Multiple sequence alignment - TraesCS6B01G123100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G123100 chr6B 100.000 2063 0 0 1 2063 117862028 117864090 0.000000e+00 3810.0
1 TraesCS6B01G123100 chr6B 100.000 517 0 0 2340 2856 117864367 117864883 0.000000e+00 955.0
2 TraesCS6B01G123100 chr6B 99.806 515 1 0 2342 2856 117873518 117874032 0.000000e+00 946.0
3 TraesCS6B01G123100 chr6B 93.617 188 8 2 1878 2063 536825587 536825402 7.790000e-71 278.0
4 TraesCS6B01G123100 chr6A 87.215 1533 119 34 386 1877 61669095 61670591 0.000000e+00 1674.0
5 TraesCS6B01G123100 chr6A 99.029 515 5 0 2342 2856 572831895 572831381 0.000000e+00 924.0
6 TraesCS6B01G123100 chr6A 88.571 70 8 0 423 492 61667794 61667863 5.070000e-13 86.1
7 TraesCS6B01G123100 chr6D 92.816 1044 43 17 866 1877 53607912 53606869 0.000000e+00 1483.0
8 TraesCS6B01G123100 chr6D 83.539 243 27 7 2 244 53608581 53608352 6.200000e-52 215.0
9 TraesCS6B01G123100 chr6D 88.991 109 12 0 715 823 53608116 53608008 4.960000e-28 135.0
10 TraesCS6B01G123100 chr6D 90.000 70 7 0 423 492 53608830 53608761 1.090000e-14 91.6
11 TraesCS6B01G123100 chr6D 93.182 44 2 1 942 984 53607880 53607837 2.380000e-06 63.9
12 TraesCS6B01G123100 chr3B 99.031 516 5 0 2341 2856 259558653 259559168 0.000000e+00 926.0
13 TraesCS6B01G123100 chr3B 93.122 189 9 2 1877 2063 778499304 778499118 1.010000e-69 274.0
14 TraesCS6B01G123100 chrUn 99.029 515 5 0 2342 2856 382065897 382065383 0.000000e+00 924.0
15 TraesCS6B01G123100 chrUn 98.839 517 6 0 2340 2856 425450784 425451300 0.000000e+00 922.0
16 TraesCS6B01G123100 chrUn 93.122 189 9 2 1877 2063 331576997 331577183 1.010000e-69 274.0
17 TraesCS6B01G123100 chr5A 99.029 515 5 0 2342 2856 46219213 46219727 0.000000e+00 924.0
18 TraesCS6B01G123100 chr4B 99.029 515 5 0 2342 2856 673022559 673023073 0.000000e+00 924.0
19 TraesCS6B01G123100 chr4B 98.839 517 6 0 2340 2856 40570588 40570072 0.000000e+00 922.0
20 TraesCS6B01G123100 chr4A 99.029 515 5 0 2342 2856 165542995 165543509 0.000000e+00 924.0
21 TraesCS6B01G123100 chr4A 93.651 189 7 4 1878 2063 734933070 734932884 7.790000e-71 278.0
22 TraesCS6B01G123100 chr7B 93.229 192 8 3 1874 2063 249946124 249945936 7.790000e-71 278.0
23 TraesCS6B01G123100 chr7B 90.955 199 11 5 1868 2063 123404842 123405036 7.850000e-66 261.0
24 TraesCS6B01G123100 chr3A 93.548 186 10 1 1878 2063 100409310 100409493 2.800000e-70 276.0
25 TraesCS6B01G123100 chr5B 93.085 188 9 2 1878 2063 705092531 705092346 3.630000e-69 272.0
26 TraesCS6B01G123100 chr5B 93.011 186 10 2 1878 2063 336407069 336406887 4.690000e-68 268.0
27 TraesCS6B01G123100 chr2A 81.197 117 21 1 14 129 767627733 767627849 3.030000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G123100 chr6B 117862028 117864883 2855 False 2382.50 3810 100.0000 1 2856 2 chr6B.!!$F2 2855
1 TraesCS6B01G123100 chr6B 117873518 117874032 514 False 946.00 946 99.8060 2342 2856 1 chr6B.!!$F1 514
2 TraesCS6B01G123100 chr6A 572831381 572831895 514 True 924.00 924 99.0290 2342 2856 1 chr6A.!!$R1 514
3 TraesCS6B01G123100 chr6A 61667794 61670591 2797 False 880.05 1674 87.8930 386 1877 2 chr6A.!!$F1 1491
4 TraesCS6B01G123100 chr6D 53606869 53608830 1961 True 397.70 1483 89.7056 2 1877 5 chr6D.!!$R1 1875
5 TraesCS6B01G123100 chr3B 259558653 259559168 515 False 926.00 926 99.0310 2341 2856 1 chr3B.!!$F1 515
6 TraesCS6B01G123100 chrUn 382065383 382065897 514 True 924.00 924 99.0290 2342 2856 1 chrUn.!!$R1 514
7 TraesCS6B01G123100 chrUn 425450784 425451300 516 False 922.00 922 98.8390 2340 2856 1 chrUn.!!$F2 516
8 TraesCS6B01G123100 chr5A 46219213 46219727 514 False 924.00 924 99.0290 2342 2856 1 chr5A.!!$F1 514
9 TraesCS6B01G123100 chr4B 673022559 673023073 514 False 924.00 924 99.0290 2342 2856 1 chr4B.!!$F1 514
10 TraesCS6B01G123100 chr4B 40570072 40570588 516 True 922.00 922 98.8390 2340 2856 1 chr4B.!!$R1 516
11 TraesCS6B01G123100 chr4A 165542995 165543509 514 False 924.00 924 99.0290 2342 2856 1 chr4A.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 1491 0.036732 ACACCAGCATGACGGATTGT 59.963 50.0 7.76 0.51 39.69 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 3041 0.109342 CAGAGGTGAGCCACAACCTT 59.891 55.0 7.49 0.0 36.78 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 306 9.204570 GAGTTAAACTTCACTGCTCAATTACTA 57.795 33.333 0.00 0.00 0.00 1.82
75 324 7.667043 ATTACTACATCAAACGACATGTTGT 57.333 32.000 13.26 13.26 40.84 3.32
130 379 4.755123 ACTGATCCAAAGAAAACTACACGG 59.245 41.667 0.00 0.00 0.00 4.94
136 385 6.731164 TCCAAAGAAAACTACACGGAAAATC 58.269 36.000 0.00 0.00 0.00 2.17
142 391 5.821516 AAACTACACGGAAAATCACACAA 57.178 34.783 0.00 0.00 0.00 3.33
163 412 9.758651 ACACAATTTAATAGAAAAACCACTTCC 57.241 29.630 0.00 0.00 0.00 3.46
164 413 9.981114 CACAATTTAATAGAAAAACCACTTCCT 57.019 29.630 0.00 0.00 0.00 3.36
169 418 6.650427 AATAGAAAAACCACTTCCTTGACC 57.350 37.500 0.00 0.00 0.00 4.02
170 419 2.949644 AGAAAAACCACTTCCTTGACCG 59.050 45.455 0.00 0.00 0.00 4.79
173 422 0.250338 AACCACTTCCTTGACCGCTC 60.250 55.000 0.00 0.00 0.00 5.03
174 423 1.376037 CCACTTCCTTGACCGCTCC 60.376 63.158 0.00 0.00 0.00 4.70
175 424 1.674057 CACTTCCTTGACCGCTCCT 59.326 57.895 0.00 0.00 0.00 3.69
176 425 0.895530 CACTTCCTTGACCGCTCCTA 59.104 55.000 0.00 0.00 0.00 2.94
178 427 1.187087 CTTCCTTGACCGCTCCTACT 58.813 55.000 0.00 0.00 0.00 2.57
179 428 2.291411 ACTTCCTTGACCGCTCCTACTA 60.291 50.000 0.00 0.00 0.00 1.82
180 429 2.054232 TCCTTGACCGCTCCTACTAG 57.946 55.000 0.00 0.00 0.00 2.57
184 433 2.039818 TGACCGCTCCTACTAGTCTG 57.960 55.000 0.00 0.00 0.00 3.51
185 434 1.558294 TGACCGCTCCTACTAGTCTGA 59.442 52.381 0.00 0.00 0.00 3.27
187 436 2.809696 GACCGCTCCTACTAGTCTGATC 59.190 54.545 0.00 0.00 0.00 2.92
189 438 1.801771 CGCTCCTACTAGTCTGATCGG 59.198 57.143 0.00 0.00 0.00 4.18
190 439 2.807472 CGCTCCTACTAGTCTGATCGGT 60.807 54.545 0.00 0.00 0.00 4.69
195 444 6.654161 GCTCCTACTAGTCTGATCGGTTTATA 59.346 42.308 0.00 0.00 0.00 0.98
