Multiple sequence alignment - TraesCS6B01G123300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G123300 chr6B 100.000 3139 0 0 1352 4490 118192372 118189234 0.000000e+00 5797.0
1 TraesCS6B01G123300 chr6B 100.000 1088 0 0 1 1088 118193723 118192636 0.000000e+00 2010.0
2 TraesCS6B01G123300 chr6B 100.000 240 0 0 4825 5064 118188899 118188660 1.290000e-120 444.0
3 TraesCS6B01G123300 chr6A 97.190 3132 82 4 1352 4482 61880759 61877633 0.000000e+00 5291.0
4 TraesCS6B01G123300 chr6A 97.281 331 7 2 758 1088 61881161 61880833 1.230000e-155 560.0
5 TraesCS6B01G123300 chr6A 88.417 259 8 4 4828 5064 61877605 61877347 4.960000e-75 292.0
6 TraesCS6B01G123300 chr6A 82.593 270 36 7 510 771 61882795 61882529 1.420000e-55 228.0
7 TraesCS6B01G123300 chr6D 95.181 3154 107 21 1366 4481 53560246 53563392 0.000000e+00 4940.0
8 TraesCS6B01G123300 chr6D 87.250 651 52 15 450 1088 53559109 53559740 0.000000e+00 713.0
9 TraesCS6B01G123300 chr6D 82.671 277 10 25 4825 5064 53563402 53563677 1.430000e-50 211.0
10 TraesCS6B01G123300 chr3D 78.155 206 34 9 5 200 411441986 411442190 2.480000e-23 121.0
11 TraesCS6B01G123300 chr3A 93.590 78 5 0 5 82 539372056 539371979 3.200000e-22 117.0
12 TraesCS6B01G123300 chr3B 75.610 205 40 7 5 200 537844104 537844307 5.400000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G123300 chr6B 118188660 118193723 5063 True 2750.333333 5797 100.000000 1 5064 3 chr6B.!!$R1 5063
1 TraesCS6B01G123300 chr6A 61877347 61882795 5448 True 1592.750000 5291 91.370250 510 5064 4 chr6A.!!$R1 4554
2 TraesCS6B01G123300 chr6D 53559109 53563677 4568 False 1954.666667 4940 88.367333 450 5064 3 chr6D.!!$F1 4614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 0.030908 GTAGATCGAGGGCAAGGACG 59.969 60.000 0.00 0.0 0.00 4.79 F
323 324 0.106868 TAGATCGAGGGCAAGGACGA 60.107 55.000 0.00 0.0 39.01 4.20 F
342 343 0.179051 ACGACAACCGGCCAGTTTTA 60.179 50.000 0.19 0.0 43.93 1.52 F
2077 3885 0.036105 TTGATGTGATGCTCAGCGGT 60.036 50.000 0.00 0.0 0.00 5.68 F
2914 4722 1.674962 GGCAAGACATCTTCAGCCATC 59.325 52.381 14.91 0.0 41.81 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 3870 0.035317 AGAAACCGCTGAGCATCACA 59.965 50.000 4.88 0.0 42.56 3.58 R
2077 3885 0.394216 CCATCCCGGCATCACAGAAA 60.394 55.000 0.00 0.0 0.00 2.52 R
2281 4089 2.092429 GCCCTCCTTACACAATCCATCA 60.092 50.000 0.00 0.0 0.00 3.07 R
3613 5421 0.107703 CATGCTTCCGGCTTCCAGTA 60.108 55.000 0.00 0.0 42.39 2.74 R
4393 6238 4.680237 CTCCGTTGCAGCCGTCCA 62.680 66.667 7.03 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.667420 GAACGACGAGGCCTTCAA 57.333 55.556 6.77 0.00 0.00 2.69
18 19 2.446341 GAACGACGAGGCCTTCAAG 58.554 57.895 6.77 1.72 0.00 3.02
19 20 0.038526 GAACGACGAGGCCTTCAAGA 60.039 55.000 6.77 0.00 0.00 3.02
20 21 0.391597 AACGACGAGGCCTTCAAGAA 59.608 50.000 6.77 0.00 0.00 2.52
21 22 0.038159 ACGACGAGGCCTTCAAGAAG 60.038 55.000 6.77 2.83 38.14 2.85
31 32 2.663826 CTTCAAGAAGGTCCTCGAGG 57.336 55.000 26.32 26.32 34.87 4.63
32 33 2.171840 CTTCAAGAAGGTCCTCGAGGA 58.828 52.381 30.49 30.49 37.01 3.71
40 41 2.359404 TCCTCGAGGACTCCCACC 59.641 66.667 30.49 0.00 39.78 4.61
41 42 2.239439 TCCTCGAGGACTCCCACCT 61.239 63.158 30.49 0.00 39.78 4.00
45 46 3.605895 GAGGACTCCCACCTCGAC 58.394 66.667 0.00 0.00 43.25 4.20
46 47 2.361357 AGGACTCCCACCTCGACG 60.361 66.667 0.00 0.00 31.43 5.12
47 48 2.360852 GGACTCCCACCTCGACGA 60.361 66.667 0.00 0.00 0.00 4.20
48 49 2.408241 GGACTCCCACCTCGACGAG 61.408 68.421 18.08 18.08 0.00 4.18
49 50 3.053849 GACTCCCACCTCGACGAGC 62.054 68.421 19.55 0.00 0.00 5.03
50 51 2.752238 CTCCCACCTCGACGAGCT 60.752 66.667 19.55 2.64 0.00 4.09
51 52 2.750637 TCCCACCTCGACGAGCTC 60.751 66.667 19.55 2.73 0.00 4.09
52 53 4.180946 CCCACCTCGACGAGCTCG 62.181 72.222 33.45 33.45 44.44 5.03
53 54 4.838486 CCACCTCGACGAGCTCGC 62.838 72.222 34.83 24.94 42.62 5.03
54 55 4.838486 CACCTCGACGAGCTCGCC 62.838 72.222 34.83 24.57 42.62 5.54
57 58 4.544689 CTCGACGAGCTCGCCCAG 62.545 72.222 34.83 19.55 42.62 4.45
60 61 4.803426 GACGAGCTCGCCCAGTGG 62.803 72.222 34.83 0.63 44.43 4.00
62 63 4.803426 CGAGCTCGCCCAGTGGTC 62.803 72.222 25.07 0.00 37.46 4.02
63 64 3.386237 GAGCTCGCCCAGTGGTCT 61.386 66.667 8.74 0.00 37.73 3.85
64 65 3.655810 GAGCTCGCCCAGTGGTCTG 62.656 68.421 8.74 0.00 41.01 3.51
72 73 3.150949 CAGTGGTCTGGCCTGTCA 58.849 61.111 3.32 4.30 37.97 3.58
73 74 1.302033 CAGTGGTCTGGCCTGTCAC 60.302 63.158 21.47 21.47 37.97 3.67
74 75 1.460305 AGTGGTCTGGCCTGTCACT 60.460 57.895 24.00 24.00 38.35 3.41
75 76 1.302033 GTGGTCTGGCCTGTCACTG 60.302 63.158 21.61 0.92 38.35 3.66
76 77 2.348998 GGTCTGGCCTGTCACTGG 59.651 66.667 3.32 0.00 0.00 4.00
77 78 2.359230 GTCTGGCCTGTCACTGGC 60.359 66.667 17.27 17.27 45.73 4.85
107 108 2.869646 CGCTTTCGCCATGCTTGA 59.130 55.556 0.22 0.00 0.00 3.02
108 109 1.226211 CGCTTTCGCCATGCTTGAG 60.226 57.895 0.22 0.00 0.00 3.02
109 110 1.515736 GCTTTCGCCATGCTTGAGC 60.516 57.895 0.22 2.42 42.50 4.26
110 111 1.138247 CTTTCGCCATGCTTGAGCC 59.862 57.895 0.22 0.00 41.18 4.70
111 112 1.303561 TTTCGCCATGCTTGAGCCT 60.304 52.632 0.22 0.00 41.18 4.58
112 113 1.588824 TTTCGCCATGCTTGAGCCTG 61.589 55.000 0.22 0.90 41.18 4.85
113 114 2.437180 CGCCATGCTTGAGCCTGA 60.437 61.111 9.44 0.00 38.67 3.86
114 115 2.470362 CGCCATGCTTGAGCCTGAG 61.470 63.158 9.44 2.29 38.67 3.35
115 116 1.378250 GCCATGCTTGAGCCTGAGT 60.378 57.895 9.44 0.00 38.67 3.41
116 117 1.375098 GCCATGCTTGAGCCTGAGTC 61.375 60.000 9.44 0.00 38.67 3.36
117 118 1.088340 CCATGCTTGAGCCTGAGTCG 61.088 60.000 9.44 0.00 38.67 4.18
118 119 0.390866 CATGCTTGAGCCTGAGTCGT 60.391 55.000 2.57 0.00 38.67 4.34
