Multiple sequence alignment - TraesCS6B01G123600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G123600 chr6B 100.000 2516 0 0 1 2516 118823679 118821164 0.000000e+00 4647.0
1 TraesCS6B01G123600 chr6B 87.884 2278 254 16 1 2269 76599472 76597208 0.000000e+00 2658.0
2 TraesCS6B01G123600 chr6B 86.960 1365 165 9 911 2269 76733990 76732633 0.000000e+00 1522.0
3 TraesCS6B01G123600 chr6B 89.199 861 85 6 1 857 76742307 76741451 0.000000e+00 1068.0
4 TraesCS6B01G123600 chr6B 91.739 230 18 1 2286 2514 118785907 118785678 4.040000e-83 318.0
5 TraesCS6B01G123600 chr6D 92.957 2286 145 9 1 2283 51624970 51622698 0.000000e+00 3315.0
6 TraesCS6B01G123600 chr6D 90.009 2282 208 13 1 2271 53309097 53311369 0.000000e+00 2933.0
7 TraesCS6B01G123600 chr6D 94.872 39 2 0 1385 1423 52007948 52007986 7.510000e-06 62.1
8 TraesCS6B01G123600 chr6A 89.393 2291 223 16 1 2283 62490026 62487748 0.000000e+00 2867.0
9 TraesCS6B01G123600 chr6A 87.747 1771 191 11 515 2278 42389528 42387777 0.000000e+00 2045.0
10 TraesCS6B01G123600 chr6A 87.190 1772 191 14 515 2278 42208617 42206874 0.000000e+00 1982.0
11 TraesCS6B01G123600 chr6A 91.139 474 36 5 1 472 42209084 42208615 2.730000e-179 638.0
12 TraesCS6B01G123600 chr6A 90.928 474 37 5 1 472 42389995 42389526 1.270000e-177 632.0
13 TraesCS6B01G123600 chrUn 89.501 1524 149 9 767 2283 105245674 105247193 0.000000e+00 1917.0
14 TraesCS6B01G123600 chrUn 89.381 565 49 4 3 565 105245118 105245673 0.000000e+00 701.0
15 TraesCS6B01G123600 chrUn 90.854 328 25 4 1 326 345248604 345248280 3.840000e-118 435.0
16 TraesCS6B01G123600 chr5A 90.558 233 21 1 2284 2516 672276729 672276498 8.740000e-80 307.0
17 TraesCS6B01G123600 chr5A 88.889 234 25 1 2283 2516 672179317 672179085 1.140000e-73 287.0
18 TraesCS6B01G123600 chr3B 89.224 232 24 1 2283 2514 400427354 400427124 3.170000e-74 289.0
19 TraesCS6B01G123600 chr3B 88.889 234 25 1 2283 2516 802320173 802319941 1.140000e-73 287.0
20 TraesCS6B01G123600 chr2B 88.462 234 27 0 2283 2516 353434318 353434551 1.470000e-72 283.0
21 TraesCS6B01G123600 chr2D 88.186 237 26 2 2280 2516 554813122 554813356 5.300000e-72 281.0
22 TraesCS6B01G123600 chr4B 88.412 233 25 2 2284 2516 166378295 166378065 1.910000e-71 279.0
23 TraesCS6B01G123600 chr5D 88.034 234 28 0 2283 2516 235530025 235530258 6.850000e-71 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G123600 chr6B 118821164 118823679 2515 True 4647.0 4647 100.0000 1 2516 1 chr6B.!!$R5 2515
1 TraesCS6B01G123600 chr6B 76597208 76599472 2264 True 2658.0 2658 87.8840 1 2269 1 chr6B.!!$R1 2268
2 TraesCS6B01G123600 chr6B 76732633 76733990 1357 True 1522.0 1522 86.9600 911 2269 1 chr6B.!!$R2 1358
3 TraesCS6B01G123600 chr6B 76741451 76742307 856 True 1068.0 1068 89.1990 1 857 1 chr6B.!!$R3 856
4 TraesCS6B01G123600 chr6D 51622698 51624970 2272 True 3315.0 3315 92.9570 1 2283 1 chr6D.!!$R1 2282
5 TraesCS6B01G123600 chr6D 53309097 53311369 2272 False 2933.0 2933 90.0090 1 2271 1 chr6D.!!$F2 2270
6 TraesCS6B01G123600 chr6A 62487748 62490026 2278 True 2867.0 2867 89.3930 1 2283 1 chr6A.!!$R1 2282
7 TraesCS6B01G123600 chr6A 42387777 42389995 2218 True 1338.5 2045 89.3375 1 2278 2 chr6A.!!$R3 2277
8 TraesCS6B01G123600 chr6A 42206874 42209084 2210 True 1310.0 1982 89.1645 1 2278 2 chr6A.!!$R2 2277
9 TraesCS6B01G123600 chrUn 105245118 105247193 2075 False 1309.0 1917 89.4410 3 2283 2 chrUn.!!$F1 2280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 728 0.037697 CCACGACCATCCGTTCTTGA 60.038 55.0 0.0 0.0 41.29 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2462 0.036388 CCTCGCCCTGTTGCTCTTTA 60.036 55.0 0.0 0.0 0.0 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.080336 CTTGGAGGCTTTGGGGTGGA 62.080 60.000 0.00 0.00 0.00 4.02
184 189 5.940470 AGGGAGACTTTGAATGTGTTATCAC 59.060 40.000 0.00 0.00 44.08 3.06