198 447 9.064706 TCCTACTAGTCTGATCGGTTTATAAAG 57.935 37.037 0.00 0.00 0.00 1.85
199 448 8.298140 CCTACTAGTCTGATCGGTTTATAAAGG 58.702 40.741 0.00 0.00 0.00 3.11
200 449 7.893124 ACTAGTCTGATCGGTTTATAAAGGA 57.107 36.000 0.42 0.00 0.00 3.36
201 450 8.480133 ACTAGTCTGATCGGTTTATAAAGGAT 57.520 34.615 10.11 10.11 0.00 3.24
202 451 8.578151 ACTAGTCTGATCGGTTTATAAAGGATC 58.422 37.037 21.49 21.49 33.23 3.36
203 452 6.448006 AGTCTGATCGGTTTATAAAGGATCG 58.552 40.000 22.12 18.59 34.36 3.69
204 453 5.634020 GTCTGATCGGTTTATAAAGGATCGG 59.366 44.000 25.36 25.36 37.08 4.18
206 455 5.535333 TGATCGGTTTATAAAGGATCGGTC 58.465 41.667 22.12 17.53 34.36 4.79
207 456 5.069383 TGATCGGTTTATAAAGGATCGGTCA 59.931 40.000 22.12 19.04 34.36 4.02
209 458 5.732633 TCGGTTTATAAAGGATCGGTCAAA 58.267 37.500 0.00 0.00 0.00 2.69
210 459 5.813672 TCGGTTTATAAAGGATCGGTCAAAG 59.186 40.000 0.00 0.00 0.00 2.77
211 460 5.813672 CGGTTTATAAAGGATCGGTCAAAGA 59.186 40.000 0.00 0.00 0.00 2.52
212 461 6.482308 CGGTTTATAAAGGATCGGTCAAAGAT 59.518 38.462 0.00 0.00 0.00 2.40
213 462 7.518370 CGGTTTATAAAGGATCGGTCAAAGATG 60.518 40.741 0.00 0.00 0.00 2.90
214 463 6.861065 TTATAAAGGATCGGTCAAAGATGC 57.139 37.500 0.00 0.00 36.82 3.91
215 464 3.356529 AAAGGATCGGTCAAAGATGCT 57.643 42.857 0.00 0.00 46.40 3.79
216 465 2.611225 AGGATCGGTCAAAGATGCTC 57.389 50.000 0.00 0.00 41.89 4.26
219 468 2.123342 GATCGGTCAAAGATGCTCTCG 58.877 52.381 0.00 0.00 0.00 4.04
220 469 0.173481 TCGGTCAAAGATGCTCTCGG 59.827 55.000 0.00 0.00 0.00 4.63
221 470 0.173481 CGGTCAAAGATGCTCTCGGA 59.827 55.000 0.00 0.00 0.00 4.55
222 471 1.202463 CGGTCAAAGATGCTCTCGGAT 60.202 52.381 0.00 0.00 0.00 4.18
223 472 2.034685 CGGTCAAAGATGCTCTCGGATA 59.965 50.000 0.00 0.00 0.00 2.59
224 473 3.305676 CGGTCAAAGATGCTCTCGGATAT 60.306 47.826 0.00 0.00 0.00 1.63
225 474 4.082733 CGGTCAAAGATGCTCTCGGATATA 60.083 45.833 0.00 0.00 0.00 0.86
226 475 5.393569 CGGTCAAAGATGCTCTCGGATATAT 60.394 44.000 0.00 0.00 0.00 0.86
227 476 6.183360 CGGTCAAAGATGCTCTCGGATATATA 60.183 42.308 0.00 0.00 0.00 0.86
234 483 8.630054 AGATGCTCTCGGATATATAATAGACC 57.370 38.462 0.00 0.00 0.00 3.85
235 484 8.444783 AGATGCTCTCGGATATATAATAGACCT 58.555 37.037 0.00 0.00 0.00 3.85
236 485 8.630054 ATGCTCTCGGATATATAATAGACCTC 57.370 38.462 0.00 0.00 0.00 3.85
237 486 7.807198 TGCTCTCGGATATATAATAGACCTCT 58.193 38.462 0.00 0.00 0.00 3.69
241 490 9.327628 TCTCGGATATATAATAGACCTCTTTCG 57.672 37.037 0.00 0.00 0.00 3.46
242 491 9.111613 CTCGGATATATAATAGACCTCTTTCGT 57.888 37.037 0.00 0.00 0.00 3.85
243 492 8.890718 TCGGATATATAATAGACCTCTTTCGTG 58.109 37.037 0.00 0.00 0.00 4.35
244 493 8.675504 CGGATATATAATAGACCTCTTTCGTGT 58.324 37.037 0.00 0.00 0.00 4.49
252 501 1.597663 ACCTCTTTCGTGTTTCGCTTG 59.402 47.619 0.00 0.00 39.67 4.01
254 503 2.599848 CCTCTTTCGTGTTTCGCTTGTG 60.600 50.000 0.00 0.00 39.67 3.33
256 505 2.869801 TCTTTCGTGTTTCGCTTGTGAT 59.130 40.909 0.00 0.00 39.67 3.06
258 507 1.859383 TCGTGTTTCGCTTGTGATGA 58.141 45.000 0.00 0.00 39.67 2.92
259 508 2.205911 TCGTGTTTCGCTTGTGATGAA 58.794 42.857 0.00 0.00 39.67 2.57
260 509 2.609916 TCGTGTTTCGCTTGTGATGAAA 59.390 40.909 0.00 0.00 39.67 2.69
261 510 3.064134 TCGTGTTTCGCTTGTGATGAAAA 59.936 39.130 0.00 0.00 39.67 2.29
264 513 4.204978 GTGTTTCGCTTGTGATGAAAACAG 59.795 41.667 0.00 0.00 33.78 3.16
265 514 2.686558 TCGCTTGTGATGAAAACAGC 57.313 45.000 0.00 0.00 0.00 4.40
266 515 1.946081 TCGCTTGTGATGAAAACAGCA 59.054 42.857 0.00 0.00 0.00 4.41
268 517 3.750652 TCGCTTGTGATGAAAACAGCATA 59.249 39.130 0.00 0.00 0.00 3.14
271 520 5.464168 GCTTGTGATGAAAACAGCATAGTT 58.536 37.500 0.00 0.00 0.00 2.24
272 521 6.611381 GCTTGTGATGAAAACAGCATAGTTA 58.389 36.000 0.00 0.00 0.00 2.24
273 522 7.083858 GCTTGTGATGAAAACAGCATAGTTAA 58.916 34.615 0.00 0.00 0.00 2.01
274 523 7.594758 GCTTGTGATGAAAACAGCATAGTTAAA 59.405 33.333 0.00 0.00 0.00 1.52
276 525 9.979578 TTGTGATGAAAACAGCATAGTTAAATT 57.020 25.926 0.00 0.00 0.00 1.82
311 560 6.887002 AGGGATCAGTCATAAAACTTTTCTCC 59.113 38.462 0.00 0.00 0.00 3.71
313 562 7.066404 GGGATCAGTCATAAAACTTTTCTCCTC 59.934 40.741 0.00 0.00 0.00 3.71
314 563 7.826744 GGATCAGTCATAAAACTTTTCTCCTCT 59.173 37.037 0.00 0.00 0.00 3.69
315 564 9.877178 GATCAGTCATAAAACTTTTCTCCTCTA 57.123 33.333 0.00 0.00 0.00 2.43
322 571 9.678941 CATAAAACTTTTCTCCTCTAAAACACC 57.321 33.333 0.00 0.00 0.00 4.16
323 572 6.710597 AAACTTTTCTCCTCTAAAACACCC 57.289 37.500 0.00 0.00 0.00 4.61
324 573 4.726583 ACTTTTCTCCTCTAAAACACCCC 58.273 43.478 0.00 0.00 0.00 4.95
325 574 4.415846 ACTTTTCTCCTCTAAAACACCCCT 59.584 41.667 0.00 0.00 0.00 4.79
326 575 5.103643 ACTTTTCTCCTCTAAAACACCCCTT 60.104 40.000 0.00 0.00 0.00 3.95
327 576 4.635699 TTCTCCTCTAAAACACCCCTTC 57.364 45.455 0.00 0.00 0.00 3.46
328 577 2.565834 TCTCCTCTAAAACACCCCTTCG 59.434 50.000 0.00 0.00 0.00 3.79
329 578 2.302157 CTCCTCTAAAACACCCCTTCGT 59.698 50.000 0.00 0.00 0.00 3.85
330 579 2.038033 TCCTCTAAAACACCCCTTCGTG 59.962 50.000 0.00 0.00 39.75 4.35
332 581 3.064931 CTCTAAAACACCCCTTCGTGTC 58.935 50.000 0.00 0.00 46.19 3.67
333 582 2.435069 TCTAAAACACCCCTTCGTGTCA 59.565 45.455 0.00 0.00 46.19 3.58
334 583 2.358322 AAAACACCCCTTCGTGTCAT 57.642 45.000 0.00 0.00 46.19 3.06
335 584 3.495434 AAAACACCCCTTCGTGTCATA 57.505 42.857 0.00 0.00 46.19 2.15
336 585 3.495434 AAACACCCCTTCGTGTCATAA 57.505 42.857 0.00 0.00 46.19 1.90
337 586 3.495434 AACACCCCTTCGTGTCATAAA 57.505 42.857 0.00 0.00 46.19 1.40
338 587 3.495434 ACACCCCTTCGTGTCATAAAA 57.505 42.857 0.00 0.00 43.50 1.52
340 589 4.007659 ACACCCCTTCGTGTCATAAAATC 58.992 43.478 0.00 0.00 43.50 2.17
342 591 4.332819 CACCCCTTCGTGTCATAAAATCTC 59.667 45.833 0.00 0.00 0.00 2.75
343 592 4.019681 ACCCCTTCGTGTCATAAAATCTCA 60.020 41.667 0.00 0.00 0.00 3.27
345 594 5.414454 CCCCTTCGTGTCATAAAATCTCAAA 59.586 40.000 0.00 0.00 0.00 2.69
346 595 6.314784 CCCTTCGTGTCATAAAATCTCAAAC 58.685 40.000 0.00 0.00 0.00 2.93
347 596 6.314784 CCTTCGTGTCATAAAATCTCAAACC 58.685 40.000 0.00 0.00 0.00 3.27
349 598 6.721571 TCGTGTCATAAAATCTCAAACCTC 57.278 37.500 0.00 0.00 0.00 3.85
