGCCGCGAGC 60.883 66.667 8.23 9.98 44.25 5.03
190 191 0.869454 GATGAACTCAGAGCCGCGAG 60.869 60.000 8.23 0.00 35.30 5.03
191 192 1.139734 GATGAACTCAGAGCCGCGA 59.860 57.895 8.23 0.00 0.00 5.87
192 193 0.529337 ATGATGAACTCAGAGCCGCG 60.529 55.000 0.00 0.00 37.28 6.46
193 194 2.515926 TATGATGAACTCAGAGCCGC 57.484 50.000 0.00 0.00 37.28 6.53
194 195 8.763049 TTAATTATATGATGAACTCAGAGCCG 57.237 34.615 0.00 0.00 37.28 5.52
487 496 6.159988 CCTTTTTGTCAATATACGGCCAAAA 58.840 36.000 2.24 0.00 31.95 2.44
488 497 5.244178 ACCTTTTTGTCAATATACGGCCAAA 59.756 36.000 2.24 0.00 0.00 3.28
494 503 7.581476 ACTGTGAACCTTTTTGTCAATATACG 58.419 34.615 0.00 0.00 0.00 3.06
555 565 9.899226 CCAGATTTTAGTTCTTCTTTCGATTTT 57.101 29.630 0.00 0.00 0.00 1.82
568 578 9.965824 TGTTTTTCTCATTCCAGATTTTAGTTC 57.034 29.630 0.00 0.00 0.00 3.01
601 611 9.264719 CAGCTATTTTGATTTGAGGTTTCTTTT 57.735 29.630 0.00 0.00 0.00 2.27
602 612 8.424133 ACAGCTATTTTGATTTGAGGTTTCTTT 58.576 29.630 0.00 0.00 0.00 2.52
605 615 9.129209 GTAACAGCTATTTTGATTTGAGGTTTC 57.871 33.333 0.00 0.00 0.00 2.78
607 617 7.451566 AGGTAACAGCTATTTTGATTTGAGGTT 59.548 33.333 0.00 0.00 41.41 3.50
611 621 6.945435 TCCAGGTAACAGCTATTTTGATTTGA 59.055 34.615 0.00 0.00 41.41 2.69
619 629 3.744530 GCCGATCCAGGTAACAGCTATTT 60.745 47.826 0.00 0.00 41.41 1.40
651 700 1.594862 GTGATAACTCCTGCATGACGC 59.405 52.381 0.00 0.00 42.89 5.19
666 715 3.446161 ACTTTCGATCGAACCAGGTGATA 59.554 43.478 29.15 11.09 33.41 2.15
671 720 2.363788 TGACTTTCGATCGAACCAGG 57.636 50.000 29.15 20.01 33.41 4.45
679 728 2.942710 TCTGGTCGTTGACTTTCGATC 58.057 47.619 0.00 0.00 38.32 3.69
705 754 0.670546 CATCCGCTCTGGTTTCGTGT 60.671 55.000 0.00 0.00 39.52 4.49
708 757 0.721718 GTTCATCCGCTCTGGTTTCG 59.278 55.000 0.00 0.00 39.52 3.46
709 758 1.808411 TGTTCATCCGCTCTGGTTTC 58.192 50.000 0.00 0.00 39.52 2.78
719 768 0.165944 GTGGAAGCGTTGTTCATCCG 59.834 55.000 0.00 0.00 32.72 4.18
720 769 0.521735 GGTGGAAGCGTTGTTCATCC 59.478 55.000 0.00 0.00 0.00 3.51
721 770 1.464997 GAGGTGGAAGCGTTGTTCATC 59.535 52.381 0.00 0.00 40.95 2.92
722 771 1.523758 GAGGTGGAAGCGTTGTTCAT 58.476 50.000 0.00 0.00 40.95 2.57
723 772 0.878523 CGAGGTGGAAGCGTTGTTCA 60.879 55.000 0.00 0.00 40.95 3.18
747 796 1.300080 GGGGACGAAACACGACGAA 60.300 57.895 0.00 0.00 45.77 3.85
777 826 0.959372 GAGGAGACGTCGGGAGAACA 60.959 60.000 10.46 0.00 42.89 3.18
792 841 3.760035 GAGGAAGCACGGCGAGGA 61.760 66.667 16.62 0.00 0.00 3.71
830 879 3.123804 CCAGCTACGTATTTGCCTACAG 58.876 50.000 0.00 0.00 0.00 2.74
841 890 1.152610 CCTAGGGCCCAGCTACGTA 60.153 63.158 27.56 4.25 0.00 3.57