214 220 2.188817 GGGGATGGTGTGAAGTAGACT 58.811 52.381 0.00 0.00 0.00 3.24
375 383 7.381408 CCAACATCACATTATCTGATCATTTGC 59.619 37.037 0.00 0.00 0.00 3.68
391 399 7.760794 TGATCATTTGCCAATTCTTTGATGTAC 59.239 33.333 0.00 0.00 34.60 2.90
441 449 0.179067 TTGCCGGTTCGAGTGTTCTT 60.179 50.000 1.90 0.00 0.00 2.52
473 481 7.069826 CCATTACATCCACAGTTTTTCCCATAT 59.930 37.037 0.00 0.00 0.00 1.78
620 628 5.579511 CCATAGCTTTCTTGCAAATTCTTGG 59.420 40.000 0.00 0.00 32.76 3.61
669 677 3.683365 ATTTGCCATGTCCTTTGGAAC 57.317 42.857 0.00 0.00 36.26 3.62
720 728 0.037697 CCACGACCATCCGTTCTTGA 60.038 55.000 0.00 0.00 41.29 3.02
751 759 5.094387 AGAGAAGGAGAAGGGAAATGTACA 58.906 41.667 0.00 0.00 0.00 2.90
753 761 6.216456 AGAGAAGGAGAAGGGAAATGTACAAT 59.784 38.462 0.00 0.00 0.00 2.71
836 844 0.875059 CTGAGCCAACGGAGGTTTTC 59.125 55.000 0.00 0.00 32.98 2.29
920 928 3.876309 TCCCCCATCTATTTAACTGCC 57.124 47.619 0.00 0.00 0.00 4.85
926 934 4.586001 CCCATCTATTTAACTGCCAGCATT 59.414 41.667 0.00 0.00 0.00 3.56
1053 1062 2.434185 GCACCGAGCGACCATGAA 60.434 61.111 0.00 0.00 0.00 2.57
1054 1063 2.032634 GCACCGAGCGACCATGAAA 61.033 57.895 0.00 0.00 0.00 2.69
1128 1137 1.410153 ACTTTGAAGGGCAAGCAAGTG 59.590 47.619 0.00 0.00 37.87 3.16
1138 1147 2.221299 AAGCAAGTGGCCGACCCTA 61.221 57.895 0.00 0.00 46.50 3.53
1153 1162 2.504175 GACCCTAAAGACTATGGTGGCA 59.496 50.000 0.00 0.00 0.00 4.92
1209 1218 2.007049 GCCATCGACATCAACGAGGTT 61.007 52.381 0.00 0.00 42.81 3.50
1250 1262 1.734465 CCTCGACAACCTTCTTCATGC 59.266 52.381 0.00 0.00 0.00 4.06
1619 1637 8.095452 AGAGGCTTCAAGAAAGATTCCTATTA 57.905 34.615 0.00 0.00 37.12 0.98
1643 1662 7.764141 ATGCTACATATGGAATAAATGTGCA 57.236 32.000 7.80 2.12 39.53 4.57
1757 1778 0.963962 AGAACCTCCGTACTTTGCGA 59.036 50.000 0.00 0.00 0.00 5.10
1847 1869 0.409484 ATCCAACCTTCACCCCCTTG 59.591 55.000 0.00 0.00 0.00 3.61
1866 1888 5.243207 CCTTGTTTCTACCCGTAGTCATTT 58.757 41.667 1.96 0.00 34.84 2.32
1886 1908 9.778741 GTCATTTCATAATACCTCTCCACATTA 57.221 33.333 0.00 0.00 0.00 1.90
1890 1912 9.832445 TTTCATAATACCTCTCCACATTACTTC 57.168 33.333 0.00 0.00 0.00 3.01
1918 1940 7.446319 CCATACTAAGATGAGGCATTTGATGAA 59.554 37.037 0.00 0.00 0.00 2.57
2031 2061 2.349590 CATCAGAGGCGTTGAATGTGA 58.650 47.619 0.00 0.00 0.00 3.58
2032 2062 2.768253 TCAGAGGCGTTGAATGTGAT 57.232 45.000 0.00 0.00 0.00 3.06
2083 2113 3.071023 ACTGGTCAAAGATCACGAGGAAA 59.929 43.478 0.00 0.00 0.00 3.13
2085 2115 4.456535 TGGTCAAAGATCACGAGGAAAAA 58.543 39.130 0.00 0.00 0.00 1.94
2273 2306 6.314400 GTCTGTTCACAAAGGTAGTAACACAA 59.686 38.462 0.00 0.00 0.00 3.33
2283 2316 3.744426 GGTAGTAACACAAACACGCATCT 59.256 43.478 0.00 0.00 0.00 2.90
2284 2317 3.878086 AGTAACACAAACACGCATCTG 57.122 42.857 0.00 0.00 0.00 2.90
2285 2318 3.202906 AGTAACACAAACACGCATCTGT 58.797 40.909 0.00 0.00 0.00 3.41
2286 2319 2.755836 AACACAAACACGCATCTGTC 57.244 45.000 0.00 0.00 0.00 3.51
2287 2320 0.581529 ACACAAACACGCATCTGTCG 59.418 50.000 0.00 0.00 0.00 4.35
2288 2321 0.110688 CACAAACACGCATCTGTCGG 60.111 55.000 0.00 0.00 0.00 4.79
2289 2322 0.531974 ACAAACACGCATCTGTCGGT 60.532 50.000 0.00 0.00 0.00 4.69
2290 2323 0.110688 CAAACACGCATCTGTCGGTG 60.111 55.000 0.00 0.00 0.00 4.94
2291 2324 0.531974 AAACACGCATCTGTCGGTGT 60.532 50.000 0.00 0.00 0.00 4.16
2292 2325 0.315886 AACACGCATCTGTCGGTGTA 59.684 50.000 0.00 0.00 0.00 2.90
2293 2326 0.388134 ACACGCATCTGTCGGTGTAC 60.388 55.000 0.00 0.00 0.00 2.90
2294 2327 0.388006 CACGCATCTGTCGGTGTACA 60.388 55.000 0.00 0.00 0.00 2.90
2295 2328 0.109272 ACGCATCTGTCGGTGTACAG 60.109 55.000 0.00 0.00 46.78 2.74
2303 2336 2.165167 TGTCGGTGTACAGAAGTAGGG 58.835 52.381 0.00 0.00 0.00 3.53
2304 2337 1.475682 GTCGGTGTACAGAAGTAGGGG 59.524 57.143 0.00 0.00 0.00 4.79
2305 2338 0.175073 CGGTGTACAGAAGTAGGGGC 59.825 60.000 0.00 0.00 0.00 5.80