119 120 0.390866 ATGCTTGAGCCTGAGTCGTG 60.391 55.000 0.00 0.00 41.18 4.35
120 121 1.739562 GCTTGAGCCTGAGTCGTGG 60.740 63.158 0.00 0.00 34.31 4.94
125 126 4.008933 GCCTGAGTCGTGGCCACT 62.009 66.667 32.28 15.43 43.11 4.00
126 127 2.743718 CCTGAGTCGTGGCCACTT 59.256 61.111 32.28 18.23 0.00 3.16
127 128 1.669115 CCTGAGTCGTGGCCACTTG 60.669 63.158 32.28 18.72 0.00 3.16
128 129 2.280797 TGAGTCGTGGCCACTTGC 60.281 61.111 32.28 21.07 40.16 4.01
129 130 3.414700 GAGTCGTGGCCACTTGCG 61.415 66.667 32.28 20.07 42.61 4.85
130 131 4.235762 AGTCGTGGCCACTTGCGT 62.236 61.111 32.28 10.53 42.61 5.24
131 132 3.712881 GTCGTGGCCACTTGCGTC 61.713 66.667 32.28 14.07 42.61 5.19
135 136 3.997397 TGGCCACTTGCGTCGCTA 61.997 61.111 19.50 10.26 42.61 4.26
136 137 3.188786 GGCCACTTGCGTCGCTAG 61.189 66.667 23.99 23.99 42.61 3.42
137 138 2.432628 GCCACTTGCGTCGCTAGT 60.433 61.111 25.28 25.28 44.39 2.57
140 141 2.261671 ACTTGCGTCGCTAGTGGG 59.738 61.111 28.98 8.58 42.28 4.61
141 142 2.509336 CTTGCGTCGCTAGTGGGG 60.509 66.667 19.50 0.00 0.00 4.96
142 143 4.752879 TTGCGTCGCTAGTGGGGC 62.753 66.667 19.50 7.89 0.00 5.80
149 150 3.524606 GCTAGTGGGGCGCTCGTA 61.525 66.667 7.64 0.00 0.00 3.43
150 151 2.722487 CTAGTGGGGCGCTCGTAG 59.278 66.667 7.64 0.91 0.00 3.51
151 152 2.044650 TAGTGGGGCGCTCGTAGT 60.045 61.111 7.64 0.88 0.00 2.73
152 153 2.061182 CTAGTGGGGCGCTCGTAGTC 62.061 65.000 7.64 0.00 0.00 2.59
153 154 4.849329 GTGGGGCGCTCGTAGTCG 62.849 72.222 7.64 0.00 38.55 4.18
155 156 4.849329 GGGGCGCTCGTAGTCGTG 62.849 72.222 7.64 0.00 38.33 4.35
156 157 4.849329 GGGCGCTCGTAGTCGTGG 62.849 72.222 7.64 0.00 38.33 4.94
157 158 3.807538 GGCGCTCGTAGTCGTGGA 61.808 66.667 7.64 0.00 38.33 4.02
158 159 2.576317 GCGCTCGTAGTCGTGGAC 60.576 66.667 0.00 0.00 38.33 4.02
159 160 2.276493 CGCTCGTAGTCGTGGACG 60.276 66.667 0.00 0.00 37.67 4.79
160 161 2.866028 GCTCGTAGTCGTGGACGT 59.134 61.111 0.00 0.00 40.00 4.34
161 162 1.225963 GCTCGTAGTCGTGGACGTC 60.226 63.158 7.13 7.13 40.00 4.34
162 163 1.423056 CTCGTAGTCGTGGACGTCC 59.577 63.158 28.17 28.17 40.00 4.79
163 164 1.293963 CTCGTAGTCGTGGACGTCCA 61.294 60.000 33.23 33.23 40.00 4.02
176 177 4.722700 GTCCACGGTGCCCTGCAT 62.723 66.667 1.68 0.00 41.91 3.96
177 178 4.720902 TCCACGGTGCCCTGCATG 62.721 66.667 1.68 0.00 41.91 4.06
185 186 4.175337 GCCCTGCATGCCGGAGTA 62.175 66.667 27.88 0.94 0.00 2.59
186 187 2.109799 CCCTGCATGCCGGAGTAG 59.890 66.667 27.88 11.37 0.00 2.57
187 188 2.109799 CCTGCATGCCGGAGTAGG 59.890 66.667 22.63 13.51 0.00 3.18
188 189 2.735772 CCTGCATGCCGGAGTAGGT 61.736 63.158 22.63 0.00 33.54 3.08
189 190 1.522355 CTGCATGCCGGAGTAGGTG 60.522 63.158 16.68 0.00 0.00 4.00
190 191 2.203070 GCATGCCGGAGTAGGTGG 60.203 66.667 5.05 0.00 0.00 4.61
191 192 2.731571 GCATGCCGGAGTAGGTGGA 61.732 63.158 5.05 0.00 0.00 4.02
192 193 1.443407 CATGCCGGAGTAGGTGGAG 59.557 63.158 5.05 0.00 0.00 3.86
193 194 2.435693 ATGCCGGAGTAGGTGGAGC 61.436 63.158 5.05 0.00 0.00 4.70
194 195 3.851128 GCCGGAGTAGGTGGAGCC 61.851 72.222 5.05 0.00 37.58 4.70
195 196 3.528370 CCGGAGTAGGTGGAGCCG 61.528 72.222 0.00 0.00 43.70 5.52
196 197 2.439701 CGGAGTAGGTGGAGCCGA 60.440 66.667 0.00 0.00 44.43 5.54
197 198 2.050350 CGGAGTAGGTGGAGCCGAA 61.050 63.158 0.00 0.00 44.43 4.30
198 199 1.817209 GGAGTAGGTGGAGCCGAAG 59.183 63.158 0.00 0.00 43.70 3.79
199 200 1.142097 GAGTAGGTGGAGCCGAAGC 59.858 63.158 0.00 0.00 43.70 3.86
218 219 0.801251 CTAGAGCAGCAGCAACAACC 59.199 55.000 3.17 0.00 45.49 3.77
219 220 0.108396 TAGAGCAGCAGCAACAACCA 59.892 50.000 3.17 0.00 45.49 3.67
220 221 1.170919 AGAGCAGCAGCAACAACCAG 61.171 55.000 3.17 0.00 45.49 4.00
221 222 2.355481 GCAGCAGCAACAACCAGC 60.355 61.111 0.00 0.00 41.58 4.85
222 223 2.050714 CAGCAGCAACAACCAGCG 60.051 61.111 0.00 0.00 35.48 5.18
223 224 2.516930 AGCAGCAACAACCAGCGT 60.517 55.556 0.00 0.00 35.48 5.07
224 225 2.353839 GCAGCAACAACCAGCGTG 60.354 61.111 0.00 0.00 35.48 5.34
225 226 2.353839 CAGCAACAACCAGCGTGC 60.354 61.111 0.00 0.00 35.48 5.34
226 227 2.828095 AGCAACAACCAGCGTGCA 60.828 55.556 0.00 0.00 35.48 4.57
227 228 2.195567 AGCAACAACCAGCGTGCAT 61.196 52.632 0.00 0.00 35.48 3.96
228 229 2.017783 GCAACAACCAGCGTGCATG 61.018 57.895 0.09 0.09 0.00 4.06
229 230 1.653667 CAACAACCAGCGTGCATGA 59.346 52.632 10.93 0.00 0.00 3.07
230 231 0.241749 CAACAACCAGCGTGCATGAT 59.758 50.000 10.93 0.00 0.00 2.45
231 232 0.523072 AACAACCAGCGTGCATGATC 59.477 50.000 10.93 0.00 0.00 2.92
232 233 1.061411 CAACCAGCGTGCATGATCG 59.939 57.895 10.93 0.00 0.00 3.69
233 234 2.108514 AACCAGCGTGCATGATCGG 61.109 57.895 10.93 10.37 0.00 4.18
234 235 2.512286 CCAGCGTGCATGATCGGT 60.512 61.111 10.93 0.92 38.29 4.69
235 236 1.227234 CCAGCGTGCATGATCGGTA 60.227 57.895 10.93 0.00 36.06 4.02
236 237 1.490693 CCAGCGTGCATGATCGGTAC 61.491 60.000 10.93 0.00 36.06 3.34
237 238 1.227263 AGCGTGCATGATCGGTACC 60.227 57.895 10.93 0.16 36.06 3.34
238 239 1.520564 GCGTGCATGATCGGTACCA 60.521 57.895 13.54 0.00 0.00 3.25
239 240 0.880278 GCGTGCATGATCGGTACCAT 60.880 55.000 13.54 4.59 0.00 3.55
240 241 0.861185 CGTGCATGATCGGTACCATG 59.139 55.000 13.54 9.08 42.13 3.66
241 242 1.229428 GTGCATGATCGGTACCATGG 58.771 55.000 11.19 11.19 40.22 3.66
242 243 0.534877 TGCATGATCGGTACCATGGC 60.535 55.000 13.04 6.85 40.22 4.40
243 244 1.237285 GCATGATCGGTACCATGGCC 61.237 60.000 13.04 4.80 40.22 5.36
244 245 0.397941 CATGATCGGTACCATGGCCT 59.602 55.000 13.04 0.00 37.19 5.19
245 246 1.140312 ATGATCGGTACCATGGCCTT 58.860 50.000 13.04 0.00 0.00 4.35
246 247 1.796017 TGATCGGTACCATGGCCTTA 58.204 50.000 13.04 0.00 0.00 2.69
247 248 2.334977 TGATCGGTACCATGGCCTTAT 58.665 47.619 13.04 2.37 0.00 1.73