350 599 6.464222 TCGTGTCATAAAATCTCAAACCTCT 58.536 36.000 0.00 0.00 0.00 3.69
351 600 7.608153 TCGTGTCATAAAATCTCAAACCTCTA 58.392 34.615 0.00 0.00 0.00 2.43
353 602 8.717821 CGTGTCATAAAATCTCAAACCTCTAAA 58.282 33.333 0.00 0.00 0.00 1.85
364 613 8.848474 TCTCAAACCTCTAAAACTTCATAAGG 57.152 34.615 0.00 0.00 0.00 2.69
365 614 7.883311 TCTCAAACCTCTAAAACTTCATAAGGG 59.117 37.037 0.00 0.00 0.00 3.95
366 615 7.751646 TCAAACCTCTAAAACTTCATAAGGGA 58.248 34.615 0.00 0.00 0.00 4.20
369 618 6.583562 ACCTCTAAAACTTCATAAGGGATCG 58.416 40.000 0.00 0.00 0.00 3.69
370 619 5.992217 CCTCTAAAACTTCATAAGGGATCGG 59.008 44.000 0.00 0.00 0.00 4.18
371 620 6.408206 CCTCTAAAACTTCATAAGGGATCGGT 60.408 42.308 0.00 0.00 0.00 4.69
373 622 4.837093 AAACTTCATAAGGGATCGGTCA 57.163 40.909 0.00 0.00 0.00 4.02
376 625 4.770795 ACTTCATAAGGGATCGGTCAAAG 58.229 43.478 0.00 0.00 0.00 2.77
379 628 4.960938 TCATAAGGGATCGGTCAAAGATG 58.039 43.478 0.00 0.00 0.00 2.90
380 629 2.044123 AAGGGATCGGTCAAAGATGC 57.956 50.000 0.00 0.00 36.00 3.91
381 630 1.207791 AGGGATCGGTCAAAGATGCT 58.792 50.000 0.00 0.00 36.79 3.79
382 631 1.139853 AGGGATCGGTCAAAGATGCTC 59.860 52.381 0.00 0.00 36.79 4.26
383 632 1.139853 GGGATCGGTCAAAGATGCTCT 59.860 52.381 0.00 0.00 36.79 4.09
384 633 2.420687 GGGATCGGTCAAAGATGCTCTT 60.421 50.000 0.00 0.00 38.59 2.85
385 634 3.181465 GGGATCGGTCAAAGATGCTCTTA 60.181 47.826 0.00 0.00 35.27 2.10
386 635 4.054671 GGATCGGTCAAAGATGCTCTTAG 58.945 47.826 0.00 0.00 35.27 2.18
388 637 5.510520 GGATCGGTCAAAGATGCTCTTAGAT 60.511 44.000 0.00 1.91 35.27 1.98
389 638 6.294787 GGATCGGTCAAAGATGCTCTTAGATA 60.295 42.308 0.00 0.00 35.27 1.98
391 640 7.055667 TCGGTCAAAGATGCTCTTAGATAAT 57.944 36.000 0.00 0.00 35.27 1.28
392 641 8.178313 TCGGTCAAAGATGCTCTTAGATAATA 57.822 34.615 0.00 0.00 35.27 0.98
395 644 9.418045 GGTCAAAGATGCTCTTAGATAATAGAC 57.582 37.037 0.00 0.00 35.27 2.59
396 645 9.418045 GTCAAAGATGCTCTTAGATAATAGACC 57.582 37.037 0.00 0.00 35.27 3.85
413 1363 1.081442 CCTTTTTCGTGCTTCCGCC 60.081 57.895 0.00 0.00 34.43 6.13
416 1366 1.098712 TTTTTCGTGCTTCCGCCTGT 61.099 50.000 0.00 0.00 34.43 4.00
419 1369 3.414700 CGTGCTTCCGCCTGTGAC 61.415 66.667 0.00 0.00 34.43 3.67
425 1375 1.156736 CTTCCGCCTGTGACGAAAAT 58.843 50.000 0.00 0.00 0.00 1.82
482 1432 8.896744 TGTCCAAAGAATGCTTATCTAGAAATG 58.103 33.333 0.00 0.00 32.98 2.32
494 1444 4.824479 TCTAGAAATGACACCAGCATGA 57.176 40.909 0.00 0.00 39.69 3.07
499 1488 0.543277 ATGACACCAGCATGACGGAT 59.457 50.000 7.76 0.00 39.69 4.18
500 1489 0.324614 TGACACCAGCATGACGGATT 59.675 50.000 7.76 0.00 39.69 3.01
501 1490 0.729116 GACACCAGCATGACGGATTG 59.271 55.000 7.76 0.00 39.69 2.67
502 1491 0.036732 ACACCAGCATGACGGATTGT 59.963 50.000 7.76 0.51 39.69 2.71
515 1504 4.439305 ACGGATTGTCATTTGTGGAATG 57.561 40.909 0.00 0.00 45.31 2.67
516 1505 3.181397 CGGATTGTCATTTGTGGAATGC 58.819 45.455 0.00 0.00 43.93 3.56
517 1506 3.119388 CGGATTGTCATTTGTGGAATGCT 60.119 43.478 0.00 0.00 43.93 3.79
518 1507 4.096231 CGGATTGTCATTTGTGGAATGCTA 59.904 41.667 0.00 0.00 43.93 3.49
519 1508 5.221106 CGGATTGTCATTTGTGGAATGCTAT 60.221 40.000 0.00 0.00 43.93 2.97
520 1509 6.576185 GGATTGTCATTTGTGGAATGCTATT 58.424 36.000 0.00 0.00 43.93 1.73
521 1510 7.043565 GGATTGTCATTTGTGGAATGCTATTT 58.956 34.615 0.00 0.00 43.93 1.40
522 1511 7.550196 GGATTGTCATTTGTGGAATGCTATTTT 59.450 33.333 0.00 0.00 43.93 1.82
523 1512 8.851541 ATTGTCATTTGTGGAATGCTATTTTT 57.148 26.923 0.00 0.00 43.93 1.94
543 1532 4.461992 TTTCTTTTTGCTACGAGTTCCG 57.538 40.909 0.00 0.00 45.44 4.30
558 1547 3.941483 GAGTTCCGTGAATGTCATTCCAT 59.059 43.478 20.41 1.66 38.50 3.41
565 1554 5.505159 CCGTGAATGTCATTCCATGATGAAG 60.505 44.000 20.41 4.87 42.04 3.02
672 1670 2.111384 ACAGTAGGGGTATCTGTGCTG 58.889 52.381 0.00 0.00 40.29 4.41
678 1676 1.517832 GGTATCTGTGCTGGCGAGT 59.482 57.895 0.00 0.00 0.00 4.18
693 1691 2.492484 GGCGAGTAGAAGAGGACTTTCA 59.508 50.000 0.00 0.00 36.39 2.69
694 1692 3.131400 GGCGAGTAGAAGAGGACTTTCAT 59.869 47.826 0.00 0.00 36.39 2.57
703 1701 4.734398 AGAGGACTTTCATCAGCTACAG 57.266 45.455 0.00 0.00 28.01 2.74
704 1702 3.450457 AGAGGACTTTCATCAGCTACAGG 59.550 47.826 0.00 0.00 28.01 4.00
705 1703 2.093235 AGGACTTTCATCAGCTACAGGC 60.093 50.000 0.00 0.00 42.19 4.85
706 1704 2.284190 GACTTTCATCAGCTACAGGCC 58.716 52.381 0.00 0.00 43.05 5.19
707 1705 1.912043 ACTTTCATCAGCTACAGGCCT 59.088 47.619 0.00 0.00 43.05 5.19
708 1706 3.107601 ACTTTCATCAGCTACAGGCCTA 58.892 45.455 3.98 0.00 43.05 3.93
709 1707 3.118592 ACTTTCATCAGCTACAGGCCTAC 60.119 47.826 3.98 0.00 43.05 3.18
710 1708 2.159179 TCATCAGCTACAGGCCTACA 57.841 50.000 3.98 0.00 43.05 2.74
711 1709 2.466846 TCATCAGCTACAGGCCTACAA 58.533 47.619 3.98 0.00 43.05 2.41
712 1710 2.168521 TCATCAGCTACAGGCCTACAAC 59.831 50.000 3.98 0.00 43.05 3.32
713 1711 0.902531 TCAGCTACAGGCCTACAACC 59.097 55.000 3.98 0.00 43.05 3.77
824 1823 3.425713 CACTTGCATGCCGTCGCT 61.426 61.111 16.68 0.00 35.36 4.93
825 1824 3.425713 ACTTGCATGCCGTCGCTG 61.426 61.111 16.68 0.00 35.36 5.18
826 1825 3.425713 CTTGCATGCCGTCGCTGT 61.426 61.111 16.68 0.00 35.36 4.40
827 1826 2.969806 CTTGCATGCCGTCGCTGTT 61.970 57.895 16.68 0.00 35.36 3.16
828 1827 2.839324 CTTGCATGCCGTCGCTGTTC 62.839 60.000 16.68 0.00 35.36 3.18
829 1828 3.422303 GCATGCCGTCGCTGTTCA 61.422 61.111 6.36 0.00 35.36 3.18
830 1829 2.476051 CATGCCGTCGCTGTTCAC 59.524 61.111 0.00 0.00 35.36 3.18
831 1830 3.112075 ATGCCGTCGCTGTTCACG 61.112 61.111 0.00 0.00 35.36 4.35
832 1831 3.858868 ATGCCGTCGCTGTTCACGT 62.859 57.895 0.00 0.00 34.06 4.49
833 1832 3.335534 GCCGTCGCTGTTCACGTT 61.336 61.111 0.00 0.00 34.06 3.99
835 1834 1.639534 CCGTCGCTGTTCACGTTTT 59.360 52.632 0.00 0.00 34.06 2.43
838 1837 1.395573 CGTCGCTGTTCACGTTTTCTC 60.396 52.381 0.00 0.00 0.00 2.87
839 1838 1.070776 GTCGCTGTTCACGTTTTCTCC 60.071 52.381 0.00 0.00 0.00 3.71
860 1859 2.359850 TGGCTGCCGGTTGACATC 60.360 61.111 14.98 0.00 0.00 3.06
861 1860 3.134127 GGCTGCCGGTTGACATCC 61.134 66.667 1.35 0.00 0.00 3.51