2306 2339 1.569653 GGTGTACAGAAGTAGGGGCT 58.430 55.000 0.00 0.00 0.00 5.19
2307 2340 1.481363 GGTGTACAGAAGTAGGGGCTC 59.519 57.143 0.00 0.00 0.00 4.70
2308 2341 2.458620 GTGTACAGAAGTAGGGGCTCT 58.541 52.381 0.00 0.00 0.00 4.09
2309 2342 3.626729 GGTGTACAGAAGTAGGGGCTCTA 60.627 52.174 0.00 0.00 0.00 2.43
2310 2343 3.380954 GTGTACAGAAGTAGGGGCTCTAC 59.619 52.174 16.96 16.96 46.63 2.59
2316 2349 3.209091 GTAGGGGCTCTACTCTGCA 57.791 57.895 17.38 0.00 43.75 4.41
2317 2350 0.747852 GTAGGGGCTCTACTCTGCAC 59.252 60.000 17.38 0.00 43.75 4.57
2318 2351 2.904131 GGGGCTCTACTCTGCACC 59.096 66.667 0.00 0.00 46.09 5.01
2319 2352 2.736826 GGGGCTCTACTCTGCACCC 61.737 68.421 0.00 0.00 46.39 4.61
2320 2353 2.736826 GGGCTCTACTCTGCACCCC 61.737 68.421 0.00 0.00 0.00 4.95
2321 2354 2.736826 GGCTCTACTCTGCACCCCC 61.737 68.421 0.00 0.00 0.00 5.40
2322 2355 1.687493 GCTCTACTCTGCACCCCCT 60.687 63.158 0.00 0.00 0.00 4.79
2323 2356 1.268283 GCTCTACTCTGCACCCCCTT 61.268 60.000 0.00 0.00 0.00 3.95
2324 2357 1.965318 GCTCTACTCTGCACCCCCTTA 60.965 57.143 0.00 0.00 0.00 2.69
2325 2358 1.757699 CTCTACTCTGCACCCCCTTAC 59.242 57.143 0.00 0.00 0.00 2.34
2326 2359 0.831307 CTACTCTGCACCCCCTTACC 59.169 60.000 0.00 0.00 0.00 2.85
2327 2360 0.416231 TACTCTGCACCCCCTTACCT 59.584 55.000 0.00 0.00 0.00 3.08
2328 2361 1.201429 ACTCTGCACCCCCTTACCTG 61.201 60.000 0.00 0.00 0.00 4.00
2329 2362 1.151899 TCTGCACCCCCTTACCTGT 60.152 57.895 0.00 0.00 0.00 4.00
2330 2363 1.002134 CTGCACCCCCTTACCTGTG 60.002 63.158 0.00 0.00 0.00 3.66
2331 2364 2.361230 GCACCCCCTTACCTGTGC 60.361 66.667 0.00 0.00 46.09 4.57
2332 2365 3.166434 CACCCCCTTACCTGTGCA 58.834 61.111 0.00 0.00 0.00 4.57
2333 2366 1.303317 CACCCCCTTACCTGTGCAC 60.303 63.158 10.75 10.75 0.00 4.57
2334 2367 2.046314 CCCCCTTACCTGTGCACG 60.046 66.667 13.13 7.03 0.00 5.34
2335 2368 2.046314 CCCCTTACCTGTGCACGG 60.046 66.667 19.25 19.25 0.00 4.94
2337 2370 2.746277 CCTTACCTGTGCACGGGC 60.746 66.667 39.11 0.34 46.43 6.13
2353 2386 4.821589 GCAGTTAGAGCCGCGCCT 62.822 66.667 0.00 0.00 0.00 5.52
2354 2387 2.887568 CAGTTAGAGCCGCGCCTG 60.888 66.667 0.00 0.00 0.00 4.85
2355 2388 4.821589 AGTTAGAGCCGCGCCTGC 62.822 66.667 0.00 4.87 37.91 4.85
2367 2400 3.127533 GCCTGCGGCCACACTTAG 61.128 66.667 2.24 0.00 44.06 2.18
2368 2401 3.127533 CCTGCGGCCACACTTAGC 61.128 66.667 2.24 0.00 0.00 3.09
2369 2402 2.358615 CTGCGGCCACACTTAGCA 60.359 61.111 2.24 0.46 36.34 3.49
2370 2403 2.358615 TGCGGCCACACTTAGCAG 60.359 61.111 2.24 0.00 33.57 4.24
2371 2404 3.127533 GCGGCCACACTTAGCAGG 61.128 66.667 2.24 0.00 0.00 4.85
2372 2405 2.436646 CGGCCACACTTAGCAGGG 60.437 66.667 2.24 0.00 0.00 4.45
2373 2406 2.751837 GGCCACACTTAGCAGGGC 60.752 66.667 0.00 0.00 43.86 5.19
2374 2407 2.034066 GCCACACTTAGCAGGGCA 59.966 61.111 0.00 0.00 44.01 5.36
2375 2408 1.603455 GCCACACTTAGCAGGGCAA 60.603 57.895 0.00 0.00 44.01 4.52
2376 2409 1.178534 GCCACACTTAGCAGGGCAAA 61.179 55.000 0.00 0.00 44.01 3.68
2377 2410 0.883833 CCACACTTAGCAGGGCAAAG 59.116 55.000 0.00 0.00 0.00 2.77
2378 2411 1.545428 CCACACTTAGCAGGGCAAAGA 60.545 52.381 0.00 0.00 0.00 2.52
2379 2412 2.229792 CACACTTAGCAGGGCAAAGAA 58.770 47.619 0.00 0.00 0.00 2.52
2380 2413 2.227388 CACACTTAGCAGGGCAAAGAAG 59.773 50.000 0.00 0.00 0.00 2.85
2381 2414 1.815003 CACTTAGCAGGGCAAAGAAGG 59.185 52.381 0.00 0.00 0.00 3.46
2382 2415 1.272147 ACTTAGCAGGGCAAAGAAGGG 60.272 52.381 0.00 0.00 0.00 3.95
2383 2416 1.004745 CTTAGCAGGGCAAAGAAGGGA 59.995 52.381 0.00 0.00 0.00 4.20
2384 2417 0.620556 TAGCAGGGCAAAGAAGGGAG 59.379 55.000 0.00 0.00 0.00 4.30
2385 2418 1.680314 GCAGGGCAAAGAAGGGAGG 60.680 63.158 0.00 0.00 0.00 4.30
2386 2419 1.680314 CAGGGCAAAGAAGGGAGGC 60.680 63.158 0.00 0.00 0.00 4.70
2387 2420 2.363018 GGGCAAAGAAGGGAGGCC 60.363 66.667 0.00 0.00 43.86 5.19