248 249 2.301870 TGATCGGTACCATGGCCTTATC 59.698 50.000 13.04 11.62 0.00 1.75
249 250 1.053424 TCGGTACCATGGCCTTATCC 58.947 55.000 13.04 4.63 0.00 2.59
250 251 0.762418 CGGTACCATGGCCTTATCCA 59.238 55.000 13.04 0.00 40.97 3.41
257 258 2.836154 GGCCTTATCCATGGGCGA 59.164 61.111 13.02 0.00 46.10 5.54
258 259 1.600916 GGCCTTATCCATGGGCGAC 60.601 63.158 13.02 0.00 46.10 5.19
259 260 1.451936 GCCTTATCCATGGGCGACT 59.548 57.895 13.02 0.00 36.37 4.18
260 261 0.603975 GCCTTATCCATGGGCGACTC 60.604 60.000 13.02 0.00 36.37 3.36
261 262 1.051812 CCTTATCCATGGGCGACTCT 58.948 55.000 13.02 0.00 0.00 3.24
262 263 1.270518 CCTTATCCATGGGCGACTCTG 60.271 57.143 13.02 0.00 0.00 3.35
263 264 0.758734 TTATCCATGGGCGACTCTGG 59.241 55.000 13.02 3.51 34.44 3.86
264 265 0.398522 TATCCATGGGCGACTCTGGT 60.399 55.000 13.02 1.25 34.66 4.00
265 266 0.398522 ATCCATGGGCGACTCTGGTA 60.399 55.000 13.02 0.00 34.66 3.25
266 267 0.398522 TCCATGGGCGACTCTGGTAT 60.399 55.000 13.02 0.00 34.66 2.73
267 268 0.469917 CCATGGGCGACTCTGGTATT 59.530 55.000 2.85 0.00 0.00 1.89
268 269 1.541233 CCATGGGCGACTCTGGTATTC 60.541 57.143 2.85 0.00 0.00 1.75
269 270 1.138859 CATGGGCGACTCTGGTATTCA 59.861 52.381 0.00 0.00 0.00 2.57
270 271 1.496060 TGGGCGACTCTGGTATTCAT 58.504 50.000 0.00 0.00 0.00 2.57
271 272 1.412710 TGGGCGACTCTGGTATTCATC 59.587 52.381 0.00 0.00 0.00 2.92
272 273 1.412710 GGGCGACTCTGGTATTCATCA 59.587 52.381 0.00 0.00 0.00 3.07
273 274 2.158957 GGGCGACTCTGGTATTCATCAA 60.159 50.000 0.00 0.00 0.00 2.57
274 275 2.866762 GGCGACTCTGGTATTCATCAAC 59.133 50.000 0.00 0.00 0.00 3.18
275 276 2.866762 GCGACTCTGGTATTCATCAACC 59.133 50.000 0.00 0.00 36.24 3.77
276 277 3.430929 GCGACTCTGGTATTCATCAACCT 60.431 47.826 0.00 0.00 36.67 3.50
277 278 4.363999 CGACTCTGGTATTCATCAACCTC 58.636 47.826 0.00 0.00 36.67 3.85
278 279 4.363999 GACTCTGGTATTCATCAACCTCG 58.636 47.826 0.00 0.00 36.67 4.63
279 280 3.769844 ACTCTGGTATTCATCAACCTCGT 59.230 43.478 0.00 0.00 36.67 4.18
280 281 4.142138 ACTCTGGTATTCATCAACCTCGTC 60.142 45.833 0.00 0.00 36.67 4.20
281 282 3.116300 CTGGTATTCATCAACCTCGTCG 58.884 50.000 0.00 0.00 36.67 5.12
282 283 2.756207 TGGTATTCATCAACCTCGTCGA 59.244 45.455 0.00 0.00 36.67 4.20
283 284 3.114065 GGTATTCATCAACCTCGTCGAC 58.886 50.000 5.18 5.18 32.72 4.20
284 285 3.428452 GGTATTCATCAACCTCGTCGACA 60.428 47.826 17.16 1.87 32.72 4.35
285 286 2.804697 TTCATCAACCTCGTCGACAA 57.195 45.000 17.16 0.00 0.00 3.18
286 287 3.313012 TTCATCAACCTCGTCGACAAT 57.687 42.857 17.16 0.00 0.00 2.71
287 288 2.606108 TCATCAACCTCGTCGACAATG 58.394 47.619 17.16 5.01 0.00 2.82
288 289 2.230266 TCATCAACCTCGTCGACAATGA 59.770 45.455 17.16 11.59 0.00 2.57
289 290 2.060326 TCAACCTCGTCGACAATGAC 57.940 50.000 17.16 0.00 35.49 3.06
296 297 4.853507 TCGACAATGACGACGACC 57.146 55.556 3.42 0.00 34.85 4.79
297 298 1.950758 TCGACAATGACGACGACCA 59.049 52.632 3.42 0.00 34.85 4.02
298 299 0.109919 TCGACAATGACGACGACCAG 60.110 55.000 3.42 0.00 34.85 4.00
299 300 0.386858 CGACAATGACGACGACCAGT 60.387 55.000 0.00 0.00 0.00 4.00
300 301 1.135888 CGACAATGACGACGACCAGTA 60.136 52.381 0.00 0.00 0.00 2.74
301 302 2.516923 GACAATGACGACGACCAGTAG 58.483 52.381 0.00 0.00 0.00 2.57
302 303 2.156917 ACAATGACGACGACCAGTAGA 58.843 47.619 0.00 0.00 0.00 2.59
303 304 2.161808 ACAATGACGACGACCAGTAGAG 59.838 50.000 0.00 0.00 0.00 2.43
304 305 2.110901 ATGACGACGACCAGTAGAGT 57.889 50.000 0.00 0.00 0.00 3.24
305 306 2.749280 TGACGACGACCAGTAGAGTA 57.251 50.000 0.00 0.00 0.00 2.59
306 307 2.614779 TGACGACGACCAGTAGAGTAG 58.385 52.381 0.00 0.00 0.00 2.57
307 308 2.232208 TGACGACGACCAGTAGAGTAGA 59.768 50.000 0.00 0.00 0.00 2.59
308 309 3.118847 TGACGACGACCAGTAGAGTAGAT 60.119 47.826 0.00 0.00 0.00 1.98
309 310 3.456280 ACGACGACCAGTAGAGTAGATC 58.544 50.000 0.00 0.00 0.00 2.75
310 311 2.472115 CGACGACCAGTAGAGTAGATCG 59.528 54.545 0.00 0.00 0.00 3.69
311 312 3.715495 GACGACCAGTAGAGTAGATCGA 58.285 50.000 0.00 0.00 32.63 3.59
312 313 3.719924 ACGACCAGTAGAGTAGATCGAG 58.280 50.000 0.00 0.00 32.63 4.04
313 314 3.061322 CGACCAGTAGAGTAGATCGAGG 58.939 54.545 0.00 0.00 0.00 4.63
314 315 3.404899 GACCAGTAGAGTAGATCGAGGG 58.595 54.545 0.00 0.00 0.00 4.30
315 316 2.156098 CCAGTAGAGTAGATCGAGGGC 58.844 57.143 0.00 0.00 0.00 5.19
316 317 2.487445 CCAGTAGAGTAGATCGAGGGCA 60.487 54.545 0.00 0.00 0.00 5.36
317 318 3.215151 CAGTAGAGTAGATCGAGGGCAA 58.785 50.000 0.00 0.00 0.00 4.52
318 319 3.252215 CAGTAGAGTAGATCGAGGGCAAG 59.748 52.174 0.00 0.00 0.00 4.01
319 320 1.698506 AGAGTAGATCGAGGGCAAGG 58.301 55.000 0.00 0.00 0.00 3.61
320 321 1.215673 AGAGTAGATCGAGGGCAAGGA 59.784 52.381 0.00 0.00 0.00 3.36
321 322 1.338655 GAGTAGATCGAGGGCAAGGAC 59.661 57.143 0.00 0.00 0.00 3.85
322 323 0.030908 GTAGATCGAGGGCAAGGACG 59.969 60.000 0.00 0.00 0.00 4.79
323 324 0.106868 TAGATCGAGGGCAAGGACGA 60.107 55.000 0.00 0.00 39.01 4.20
324 325 1.227002 GATCGAGGGCAAGGACGAC 60.227 63.158 0.00 0.00 37.58 4.34
325 326 2.938539 GATCGAGGGCAAGGACGACG 62.939 65.000 0.00 0.00 37.58 5.12
326 327 3.744719 CGAGGGCAAGGACGACGA 61.745 66.667 0.00 0.00 0.00 4.20
327 328 2.126031 GAGGGCAAGGACGACGAC 60.126 66.667 0.00 0.00 0.00 4.34
328 329 2.915659 AGGGCAAGGACGACGACA 60.916 61.111 0.00 0.00 0.00 4.35
329 330 2.029964 GGGCAAGGACGACGACAA 59.970 61.111 0.00 0.00 0.00 3.18
330 331 2.315386 GGGCAAGGACGACGACAAC 61.315 63.158 0.00 0.00 0.00 3.32
331 332 2.315386 GGCAAGGACGACGACAACC 61.315 63.158 0.00 0.00 0.00 3.77
332 333 2.654912 GCAAGGACGACGACAACCG 61.655 63.158 0.00 0.00 45.44 4.44
333 334 2.019951 CAAGGACGACGACAACCGG 61.020 63.158 0.00 0.00 43.93 5.28