881 930 2.203126 CCATCGGAGAAGCTGGGC 60.203 66.667 0.00 0.00 43.58 5.36
891 940 2.462723 TGTTGGTATGTCTCCATCGGA 58.537 47.619 0.00 0.00 34.75 4.55
892 941 2.979814 TGTTGGTATGTCTCCATCGG 57.020 50.000 0.00 0.00 34.75 4.18
893 942 5.818136 AAAATGTTGGTATGTCTCCATCG 57.182 39.130 0.00 0.00 34.75 3.84
896 945 9.703892 CAAAAATAAAATGTTGGTATGTCTCCA 57.296 29.630 0.00 0.00 0.00 3.86
897 946 9.150348 CCAAAAATAAAATGTTGGTATGTCTCC 57.850 33.333 0.00 0.00 36.55 3.71
898 947 8.655970 GCCAAAAATAAAATGTTGGTATGTCTC 58.344 33.333 3.44 0.00 42.14 3.36
899 948 7.606073 GGCCAAAAATAAAATGTTGGTATGTCT 59.394 33.333 0.00 0.00 42.14 3.41
900 949 7.148323 GGGCCAAAAATAAAATGTTGGTATGTC 60.148 37.037 4.39 0.00 42.14 3.06
912 961 3.800604 GCAGTCACGGGCCAAAAATAAAA 60.801 43.478 4.39 0.00 0.00 1.52
914 963 1.271102 GCAGTCACGGGCCAAAAATAA 59.729 47.619 4.39 0.00 0.00 1.40
916 965 1.665442 GCAGTCACGGGCCAAAAAT 59.335 52.632 4.39 0.00 0.00 1.82
927 976 4.729918 CTGGGCCCTGGCAGTCAC 62.730 72.222 25.70 6.53 44.11 3.67
943 1026 1.774217 TGGGGTTTCACCTCTGCCT 60.774 57.895 0.00 0.00 40.26 4.75
1056 1391 3.506059 CTGATGTAGAGGCGGCGGG 62.506 68.421 9.78 0.00 0.00 6.13
1207 1560 2.608988 CAGGCAGGGAGGAGGTGT 60.609 66.667 0.00 0.00 0.00 4.16
1221 1574 2.551459 CAAAGAAAGCAGGAGTGACAGG 59.449 50.000 0.00 0.00 0.00 4.00
1244 1601 7.340256 CGGAGGGAGTAACATATAGAGTAGAT 58.660 42.308 0.00 0.00 0.00 1.98
1254 1611 0.761702 GGGGCGGAGGGAGTAACATA 60.762 60.000 0.00 0.00 0.00 2.29
1255 1612 2.070650 GGGGCGGAGGGAGTAACAT 61.071 63.158 0.00 0.00 0.00 2.71
1256 1613 2.686106 GGGGCGGAGGGAGTAACA 60.686 66.667 0.00 0.00 0.00 2.41
1257 1614 0.761702 TATGGGGCGGAGGGAGTAAC 60.762 60.000 0.00 0.00 0.00 2.50
1258 1615 0.192566 ATATGGGGCGGAGGGAGTAA 59.807 55.000 0.00 0.00 0.00 2.24
1260 1617 0.192566 TTATATGGGGCGGAGGGAGT 59.807 55.000 0.00 0.00 0.00 3.85
1261 1618 1.584724 ATTATATGGGGCGGAGGGAG 58.415 55.000 0.00 0.00 0.00 4.30
1262 1619 2.953093 TATTATATGGGGCGGAGGGA 57.047 50.000 0.00 0.00 0.00 4.20
1263 1620 3.583086 CCTATATTATATGGGGCGGAGGG 59.417 52.174 6.71 0.00 0.00 4.30
1264 1621 4.283722 GTCCTATATTATATGGGGCGGAGG 59.716 50.000 13.50 2.44 0.00 4.30
1265 1622 4.022242 CGTCCTATATTATATGGGGCGGAG 60.022 50.000 26.68 6.08 40.82 4.63
1266 1623 3.893200 CGTCCTATATTATATGGGGCGGA 59.107 47.826 26.68 8.60 40.82 5.54
1267 1624 4.252971 CGTCCTATATTATATGGGGCGG 57.747 50.000 26.68 12.93 40.82 6.13
1269 1626 7.933215 AAAAACGTCCTATATTATATGGGGC 57.067 36.000 13.50 11.25 0.00 5.80
1290 1647 2.803956 GGCGCTACACTAGTGTCAAAAA 59.196 45.455 31.11 13.19 43.74 1.94