864 1919 1.296392 CTGCCGGTTGACATCCTCA 59.704 57.895 1.90 0.00 0.00 3.86
870 1925 1.134580 CGGTTGACATCCTCATCAGCT 60.135 52.381 1.16 0.00 0.00 4.24
920 1975 1.228063 CACTGCAACCCAGCTGACT 60.228 57.895 17.39 0.00 45.78 3.41
938 1993 4.928263 TGACTATCGATCCATCTCTCCAT 58.072 43.478 0.00 0.00 0.00 3.41
943 2005 3.691575 TCGATCCATCTCTCCATAGACC 58.308 50.000 0.00 0.00 0.00 3.85
960 2033 2.987547 CCCACTGCAACCCAGCTG 60.988 66.667 6.78 6.78 45.78 4.24
961 2034 2.113774 CCACTGCAACCCAGCTGA 59.886 61.111 17.39 0.00 45.78 4.26
966 2039 1.303561 TGCAACCCAGCTGACCATC 60.304 57.895 17.39 1.69 34.99 3.51
1132 2205 2.520741 CGAGGGAGGAGGAGGAGC 60.521 72.222 0.00 0.00 0.00 4.70
1154 2227 2.046217 GAACCTCGTCCCCAAGCC 60.046 66.667 0.00 0.00 0.00 4.35
1155 2228 3.952628 GAACCTCGTCCCCAAGCCG 62.953 68.421 0.00 0.00 0.00 5.52
1217 2292 0.597898 GATAGCCTTCGCCGTCTTCC 60.598 60.000 0.00 0.00 34.57 3.46
1225 2300 0.892755 TCGCCGTCTTCCATGTAAGT 59.107 50.000 0.00 0.00 0.00 2.24
1237 2312 0.459585 ATGTAAGTGCAGCGGTACCG 60.460 55.000 30.06 30.06 43.09 4.02
1310 2385 2.038387 AAACTGAACGCAGGTGAAGT 57.962 45.000 0.00 0.00 42.49 3.01
1715 2811 2.520020 ACGACGTCCACCACCAGA 60.520 61.111 10.58 0.00 0.00 3.86
1812 2908 4.838486 GGTCGTCAGAGCTCCGCG 62.838 72.222 10.93 12.65 41.38 6.46
1868 2967 4.082523 CCTGACGGACGGTGCCAT 62.083 66.667 0.00 0.00 0.00 4.40
1877 2976 1.382522 GACGGTGCCATGACATGATT 58.617 50.000 17.24 0.00 0.00 2.57
1878 2977 1.064505 GACGGTGCCATGACATGATTG 59.935 52.381 17.24 1.47 0.00 2.67
1879 2978 1.097232 CGGTGCCATGACATGATTGT 58.903 50.000 17.24 0.00 39.32 2.71
1880 2979 1.473677 CGGTGCCATGACATGATTGTT 59.526 47.619 17.24 0.00 35.79 2.83
1881 2980 2.732912 CGGTGCCATGACATGATTGTTG 60.733 50.000 17.24 0.00 35.79 3.33
1882 2981 2.492881 GGTGCCATGACATGATTGTTGA 59.507 45.455 17.24 0.00 35.79 3.18
1883 2982 3.428452 GGTGCCATGACATGATTGTTGAG 60.428 47.826 17.24 0.00 35.79 3.02
1884 2983 3.192001 GTGCCATGACATGATTGTTGAGT 59.808 43.478 17.24 0.00 35.79 3.41
1885 2984 4.395854 GTGCCATGACATGATTGTTGAGTA 59.604 41.667 17.24 0.00 35.79 2.59
1886 2985 5.066893 GTGCCATGACATGATTGTTGAGTAT 59.933 40.000 17.24 0.00 35.79 2.12
1887 2986 6.260714 GTGCCATGACATGATTGTTGAGTATA 59.739 38.462 17.24 0.00 35.79 1.47
1888 2987 6.999871 TGCCATGACATGATTGTTGAGTATAT 59.000 34.615 17.24 0.00 35.79 0.86
1889 2988 7.503230 TGCCATGACATGATTGTTGAGTATATT 59.497 33.333 17.24 0.00 35.79 1.28
1890 2989 7.806487 GCCATGACATGATTGTTGAGTATATTG 59.194 37.037 17.24 0.00 35.79 1.90
1891 2990 8.843262 CCATGACATGATTGTTGAGTATATTGT 58.157 33.333 17.24 0.00 35.79 2.71
1892 2991 9.659830 CATGACATGATTGTTGAGTATATTGTG 57.340 33.333 10.03 0.00 35.79 3.33
1893 2992 8.791327 TGACATGATTGTTGAGTATATTGTGT 57.209 30.769 0.00 0.00 35.79 3.72
1894 2993 9.883142 TGACATGATTGTTGAGTATATTGTGTA 57.117 29.630 0.00 0.00 35.79 2.90
1896 2995 8.817100 ACATGATTGTTGAGTATATTGTGTACG 58.183 33.333 0.00 0.00 29.55 3.67
1897 2996 8.817100 CATGATTGTTGAGTATATTGTGTACGT 58.183 33.333 0.00 0.00 0.00 3.57
1898 2997 8.180317 TGATTGTTGAGTATATTGTGTACGTG 57.820 34.615 0.00 0.00 0.00 4.49
1899 2998 7.815549 TGATTGTTGAGTATATTGTGTACGTGT 59.184 33.333 0.00 0.00 0.00 4.49
1900 2999 9.292846 GATTGTTGAGTATATTGTGTACGTGTA 57.707 33.333 0.00 0.00 0.00 2.90
1901 3000 9.811995 ATTGTTGAGTATATTGTGTACGTGTAT 57.188 29.630 0.00 0.00 0.00 2.29
1906 3005 9.887406 TGAGTATATTGTGTACGTGTATATGTG 57.113 33.333 0.00 0.00 0.00 3.21
1907 3006 9.888878 GAGTATATTGTGTACGTGTATATGTGT 57.111 33.333 0.00 0.00 0.00 3.72
1908 3007 9.673454 AGTATATTGTGTACGTGTATATGTGTG 57.327 33.333 0.00 0.00 0.00 3.82
1909 3008 9.454585 GTATATTGTGTACGTGTATATGTGTGT 57.545 33.333 0.00 0.00 0.00 3.72
1911 3010 7.980742 ATTGTGTACGTGTATATGTGTGTAG 57.019 36.000 0.00 0.00 0.00 2.74
1912 3011 5.882553 TGTGTACGTGTATATGTGTGTAGG 58.117 41.667 0.00 0.00 0.00 3.18
1913 3012 5.163632 TGTGTACGTGTATATGTGTGTAGGG 60.164 44.000 0.00 0.00 0.00 3.53
1914 3013 3.447918 ACGTGTATATGTGTGTAGGGC 57.552 47.619 0.00 0.00 0.00 5.19
1915 3014 2.101917 ACGTGTATATGTGTGTAGGGCC 59.898 50.000 0.00 0.00 0.00 5.80
1916 3015 2.547218 CGTGTATATGTGTGTAGGGCCC 60.547 54.545 16.46 16.46 0.00 5.80
1917 3016 2.436542 GTGTATATGTGTGTAGGGCCCA 59.563 50.000 27.56 7.27 0.00 5.36
1918 3017 2.436542 TGTATATGTGTGTAGGGCCCAC 59.563 50.000 27.56 20.24 0.00 4.61
1919 3018 0.843984 ATATGTGTGTAGGGCCCACC 59.156 55.000 27.56 14.70 40.67 4.61
1928 3027 2.035783 GGGCCCACCTCCTGTTTC 59.964 66.667 19.95 0.00 35.85 2.78
1929 3028 2.539081 GGGCCCACCTCCTGTTTCT 61.539 63.158 19.95 0.00 35.85 2.52
1930 3029 1.460699 GGCCCACCTCCTGTTTCTT 59.539 57.895 0.00 0.00 0.00 2.52
1931 3030 0.178961 GGCCCACCTCCTGTTTCTTT 60.179 55.000 0.00 0.00 0.00 2.52
1932 3031 0.961753 GCCCACCTCCTGTTTCTTTG 59.038 55.000 0.00 0.00 0.00 2.77
1933 3032 1.754201 GCCCACCTCCTGTTTCTTTGT 60.754 52.381 0.00 0.00 0.00 2.83
1934 3033 2.488347 GCCCACCTCCTGTTTCTTTGTA 60.488 50.000 0.00 0.00 0.00 2.41
1935 3034 3.814316 GCCCACCTCCTGTTTCTTTGTAT 60.814 47.826 0.00 0.00 0.00 2.29
1936 3035 4.566907 GCCCACCTCCTGTTTCTTTGTATA 60.567 45.833 0.00 0.00 0.00 1.47
1937 3036 5.186198 CCCACCTCCTGTTTCTTTGTATAG 58.814 45.833 0.00 0.00 0.00 1.31
1938 3037 5.280521 CCCACCTCCTGTTTCTTTGTATAGT 60.281 44.000 0.00 0.00 0.00 2.12
1939 3038 6.238648 CCACCTCCTGTTTCTTTGTATAGTT 58.761 40.000 0.00 0.00 0.00 2.24
1940 3039 7.391620 CCACCTCCTGTTTCTTTGTATAGTTA 58.608 38.462 0.00 0.00 0.00 2.24
1941 3040 8.047310 CCACCTCCTGTTTCTTTGTATAGTTAT 58.953 37.037 0.00 0.00 0.00 1.89
1952 3051 8.726870 TCTTTGTATAGTTATAAGGTTGTGGC 57.273 34.615 0.00 0.00 0.00 5.01
1953 3052 8.545472 TCTTTGTATAGTTATAAGGTTGTGGCT 58.455 33.333 0.00 0.00 0.00 4.75
1954 3053 8.726870 TTTGTATAGTTATAAGGTTGTGGCTC 57.273 34.615 0.00 0.00 0.00 4.70
1955 3054 7.426606 TGTATAGTTATAAGGTTGTGGCTCA 57.573 36.000 0.00 0.00 0.00 4.26
1956 3055 7.270047 TGTATAGTTATAAGGTTGTGGCTCAC 58.730 38.462 0.00 0.00 34.56 3.51
1957 3056 3.951663 AGTTATAAGGTTGTGGCTCACC 58.048 45.455 3.33 0.00 32.73 4.02