334 335 3.853597 AAGGACGACGACAACCGGC 62.854 63.158 0.00 0.00 44.56 6.13
336 337 4.651008 GACGACGACAACCGGCCA 62.651 66.667 0.00 0.00 45.44 5.36
337 338 4.657824 ACGACGACAACCGGCCAG 62.658 66.667 0.00 0.00 45.44 4.85
338 339 4.657824 CGACGACAACCGGCCAGT 62.658 66.667 0.00 0.00 45.44 4.00
339 340 2.280592 GACGACAACCGGCCAGTT 60.281 61.111 0.00 0.00 41.44 3.16
340 341 1.890510 GACGACAACCGGCCAGTTT 60.891 57.895 0.19 0.00 41.44 2.66
341 342 1.441732 GACGACAACCGGCCAGTTTT 61.442 55.000 0.19 0.00 41.44 2.43
342 343 0.179051 ACGACAACCGGCCAGTTTTA 60.179 50.000 0.19 0.00 43.93 1.52
343 344 1.161843 CGACAACCGGCCAGTTTTAT 58.838 50.000 0.19 0.00 33.91 1.40
344 345 1.538075 CGACAACCGGCCAGTTTTATT 59.462 47.619 0.19 0.00 33.91 1.40
345 346 2.030628 CGACAACCGGCCAGTTTTATTT 60.031 45.455 0.19 0.00 33.91 1.40
346 347 3.551250 CGACAACCGGCCAGTTTTATTTT 60.551 43.478 0.19 0.00 33.91 1.82
347 348 4.373527 GACAACCGGCCAGTTTTATTTTT 58.626 39.130 0.19 0.00 0.00 1.94
390 391 9.729023 TTTAATTATGCAATGAACGGACTATTG 57.271 29.630 0.00 0.00 35.47 1.90
391 392 5.749596 TTATGCAATGAACGGACTATTGG 57.250 39.130 0.00 0.00 33.54 3.16
392 393 1.742831 TGCAATGAACGGACTATTGGC 59.257 47.619 0.00 0.00 33.54 4.52
393 394 1.268032 GCAATGAACGGACTATTGGCG 60.268 52.381 0.00 0.00 33.54 5.69
394 395 1.330521 CAATGAACGGACTATTGGCGG 59.669 52.381 0.00 0.00 0.00 6.13
395 396 0.539986 ATGAACGGACTATTGGCGGT 59.460 50.000 0.00 0.00 0.00 5.68
396 397 1.184431 TGAACGGACTATTGGCGGTA 58.816 50.000 0.00 0.00 0.00 4.02
397 398 1.549620 TGAACGGACTATTGGCGGTAA 59.450 47.619 0.00 0.00 0.00 2.85
398 399 2.168936 TGAACGGACTATTGGCGGTAAT 59.831 45.455 0.00 0.00 0.00 1.89
399 400 2.234300 ACGGACTATTGGCGGTAATG 57.766 50.000 0.00 0.00 0.00 1.90
400 401 1.483415 ACGGACTATTGGCGGTAATGT 59.517 47.619 0.00 0.00 0.00 2.71
401 402 2.694628 ACGGACTATTGGCGGTAATGTA 59.305 45.455 0.00 0.00 0.00 2.29
402 403 3.322828 ACGGACTATTGGCGGTAATGTAT 59.677 43.478 0.00 0.00 0.00 2.29
403 404 4.523943 ACGGACTATTGGCGGTAATGTATA 59.476 41.667 0.00 0.00 0.00 1.47
404 405 5.186409 ACGGACTATTGGCGGTAATGTATAT 59.814 40.000 0.00 0.00 0.00 0.86
405 406 5.518847 CGGACTATTGGCGGTAATGTATATG 59.481 44.000 0.00 0.00 0.00 1.78
406 407 6.403878 GGACTATTGGCGGTAATGTATATGT 58.596 40.000 0.00 0.00 0.00 2.29
407 408 6.877322 GGACTATTGGCGGTAATGTATATGTT 59.123 38.462 0.00 0.00 0.00 2.71
408 409 7.389607 GGACTATTGGCGGTAATGTATATGTTT 59.610 37.037 0.00 0.00 0.00 2.83
409 410 9.426837 GACTATTGGCGGTAATGTATATGTTTA 57.573 33.333 0.00 0.00 0.00 2.01
410 411 9.953565 ACTATTGGCGGTAATGTATATGTTTAT 57.046 29.630 0.00 0.00 0.00 1.40
445 446 7.644986 TTGGTTAAAATCTAAAATGCGTTGG 57.355 32.000 0.00 0.00 0.00 3.77
446 447 6.750148 TGGTTAAAATCTAAAATGCGTTGGT 58.250 32.000 0.00 0.00 0.00 3.67
447 448 6.864165 TGGTTAAAATCTAAAATGCGTTGGTC 59.136 34.615 0.00 0.00 0.00 4.02
448 449 6.033091 GGTTAAAATCTAAAATGCGTTGGTCG 59.967 38.462 0.00 0.00 43.12 4.79
482 483 0.320073 CGGACACGGCCAGACTTTAA 60.320 55.000 2.24 0.00 36.18 1.52
484 485 2.433436 GGACACGGCCAGACTTTAATT 58.567 47.619 2.24 0.00 0.00 1.40
486 487 3.365969 GGACACGGCCAGACTTTAATTTG 60.366 47.826 2.24 0.00 0.00 2.32
489 490 3.004315 CACGGCCAGACTTTAATTTGTGT 59.996 43.478 2.24 0.00 0.00 3.72
490 491 3.252458 ACGGCCAGACTTTAATTTGTGTC 59.748 43.478 2.24 0.00 0.00 3.67
498 499 4.079253 ACTTTAATTTGTGTCTGGCCGAT 58.921 39.130 0.00 0.00 0.00 4.18
504 505 0.327924 TGTGTCTGGCCGATCCAAAT 59.672 50.000 0.00 0.00 46.01 2.32
506 507 0.394216 TGTCTGGCCGATCCAAATGG 60.394 55.000 0.00 0.00 46.01 3.16
507 508 1.103398 GTCTGGCCGATCCAAATGGG 61.103 60.000 0.00 0.00 46.01 4.00
545 547 2.217429 ATGTGTTCGTTTTGGTTGGC 57.783 45.000 0.00 0.00 0.00 4.52
588 595 5.445010 GCGATTGTTAAACAACTACGGTAGG 60.445 44.000 18.73 5.16 41.40 3.18
591 598 5.528043 TGTTAAACAACTACGGTAGGTCA 57.472 39.130 18.73 3.31 0.00 4.02
599 606 4.787999 CGGTAGGTCAGCGTTCTC 57.212 61.111 0.00 0.00 43.13 2.87
606 614 2.851195 AGGTCAGCGTTCTCACATTTT 58.149 42.857 0.00 0.00 0.00 1.82
608 616 2.548057 GGTCAGCGTTCTCACATTTTCA 59.452 45.455 0.00 0.00 0.00 2.69
642 651 8.938906 CAGCCTTAGATATTTTGCAACAAAAAT 58.061 29.630 9.32 0.00 41.45 1.82
657 666 6.308041 GCAACAAAAATCCCTTAGATTCGTTC 59.692 38.462 0.00 0.00 44.75 3.95
658 667 6.178239 ACAAAAATCCCTTAGATTCGTTCG 57.822 37.500 0.00 0.00 44.75 3.95
666 675 5.047847 CCCTTAGATTCGTTCGCATTCTTA 58.952 41.667 0.00 0.00 0.00 2.10
715 725 4.217767 GTGGGAGGTCATTTCCTTTGTAAC 59.782 45.833 0.00 0.00 38.02 2.50
720 730 5.701224 AGGTCATTTCCTTTGTAACTTGGA 58.299 37.500 0.00 0.00 33.52 3.53
787 2177 4.869861 GGCAATTTGTAAATGGGTGATCAC 59.130 41.667 17.91 17.91 0.00 3.06
857 2247 1.451504 CCCCACAGAGCAGTGACAA 59.548 57.895 0.00 0.00 42.05 3.18
896 2286 1.892474 ACAGAGCAGTGAGAGAGAACC 59.108 52.381 0.00 0.00 0.00 3.62
1655 3463 2.654912 GACGTCTTCACCCGCAACG 61.655 63.158 8.70 0.00 39.16 4.10
1657 3465 2.935955 GTCTTCACCCGCAACGTG 59.064 61.111 0.00 0.00 0.00 4.49
1744 3552 1.884235 CCAGGAACGACTTCAGCTTT 58.116 50.000 0.00 0.00 0.00 3.51
2047 3855 3.474570 GGTCTGCCGAGGCCTGAT 61.475 66.667 12.00 0.00 41.31 2.90
2062 3870 2.977914 CCTGATCAGGTGACGTTTGAT 58.022 47.619 30.55 0.00 43.61 2.57
2077 3885 0.036105 TTGATGTGATGCTCAGCGGT 60.036 50.000 0.00 0.00 0.00 5.68
2305 4113 2.109128 TGGATTGTGTAAGGAGGGCAAA 59.891 45.455 0.00 0.00 0.00 3.68
2326 4134 6.348540 GCAAATCGTTTGATGTAAGGAGAGTT 60.349 38.462 12.62 0.00 43.26 3.01
2797 4605 4.696455 CATTGTGCAAAGAAGGAAGGTTT 58.304 39.130 0.00 0.00 0.00 3.27
2800 4608 3.766591 TGTGCAAAGAAGGAAGGTTTGAA 59.233 39.130 0.00 0.00 33.78 2.69
2914 4722 1.674962 GGCAAGACATCTTCAGCCATC 59.325 52.381 14.91 0.00 41.81 3.51