1291 1648 2.224090 TGGCGCTACACTAGTGTCAAAA 60.224 45.455 31.11 13.57 46.67 2.44
1292 1649 1.341852 TGGCGCTACACTAGTGTCAAA 59.658 47.619 31.11 13.94 46.67 2.69
1293 1650 0.963225 TGGCGCTACACTAGTGTCAA 59.037 50.000 31.11 14.69 46.67 3.18
1295 1652 2.074547 TTTGGCGCTACACTAGTGTC 57.925 50.000 31.11 17.17 43.74 3.67
1296 1653 2.536761 TTTTGGCGCTACACTAGTGT 57.463 45.000 30.13 30.13 46.87 3.55
1319 1676 4.583489 TCCCTCGGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 38.94 3.01
1320 1677 4.800023 TCCCTCGGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
1321 1678 4.585162 ACTCCCTCGGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
1322 1679 4.543689 ACTCCCTCGGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
1323 1680 4.180377 ACTCCCTCGGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
1324 1681 3.033659 ACTCCCTCGGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
1325 1682 4.585162 AGTTACTCCCTCGGTCTCATAATG 59.415 45.833 0.00 0.00 0.00 1.90
1326 1683 4.585162 CAGTTACTCCCTCGGTCTCATAAT 59.415 45.833 0.00 0.00 0.00 1.28
1327 1684 3.952323 CAGTTACTCCCTCGGTCTCATAA 59.048 47.826 0.00 0.00 0.00 1.90
1328 1685 3.053842 ACAGTTACTCCCTCGGTCTCATA 60.054 47.826 0.00 0.00 0.00 2.15
1329 1686 2.291670 ACAGTTACTCCCTCGGTCTCAT 60.292 50.000 0.00 0.00 0.00 2.90
1330 1687 1.075050 ACAGTTACTCCCTCGGTCTCA 59.925 52.381 0.00 0.00 0.00 3.27
1331 1688 1.836802 ACAGTTACTCCCTCGGTCTC 58.163 55.000 0.00 0.00 0.00 3.36
1332 1689 2.305858 AACAGTTACTCCCTCGGTCT 57.694 50.000 0.00 0.00 0.00 3.85
1333 1690 3.397849 AAAACAGTTACTCCCTCGGTC 57.602 47.619 0.00 0.00 0.00 4.79
1334 1691 4.101430 TGTTAAAACAGTTACTCCCTCGGT 59.899 41.667 0.00 0.00 34.30 4.69
1335 1692 4.634199 TGTTAAAACAGTTACTCCCTCGG 58.366 43.478 0.00 0.00 34.30 4.63
1336 1693 5.756833 ACTTGTTAAAACAGTTACTCCCTCG 59.243 40.000 0.00 0.00 40.50 4.63
1337 1694 7.066645 ACAACTTGTTAAAACAGTTACTCCCTC 59.933 37.037 9.04 0.00 40.50 4.30
1338 1695 6.888088 ACAACTTGTTAAAACAGTTACTCCCT 59.112 34.615 9.04 0.00 40.50 4.20
1339 1696 6.970613 CACAACTTGTTAAAACAGTTACTCCC 59.029 38.462 9.04 0.00 40.50 4.30
1340 1697 7.754625 TCACAACTTGTTAAAACAGTTACTCC 58.245 34.615 9.04 0.00 40.50 3.85
1341 1698 9.783256 AATCACAACTTGTTAAAACAGTTACTC 57.217 29.630 9.04 0.00 40.50 2.59
1354 1712 3.636300 TGCTAGCCAAATCACAACTTGTT 59.364 39.130 13.29 0.00 0.00 2.83
1356 1714 3.503363 TCTGCTAGCCAAATCACAACTTG 59.497 43.478 13.29 0.00 0.00 3.16
1513 1872 4.975631 TCTCGTCCCTAAAATCCACAAAA 58.024 39.130 0.00 0.00 0.00 2.44
1609 1968 6.482308 AGCTAGCTCGAACAAAGAAAAAGTAA 59.518 34.615 12.68 0.00 0.00 2.24