2388 2421 2.751837 GGCAAAGAAGGGAGGCCG 60.752 66.667 0.00 0.00 34.56 6.13
2389 2422 2.351276 GCAAAGAAGGGAGGCCGA 59.649 61.111 0.00 0.00 0.00 5.54
2390 2423 1.303317 GCAAAGAAGGGAGGCCGAA 60.303 57.895 0.00 0.00 0.00 4.30
2391 2424 1.308783 GCAAAGAAGGGAGGCCGAAG 61.309 60.000 0.00 0.00 0.00 3.79
2392 2425 1.002011 AAAGAAGGGAGGCCGAAGC 60.002 57.895 0.00 0.00 38.76 3.86
2393 2426 1.492993 AAAGAAGGGAGGCCGAAGCT 61.493 55.000 0.00 0.00 39.73 3.74
2394 2427 0.617820 AAGAAGGGAGGCCGAAGCTA 60.618 55.000 0.00 0.00 39.73 3.32
2395 2428 1.045911 AGAAGGGAGGCCGAAGCTAG 61.046 60.000 0.00 0.00 39.73 3.42
2396 2429 1.001760 AAGGGAGGCCGAAGCTAGA 59.998 57.895 0.00 0.00 39.73 2.43
2397 2430 0.617820 AAGGGAGGCCGAAGCTAGAA 60.618 55.000 0.00 0.00 39.73 2.10
2398 2431 1.045911 AGGGAGGCCGAAGCTAGAAG 61.046 60.000 0.00 0.00 39.73 2.85
2399 2432 1.043673 GGGAGGCCGAAGCTAGAAGA 61.044 60.000 0.00 0.00 39.73 2.87
2400 2433 0.103390 GGAGGCCGAAGCTAGAAGAC 59.897 60.000 0.00 0.00 39.73 3.01
2401 2434 0.103390 GAGGCCGAAGCTAGAAGACC 59.897 60.000 0.00 0.00 39.73 3.85
2402 2435 0.614979 AGGCCGAAGCTAGAAGACCA 60.615 55.000 0.00 0.00 39.73 4.02
2403 2436 0.466124 GGCCGAAGCTAGAAGACCAT 59.534 55.000 0.00 0.00 39.73 3.55
2404 2437 1.539280 GGCCGAAGCTAGAAGACCATC 60.539 57.143 0.00 0.00 39.73 3.51
2405 2438 1.137086 GCCGAAGCTAGAAGACCATCA 59.863 52.381 0.00 0.00 35.50 3.07
2406 2439 2.418746 GCCGAAGCTAGAAGACCATCAA 60.419 50.000 0.00 0.00 35.50 2.57
2407 2440 3.861840 CCGAAGCTAGAAGACCATCAAA 58.138 45.455 0.00 0.00 0.00 2.69
2408 2441 4.253685 CCGAAGCTAGAAGACCATCAAAA 58.746 43.478 0.00 0.00 0.00 2.44
2409 2442 4.093556 CCGAAGCTAGAAGACCATCAAAAC 59.906 45.833 0.00 0.00 0.00 2.43
2410 2443 4.690748 CGAAGCTAGAAGACCATCAAAACA 59.309 41.667 0.00 0.00 0.00 2.83
2411 2444 5.179368 CGAAGCTAGAAGACCATCAAAACAA 59.821 40.000 0.00 0.00 0.00 2.83
2412 2445 6.566197 AAGCTAGAAGACCATCAAAACAAG 57.434 37.500 0.00 0.00 0.00 3.16
2413 2446 5.006386 AGCTAGAAGACCATCAAAACAAGG 58.994 41.667 0.00 0.00 0.00 3.61
2414 2447 4.379918 GCTAGAAGACCATCAAAACAAGGC 60.380 45.833 0.00 0.00 0.00 4.35
2415 2448 2.893489 AGAAGACCATCAAAACAAGGCC 59.107 45.455 0.00 0.00 0.00 5.19
2416 2449 2.380064 AGACCATCAAAACAAGGCCA 57.620 45.000 5.01 0.00 0.00 5.36
2417 2450 2.676748 AGACCATCAAAACAAGGCCAA 58.323 42.857 5.01 0.00 0.00 4.52
2418 2451 2.629617 AGACCATCAAAACAAGGCCAAG 59.370 45.455 5.01 0.00 0.00 3.61
2419 2452 2.627699 GACCATCAAAACAAGGCCAAGA 59.372 45.455 5.01 0.00 0.00 3.02
2420 2453 2.365293 ACCATCAAAACAAGGCCAAGAC 59.635 45.455 5.01 0.00 0.00 3.01
2421 2454 2.289010 CCATCAAAACAAGGCCAAGACC 60.289 50.000 5.01 0.00 0.00 3.85
2422 2455 2.151502 TCAAAACAAGGCCAAGACCA 57.848 45.000 5.01 0.00 0.00 4.02
2423 2456 2.461695 TCAAAACAAGGCCAAGACCAA 58.538 42.857 5.01 0.00 0.00 3.67
2424 2457 2.834549 TCAAAACAAGGCCAAGACCAAA 59.165 40.909 5.01 0.00 0.00 3.28
2425 2458 3.261897 TCAAAACAAGGCCAAGACCAAAA 59.738 39.130 5.01 0.00 0.00 2.44
2426 2459 3.990959 AAACAAGGCCAAGACCAAAAA 57.009 38.095 5.01 0.00 0.00 1.94
2427 2460 2.979814 ACAAGGCCAAGACCAAAAAC 57.020 45.000 5.01 0.00 0.00 2.43
2428 2461 2.466846 ACAAGGCCAAGACCAAAAACT 58.533 42.857 5.01 0.00 0.00 2.66
2429 2462 2.837591 ACAAGGCCAAGACCAAAAACTT 59.162 40.909 5.01 0.00 0.00 2.66
2430 2463 4.027437 ACAAGGCCAAGACCAAAAACTTA 58.973 39.130 5.01 0.00 0.00 2.24
2431 2464 4.468153 ACAAGGCCAAGACCAAAAACTTAA 59.532 37.500 5.01 0.00 0.00 1.85
2432 2465 5.046231 ACAAGGCCAAGACCAAAAACTTAAA 60.046 36.000 5.01 0.00 0.00 1.52
2433 2466 5.276461 AGGCCAAGACCAAAAACTTAAAG 57.724 39.130 5.01 0.00 0.00 1.85
2434 2467 4.959839 AGGCCAAGACCAAAAACTTAAAGA 59.040 37.500 5.01 0.00 0.00 2.52
2435 2468 5.069119 AGGCCAAGACCAAAAACTTAAAGAG 59.931 40.000 5.01 0.00 0.00 2.85
2436 2469 4.745125 GCCAAGACCAAAAACTTAAAGAGC 59.255 41.667 0.00 0.00 0.00 4.09