3145 4953 7.622672 GCAATGCCTTTGTTAGATGAAATGTTG 60.623 37.037 0.00 0.00 37.65 3.33
3284 5092 2.941720 CAGAAGGAAGTGCTCTATTGCC 59.058 50.000 0.00 0.00 0.00 4.52
3507 5315 4.820173 CACATTCATGCCTGTCATAGATGT 59.180 41.667 0.00 0.00 38.93 3.06
3593 5401 5.125356 CAGATGGTAATGTTGGTCATGCTA 58.875 41.667 0.00 0.00 36.81 3.49
3613 5421 3.926058 ACTGTTTCTGGTGTGGTTACT 57.074 42.857 0.00 0.00 0.00 2.24
3639 5447 2.842256 GCCGGAAGCATGAGCATGG 61.842 63.158 5.05 0.00 45.49 3.66
3701 5509 8.041323 ACAGGTATTATCACGATCAAGTTTCTT 58.959 33.333 0.00 0.00 0.00 2.52
3771 5580 5.425577 TCTGTAGCGCTTAGACTATGAAG 57.574 43.478 18.68 0.66 0.00 3.02
3948 5773 0.971386 TGCAGAGATGACAGTGCTCA 59.029 50.000 0.00 0.00 36.84 4.26
3949 5774 1.553704 TGCAGAGATGACAGTGCTCAT 59.446 47.619 7.62 7.62 36.84 2.90
3953 5778 2.360483 AGAGATGACAGTGCTCATACGG 59.640 50.000 7.81 0.00 30.62 4.02
4140 5965 4.335594 AGAAGTTGCTTGTGACTACAAACC 59.664 41.667 0.00 0.00 45.53 3.27
4144 5969 1.263217 GCTTGTGACTACAAACCCACG 59.737 52.381 0.00 0.00 45.53 4.94
4315 6158 1.904865 ACACACCTTGCCTGCCATG 60.905 57.895 0.00 0.00 0.00 3.66
4393 6238 2.281070 CCGTGGTGCTCAGCTGTT 60.281 61.111 14.67 0.00 0.00 3.16
4483 6331 0.460635 TTGTATTACCCCTCGTGCGC 60.461 55.000 0.00 0.00 0.00 6.09
4485 6333 3.778360 TATTACCCCTCGTGCGCGC 62.778 63.158 27.26 27.26 38.14 6.86
4985 6886 0.252927 CCCTCCCTCACTCCTTTCCT 60.253 60.000 0.00 0.00 0.00 3.36
5005 6906 0.466543 AACAGTGACCTGCAACCGTA 59.533 50.000 0.00 0.00 42.81 4.02
5032 6933 2.675772 GACGTCCTCCACTCCCGT 60.676 66.667 3.51 0.00 0.00 5.28
5046 6948 3.322466 CCGTCCCCCTCAGCAAGT 61.322 66.667 0.00 0.00 0.00 3.16
5053 6955 0.109342 CCCCTCAGCAAGTGTGTCTT 59.891 55.000 0.00 0.00 36.75 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.038526 TCTTGAAGGCCTCGTCGTTC 60.039 55.000 5.23 0.00 0.00 3.95
1 2 0.391597 TTCTTGAAGGCCTCGTCGTT 59.608 50.000 5.23 0.00 0.00 3.85
2 3 0.038159 CTTCTTGAAGGCCTCGTCGT 60.038 55.000 5.23 0.00 0.00 4.34
3 4 0.737715 CCTTCTTGAAGGCCTCGTCG 60.738 60.000 5.23 0.00 32.43 5.12
4 5 0.321996 ACCTTCTTGAAGGCCTCGTC 59.678 55.000 24.58 0.21 43.80 4.20
5 6 0.321996 GACCTTCTTGAAGGCCTCGT 59.678 55.000 24.58 8.83 43.80 4.18
6 7 0.391793 GGACCTTCTTGAAGGCCTCG 60.392 60.000 24.58 5.85 43.80 4.63
7 8 0.988063 AGGACCTTCTTGAAGGCCTC 59.012 55.000 25.56 18.54 43.80 4.70
8 9 0.988063 GAGGACCTTCTTGAAGGCCT 59.012 55.000 28.57 28.57 43.98 5.19
9 10 0.391793 CGAGGACCTTCTTGAAGGCC 60.392 60.000 24.58 23.78 43.80 5.19
10 11 0.608640 TCGAGGACCTTCTTGAAGGC 59.391 55.000 24.58 17.84 43.80 4.35
11 12 1.205893 CCTCGAGGACCTTCTTGAAGG 59.794 57.143 28.21 23.44 45.46 3.46
12 13 2.171840 TCCTCGAGGACCTTCTTGAAG 58.828 52.381 30.49 0.00 39.78 3.02
13 14 2.304221 TCCTCGAGGACCTTCTTGAA 57.696 50.000 30.49 3.84 39.78 2.69
23 24 2.212794 GAGGTGGGAGTCCTCGAGGA 62.213 65.000 30.49 30.49 41.36 3.71
24 25 1.755008 GAGGTGGGAGTCCTCGAGG 60.755 68.421 26.32 26.32 41.36 4.63
25 26 3.927501 GAGGTGGGAGTCCTCGAG 58.072 66.667 9.58 5.13 41.36 4.04
28 29 2.408241 CGTCGAGGTGGGAGTCCTC 61.408 68.421 9.58 2.76 45.56 3.71
29 30 2.361357 CGTCGAGGTGGGAGTCCT 60.361 66.667 9.58 0.00 38.09 3.85
30 31 2.360852 TCGTCGAGGTGGGAGTCC 60.361 66.667 0.00 0.00 0.00 3.85
31 32 3.053849 GCTCGTCGAGGTGGGAGTC 62.054 68.421 23.09 0.60 0.00 3.36
32 33 3.063084 GCTCGTCGAGGTGGGAGT 61.063 66.667 23.09 0.00 0.00 3.85
33 34 2.752238 AGCTCGTCGAGGTGGGAG 60.752 66.667 25.10 0.00 39.04 4.30
34 35 2.750637 GAGCTCGTCGAGGTGGGA 60.751 66.667 30.03 0.00 40.67 4.37
43 44 4.803426 CCACTGGGCGAGCTCGTC 62.803 72.222 34.46 33.25 44.28 4.20
45 46 4.803426 GACCACTGGGCGAGCTCG 62.803 72.222 31.37 31.37 43.27 5.03
46 47 3.386237 AGACCACTGGGCGAGCTC 61.386 66.667 2.73 2.73 34.63 4.09
47 48 3.699894 CAGACCACTGGGCGAGCT 61.700 66.667 0.00 0.00 40.14 4.09
55 56 1.302033 GTGACAGGCCAGACCACTG 60.302 63.158 5.01 0.00 43.14 3.66
56 57 1.460305 AGTGACAGGCCAGACCACT 60.460 57.895 17.23 17.23 43.14 4.00
57 58 1.302033 CAGTGACAGGCCAGACCAC 60.302 63.158 5.01 11.18 43.14 4.16
58 59 2.519622 CCAGTGACAGGCCAGACCA 61.520 63.158 5.01 0.00 43.14 4.02
59 60 2.348998 CCAGTGACAGGCCAGACC 59.651 66.667 5.01 0.00 39.61 3.85
60 61 2.359230 GCCAGTGACAGGCCAGAC 60.359 66.667 7.91 0.00 46.50 3.51
92 93 1.138247 GGCTCAAGCATGGCGAAAG 59.862 57.895 4.13 0.00 44.36 2.62
93 94 1.303561 AGGCTCAAGCATGGCGAAA 60.304 52.632 4.13 0.00 44.36 3.46
94 95 2.352422 AGGCTCAAGCATGGCGAA 59.648 55.556 4.13 0.00 44.36 4.70
100 101 0.390866 CACGACTCAGGCTCAAGCAT 60.391 55.000 4.13 0.00 44.36 3.79
101 102 1.005748 CACGACTCAGGCTCAAGCA 60.006 57.895 4.13 0.00 44.36 3.91
102 103 1.739562 CCACGACTCAGGCTCAAGC 60.740 63.158 0.00 0.00 41.14 4.01
103 104 4.586618 CCACGACTCAGGCTCAAG 57.413 61.111 0.00 0.00 0.00 3.02
109 110 1.669115 CAAGTGGCCACGACTCAGG 60.669 63.158 29.68 11.48 36.20 3.86
110 111 2.320587 GCAAGTGGCCACGACTCAG 61.321 63.158 29.68 17.05 36.11 3.35
111 112 2.280797 GCAAGTGGCCACGACTCA 60.281 61.111 29.68 0.00 36.11 3.41
112 113 3.414700 CGCAAGTGGCCACGACTC 61.415 66.667 29.68 18.22 40.31 3.36
125 126 4.752879 GCCCCACTAGCGACGCAA 62.753 66.667 23.70 0.00 0.00 4.85
132 133 3.486252 CTACGAGCGCCCCACTAGC 62.486 68.421 2.29 0.00 0.00 3.42
133 134 2.061182 GACTACGAGCGCCCCACTAG 62.061 65.000 2.29 0.00 0.00 2.57
134 135 2.044650 ACTACGAGCGCCCCACTA 60.045 61.111 2.29 0.00 0.00 2.74
135 136 3.450115 GACTACGAGCGCCCCACT 61.450 66.667 2.29 0.00 0.00 4.00
136 137 4.849329 CGACTACGAGCGCCCCAC 62.849 72.222 2.29 0.00 42.66 4.61
138 139 4.849329 CACGACTACGAGCGCCCC 62.849 72.222 2.29 0.00 42.66 5.80
139 140 4.849329 CCACGACTACGAGCGCCC 62.849 72.222 2.29 0.00 42.66 6.13