1613 1972 5.989777 AGTAGCTAGCTCGAACAAAGAAAAA 59.010 36.000 23.26 0.00 0.00 1.94
1673 2032 9.490663 CAAACGAAAATAATGAAGGACAGATAC 57.509 33.333 0.00 0.00 0.00 2.24
1785 2153 0.986527 TTGCTCCTGATGCTTCTGGA 59.013 50.000 21.91 21.91 44.93 3.86
1787 2155 3.003482 GCTAATTGCTCCTGATGCTTCTG 59.997 47.826 0.88 0.46 38.95 3.02
2007 2398 7.848051 GCTTCATTTCTAATAAGACACGACATG 59.152 37.037 0.00 0.00 0.00 3.21
2012 2403 8.407457 TGTAGCTTCATTTCTAATAAGACACG 57.593 34.615 0.00 0.00 0.00 4.49
2088 2479 7.841915 ATTACAAAAACAAAGGTGAAGTTGG 57.158 32.000 0.00 0.00 0.00 3.77
2178 2569 1.443802 GAGCTTTCAGCACTGGGTAC 58.556 55.000 0.00 0.00 45.56 3.34
2219 2610 4.762956 AACGTATTATCGGTCTAGCTCC 57.237 45.455 0.00 0.00 34.94 4.70
2237 2628 5.681105 CCATTTTTGTGTCACAGAACTAACG 59.319 40.000 8.37 0.00 0.00 3.18
2281 2672 6.491403 GGGTTATGTGGCATGAAAGAGATATT 59.509 38.462 0.00 0.00 0.00 1.28
2296 2687 4.709397 ACCAATACAATGTGGGTTATGTGG 59.291 41.667 0.00 0.00 39.39 4.17
2312 2703 9.705290 AAATTTGACCAACAATTAGACCAATAC 57.295 29.630 0.00 0.00 38.36 1.89
2565 3285 3.126858 TGGTTTGCTAGATTGATTGCGTC 59.873 43.478 0.00 0.00 0.00 5.19
2569 3289 5.183713 TGGAAGTGGTTTGCTAGATTGATTG 59.816 40.000 0.00 0.00 0.00 2.67
2597 3317 9.650539 ATCTCGATCAGGATATAAAACTTCATG 57.349 33.333 0.00 0.00 0.00 3.07
2617 3337 2.762887 AGGAGTCAGAATTGCATCTCGA 59.237 45.455 0.00 0.00 0.00 4.04
2636 3356 4.735369 ACTATGGAGTATGGAGTCTCAGG 58.265 47.826 1.47 0.00 32.65 3.86
2724 3466 3.758023 CCACATTGTCAAGTAAGATGGCA 59.242 43.478 0.00 0.00 0.00 4.92
2813 3571 0.107017 ATCGGGGAACAGCAATGAGG 60.107 55.000 0.00 0.00 0.00 3.86
2822 3580 4.013728 CCTGATTGTAAAATCGGGGAACA 58.986 43.478 21.92 0.00 46.97 3.18
2896 3654 1.138266 GCTCATGCTGAATGCCCAAAT 59.862 47.619 0.00 0.00 42.00 2.32
3028 3786 2.370633 GGGAGGAGGAAGAGGCCT 59.629 66.667 3.86 3.86 42.17 5.19
3056 3814 2.460669 TCTCTGTCATAGAAGGCTGCA 58.539 47.619 0.50 0.00 34.32 4.41
3139 3897 8.506168 AACTGAAAGATACAAACACAAGAAGA 57.494 30.769 0.00 0.00 37.43 2.87
3169 3927 7.170658 GTGTGCATAAACTTTTGGCAAAGATAA 59.829 33.333 13.04 0.00 41.97 1.75
3685 4444 0.312102 GTTCAGGCTGACCAACAAGC 59.688 55.000 18.55 0.00 39.06 4.01
3948 4857 3.566742 TGTAAAGAAAAAGAAGGCCGGAC 59.433 43.478 5.05 0.00 0.00 4.79
4427 5344 7.621683 AGCAAGGAACATAATTGGGGTATTAAA 59.378 33.333 0.00 0.00 0.00 1.52
4434 5351 2.695147 GGAGCAAGGAACATAATTGGGG 59.305 50.000 0.00 0.00 0.00 4.96
4491 5408 4.464244 TGTGGTCCAAAAACAAATGTCAGA 59.536 37.500 0.00 0.00 0.00 3.27
4524 5441 4.895668 AAATGAAACAAGATGGTGGCAT 57.104 36.364 0.00 0.00 0.00 4.40