2437 2470 5.681179 GCCAAGACCAAAAACTTAAAGAGCA 60.681 40.000 0.00 0.00 0.00 4.26
2438 2471 6.337356 CCAAGACCAAAAACTTAAAGAGCAA 58.663 36.000 0.00 0.00 0.00 3.91
2439 2472 6.255670 CCAAGACCAAAAACTTAAAGAGCAAC 59.744 38.462 0.00 0.00 0.00 4.17
2440 2473 6.524101 AGACCAAAAACTTAAAGAGCAACA 57.476 33.333 0.00 0.00 0.00 3.33
2441 2474 6.564328 AGACCAAAAACTTAAAGAGCAACAG 58.436 36.000 0.00 0.00 0.00 3.16
2442 2475 5.660460 ACCAAAAACTTAAAGAGCAACAGG 58.340 37.500 0.00 0.00 0.00 4.00
2443 2476 5.049828 CCAAAAACTTAAAGAGCAACAGGG 58.950 41.667 0.00 0.00 0.00 4.45
2444 2477 4.322080 AAAACTTAAAGAGCAACAGGGC 57.678 40.909 0.00 0.00 0.00 5.19
2445 2478 1.523758 ACTTAAAGAGCAACAGGGCG 58.476 50.000 0.00 0.00 39.27 6.13
2446 2479 1.071699 ACTTAAAGAGCAACAGGGCGA 59.928 47.619 0.00 0.00 39.27 5.54
2447 2480 1.734465 CTTAAAGAGCAACAGGGCGAG 59.266 52.381 0.00 0.00 39.27 5.03
2448 2481 0.036388 TAAAGAGCAACAGGGCGAGG 60.036 55.000 0.00 0.00 39.27 4.63
2449 2482 2.056906 AAAGAGCAACAGGGCGAGGT 62.057 55.000 0.00 0.00 39.27 3.85
2450 2483 2.738213 AAGAGCAACAGGGCGAGGTG 62.738 60.000 0.00 0.00 39.27 4.00
2451 2484 4.335647 AGCAACAGGGCGAGGTGG 62.336 66.667 0.00 0.00 39.27 4.61
2452 2485 4.329545 GCAACAGGGCGAGGTGGA 62.330 66.667 0.00 0.00 0.00 4.02
2453 2486 2.358737 CAACAGGGCGAGGTGGAC 60.359 66.667 0.00 0.00 0.00 4.02
2454 2487 2.526873 AACAGGGCGAGGTGGACT 60.527 61.111 0.00 0.00 0.00 3.85
2455 2488 2.584391 AACAGGGCGAGGTGGACTC 61.584 63.158 0.00 0.00 43.02 3.36
2456 2489 3.775654 CAGGGCGAGGTGGACTCC 61.776 72.222 0.00 0.00 43.57 3.85
2465 2498 4.410400 GTGGACTCCCCCGGCAAG 62.410 72.222 0.00 0.00 0.00 4.01
2466 2499 4.649705 TGGACTCCCCCGGCAAGA 62.650 66.667 0.00 0.00 0.00 3.02
2467 2500 4.097361 GGACTCCCCCGGCAAGAC 62.097 72.222 0.00 0.00 0.00 3.01
2468 2501 4.097361 GACTCCCCCGGCAAGACC 62.097 72.222 0.00 0.00 0.00 3.85
2471 2504 4.995058 TCCCCCGGCAAGACCCTT 62.995 66.667 0.00 0.00 33.26 3.95
2472 2505 4.740822 CCCCCGGCAAGACCCTTG 62.741 72.222 0.00 2.54 33.26 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.806146 GTTATATTCAATGTATTGCCCCAATCT 58.194 33.333 0.00 0.00 37.68 2.40
184 189 0.960364 CACCATCCCCAGGAAACGTG 60.960 60.000 0.00 0.00 34.34 4.49
194 200 2.188817 AGTCTACTTCACACCATCCCC 58.811 52.381 0.00 0.00 0.00 4.81
277 284 9.589111 ACATGTATACGTAAAATGTCATGTGTA 57.411 29.630 19.28 0.00 41.54 2.90
375 383 7.933396 TCATGCATAGTACATCAAAGAATTGG 58.067 34.615 0.00 0.00 37.15 3.16
441 449 2.241941 ACTGTGGATGTAATGGGCATCA 59.758 45.455 7.46 0.00 43.17 3.07
620 628 6.237306 CGTTGTTGCTTCTTCTCAAAGTTTTC 60.237 38.462 0.00 0.00 33.95 2.29
669 677 4.015084 AGCAATTGACAAGAGATGGGAAG 58.985 43.478 10.34 0.00 0.00 3.46
720 728 5.766590 TCCCTTCTCCTTCTCTTTGTTTTT 58.233 37.500 0.00 0.00 0.00 1.94
751 759 4.085876 GCTCAGGCCACACACATT 57.914 55.556 5.01 0.00 0.00 2.71
836 844 1.751351 TCACTCCTCAGATAGCAACCG 59.249 52.381 0.00 0.00 0.00 4.44
920 928 2.157738 GCCTAAGGCTATGGAATGCTG 58.842 52.381 9.53 0.00 46.69 4.41
1053 1062 1.059913 ACCAGACACTAGGCTGCTTT 58.940 50.000 0.00 0.00 0.00 3.51
1054 1063 0.322975 CACCAGACACTAGGCTGCTT 59.677 55.000 0.00 0.00 0.00 3.91
1128 1137 1.070289 CCATAGTCTTTAGGGTCGGCC 59.930 57.143 0.00 0.00 0.00 6.13
1138 1147 2.851263 TCGTTGCCACCATAGTCTTT 57.149 45.000 0.00 0.00 0.00 2.52
1153 1162 1.798813 CTTCCGCTTGTTAGCTTCGTT 59.201 47.619 0.00 0.00 45.51 3.85
1209 1218 0.530744 CGTCGTCTTCATTCTGGGGA 59.469 55.000 0.00 0.00 0.00 4.81
1369 1381 0.333993 ATCAGCTCCTTTGTGGCCAT 59.666 50.000 9.72 0.00 35.26 4.40
1370 1382 0.609957 CATCAGCTCCTTTGTGGCCA 60.610 55.000 0.00 0.00 35.26 5.36
1563 1576 3.092301 CTCCTTTTGTTTCATCTCCCCC 58.908 50.000 0.00 0.00 0.00 5.40
1619 1637 7.764141 TGCACATTTATTCCATATGTAGCAT 57.236 32.000 1.24 0.00 34.53 3.79
1716 1737 5.009310 TCTCTACCGAAAGCGCTTAATATCA 59.991 40.000 25.33 6.59 35.83 2.15