140 141 3.807538 TCCACGACTACGAGCGCC 61.808 66.667 2.29 0.00 42.66 6.53
141 142 2.576317 GTCCACGACTACGAGCGC 60.576 66.667 0.00 0.00 42.66 5.92
142 143 2.276493 CGTCCACGACTACGAGCG 60.276 66.667 0.00 0.00 41.55 5.03
143 144 1.225963 GACGTCCACGACTACGAGC 60.226 63.158 3.51 3.72 41.55 5.03
144 145 1.293963 TGGACGTCCACGACTACGAG 61.294 60.000 33.23 0.00 42.01 4.18
145 146 1.301637 TGGACGTCCACGACTACGA 60.302 57.895 33.23 7.33 42.01 3.43
146 147 3.256936 TGGACGTCCACGACTACG 58.743 61.111 33.23 0.00 42.01 3.51
168 169 4.175337 TACTCCGGCATGCAGGGC 62.175 66.667 32.49 15.76 32.10 5.19
169 170 2.109799 CTACTCCGGCATGCAGGG 59.890 66.667 32.49 25.29 32.10 4.45
170 171 2.109799 CCTACTCCGGCATGCAGG 59.890 66.667 28.75 28.75 0.00 4.85
171 172 1.522355 CACCTACTCCGGCATGCAG 60.522 63.158 21.36 16.26 0.00 4.41
172 173 2.584064 CACCTACTCCGGCATGCA 59.416 61.111 21.36 0.00 0.00 3.96
173 174 2.203070 CCACCTACTCCGGCATGC 60.203 66.667 9.90 9.90 0.00 4.06
174 175 1.443407 CTCCACCTACTCCGGCATG 59.557 63.158 0.00 0.00 0.00 4.06
175 176 2.435693 GCTCCACCTACTCCGGCAT 61.436 63.158 0.00 0.00 0.00 4.40
176 177 3.075005 GCTCCACCTACTCCGGCA 61.075 66.667 0.00 0.00 0.00 5.69
177 178 3.851128 GGCTCCACCTACTCCGGC 61.851 72.222 0.00 0.00 34.51 6.13
178 179 3.528370 CGGCTCCACCTACTCCGG 61.528 72.222 0.00 0.00 36.73 5.14
179 180 2.005960 CTTCGGCTCCACCTACTCCG 62.006 65.000 0.00 0.00 41.30 4.63
180 181 1.817209 CTTCGGCTCCACCTACTCC 59.183 63.158 0.00 0.00 35.61 3.85
181 182 1.142097 GCTTCGGCTCCACCTACTC 59.858 63.158 0.00 0.00 38.08 2.59
182 183 3.300013 GCTTCGGCTCCACCTACT 58.700 61.111 0.00 0.00 38.08 2.57
199 200 0.801251 GGTTGTTGCTGCTGCTCTAG 59.199 55.000 17.00 0.00 40.48 2.43
200 201 0.108396 TGGTTGTTGCTGCTGCTCTA 59.892 50.000 17.00 4.57 40.48 2.43
201 202 1.152902 TGGTTGTTGCTGCTGCTCT 60.153 52.632 17.00 0.00 40.48 4.09
202 203 1.285023 CTGGTTGTTGCTGCTGCTC 59.715 57.895 17.00 10.19 40.48 4.26
203 204 2.853290 GCTGGTTGTTGCTGCTGCT 61.853 57.895 17.00 0.00 40.48 4.24
204 205 2.355481 GCTGGTTGTTGCTGCTGC 60.355 61.111 8.89 8.89 40.20 5.25
205 206 2.050714 CGCTGGTTGTTGCTGCTG 60.051 61.111 0.00 0.00 0.00 4.41
206 207 2.516930 ACGCTGGTTGTTGCTGCT 60.517 55.556 0.00 0.00 0.00 4.24
207 208 2.353839 CACGCTGGTTGTTGCTGC 60.354 61.111 0.00 0.00 0.00 5.25
208 209 2.353839 GCACGCTGGTTGTTGCTG 60.354 61.111 0.00 0.00 0.00 4.41
209 210 2.195567 ATGCACGCTGGTTGTTGCT 61.196 52.632 0.00 0.00 0.00 3.91
210 211 2.017783 CATGCACGCTGGTTGTTGC 61.018 57.895 0.00 0.00 0.00 4.17
211 212 0.241749 ATCATGCACGCTGGTTGTTG 59.758 50.000 0.00 0.00 0.00 3.33
212 213 0.523072 GATCATGCACGCTGGTTGTT 59.477 50.000 0.00 0.00 0.00 2.83
213 214 1.638388 CGATCATGCACGCTGGTTGT 61.638 55.000 0.00 0.00 0.00 3.32
214 215 1.061411 CGATCATGCACGCTGGTTG 59.939 57.895 0.00 0.00 0.00 3.77
215 216 2.108514 CCGATCATGCACGCTGGTT 61.109 57.895 0.00 0.00 0.00 3.67
216 217 1.955495 TACCGATCATGCACGCTGGT 61.955 55.000 0.00 0.00 0.00 4.00
217 218 1.227234 TACCGATCATGCACGCTGG 60.227 57.895 0.00 0.00 0.00 4.85
218 219 1.490693 GGTACCGATCATGCACGCTG 61.491 60.000 0.00 0.00 0.00 5.18
219 220 1.227263 GGTACCGATCATGCACGCT 60.227 57.895 0.00 0.00 0.00 5.07
220 221 0.880278 ATGGTACCGATCATGCACGC 60.880 55.000 7.57 0.00 0.00 5.34
221 222 0.861185 CATGGTACCGATCATGCACG 59.139 55.000 7.57 4.78 37.37 5.34
222 223 1.229428 CCATGGTACCGATCATGCAC 58.771 55.000 7.57 0.00 42.10 4.57
223 224 0.534877 GCCATGGTACCGATCATGCA 60.535 55.000 14.67 0.00 42.10 3.96
224 225 1.237285 GGCCATGGTACCGATCATGC 61.237 60.000 14.67 3.89 42.10 4.06
225 226 0.397941 AGGCCATGGTACCGATCATG 59.602 55.000 14.67 5.19 42.94 3.07
226 227 1.140312 AAGGCCATGGTACCGATCAT 58.860 50.000 14.67 0.00 0.00 2.45
227 228 1.796017 TAAGGCCATGGTACCGATCA 58.204 50.000 14.67 0.00 0.00 2.92
228 229 2.354805 GGATAAGGCCATGGTACCGATC 60.355 54.545 14.67 13.87 0.00 3.69
229 230 1.628846 GGATAAGGCCATGGTACCGAT 59.371 52.381 14.67 6.12 0.00 4.18
230 231 1.053424 GGATAAGGCCATGGTACCGA 58.947 55.000 14.67 1.18 0.00 4.69
231 232 0.762418 TGGATAAGGCCATGGTACCG 59.238 55.000 14.67 0.00 31.66 4.02
239 240 2.075566 TCGCCCATGGATAAGGCCA 61.076 57.895 15.22 0.00 44.13 5.36
240 241 1.600916 GTCGCCCATGGATAAGGCC 60.601 63.158 15.22 0.00 44.13 5.19
241 242 0.603975 GAGTCGCCCATGGATAAGGC 60.604 60.000 15.22 6.58 43.53 4.35
242 243 1.051812 AGAGTCGCCCATGGATAAGG 58.948 55.000 15.22 0.00 0.00 2.69
243 244 1.270518 CCAGAGTCGCCCATGGATAAG 60.271 57.143 15.22 0.00 34.60 1.73
244 245 0.758734 CCAGAGTCGCCCATGGATAA 59.241 55.000 15.22 0.00 34.60 1.75
245 246 0.398522 ACCAGAGTCGCCCATGGATA 60.399 55.000 15.22 0.00 36.62 2.59
246 247 0.398522 TACCAGAGTCGCCCATGGAT 60.399 55.000 15.22 0.00 36.62 3.41
247 248 0.398522 ATACCAGAGTCGCCCATGGA 60.399 55.000 15.22 0.00 36.62 3.41
248 249 0.469917 AATACCAGAGTCGCCCATGG 59.530 55.000 4.14 4.14 38.83 3.66
249 250 1.138859 TGAATACCAGAGTCGCCCATG 59.861 52.381 0.00 0.00 0.00 3.66
250 251 1.496060 TGAATACCAGAGTCGCCCAT 58.504 50.000 0.00 0.00 0.00 4.00
251 252 1.412710 GATGAATACCAGAGTCGCCCA 59.587 52.381 0.00 0.00 0.00 5.36
252 253 1.412710 TGATGAATACCAGAGTCGCCC 59.587 52.381 0.00 0.00 0.00 6.13
253 254 2.866762 GTTGATGAATACCAGAGTCGCC 59.133 50.000 0.00 0.00 0.00 5.54
254 255 2.866762 GGTTGATGAATACCAGAGTCGC 59.133 50.000 0.00 0.00 34.48 5.19
255 256 4.363999 GAGGTTGATGAATACCAGAGTCG 58.636 47.826 0.00 0.00 36.87 4.18
256 257 4.142138 ACGAGGTTGATGAATACCAGAGTC 60.142 45.833 0.00 0.00 36.87 3.36
257 258 3.769844 ACGAGGTTGATGAATACCAGAGT 59.230 43.478 0.00 0.00 36.87 3.24
258 259 4.363999 GACGAGGTTGATGAATACCAGAG 58.636 47.826 0.00 0.00 36.87 3.35