1958 3057 3.587506 AGTTATAAGGTTGTGGCTCACCT 59.412 43.478 3.33 5.30 36.63 4.00
1959 3058 2.789409 ATAAGGTTGTGGCTCACCTC 57.211 50.000 9.89 0.00 36.63 3.85
1960 3059 1.729586 TAAGGTTGTGGCTCACCTCT 58.270 50.000 9.89 5.37 36.63 3.69
1961 3060 0.109342 AAGGTTGTGGCTCACCTCTG 59.891 55.000 9.89 0.00 36.63 3.35
1962 3061 1.056700 AGGTTGTGGCTCACCTCTGT 61.057 55.000 3.33 0.00 36.63 3.41
1963 3062 0.685097 GGTTGTGGCTCACCTCTGTA 59.315 55.000 3.33 0.00 36.63 2.74
1964 3063 1.608283 GGTTGTGGCTCACCTCTGTAC 60.608 57.143 3.33 0.00 36.63 2.90
1965 3064 1.344763 GTTGTGGCTCACCTCTGTACT 59.655 52.381 0.00 0.00 36.63 2.73
1966 3065 1.717032 TGTGGCTCACCTCTGTACTT 58.283 50.000 0.00 0.00 36.63 2.24
1967 3066 2.884320 TGTGGCTCACCTCTGTACTTA 58.116 47.619 0.00 0.00 36.63 2.24
1968 3067 3.441101 TGTGGCTCACCTCTGTACTTAT 58.559 45.455 0.00 0.00 36.63 1.73
1969 3068 4.606210 TGTGGCTCACCTCTGTACTTATA 58.394 43.478 0.00 0.00 36.63 0.98
1970 3069 5.208890 TGTGGCTCACCTCTGTACTTATAT 58.791 41.667 0.00 0.00 36.63 0.86
1971 3070 6.370453 TGTGGCTCACCTCTGTACTTATATA 58.630 40.000 0.00 0.00 36.63 0.86
1972 3071 7.010771 TGTGGCTCACCTCTGTACTTATATAT 58.989 38.462 0.00 0.00 36.63 0.86
1973 3072 8.168058 TGTGGCTCACCTCTGTACTTATATATA 58.832 37.037 0.00 0.00 36.63 0.86
1974 3073 8.460428 GTGGCTCACCTCTGTACTTATATATAC 58.540 40.741 0.00 0.00 36.63 1.47
1975 3074 7.336176 TGGCTCACCTCTGTACTTATATATACG 59.664 40.741 0.00 0.00 36.63 3.06
1976 3075 7.336427 GGCTCACCTCTGTACTTATATATACGT 59.664 40.741 7.04 7.04 0.00 3.57
1977 3076 8.176365 GCTCACCTCTGTACTTATATATACGTG 58.824 40.741 11.18 0.06 0.00 4.49
1978 3077 8.037382 TCACCTCTGTACTTATATATACGTGC 57.963 38.462 11.18 10.35 0.00 5.34
1979 3078 7.120285 TCACCTCTGTACTTATATATACGTGCC 59.880 40.741 11.18 3.91 0.00 5.01
1980 3079 7.120873 CACCTCTGTACTTATATATACGTGCCT 59.879 40.741 11.18 0.00 0.00 4.75
1981 3080 7.120873 ACCTCTGTACTTATATATACGTGCCTG 59.879 40.741 11.18 6.66 0.00 4.85
1982 3081 7.387119 TCTGTACTTATATATACGTGCCTGG 57.613 40.000 11.18 0.00 0.00 4.45
1983 3082 6.944290 TCTGTACTTATATATACGTGCCTGGT 59.056 38.462 11.18 0.00 0.00 4.00
1984 3083 6.916440 TGTACTTATATATACGTGCCTGGTG 58.084 40.000 11.18 0.00 0.00 4.17
1985 3084 4.817517 ACTTATATATACGTGCCTGGTGC 58.182 43.478 0.00 0.00 41.77 5.01
1994 3093 2.359850 GCCTGGTGCACCGATCAA 60.360 61.111 30.07 12.05 40.77 2.57
1995 3094 1.750399 GCCTGGTGCACCGATCAAT 60.750 57.895 30.07 0.00 40.77 2.57
1996 3095 0.463654 GCCTGGTGCACCGATCAATA 60.464 55.000 30.07 10.51 40.77 1.90
1997 3096 1.299541 CCTGGTGCACCGATCAATAC 58.700 55.000 30.07 4.16 39.43 1.89
1998 3097 1.406751 CCTGGTGCACCGATCAATACA 60.407 52.381 30.07 8.97 39.43 2.29
1999 3098 2.564771 CTGGTGCACCGATCAATACAT 58.435 47.619 30.07 0.00 39.43 2.29
2000 3099 2.545526 CTGGTGCACCGATCAATACATC 59.454 50.000 30.07 2.63 39.43 3.06
2001 3100 1.526887 GGTGCACCGATCAATACATCG 59.473 52.381 22.49 0.00 44.45 3.84
2011 3110 5.912360 GATCAATACATCGAGATTGCACA 57.088 39.130 10.94 0.00 33.82 4.57
2012 3111 5.913637 GATCAATACATCGAGATTGCACAG 58.086 41.667 10.94 0.00 33.82 3.66
2013 3112 3.557185 TCAATACATCGAGATTGCACAGC 59.443 43.478 10.94 0.00 33.82 4.40
2014 3113 1.939974 TACATCGAGATTGCACAGCC 58.060 50.000 0.00 0.00 0.00 4.85
2015 3114 0.745845 ACATCGAGATTGCACAGCCC 60.746 55.000 0.00 0.00 0.00 5.19
2016 3115 0.745486 CATCGAGATTGCACAGCCCA 60.745 55.000 0.00 0.00 0.00 5.36
2017 3116 0.182061 ATCGAGATTGCACAGCCCAT 59.818 50.000 0.00 0.00 0.00 4.00
2018 3117 0.829990 TCGAGATTGCACAGCCCATA 59.170 50.000 0.00 0.00 0.00 2.74
2019 3118 1.209261 TCGAGATTGCACAGCCCATAA 59.791 47.619 0.00 0.00 0.00 1.90
2020 3119 1.331756 CGAGATTGCACAGCCCATAAC 59.668 52.381 0.00 0.00 0.00 1.89
2021 3120 2.648059 GAGATTGCACAGCCCATAACT 58.352 47.619 0.00 0.00 0.00 2.24
2022 3121 3.019564 GAGATTGCACAGCCCATAACTT 58.980 45.455 0.00 0.00 0.00 2.66
2023 3122 2.756760 AGATTGCACAGCCCATAACTTG 59.243 45.455 0.00 0.00 0.00 3.16
2024 3123 1.993956 TTGCACAGCCCATAACTTGT 58.006 45.000 0.00 0.00 0.00 3.16
2025 3124 1.533625 TGCACAGCCCATAACTTGTC 58.466 50.000 0.00 0.00 0.00 3.18
2026 3125 0.811281 GCACAGCCCATAACTTGTCC 59.189 55.000 0.00 0.00 0.00 4.02
2027 3126 1.614317 GCACAGCCCATAACTTGTCCT 60.614 52.381 0.00 0.00 0.00 3.85
2028 3127 2.795329 CACAGCCCATAACTTGTCCTT 58.205 47.619 0.00 0.00 0.00 3.36
2029 3128 3.157087 CACAGCCCATAACTTGTCCTTT 58.843 45.455 0.00 0.00 0.00 3.11
2030 3129 3.573967 CACAGCCCATAACTTGTCCTTTT 59.426 43.478 0.00 0.00 0.00 2.27
2031 3130 4.764823 CACAGCCCATAACTTGTCCTTTTA 59.235 41.667 0.00 0.00 0.00 1.52
2032 3131 5.242838 CACAGCCCATAACTTGTCCTTTTAA 59.757 40.000 0.00 0.00 0.00 1.52
2033 3132 5.836358 ACAGCCCATAACTTGTCCTTTTAAA 59.164 36.000 0.00 0.00 0.00 1.52
2034 3133 6.496911 ACAGCCCATAACTTGTCCTTTTAAAT 59.503 34.615 0.00 0.00 0.00 1.40
2035 3134 6.813152 CAGCCCATAACTTGTCCTTTTAAATG 59.187 38.462 0.00 0.00 0.00 2.32
2036 3135 6.723977 AGCCCATAACTTGTCCTTTTAAATGA 59.276 34.615 2.77 0.00 0.00 2.57
2037 3136 7.400052 AGCCCATAACTTGTCCTTTTAAATGAT 59.600 33.333 2.77 0.00 0.00 2.45
2038 3137 8.691797 GCCCATAACTTGTCCTTTTAAATGATA 58.308 33.333 2.77 0.00 0.00 2.15
2049 3148 9.617975 GTCCTTTTAAATGATATCTATTGCAGC 57.382 33.333 3.98 0.00 0.00 5.25
2050 3149 9.353431 TCCTTTTAAATGATATCTATTGCAGCA 57.647 29.630 3.98 0.00 0.00 4.41
2051 3150 9.403110 CCTTTTAAATGATATCTATTGCAGCAC 57.597 33.333 3.98 0.00 0.00 4.40
2052 3151 9.110617 CTTTTAAATGATATCTATTGCAGCACG 57.889 33.333 3.98 0.00 0.00 5.34
2053 3152 7.961325 TTAAATGATATCTATTGCAGCACGA 57.039 32.000 3.98 0.00 0.00 4.35
2054 3153 8.552083 TTAAATGATATCTATTGCAGCACGAT 57.448 30.769 3.98 0.15 0.00 3.73
2055 3154 6.659361 AATGATATCTATTGCAGCACGATC 57.341 37.500 3.98 0.00 0.00 3.69
2056 3155 4.498241 TGATATCTATTGCAGCACGATCC 58.502 43.478 3.98 0.00 0.00 3.36
2057 3156 4.221482 TGATATCTATTGCAGCACGATCCT 59.779 41.667 3.98 0.00 0.00 3.24
2058 3157 5.418840 TGATATCTATTGCAGCACGATCCTA 59.581 40.000 3.98 0.00 0.00 2.94
2059 3158 4.607293 ATCTATTGCAGCACGATCCTAA 57.393 40.909 0.00 0.00 0.00 2.69