1757 1778 3.571401 CCTTTGGTTGTCTCAATGAGCTT 59.429 43.478 5.18 0.00 0.00 3.74
1847 1869 8.658499 ATTATGAAATGACTACGGGTAGAAAC 57.342 34.615 12.54 4.70 36.97 2.78
1866 1888 8.421784 GTGAAGTAATGTGGAGAGGTATTATGA 58.578 37.037 0.00 0.00 0.00 2.15
1886 1908 4.716784 TGCCTCATCTTAGTATGGTGAAGT 59.283 41.667 1.11 0.00 0.00 3.01
1890 1912 6.057533 TCAAATGCCTCATCTTAGTATGGTG 58.942 40.000 0.00 0.00 0.00 4.17
1918 1940 1.212935 GGCCACCACAAGTATGGAGAT 59.787 52.381 0.00 0.00 43.02 2.75
2031 2061 8.420222 CACTATCTCAGAGGAAACAGAACATAT 58.580 37.037 0.00 0.00 0.00 1.78
2032 2062 7.397476 ACACTATCTCAGAGGAAACAGAACATA 59.603 37.037 0.00 0.00 0.00 2.29
2085 2115 8.514594 CATGACATACACCAACATCTTACTTTT 58.485 33.333 0.00 0.00 0.00 2.27
2087 2117 7.168219 ACATGACATACACCAACATCTTACTT 58.832 34.615 0.00 0.00 0.00 2.24
2230 2262 9.288576 TGAACAGACAAGACATATGAGAAAAAT 57.711 29.630 10.38 0.00 0.00 1.82
2273 2306 0.315886 TACACCGACAGATGCGTGTT 59.684 50.000 6.34 0.00 0.00 3.32
2283 2316 2.165167 CCCTACTTCTGTACACCGACA 58.835 52.381 0.00 0.00 0.00 4.35
2284 2317 1.475682 CCCCTACTTCTGTACACCGAC 59.524 57.143 0.00 0.00 0.00 4.79
2285 2318 1.843368 CCCCTACTTCTGTACACCGA 58.157 55.000 0.00 0.00 0.00 4.69
2286 2319 0.175073 GCCCCTACTTCTGTACACCG 59.825 60.000 0.00 0.00 0.00 4.94
2287 2320 1.481363 GAGCCCCTACTTCTGTACACC 59.519 57.143 0.00 0.00 0.00 4.16
2288 2321 2.458620 AGAGCCCCTACTTCTGTACAC 58.541 52.381 0.00 0.00 0.00 2.90
2289 2322 2.921834 AGAGCCCCTACTTCTGTACA 57.078 50.000 0.00 0.00 0.00 2.90
2298 2331 0.747852 GTGCAGAGTAGAGCCCCTAC 59.252 60.000 5.91 5.91 46.34 3.18
2299 2332 0.397254 GGTGCAGAGTAGAGCCCCTA 60.397 60.000 0.00 0.00 0.00 3.53
2300 2333 1.687493 GGTGCAGAGTAGAGCCCCT 60.687 63.158 0.00 0.00 0.00 4.79
2301 2334 2.736826 GGGTGCAGAGTAGAGCCCC 61.737 68.421 0.00 0.00 35.23 5.80
2302 2335 2.736826 GGGGTGCAGAGTAGAGCCC 61.737 68.421 0.00 0.00 40.13 5.19
2303 2336 2.736826 GGGGGTGCAGAGTAGAGCC 61.737 68.421 0.00 0.00 0.00 4.70
2304 2337 1.268283 AAGGGGGTGCAGAGTAGAGC 61.268 60.000 0.00 0.00 0.00 4.09
2305 2338 1.757699 GTAAGGGGGTGCAGAGTAGAG 59.242 57.143 0.00 0.00 0.00 2.43
2306 2339 1.621622 GGTAAGGGGGTGCAGAGTAGA 60.622 57.143 0.00 0.00 0.00 2.59
2307 2340 0.831307 GGTAAGGGGGTGCAGAGTAG 59.169 60.000 0.00 0.00 0.00 2.57
2308 2341 0.416231 AGGTAAGGGGGTGCAGAGTA 59.584 55.000 0.00 0.00 0.00 2.59
2309 2342 1.161113 AGGTAAGGGGGTGCAGAGT 59.839 57.895 0.00 0.00 0.00 3.24
2310 2343 1.201429 ACAGGTAAGGGGGTGCAGAG 61.201 60.000 0.00 0.00 0.00 3.35
2311 2344 1.151899 ACAGGTAAGGGGGTGCAGA 60.152 57.895 0.00 0.00 0.00 4.26
2312 2345 1.002134 CACAGGTAAGGGGGTGCAG 60.002 63.158 0.00 0.00 0.00 4.41
2313 2346 3.166434 CACAGGTAAGGGGGTGCA 58.834 61.111 0.00 0.00 0.00 4.57
2315 2348 1.303317 GTGCACAGGTAAGGGGGTG 60.303 63.158 13.17 0.00 0.00 4.61
2316 2349 2.890766 CGTGCACAGGTAAGGGGGT 61.891 63.158 18.64 0.00 0.00 4.95
2317 2350 2.046314 CGTGCACAGGTAAGGGGG 60.046 66.667 18.64 0.00 0.00 5.40
2318 2351 2.046314 CCGTGCACAGGTAAGGGG 60.046 66.667 18.64 2.99 0.00 4.79
2319 2352 2.046314 CCCGTGCACAGGTAAGGG 60.046 66.667 18.64 14.08 41.46 3.95
2320 2353 2.746277 GCCCGTGCACAGGTAAGG 60.746 66.667 20.15 9.90 37.47 2.69
2321 2354 2.031919 TGCCCGTGCACAGGTAAG 59.968 61.111 20.15 8.98 44.23 2.34
2322 2355 2.031919 CTGCCCGTGCACAGGTAA 59.968 61.111 20.15 8.50 44.23 2.85
2323 2356 1.473497 TAACTGCCCGTGCACAGGTA 61.473 55.000 20.15 15.06 44.23 3.08
2324 2357 2.731691 CTAACTGCCCGTGCACAGGT 62.732 60.000 20.15 9.31 44.23 4.00
2325 2358 2.031919 TAACTGCCCGTGCACAGG 59.968 61.111 18.64 16.88 44.23 4.00
2326 2359 1.005037 TCTAACTGCCCGTGCACAG 60.005 57.895 18.64 9.13 44.23 3.66
2327 2360 1.005037 CTCTAACTGCCCGTGCACA 60.005 57.895 18.64 0.00 44.23 4.57
2328 2361 2.391389 GCTCTAACTGCCCGTGCAC 61.391 63.158 6.82 6.82 44.23 4.57