259 260 3.181490 CGACGAGGTTGATGAATACCAGA 60.181 47.826 0.00 0.00 36.87 3.86
260 261 3.116300 CGACGAGGTTGATGAATACCAG 58.884 50.000 0.00 0.00 36.87 4.00
261 262 2.756207 TCGACGAGGTTGATGAATACCA 59.244 45.455 0.00 0.00 36.87 3.25
262 263 3.114065 GTCGACGAGGTTGATGAATACC 58.886 50.000 0.00 0.00 34.54 2.73
263 264 3.766151 TGTCGACGAGGTTGATGAATAC 58.234 45.455 11.62 0.00 0.00 1.89
264 265 4.443913 TTGTCGACGAGGTTGATGAATA 57.556 40.909 11.62 0.00 0.00 1.75
265 266 3.313012 TTGTCGACGAGGTTGATGAAT 57.687 42.857 11.62 0.00 0.00 2.57
266 267 2.804697 TTGTCGACGAGGTTGATGAA 57.195 45.000 11.62 0.00 0.00 2.57
267 268 2.230266 TCATTGTCGACGAGGTTGATGA 59.770 45.455 16.53 8.65 0.00 2.92
268 269 2.345641 GTCATTGTCGACGAGGTTGATG 59.654 50.000 16.53 6.43 0.00 3.07
269 270 2.607187 GTCATTGTCGACGAGGTTGAT 58.393 47.619 16.53 0.00 0.00 2.57
270 271 2.060326 GTCATTGTCGACGAGGTTGA 57.940 50.000 16.53 10.03 0.00 3.18
279 280 0.109919 CTGGTCGTCGTCATTGTCGA 60.110 55.000 1.85 1.85 34.91 4.20
280 281 0.386858 ACTGGTCGTCGTCATTGTCG 60.387 55.000 0.00 0.00 0.00 4.35
281 282 2.161012 TCTACTGGTCGTCGTCATTGTC 59.839 50.000 0.00 0.00 0.00 3.18
282 283 2.156917 TCTACTGGTCGTCGTCATTGT 58.843 47.619 0.00 0.00 0.00 2.71
283 284 2.161808 ACTCTACTGGTCGTCGTCATTG 59.838 50.000 0.00 0.00 0.00 2.82
284 285 2.434428 ACTCTACTGGTCGTCGTCATT 58.566 47.619 0.00 0.00 0.00 2.57
285 286 2.110901 ACTCTACTGGTCGTCGTCAT 57.889 50.000 0.00 0.00 0.00 3.06
286 287 2.232208 TCTACTCTACTGGTCGTCGTCA 59.768 50.000 0.00 0.00 0.00 4.35
287 288 2.886081 TCTACTCTACTGGTCGTCGTC 58.114 52.381 0.00 0.00 0.00 4.20
288 289 3.456280 GATCTACTCTACTGGTCGTCGT 58.544 50.000 0.00 0.00 0.00 4.34
289 290 2.472115 CGATCTACTCTACTGGTCGTCG 59.528 54.545 0.00 0.00 0.00 5.12
290 291 3.715495 TCGATCTACTCTACTGGTCGTC 58.285 50.000 0.00 0.00 0.00 4.20
291 292 3.493002 CCTCGATCTACTCTACTGGTCGT 60.493 52.174 0.00 0.00 0.00 4.34
292 293 3.061322 CCTCGATCTACTCTACTGGTCG 58.939 54.545 0.00 0.00 0.00 4.79
293 294 3.404899 CCCTCGATCTACTCTACTGGTC 58.595 54.545 0.00 0.00 0.00 4.02
294 295 2.487625 GCCCTCGATCTACTCTACTGGT 60.488 54.545 0.00 0.00 0.00 4.00
295 296 2.156098 GCCCTCGATCTACTCTACTGG 58.844 57.143 0.00 0.00 0.00 4.00
296 297 2.852449 TGCCCTCGATCTACTCTACTG 58.148 52.381 0.00 0.00 0.00 2.74
297 298 3.482436 CTTGCCCTCGATCTACTCTACT 58.518 50.000 0.00 0.00 0.00 2.57
298 299 2.554893 CCTTGCCCTCGATCTACTCTAC 59.445 54.545 0.00 0.00 0.00 2.59
299 300 2.442126 TCCTTGCCCTCGATCTACTCTA 59.558 50.000 0.00 0.00 0.00 2.43
300 301 1.215673 TCCTTGCCCTCGATCTACTCT 59.784 52.381 0.00 0.00 0.00 3.24
301 302 1.338655 GTCCTTGCCCTCGATCTACTC 59.661 57.143 0.00 0.00 0.00 2.59
302 303 1.404843 GTCCTTGCCCTCGATCTACT 58.595 55.000 0.00 0.00 0.00 2.57
303 304 0.030908 CGTCCTTGCCCTCGATCTAC 59.969 60.000 0.00 0.00 0.00 2.59
304 305 0.106868 TCGTCCTTGCCCTCGATCTA 60.107 55.000 0.00 0.00 0.00 1.98
305 306 1.379977 TCGTCCTTGCCCTCGATCT 60.380 57.895 0.00 0.00 0.00 2.75
306 307 1.227002 GTCGTCCTTGCCCTCGATC 60.227 63.158 0.00 0.00 34.93 3.69
307 308 2.893398 GTCGTCCTTGCCCTCGAT 59.107 61.111 0.00 0.00 34.93 3.59
308 309 3.744719 CGTCGTCCTTGCCCTCGA 61.745 66.667 0.00 0.00 0.00 4.04
309 310 3.744719 TCGTCGTCCTTGCCCTCG 61.745 66.667 0.00 0.00 0.00 4.63
310 311 2.126031 GTCGTCGTCCTTGCCCTC 60.126 66.667 0.00 0.00 0.00 4.30
311 312 2.504274 TTGTCGTCGTCCTTGCCCT 61.504 57.895 0.00 0.00 0.00 5.19
312 313 2.029964 TTGTCGTCGTCCTTGCCC 59.970 61.111 0.00 0.00 0.00 5.36
313 314 2.315386 GGTTGTCGTCGTCCTTGCC 61.315 63.158 0.00 0.00 0.00 4.52
314 315 2.654912 CGGTTGTCGTCGTCCTTGC 61.655 63.158 0.00 0.00 0.00 4.01
315 316 2.019951 CCGGTTGTCGTCGTCCTTG 61.020 63.158 0.00 0.00 37.11 3.61
316 317 2.337532 CCGGTTGTCGTCGTCCTT 59.662 61.111 0.00 0.00 37.11 3.36
317 318 4.353437 GCCGGTTGTCGTCGTCCT 62.353 66.667 1.90 0.00 37.11 3.85
319 320 4.651008 TGGCCGGTTGTCGTCGTC 62.651 66.667 1.90 0.00 37.11 4.20
320 321 4.657824 CTGGCCGGTTGTCGTCGT 62.658 66.667 2.29 0.00 37.11 4.34
321 322 4.657824 ACTGGCCGGTTGTCGTCG 62.658 66.667 12.85 0.00 37.11 5.12
322 323 1.441732 AAAACTGGCCGGTTGTCGTC 61.442 55.000 30.47 0.00 37.11 4.20
323 324 0.179051 TAAAACTGGCCGGTTGTCGT 60.179 50.000 30.47 17.57 37.11 4.34
324 325 1.161843 ATAAAACTGGCCGGTTGTCG 58.838 50.000 30.47 0.00 38.88 4.35
325 326 3.653539 AAATAAAACTGGCCGGTTGTC 57.346 42.857 30.47 0.00 0.00 3.18
326 327 4.409718 AAAAATAAAACTGGCCGGTTGT 57.590 36.364 30.47 26.99 0.00 3.32
364 365 9.729023 CAATAGTCCGTTCATTGCATAATTAAA 57.271 29.630 0.00 0.00 0.00 1.52
365 366 8.349245 CCAATAGTCCGTTCATTGCATAATTAA 58.651 33.333 0.00 0.00 0.00 1.40
366 367 7.521423 GCCAATAGTCCGTTCATTGCATAATTA 60.521 37.037 0.00 0.00 0.00 1.40
367 368 6.735694 GCCAATAGTCCGTTCATTGCATAATT 60.736 38.462 0.00 0.00 0.00 1.40
368 369 5.278463 GCCAATAGTCCGTTCATTGCATAAT 60.278 40.000 0.00 0.00 0.00 1.28
369 370 4.036262 GCCAATAGTCCGTTCATTGCATAA 59.964 41.667 0.00 0.00 0.00 1.90
370 371 3.563808 GCCAATAGTCCGTTCATTGCATA 59.436 43.478 0.00 0.00 0.00 3.14
371 372 2.358898 GCCAATAGTCCGTTCATTGCAT 59.641 45.455 0.00 0.00 0.00 3.96
372 373 1.742831 GCCAATAGTCCGTTCATTGCA 59.257 47.619 0.00 0.00 0.00 4.08
373 374 1.268032 CGCCAATAGTCCGTTCATTGC 60.268 52.381 0.00 0.00 0.00 3.56
374 375 1.330521 CCGCCAATAGTCCGTTCATTG 59.669 52.381 0.00 0.00 0.00 2.82
375 376 1.065709 ACCGCCAATAGTCCGTTCATT 60.066 47.619 0.00 0.00 0.00 2.57
376 377 0.539986 ACCGCCAATAGTCCGTTCAT 59.460 50.000 0.00 0.00 0.00 2.57
377 378 1.184431 TACCGCCAATAGTCCGTTCA 58.816 50.000 0.00 0.00 0.00 3.18
378 379 2.298411 TTACCGCCAATAGTCCGTTC 57.702 50.000 0.00 0.00 0.00 3.95
379 380 2.093341 ACATTACCGCCAATAGTCCGTT 60.093 45.455 0.00 0.00 0.00 4.44