2060 3159 3.717707 TCTATTGCAGCACGATCCTAAC 58.282 45.455 0.00 0.00 0.00 2.34
2061 3160 1.668419 ATTGCAGCACGATCCTAACC 58.332 50.000 0.00 0.00 0.00 2.85
2062 3161 0.392461 TTGCAGCACGATCCTAACCC 60.392 55.000 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.320352 ACCCAAAAGTAAATGAATTTGTGTTAC 57.680 29.630 0.00 0.00 32.29 2.50
1 2 9.535878 GACCCAAAAGTAAATGAATTTGTGTTA 57.464 29.630 0.00 0.00 32.29 2.41
3 4 7.560368 TGACCCAAAAGTAAATGAATTTGTGT 58.440 30.769 0.00 0.00 32.29 3.72
4 5 8.606040 ATGACCCAAAAGTAAATGAATTTGTG 57.394 30.769 0.00 0.00 32.29 3.33
5 6 7.598493 CGATGACCCAAAAGTAAATGAATTTGT 59.402 33.333 0.00 0.00 32.29 2.83
57 306 4.095632 TGTGAACAACATGTCGTTTGATGT 59.904 37.500 3.20 0.00 34.86 3.06
110 359 5.934935 TTCCGTGTAGTTTTCTTTGGATC 57.065 39.130 0.00 0.00 0.00 3.36
112 361 6.319152 TGATTTTCCGTGTAGTTTTCTTTGGA 59.681 34.615 0.00 0.00 0.00 3.53
153 402 0.182775 AGCGGTCAAGGAAGTGGTTT 59.817 50.000 0.00 0.00 0.00 3.27
154 403 0.250338 GAGCGGTCAAGGAAGTGGTT 60.250 55.000 10.30 0.00 0.00 3.67
156 405 1.376037 GGAGCGGTCAAGGAAGTGG 60.376 63.158 17.59 0.00 0.00 4.00
157 406 0.895530 TAGGAGCGGTCAAGGAAGTG 59.104 55.000 17.59 0.00 0.00 3.16
158 407 0.896226 GTAGGAGCGGTCAAGGAAGT 59.104 55.000 17.59 0.00 0.00 3.01
159 408 1.187087 AGTAGGAGCGGTCAAGGAAG 58.813 55.000 17.59 0.00 0.00 3.46
160 409 2.291411 ACTAGTAGGAGCGGTCAAGGAA 60.291 50.000 17.59 0.00 0.00 3.36
161 410 1.284198 ACTAGTAGGAGCGGTCAAGGA 59.716 52.381 17.59 0.00 0.00 3.36
163 412 2.356382 CAGACTAGTAGGAGCGGTCAAG 59.644 54.545 17.59 7.64 0.00 3.02
164 413 2.026542 TCAGACTAGTAGGAGCGGTCAA 60.027 50.000 17.59 0.34 0.00 3.18
165 414 1.558294 TCAGACTAGTAGGAGCGGTCA 59.442 52.381 17.59 0.00 0.00 4.02
166 415 2.328819 TCAGACTAGTAGGAGCGGTC 57.671 55.000 5.93 5.93 0.00 4.79
167 416 2.807472 CGATCAGACTAGTAGGAGCGGT 60.807 54.545 20.15 0.00 35.73 5.68
168 417 1.801771 CGATCAGACTAGTAGGAGCGG 59.198 57.143 20.15 7.22 35.73 5.52
169 418 1.801771 CCGATCAGACTAGTAGGAGCG 59.198 57.143 20.68 20.68 38.73 5.03
170 419 2.853705 ACCGATCAGACTAGTAGGAGC 58.146 52.381 0.00 0.00 0.00 4.70
173 422 8.298140 CCTTTATAAACCGATCAGACTAGTAGG 58.702 40.741 0.00 0.00 0.00 3.18
174 423 9.064706 TCCTTTATAAACCGATCAGACTAGTAG 57.935 37.037 0.00 0.00 0.00 2.57
175 424 8.985315 TCCTTTATAAACCGATCAGACTAGTA 57.015 34.615 0.00 0.00 0.00 1.82
176 425 7.893124 TCCTTTATAAACCGATCAGACTAGT 57.107 36.000 0.00 0.00 0.00 2.57
178 427 7.309012 CCGATCCTTTATAAACCGATCAGACTA 60.309 40.741 20.38 0.00 31.61 2.59
179 428 6.448006 CGATCCTTTATAAACCGATCAGACT 58.552 40.000 20.38 0.00 31.61 3.24
180 429 5.634020 CCGATCCTTTATAAACCGATCAGAC 59.366 44.000 20.38 5.09 31.61 3.51
184 433 5.535333 TGACCGATCCTTTATAAACCGATC 58.465 41.667 14.98 14.98 0.00 3.69
185 434 5.540400 TGACCGATCCTTTATAAACCGAT 57.460 39.130 0.00 0.00 0.00 4.18
187 436 5.813672 TCTTTGACCGATCCTTTATAAACCG 59.186 40.000 0.00 0.00 0.00 4.44
189 438 7.012421 AGCATCTTTGACCGATCCTTTATAAAC 59.988 37.037 0.00 0.00 0.00 2.01
190 439 7.054124 AGCATCTTTGACCGATCCTTTATAAA 58.946 34.615 0.00 0.00 0.00 1.40
195 444 3.274288 GAGCATCTTTGACCGATCCTTT 58.726 45.455 0.00 0.00 0.00 3.11
210 459 8.630054 AGGTCTATTATATATCCGAGAGCATC 57.370 38.462 16.20 0.00 34.64 3.91
211 460 8.444783 AGAGGTCTATTATATATCCGAGAGCAT 58.555 37.037 16.20 6.98 34.64 3.79
212 461 7.807198 AGAGGTCTATTATATATCCGAGAGCA 58.193 38.462 16.20 0.00 34.64 4.26
213 462 8.685838 AAGAGGTCTATTATATATCCGAGAGC 57.314 38.462 9.98 9.98 0.00 4.09
215 464 9.327628 CGAAAGAGGTCTATTATATATCCGAGA 57.672 37.037 0.00 0.00 0.00 4.04
216 465 9.111613 ACGAAAGAGGTCTATTATATATCCGAG 57.888 37.037 0.00 0.00 0.00 4.63
222 471 9.888878 CGAAACACGAAAGAGGTCTATTATATA 57.111 33.333 0.00 0.00 45.77 0.86
223 472 7.381678 GCGAAACACGAAAGAGGTCTATTATAT 59.618 37.037 0.00 0.00 45.77 0.86
224 473 6.694411 GCGAAACACGAAAGAGGTCTATTATA 59.306 38.462 0.00 0.00 45.77 0.98
225 474 5.519206 GCGAAACACGAAAGAGGTCTATTAT 59.481 40.000 0.00 0.00 45.77 1.28
226 475 4.860907 GCGAAACACGAAAGAGGTCTATTA 59.139 41.667 0.00 0.00 45.77 0.98
227 476 3.678548 GCGAAACACGAAAGAGGTCTATT 59.321 43.478 0.00 0.00 45.77 1.73
230 479 1.068741 AGCGAAACACGAAAGAGGTCT 59.931 47.619 0.00 0.00 45.77 3.85
231 480 1.499049 AGCGAAACACGAAAGAGGTC 58.501 50.000 0.00 0.00 45.77 3.85
232 481 1.597663 CAAGCGAAACACGAAAGAGGT 59.402 47.619 0.00 0.00 45.77 3.85
233 482 1.597663 ACAAGCGAAACACGAAAGAGG 59.402 47.619 0.00 0.00 45.77 3.69
234 483 2.284150 TCACAAGCGAAACACGAAAGAG 59.716 45.455 0.00 0.00 45.77 2.85
235 484 2.272678 TCACAAGCGAAACACGAAAGA 58.727 42.857 0.00 0.00 45.77 2.52
236 485 2.730183 TCACAAGCGAAACACGAAAG 57.270 45.000 0.00 0.00 45.77 2.62
237 486 2.609916 TCATCACAAGCGAAACACGAAA 59.390 40.909 0.00 0.00 45.77 3.46
241 490 4.101942 TGTTTTCATCACAAGCGAAACAC 58.898 39.130 0.00 0.00 0.00 3.32
242 491 4.350346 CTGTTTTCATCACAAGCGAAACA 58.650 39.130 0.00 0.00 0.00 2.83
243 492 3.180387 GCTGTTTTCATCACAAGCGAAAC 59.820 43.478 0.00 0.00 0.00 2.78
244 493 3.181492 TGCTGTTTTCATCACAAGCGAAA 60.181 39.130 0.00 0.00 0.00 3.46
247 496 2.404265 TGCTGTTTTCATCACAAGCG 57.596 45.000 0.00 0.00 0.00 4.68
283 532 9.981460 AGAAAAGTTTTATGACTGATCCCTTAT 57.019 29.630 0.00 0.00 0.00 1.73
285 534 7.394641 GGAGAAAAGTTTTATGACTGATCCCTT 59.605 37.037 0.00 0.00 0.00 3.95
286 535 6.887002 GGAGAAAAGTTTTATGACTGATCCCT 59.113 38.462 0.00 0.00 0.00 4.20
287 536 6.887002 AGGAGAAAAGTTTTATGACTGATCCC 59.113 38.462 0.00 0.00 0.00 3.85
288 537 7.826744 AGAGGAGAAAAGTTTTATGACTGATCC 59.173 37.037 0.00 0.00 0.00 3.36
289 538 8.785329 AGAGGAGAAAAGTTTTATGACTGATC 57.215 34.615 0.00 0.00 0.00 2.92
296 545 9.678941 GGTGTTTTAGAGGAGAAAAGTTTTATG 57.321 33.333 0.00 0.00 0.00 1.90
297 546 8.857098 GGGTGTTTTAGAGGAGAAAAGTTTTAT 58.143 33.333 0.00 0.00 0.00 1.40
300 549 5.597182 GGGGTGTTTTAGAGGAGAAAAGTTT 59.403 40.000 0.00 0.00 0.00 2.66
301 550 5.103643 AGGGGTGTTTTAGAGGAGAAAAGTT 60.104 40.000 0.00 0.00 0.00 2.66
303 552 4.986783 AGGGGTGTTTTAGAGGAGAAAAG 58.013 43.478 0.00 0.00 0.00 2.27