4565 5482 5.526846 GGAGCGAGATCAGAAAATTTCAGAT 59.473 40.000 12.44 12.44 38.43 2.90
4737 5659 3.950395 GCTTTTGATCTGAGGGTATGCTT 59.050 43.478 0.00 0.00 0.00 3.91
5077 6010 3.820467 CCACAATCTTGGTTGCTAACTCA 59.180 43.478 0.00 0.00 32.32 3.41
5137 6074 5.637810 ACGATAAGTGCCATTATATTCCACG 59.362 40.000 0.00 0.00 0.00 4.94
5207 6144 4.188462 TGCGGTACATCAAATAAGGTGAG 58.812 43.478 0.00 0.00 0.00 3.51
5299 6238 9.551734 CCAGTGTTATTGATCTGAGATTTCATA 57.448 33.333 0.00 0.00 31.68 2.15
5327 6268 1.147153 CTCCCCTCCTCCAAATCGC 59.853 63.158 0.00 0.00 0.00 4.58
5341 6282 3.742640 CGTTCTCATCCTCATTTCCTCCC 60.743 52.174 0.00 0.00 0.00 4.30
5344 6285 5.365021 AATCGTTCTCATCCTCATTTCCT 57.635 39.130 0.00 0.00 0.00 3.36
5464 6405 5.369993 GGGGGAATAAGGATAAGAACAGACT 59.630 44.000 0.00 0.00 0.00 3.24
5498 6439 3.013219 GGAGTCTTGCCAAGGAAGATTC 58.987 50.000 4.30 11.29 36.14 2.52
5579 6562 2.811317 GCGAAGAGGTGGCTGTCG 60.811 66.667 0.00 0.00 34.89 4.35
5669 6652 2.998097 CCTGGCGAAATGGGAGGA 59.002 61.111 0.00 0.00 0.00 3.71
5685 6668 2.168728 AGATGGAAGAGTTAGGTTCGCC 59.831 50.000 0.00 0.00 37.60 5.54
5715 6698 6.243900 AGGATACAAATGGCAAGGAGATATG 58.756 40.000 0.00 0.00 41.41 1.78
5717 6700 5.369404 TGAGGATACAAATGGCAAGGAGATA 59.631 40.000 0.00 0.00 41.41 1.98
5718 6701 4.166725 TGAGGATACAAATGGCAAGGAGAT 59.833 41.667 0.00 0.00 41.41 2.75
5721 6704 4.524802 ATGAGGATACAAATGGCAAGGA 57.475 40.909 0.00 0.00 41.41 3.36
5722 6705 6.243900 AGATATGAGGATACAAATGGCAAGG 58.756 40.000 0.00 0.00 41.41 3.61
5804 7355 8.745837 CAATGTGACAAAACTTCATCTTTGTAC 58.254 33.333 0.00 0.00 43.88 2.90
5811 7362 5.042593 TGCACAATGTGACAAAACTTCATC 58.957 37.500 18.66 0.00 35.23 2.92
5812 7363 5.008619 TGCACAATGTGACAAAACTTCAT 57.991 34.783 18.66 0.00 35.23 2.57
5814 7365 4.266029 CACTGCACAATGTGACAAAACTTC 59.734 41.667 18.66 0.00 35.23 3.01
5821 7373 4.338964 AGAAAATCACTGCACAATGTGACA 59.661 37.500 18.66 13.17 44.52 3.58
5872 7424 2.871453 TGGTAGGAAGGCAAAAGGAAC 58.129 47.619 0.00 0.00 0.00 3.62
5874 7426 2.647299 TGATGGTAGGAAGGCAAAAGGA 59.353 45.455 0.00 0.00 0.00 3.36
5894 7446 3.684305 TCTGCAGTTGATAAACGACCATG 59.316 43.478 14.67 0.00 33.59 3.66
5900 7452 4.685169 ATTGGTCTGCAGTTGATAAACG 57.315 40.909 14.67 0.00 0.00 3.60
5910 7462 6.076981 ACTTTCACTTAAATTGGTCTGCAG 57.923 37.500 7.63 7.63 0.00 4.41
5961 7513 6.773638 AGGACAGTATTCACTTCTGAAACAT 58.226 36.000 0.00 0.00 39.90 2.71
5990 7542 3.119096 GCTGACCCGACGAAAGGC 61.119 66.667 0.00 0.00 0.00 4.35
5993 7545 1.289066 CTGAGCTGACCCGACGAAA 59.711 57.895 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.