380 381 1.483415 ACATTACCGCCAATAGTCCGT 59.517 47.619 0.00 0.00 0.00 4.69
381 382 2.234300 ACATTACCGCCAATAGTCCG 57.766 50.000 0.00 0.00 0.00 4.79
382 383 6.403878 ACATATACATTACCGCCAATAGTCC 58.596 40.000 0.00 0.00 0.00 3.85
383 384 7.900782 AACATATACATTACCGCCAATAGTC 57.099 36.000 0.00 0.00 0.00 2.59
384 385 9.953565 ATAAACATATACATTACCGCCAATAGT 57.046 29.630 0.00 0.00 0.00 2.12
419 420 8.716909 CCAACGCATTTTAGATTTTAACCAAAT 58.283 29.630 0.00 0.00 37.84 2.32
420 421 7.711339 ACCAACGCATTTTAGATTTTAACCAAA 59.289 29.630 0.00 0.00 0.00 3.28
421 422 7.210873 ACCAACGCATTTTAGATTTTAACCAA 58.789 30.769 0.00 0.00 0.00 3.67
422 423 6.750148 ACCAACGCATTTTAGATTTTAACCA 58.250 32.000 0.00 0.00 0.00 3.67
423 424 6.033091 CGACCAACGCATTTTAGATTTTAACC 59.967 38.462 0.00 0.00 34.51 2.85
424 425 6.963164 CGACCAACGCATTTTAGATTTTAAC 58.037 36.000 0.00 0.00 34.51 2.01
440 441 1.343506 GTTAGTAGGTGCGACCAACG 58.656 55.000 7.86 0.00 41.95 4.10
441 442 1.718396 GGTTAGTAGGTGCGACCAAC 58.282 55.000 7.86 3.82 41.95 3.77
442 443 0.244450 CGGTTAGTAGGTGCGACCAA 59.756 55.000 7.86 0.00 41.95 3.67
443 444 0.608856 TCGGTTAGTAGGTGCGACCA 60.609 55.000 7.86 0.00 41.95 4.02
444 445 0.179153 GTCGGTTAGTAGGTGCGACC 60.179 60.000 0.00 0.00 38.99 4.79
445 446 0.522076 CGTCGGTTAGTAGGTGCGAC 60.522 60.000 0.00 0.00 0.00 5.19
446 447 1.647545 CCGTCGGTTAGTAGGTGCGA 61.648 60.000 2.08 0.00 0.00 5.10
447 448 1.226491 CCGTCGGTTAGTAGGTGCG 60.226 63.158 2.08 0.00 0.00 5.34
448 449 0.179153 GTCCGTCGGTTAGTAGGTGC 60.179 60.000 11.88 0.00 0.00 5.01
482 483 0.327924 TGGATCGGCCAGACACAAAT 59.672 50.000 2.24 0.00 43.33 2.32
484 485 3.477582 TGGATCGGCCAGACACAA 58.522 55.556 2.24 0.00 43.33 3.33
494 495 2.758736 TTTTTGCCCATTTGGATCGG 57.241 45.000 0.00 0.00 37.39 4.18
526 528 1.202475 GGCCAACCAAAACGAACACAT 60.202 47.619 0.00 0.00 35.26 3.21
532 534 2.907917 CCGGGCCAACCAAAACGA 60.908 61.111 4.39 0.00 40.22 3.85
539 541 4.280019 AACTCCACCGGGCCAACC 62.280 66.667 6.32 0.00 0.00 3.77
545 547 3.966543 AAGGGCAACTCCACCGGG 61.967 66.667 6.32 0.00 36.21 5.73
565 572 5.634859 ACCTACCGTAGTTGTTTAACAATCG 59.365 40.000 13.84 16.51 40.59 3.34
588 595 3.002246 TGTGAAAATGTGAGAACGCTGAC 59.998 43.478 0.00 0.00 0.00 3.51
591 598 4.836125 AATGTGAAAATGTGAGAACGCT 57.164 36.364 0.00 0.00 0.00 5.07
599 606 5.130292 AGGCTGAGAAATGTGAAAATGTG 57.870 39.130 0.00 0.00 0.00 3.21
606 614 8.896744 CAAAATATCTAAGGCTGAGAAATGTGA 58.103 33.333 5.46 0.00 0.00 3.58
608 616 7.340232 TGCAAAATATCTAAGGCTGAGAAATGT 59.660 33.333 5.46 0.00 0.00 2.71
642 651 3.132289 AGAATGCGAACGAATCTAAGGGA 59.868 43.478 0.00 0.00 0.00 4.20
672 681 5.144100 CCACATACTTAATGGCCCCATTTA 58.856 41.667 16.96 8.04 43.32 1.40
678 687 2.489073 CCTCCCACATACTTAATGGCCC 60.489 54.545 0.00 0.00 40.16 5.80
692 702 2.876581 ACAAAGGAAATGACCTCCCAC 58.123 47.619 0.00 0.00 39.62 4.61
715 725 9.474920 TGCTTACAACAAATTAATTCTTCCAAG 57.525 29.630 0.10 3.30 0.00 3.61
720 730 9.143631 GCTCATGCTTACAACAAATTAATTCTT 57.856 29.630 0.10 0.00 36.03 2.52
771 781 5.238432 GCATATTCGTGATCACCCATTTACA 59.762 40.000 20.03 0.00 0.00 2.41
772 782 5.238432 TGCATATTCGTGATCACCCATTTAC 59.762 40.000 20.03 6.20 0.00 2.01
773 783 5.372373 TGCATATTCGTGATCACCCATTTA 58.628 37.500 20.03 5.81 0.00 1.40
774 784 4.206375 TGCATATTCGTGATCACCCATTT 58.794 39.130 20.03 4.88 0.00 2.32
775 785 3.819368 TGCATATTCGTGATCACCCATT 58.181 40.909 20.03 6.24 0.00 3.16
778 2168 3.372206 GCTATGCATATTCGTGATCACCC 59.628 47.826 20.03 0.00 0.00 4.61
857 2247 0.912487 TGGGGCCAAATCGTCCTACT 60.912 55.000 4.39 0.00 0.00 2.57
896 2286 3.117589 CTGTTAGGTCAACGGTCCG 57.882 57.895 10.48 10.48 40.26 4.79
1995 3803 5.884232 GCCTCCTGCATATCATTGAATATCA 59.116 40.000 0.00 0.00 40.77 2.15
2047 3855 2.900716 TCACATCAAACGTCACCTGA 57.099 45.000 0.00 0.00 0.00 3.86
2062 3870 0.035317 AGAAACCGCTGAGCATCACA 59.965 50.000 4.88 0.00 42.56 3.58
2077 3885 0.394216 CCATCCCGGCATCACAGAAA 60.394 55.000 0.00 0.00 0.00 2.52
2281 4089 2.092429 GCCCTCCTTACACAATCCATCA 60.092 50.000 0.00 0.00 0.00 3.07
2305 4113 6.037786 TCAACTCTCCTTACATCAAACGAT 57.962 37.500 0.00 0.00 0.00 3.73
2326 4134 2.711009 ACCACTCCTCACAAAATCCTCA 59.289 45.455 0.00 0.00 0.00 3.86
2797 4605 6.861065 AGTAATCGTTTCTTTGCTTCTTCA 57.139 33.333 0.00 0.00 0.00 3.02
2800 4608 6.706270 TCTCAAGTAATCGTTTCTTTGCTTCT 59.294 34.615 0.00 0.00 0.00 2.85
2914 4722 3.969287 TCCATGTCTCTCAGAACCTTG 57.031 47.619 0.00 0.00 0.00 3.61
3145 4953 9.937175 GTTACATTAGGAACTATTTCATTCTGC 57.063 33.333 0.00 0.00 42.38 4.26
3284 5092 0.924090 GAGAGTTCGGCGCACATTAG 59.076 55.000 12.93 0.00 0.00 1.73
3507 5315 4.992951 GCTTCTTTCCCGTTTCACTTAGTA 59.007 41.667 0.00 0.00 0.00 1.82
3542 5350 5.614324 TCCATCATCTTTTCCGACAGTAT 57.386 39.130 0.00 0.00 0.00 2.12
3593 5401 3.926058 AGTAACCACACCAGAAACAGT 57.074 42.857 0.00 0.00 0.00 3.55
3613 5421 0.107703 CATGCTTCCGGCTTCCAGTA 60.108 55.000 0.00 0.00 42.39 2.74
3727 5536 6.755141 CAGAATCCTTGCATCCAAATAAACAG 59.245 38.462 0.00 0.00 0.00 3.16
3827 5650 6.003326 TCTTGTAAGATGAAACCTTGCATCA 58.997 36.000 8.45 0.00 42.52 3.07
4140 5965 5.873179 ATCAATACAACCTAAACACGTGG 57.127 39.130 21.57 3.57 0.00 4.94
4144 5969 8.021396 GGTGAGAAATCAATACAACCTAAACAC 58.979 37.037 0.00 0.00 0.00 3.32
4393 6238 4.680237 CTCCGTTGCAGCCGTCCA 62.680 66.667 7.03 0.00 0.00 4.02
4946 6821 3.178046 GGAGGAAGGAGAAGAGAAGGTT 58.822 50.000 0.00 0.00 0.00 3.50
4985 6886 0.466543 ACGGTTGCAGGTCACTGTTA 59.533 50.000 0.00 0.00 46.62 2.41
5032 6933 1.768684 GACACACTTGCTGAGGGGGA 61.769 60.000 0.00 0.00 32.10 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.