304 553 5.382616 GAAGGGGTGTTTTAGAGGAGAAAA 58.617 41.667 0.00 0.00 0.00 2.29
319 568 4.261801 AGATTTTATGACACGAAGGGGTG 58.738 43.478 0.00 0.00 43.54 4.61
321 570 4.513442 TGAGATTTTATGACACGAAGGGG 58.487 43.478 0.00 0.00 0.00 4.79
322 571 6.314784 GTTTGAGATTTTATGACACGAAGGG 58.685 40.000 0.00 0.00 0.00 3.95
323 572 6.149474 AGGTTTGAGATTTTATGACACGAAGG 59.851 38.462 0.00 0.00 0.00 3.46
324 573 7.118390 AGAGGTTTGAGATTTTATGACACGAAG 59.882 37.037 0.00 0.00 0.00 3.79
325 574 6.934645 AGAGGTTTGAGATTTTATGACACGAA 59.065 34.615 0.00 0.00 0.00 3.85
326 575 6.464222 AGAGGTTTGAGATTTTATGACACGA 58.536 36.000 0.00 0.00 0.00 4.35
327 576 6.727824 AGAGGTTTGAGATTTTATGACACG 57.272 37.500 0.00 0.00 0.00 4.49
338 587 9.454859 CCTTATGAAGTTTTAGAGGTTTGAGAT 57.545 33.333 0.00 0.00 0.00 2.75
340 589 7.883311 TCCCTTATGAAGTTTTAGAGGTTTGAG 59.117 37.037 0.00 0.00 0.00 3.02
342 591 7.996098 TCCCTTATGAAGTTTTAGAGGTTTG 57.004 36.000 0.00 0.00 0.00 2.93
343 592 7.553044 CGATCCCTTATGAAGTTTTAGAGGTTT 59.447 37.037 0.00 0.00 0.00 3.27
345 594 6.408206 CCGATCCCTTATGAAGTTTTAGAGGT 60.408 42.308 0.00 0.00 0.00 3.85
346 595 5.992217 CCGATCCCTTATGAAGTTTTAGAGG 59.008 44.000 0.00 0.00 0.00 3.69
347 596 6.583562 ACCGATCCCTTATGAAGTTTTAGAG 58.416 40.000 0.00 0.00 0.00 2.43
349 598 6.346096 TGACCGATCCCTTATGAAGTTTTAG 58.654 40.000 0.00 0.00 0.00 1.85
350 599 6.302535 TGACCGATCCCTTATGAAGTTTTA 57.697 37.500 0.00 0.00 0.00 1.52
351 600 5.174037 TGACCGATCCCTTATGAAGTTTT 57.826 39.130 0.00 0.00 0.00 2.43
353 602 4.837093 TTGACCGATCCCTTATGAAGTT 57.163 40.909 0.00 0.00 0.00 2.66
354 603 4.469945 TCTTTGACCGATCCCTTATGAAGT 59.530 41.667 0.00 0.00 0.00 3.01
355 604 5.023533 TCTTTGACCGATCCCTTATGAAG 57.976 43.478 0.00 0.00 0.00 3.02
356 605 5.368145 CATCTTTGACCGATCCCTTATGAA 58.632 41.667 0.00 0.00 0.00 2.57
358 607 3.499918 GCATCTTTGACCGATCCCTTATG 59.500 47.826 0.00 0.00 0.00 1.90
359 608 3.392616 AGCATCTTTGACCGATCCCTTAT 59.607 43.478 0.00 0.00 0.00 1.73
360 609 2.771943 AGCATCTTTGACCGATCCCTTA 59.228 45.455 0.00 0.00 0.00 2.69
362 611 1.139853 GAGCATCTTTGACCGATCCCT 59.860 52.381 0.00 0.00 0.00 4.20
363 612 1.587547 GAGCATCTTTGACCGATCCC 58.412 55.000 0.00 0.00 0.00 3.85
379 628 8.756864 CACGAAAAAGGTCTATTATCTAAGAGC 58.243 37.037 0.00 0.00 39.88 4.09
380 629 8.756864 GCACGAAAAAGGTCTATTATCTAAGAG 58.243 37.037 0.00 0.00 0.00 2.85
381 630 8.475639 AGCACGAAAAAGGTCTATTATCTAAGA 58.524 33.333 0.00 0.00 0.00 2.10
382 631 8.649973 AGCACGAAAAAGGTCTATTATCTAAG 57.350 34.615 0.00 0.00 0.00 2.18
383 632 9.095065 GAAGCACGAAAAAGGTCTATTATCTAA 57.905 33.333 0.00 0.00 0.00 2.10
384 633 7.709613 GGAAGCACGAAAAAGGTCTATTATCTA 59.290 37.037 0.00 0.00 0.00 1.98
385 634 6.539103 GGAAGCACGAAAAAGGTCTATTATCT 59.461 38.462 0.00 0.00 0.00 1.98
386 635 6.509677 CGGAAGCACGAAAAAGGTCTATTATC 60.510 42.308 0.00 0.00 35.47 1.75
388 637 4.628333 CGGAAGCACGAAAAAGGTCTATTA 59.372 41.667 0.00 0.00 35.47 0.98
389 638 3.435671 CGGAAGCACGAAAAAGGTCTATT 59.564 43.478 0.00 0.00 35.47 1.73
391 640 2.409975 CGGAAGCACGAAAAAGGTCTA 58.590 47.619 0.00 0.00 35.47 2.59
392 641 1.226746 CGGAAGCACGAAAAAGGTCT 58.773 50.000 0.00 0.00 35.47 3.85
413 1363 4.685169 AACTATGCCATTTTCGTCACAG 57.315 40.909 0.00 0.00 0.00 3.66
416 1366 7.877003 TCTTTTTAACTATGCCATTTTCGTCA 58.123 30.769 0.00 0.00 0.00 4.35
419 1369 8.964420 TCTTCTTTTTAACTATGCCATTTTCG 57.036 30.769 0.00 0.00 0.00 3.46
425 1375 7.817418 AGTGTTCTTCTTTTTAACTATGCCA 57.183 32.000 0.00 0.00 0.00 4.92
463 1413 7.568349 TGGTGTCATTTCTAGATAAGCATTCT 58.432 34.615 0.00 0.00 0.00 2.40
482 1432 0.729116 CAATCCGTCATGCTGGTGTC 59.271 55.000 3.38 0.00 0.00 3.67
494 1444 3.367292 GCATTCCACAAATGACAATCCGT 60.367 43.478 2.07 0.00 46.54 4.69
520 1509 5.267776 CGGAACTCGTAGCAAAAAGAAAAA 58.732 37.500 0.00 0.00 0.00 1.94
521 1510 4.839796 CGGAACTCGTAGCAAAAAGAAAA 58.160 39.130 0.00 0.00 0.00 2.29
522 1511 4.461992 CGGAACTCGTAGCAAAAAGAAA 57.538 40.909 0.00 0.00 0.00 2.52
535 1524 2.348666 GGAATGACATTCACGGAACTCG 59.651 50.000 25.59 0.00 41.03 4.18
536 1525 3.334691 TGGAATGACATTCACGGAACTC 58.665 45.455 25.59 9.45 41.03 3.01
537 1526 3.417069 TGGAATGACATTCACGGAACT 57.583 42.857 25.59 0.00 41.03 3.01
653 1651 1.414181 CCAGCACAGATACCCCTACTG 59.586 57.143 0.00 0.00 37.62 2.74
654 1652 1.794714 CCAGCACAGATACCCCTACT 58.205 55.000 0.00 0.00 0.00 2.57
656 1654 1.399744 CGCCAGCACAGATACCCCTA 61.400 60.000 0.00 0.00 0.00 3.53
662 1660 2.052782 TCTACTCGCCAGCACAGATA 57.947 50.000 0.00 0.00 0.00 1.98
672 1670 2.492484 TGAAAGTCCTCTTCTACTCGCC 59.508 50.000 0.00 0.00 32.90 5.54
678 1676 5.952347 TGTAGCTGATGAAAGTCCTCTTCTA 59.048 40.000 0.00 0.00 32.90 2.10
693 1691 1.486726 GGTTGTAGGCCTGTAGCTGAT 59.513 52.381 17.99 0.00 43.05 2.90
694 1692 0.902531 GGTTGTAGGCCTGTAGCTGA 59.097 55.000 17.99 0.00 43.05 4.26
713 1711 1.701847 CTGATGGGTTCTATCTGGGGG 59.298 57.143 0.00 0.00 0.00 5.40
745 1743 5.975988 TTATCTAGGCCAGTCATTTCCTT 57.024 39.130 5.01 0.00 0.00 3.36
748 1746 6.429385 CCTTGATTATCTAGGCCAGTCATTTC 59.571 42.308 5.01 0.00 32.99 2.17
823 1822 2.032549 CAGCAGGAGAAAACGTGAACAG 60.033 50.000 0.00 0.00 0.00 3.16
824 1823 1.939934 CAGCAGGAGAAAACGTGAACA 59.060 47.619 0.00 0.00 0.00 3.18
825 1824 1.264288 CCAGCAGGAGAAAACGTGAAC 59.736 52.381 0.00 0.00 36.89 3.18
826 1825 1.593196 CCAGCAGGAGAAAACGTGAA 58.407 50.000 0.00 0.00 36.89 3.18
827 1826 0.884704 GCCAGCAGGAGAAAACGTGA 60.885 55.000 0.00 0.00 36.89 4.35
828 1827 0.886490 AGCCAGCAGGAGAAAACGTG 60.886 55.000 0.00 0.00 36.89 4.49
829 1828 0.886490 CAGCCAGCAGGAGAAAACGT 60.886 55.000 0.00 0.00 36.89 3.99
830 1829 1.871772 CAGCCAGCAGGAGAAAACG 59.128 57.895 0.00 0.00 36.89 3.60
831 1830 1.583477 GCAGCCAGCAGGAGAAAAC 59.417 57.895 0.00 0.00 44.79 2.43
832 1831 4.085876 GCAGCCAGCAGGAGAAAA 57.914 55.556 0.00 0.00 44.79 2.29
860 1859 4.401022 TGGGCATTTATAAGCTGATGAGG 58.599 43.478 0.00 0.00 0.00 3.86
861 1860 6.585695 ATTGGGCATTTATAAGCTGATGAG 57.414 37.500 0.00 0.00 0.00 2.90
864 1919 7.439056 CGAAAAATTGGGCATTTATAAGCTGAT 59.561 33.333 0.00 0.00 33.60 2.90