2330 2363 2.820037 GGCTCTAACTGCCCGTGC 60.820 66.667 0.00 0.00 44.32 5.34
2336 2369 4.821589 AGGCGCGGCTCTAACTGC 62.822 66.667 31.39 0.00 38.63 4.40
2337 2370 2.887568 CAGGCGCGGCTCTAACTG 60.888 66.667 34.16 17.78 0.00 3.16
2338 2371 4.821589 GCAGGCGCGGCTCTAACT 62.822 66.667 34.16 8.38 0.00 2.24
2352 2385 2.358615 TGCTAAGTGTGGCCGCAG 60.359 61.111 21.93 9.28 0.00 5.18
2353 2386 2.358615 CTGCTAAGTGTGGCCGCA 60.359 61.111 16.89 16.89 0.00 5.69
2354 2387 3.127533 CCTGCTAAGTGTGGCCGC 61.128 66.667 10.11 10.11 0.00 6.53
2355 2388 2.436646 CCCTGCTAAGTGTGGCCG 60.437 66.667 0.00 0.00 0.00 6.13
2356 2389 2.751837 GCCCTGCTAAGTGTGGCC 60.752 66.667 0.00 0.00 36.07 5.36
2357 2390 1.178534 TTTGCCCTGCTAAGTGTGGC 61.179 55.000 0.00 0.00 42.49 5.01
2358 2391 0.883833 CTTTGCCCTGCTAAGTGTGG 59.116 55.000 2.73 0.00 36.83 4.17
2359 2392 1.896220 TCTTTGCCCTGCTAAGTGTG 58.104 50.000 9.44 0.00 40.91 3.82
2360 2393 2.508526 CTTCTTTGCCCTGCTAAGTGT 58.491 47.619 9.44 0.00 40.91 3.55
2361 2394 1.815003 CCTTCTTTGCCCTGCTAAGTG 59.185 52.381 9.44 5.20 40.91 3.16
2362 2395 1.272147 CCCTTCTTTGCCCTGCTAAGT 60.272 52.381 9.44 0.00 40.91 2.24
2363 2396 1.004745 TCCCTTCTTTGCCCTGCTAAG 59.995 52.381 4.26 4.26 41.31 2.18
2364 2397 1.004745 CTCCCTTCTTTGCCCTGCTAA 59.995 52.381 0.00 0.00 0.00 3.09
2365 2398 0.620556 CTCCCTTCTTTGCCCTGCTA 59.379 55.000 0.00 0.00 0.00 3.49
2366 2399 1.381851 CTCCCTTCTTTGCCCTGCT 59.618 57.895 0.00 0.00 0.00 4.24
2367 2400 1.680314 CCTCCCTTCTTTGCCCTGC 60.680 63.158 0.00 0.00 0.00 4.85
2368 2401 1.680314 GCCTCCCTTCTTTGCCCTG 60.680 63.158 0.00 0.00 0.00 4.45
2369 2402 2.766660 GCCTCCCTTCTTTGCCCT 59.233 61.111 0.00 0.00 0.00 5.19
2370 2403 2.363018 GGCCTCCCTTCTTTGCCC 60.363 66.667 0.00 0.00 36.07 5.36
2371 2404 2.751837 CGGCCTCCCTTCTTTGCC 60.752 66.667 0.00 0.00 38.74 4.52
2372 2405 1.303317 TTCGGCCTCCCTTCTTTGC 60.303 57.895 0.00 0.00 0.00 3.68
2373 2406 1.308783 GCTTCGGCCTCCCTTCTTTG 61.309 60.000 0.00 0.00 34.32 2.77
2374 2407 1.002011 GCTTCGGCCTCCCTTCTTT 60.002 57.895 0.00 0.00 34.32 2.52
2375 2408 0.617820 TAGCTTCGGCCTCCCTTCTT 60.618 55.000 0.00 0.00 43.01 2.52
2376 2409 1.001760 TAGCTTCGGCCTCCCTTCT 59.998 57.895 0.00 0.00 43.01 2.85
2377 2410 1.043673 TCTAGCTTCGGCCTCCCTTC 61.044 60.000 0.00 0.00 43.01 3.46
2378 2411 0.617820 TTCTAGCTTCGGCCTCCCTT 60.618 55.000 0.00 0.00 43.01 3.95
2379 2412 1.001760 TTCTAGCTTCGGCCTCCCT 59.998 57.895 0.00 0.00 43.01 4.20
2380 2413 1.043673 TCTTCTAGCTTCGGCCTCCC 61.044 60.000 0.00 0.00 43.01 4.30
2381 2414 0.103390 GTCTTCTAGCTTCGGCCTCC 59.897 60.000 0.00 0.00 43.01 4.30
2382 2415 0.103390 GGTCTTCTAGCTTCGGCCTC 59.897 60.000 0.00 0.00 43.01 4.70
2383 2416 0.614979 TGGTCTTCTAGCTTCGGCCT 60.615 55.000 0.00 0.00 43.01 5.19
2384 2417 0.466124 ATGGTCTTCTAGCTTCGGCC 59.534 55.000 0.00 0.00 43.01 6.13
2385 2418 1.137086 TGATGGTCTTCTAGCTTCGGC 59.863 52.381 0.00 0.00 42.17 5.54
2386 2419 3.526931 TTGATGGTCTTCTAGCTTCGG 57.473 47.619 0.00 0.00 33.60 4.30
2387 2420 4.690748 TGTTTTGATGGTCTTCTAGCTTCG 59.309 41.667 0.00 0.00 33.60 3.79
2388 2421 6.348868 CCTTGTTTTGATGGTCTTCTAGCTTC 60.349 42.308 0.00 0.00 0.00 3.86
2389 2422 5.474876 CCTTGTTTTGATGGTCTTCTAGCTT 59.525 40.000 0.00 0.00 0.00 3.74
2390 2423 5.006386 CCTTGTTTTGATGGTCTTCTAGCT 58.994 41.667 0.00 0.00 0.00 3.32
2391 2424 4.379918 GCCTTGTTTTGATGGTCTTCTAGC 60.380 45.833 0.00 0.00 0.00 3.42
2392 2425 4.156739 GGCCTTGTTTTGATGGTCTTCTAG 59.843 45.833 0.00 0.00 0.00 2.43
2393 2426 4.079253 GGCCTTGTTTTGATGGTCTTCTA 58.921 43.478 0.00 0.00 0.00 2.10
2394 2427 2.893489 GGCCTTGTTTTGATGGTCTTCT 59.107 45.455 0.00 0.00 0.00 2.85
2395 2428 2.627699 TGGCCTTGTTTTGATGGTCTTC 59.372 45.455 3.32 0.00 0.00 2.87
2396 2429 2.676748 TGGCCTTGTTTTGATGGTCTT 58.323 42.857 3.32 0.00 0.00 3.01
2397 2430 2.380064 TGGCCTTGTTTTGATGGTCT 57.620 45.000 3.32 0.00 0.00 3.85
2398 2431 2.627699 TCTTGGCCTTGTTTTGATGGTC 59.372 45.455 3.32 0.00 0.00 4.02
2399 2432 2.365293 GTCTTGGCCTTGTTTTGATGGT 59.635 45.455 3.32 0.00 0.00 3.55
2400 2433 2.289010 GGTCTTGGCCTTGTTTTGATGG 60.289 50.000 3.32 0.00 0.00 3.51
2401 2434 2.364970 TGGTCTTGGCCTTGTTTTGATG 59.635 45.455 3.32 0.00 0.00 3.07
2402 2435 2.676748 TGGTCTTGGCCTTGTTTTGAT 58.323 42.857 3.32 0.00 0.00 2.57
2403 2436 2.151502 TGGTCTTGGCCTTGTTTTGA 57.848 45.000 3.32 0.00 0.00 2.69
2404 2437 2.977772 TTGGTCTTGGCCTTGTTTTG 57.022 45.000 3.32 0.00 0.00 2.44
2405 2438 3.990959 TTTTGGTCTTGGCCTTGTTTT 57.009 38.095 3.32 0.00 0.00 2.43
2406 2439 3.263170 AGTTTTTGGTCTTGGCCTTGTTT 59.737 39.130 3.32 0.00 0.00 2.83
2407 2440 2.837591 AGTTTTTGGTCTTGGCCTTGTT 59.162 40.909 3.32 0.00 0.00 2.83
2408 2441 2.466846 AGTTTTTGGTCTTGGCCTTGT 58.533 42.857 3.32 0.00 0.00 3.16
2409 2442 3.541996 AAGTTTTTGGTCTTGGCCTTG 57.458 42.857 3.32 0.00 0.00 3.61
2410 2443 5.423931 TCTTTAAGTTTTTGGTCTTGGCCTT 59.576 36.000 3.32 0.00 0.00 4.35
2411 2444 4.959839 TCTTTAAGTTTTTGGTCTTGGCCT 59.040 37.500 3.32 0.00 0.00 5.19
2412 2445 5.270893 TCTTTAAGTTTTTGGTCTTGGCC 57.729 39.130 0.00 0.00 0.00 5.36
2413 2446 4.745125 GCTCTTTAAGTTTTTGGTCTTGGC 59.255 41.667 0.00 0.00 0.00 4.52
2414 2447 5.901552 TGCTCTTTAAGTTTTTGGTCTTGG 58.098 37.500 0.00 0.00 0.00 3.61
2415 2448 6.811170 TGTTGCTCTTTAAGTTTTTGGTCTTG 59.189 34.615 0.00 0.00 0.00 3.02
2416 2449 6.930731 TGTTGCTCTTTAAGTTTTTGGTCTT 58.069 32.000 0.00 0.00 0.00 3.01
2417 2450 6.405842 CCTGTTGCTCTTTAAGTTTTTGGTCT 60.406 38.462 0.00 0.00 0.00 3.85
2418 2451 5.748630 CCTGTTGCTCTTTAAGTTTTTGGTC 59.251 40.000 0.00 0.00 0.00 4.02
2419 2452 5.395214 CCCTGTTGCTCTTTAAGTTTTTGGT 60.395 40.000 0.00 0.00 0.00 3.67
2420 2453 5.049828 CCCTGTTGCTCTTTAAGTTTTTGG 58.950 41.667 0.00 0.00 0.00 3.28
2421 2454 4.507756 GCCCTGTTGCTCTTTAAGTTTTTG 59.492 41.667 0.00 0.00 0.00 2.44
2422 2455 4.693283 GCCCTGTTGCTCTTTAAGTTTTT 58.307 39.130 0.00 0.00 0.00 1.94
2423 2456 3.243401 CGCCCTGTTGCTCTTTAAGTTTT 60.243 43.478 0.00 0.00 0.00 2.43
2424 2457 2.293399 CGCCCTGTTGCTCTTTAAGTTT 59.707 45.455 0.00 0.00 0.00 2.66
2425 2458 1.880027 CGCCCTGTTGCTCTTTAAGTT 59.120 47.619 0.00 0.00 0.00 2.66
2426 2459 1.071699 TCGCCCTGTTGCTCTTTAAGT 59.928 47.619 0.00 0.00 0.00 2.24
2427 2460 1.734465 CTCGCCCTGTTGCTCTTTAAG 59.266 52.381 0.00 0.00 0.00 1.85
2428 2461 1.610624 CCTCGCCCTGTTGCTCTTTAA 60.611 52.381 0.00 0.00 0.00 1.52
2429 2462 0.036388 CCTCGCCCTGTTGCTCTTTA 60.036 55.000 0.00 0.00 0.00 1.85
2430 2463 1.302832 CCTCGCCCTGTTGCTCTTT 60.303 57.895 0.00 0.00 0.00 2.52
2431 2464 2.348998 CCTCGCCCTGTTGCTCTT 59.651 61.111 0.00 0.00 0.00 2.85
2432 2465 2.925170 ACCTCGCCCTGTTGCTCT 60.925 61.111 0.00 0.00 0.00 4.09
2433 2466 2.743928 CACCTCGCCCTGTTGCTC 60.744 66.667 0.00 0.00 0.00 4.26
2434 2467 4.335647 CCACCTCGCCCTGTTGCT 62.336 66.667 0.00 0.00 0.00 3.91
2435 2468 4.329545 TCCACCTCGCCCTGTTGC 62.330 66.667 0.00 0.00 0.00 4.17
2436 2469 2.358737 GTCCACCTCGCCCTGTTG 60.359 66.667 0.00 0.00 0.00 3.33
2437 2470 2.526873 AGTCCACCTCGCCCTGTT 60.527 61.111 0.00 0.00 0.00 3.16
2438 2471 2.997897 GAGTCCACCTCGCCCTGT 60.998 66.667 0.00 0.00 0.00 4.00
2439 2472 3.775654 GGAGTCCACCTCGCCCTG 61.776 72.222 3.60 0.00 41.46 4.45
2448 2481 4.410400 CTTGCCGGGGGAGTCCAC 62.410 72.222 12.30 7.34 37.22 4.02
2449 2482 4.649705 TCTTGCCGGGGGAGTCCA 62.650 66.667 12.30 0.00 37.22 4.02
2450 2483 4.097361 GTCTTGCCGGGGGAGTCC 62.097 72.222 2.18 0.00 0.00 3.85
2451 2484 4.097361 GGTCTTGCCGGGGGAGTC 62.097 72.222 2.18 0.00 0.00 3.36
2454 2487 4.995058 AAGGGTCTTGCCGGGGGA 62.995 66.667 2.18 0.00 38.44 4.81
2455 2488 4.740822 CAAGGGTCTTGCCGGGGG 62.741 72.222 2.18 0.00 38.44 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.