870 1925 6.578023 CCTCCGAAAAATTGGGCATTTATAA 58.422 36.000 0.00 0.00 33.60 0.98
920 1975 5.441500 GGTCTATGGAGAGATGGATCGATA 58.558 45.833 0.00 0.00 30.20 2.92
938 1993 1.462432 TGGGTTGCAGTGGGGTCTA 60.462 57.895 0.00 0.00 0.00 2.59
943 2005 2.987547 CAGCTGGGTTGCAGTGGG 60.988 66.667 5.57 0.00 34.99 4.61
975 2048 2.750637 TCGTGGAGTCTCCGGAGC 60.751 66.667 27.39 20.68 40.17 4.70
1101 2174 1.979155 CCTCGAGTGGAGCCTGTGA 60.979 63.158 12.31 0.00 41.71 3.58
1132 2205 1.192146 TTGGGGACGAGGTTCCTGAG 61.192 60.000 0.00 0.00 35.76 3.35
1155 2228 2.183555 GGACGGTGGATCACGACC 59.816 66.667 10.10 9.36 40.68 4.79
1162 2235 1.381872 CTGGAGGAGGACGGTGGAT 60.382 63.158 0.00 0.00 0.00 3.41
1217 2292 1.006832 GGTACCGCTGCACTTACATG 58.993 55.000 0.00 0.00 0.00 3.21
1267 2342 4.781934 ACTTCCTTTAGTTCAGTTGCACT 58.218 39.130 0.00 0.00 0.00 4.40
1281 2356 4.036380 CCTGCGTTCAGTTTAACTTCCTTT 59.964 41.667 0.00 0.00 38.66 3.11
1310 2385 1.218047 CAACCCGGCGATCTTCTCA 59.782 57.895 9.30 0.00 0.00 3.27
1345 2441 2.741985 CAGACGACGGCAATGGCA 60.742 61.111 2.19 0.00 43.71 4.92
1753 2849 4.988598 AGCTTGTCCCACGCCACG 62.989 66.667 0.00 0.00 28.47 4.94
1868 2967 8.791327 ACACAATATACTCAACAATCATGTCA 57.209 30.769 0.00 0.00 39.40 3.58
1880 2979 9.887406 CACATATACACGTACACAATATACTCA 57.113 33.333 0.00 0.00 0.00 3.41
1881 2980 9.888878 ACACATATACACGTACACAATATACTC 57.111 33.333 0.00 0.00 0.00 2.59
1882 2981 9.673454 CACACATATACACGTACACAATATACT 57.327 33.333 0.00 0.00 0.00 2.12
1883 2982 9.454585 ACACACATATACACGTACACAATATAC 57.545 33.333 0.00 0.00 0.00 1.47
1885 2984 9.673454 CTACACACATATACACGTACACAATAT 57.327 33.333 0.00 0.00 0.00 1.28
1886 2985 8.130469 CCTACACACATATACACGTACACAATA 58.870 37.037 0.00 0.00 0.00 1.90
1887 2986 6.976349 CCTACACACATATACACGTACACAAT 59.024 38.462 0.00 0.00 0.00 2.71
1888 2987 6.324042 CCTACACACATATACACGTACACAA 58.676 40.000 0.00 0.00 0.00 3.33
1889 2988 5.163632 CCCTACACACATATACACGTACACA 60.164 44.000 0.00 0.00 0.00 3.72
1890 2989 5.276270 CCCTACACACATATACACGTACAC 58.724 45.833 0.00 0.00 0.00 2.90
1891 2990 4.202040 GCCCTACACACATATACACGTACA 60.202 45.833 0.00 0.00 0.00 2.90
1892 2991 4.293415 GCCCTACACACATATACACGTAC 58.707 47.826 0.00 0.00 0.00 3.67
1893 2992 3.318839 GGCCCTACACACATATACACGTA 59.681 47.826 0.00 0.00 0.00 3.57
1894 2993 2.101917 GGCCCTACACACATATACACGT 59.898 50.000 0.00 0.00 0.00 4.49
1895 2994 2.547218 GGGCCCTACACACATATACACG 60.547 54.545 17.04 0.00 0.00 4.49
1896 2995 2.436542 TGGGCCCTACACACATATACAC 59.563 50.000 25.70 0.00 0.00 2.90
1897 2996 2.436542 GTGGGCCCTACACACATATACA 59.563 50.000 25.70 0.00 38.67 2.29
1898 2997 2.224450 GGTGGGCCCTACACACATATAC 60.224 54.545 25.70 7.71 40.54 1.47
1899 2998 2.051692 GGTGGGCCCTACACACATATA 58.948 52.381 25.70 0.00 40.54 0.86
1900 2999 0.843984 GGTGGGCCCTACACACATAT 59.156 55.000 25.70 0.00 40.54 1.78
1901 3000 0.252974 AGGTGGGCCCTACACACATA 60.253 55.000 25.70 0.00 43.87 2.29
1902 3001 1.541368 AGGTGGGCCCTACACACAT 60.541 57.895 25.70 6.99 43.87 3.21
1903 3002 2.122144 AGGTGGGCCCTACACACA 60.122 61.111 25.70 0.00 43.87 3.72
1904 3003 2.669240 GAGGTGGGCCCTACACAC 59.331 66.667 25.70 12.48 46.51 3.82
1905 3004 2.609610 GGAGGTGGGCCCTACACA 60.610 66.667 25.70 0.00 46.51 3.72
1908 3007 1.498176 AAACAGGAGGTGGGCCCTAC 61.498 60.000 25.70 18.94 46.51 3.18
1909 3008 1.151677 AAACAGGAGGTGGGCCCTA 60.152 57.895 25.70 6.58 46.51 3.53
1911 3010 2.035783 GAAACAGGAGGTGGGCCC 59.964 66.667 17.59 17.59 34.57 5.80
1912 3011 0.178961 AAAGAAACAGGAGGTGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
1913 3012 0.961753 CAAAGAAACAGGAGGTGGGC 59.038 55.000 0.00 0.00 0.00 5.36
1914 3013 2.364972 ACAAAGAAACAGGAGGTGGG 57.635 50.000 0.00 0.00 0.00 4.61
1915 3014 5.805728 ACTATACAAAGAAACAGGAGGTGG 58.194 41.667 0.00 0.00 0.00 4.61
1926 3025 9.169592 GCCACAACCTTATAACTATACAAAGAA 57.830 33.333 0.00 0.00 0.00 2.52
1927 3026 8.545472 AGCCACAACCTTATAACTATACAAAGA 58.455 33.333 0.00 0.00 0.00 2.52
1928 3027 8.732746 AGCCACAACCTTATAACTATACAAAG 57.267 34.615 0.00 0.00 0.00 2.77
1929 3028 8.322828 TGAGCCACAACCTTATAACTATACAAA 58.677 33.333 0.00 0.00 0.00 2.83
1930 3029 7.767198 GTGAGCCACAACCTTATAACTATACAA 59.233 37.037 1.01 0.00 34.08 2.41
1931 3030 7.270047 GTGAGCCACAACCTTATAACTATACA 58.730 38.462 1.01 0.00 34.08 2.29
1932 3031 6.704937 GGTGAGCCACAACCTTATAACTATAC 59.295 42.308 7.49 0.00 35.86 1.47
1933 3032 6.614087 AGGTGAGCCACAACCTTATAACTATA 59.386 38.462 7.49 0.00 36.78 1.31
1934 3033 5.428783 AGGTGAGCCACAACCTTATAACTAT 59.571 40.000 7.49 0.00 36.78 2.12
1935 3034 4.781087 AGGTGAGCCACAACCTTATAACTA 59.219 41.667 7.49 0.00 36.78 2.24
1936 3035 3.587506 AGGTGAGCCACAACCTTATAACT 59.412 43.478 7.49 0.00 36.78 2.24
1937 3036 3.939592 GAGGTGAGCCACAACCTTATAAC 59.060 47.826 7.49 0.00 36.78 1.89
1938 3037 3.844211 AGAGGTGAGCCACAACCTTATAA 59.156 43.478 7.49 0.00 36.78 0.98
1939 3038 3.197766 CAGAGGTGAGCCACAACCTTATA 59.802 47.826 7.49 0.00 36.78 0.98
1940 3039 2.026822 CAGAGGTGAGCCACAACCTTAT 60.027 50.000 7.49 0.00 36.78 1.73
1941 3040 1.347707 CAGAGGTGAGCCACAACCTTA 59.652 52.381 7.49 0.00 36.78 2.69
1942 3041 0.109342 CAGAGGTGAGCCACAACCTT 59.891 55.000 7.49 0.00 36.78 3.50
1943 3042 1.056700 ACAGAGGTGAGCCACAACCT 61.057 55.000 7.49 2.73 36.78 3.50
1944 3043 0.685097 TACAGAGGTGAGCCACAACC 59.315 55.000 7.49 0.00 36.78 3.77
1945 3044 1.344763 AGTACAGAGGTGAGCCACAAC 59.655 52.381 7.49 0.00 35.86 3.32
1946 3045 1.717032 AGTACAGAGGTGAGCCACAA 58.283 50.000 7.49 0.00 35.86 3.33
1947 3046 1.717032 AAGTACAGAGGTGAGCCACA 58.283 50.000 7.49 0.00 35.86 4.17
1948 3047 5.793030 ATATAAGTACAGAGGTGAGCCAC 57.207 43.478 0.00 0.00 37.19 5.01
1949 3048 7.336176 CGTATATATAAGTACAGAGGTGAGCCA 59.664 40.741 0.00 0.00 37.19 4.75
1950 3049 7.336427 ACGTATATATAAGTACAGAGGTGAGCC 59.664 40.741 9.27 0.00 0.00 4.70
1951 3050 8.176365 CACGTATATATAAGTACAGAGGTGAGC 58.824 40.741 10.46 0.00 0.00 4.26
1952 3051 8.176365 GCACGTATATATAAGTACAGAGGTGAG 58.824 40.741 10.46 0.00 0.00 3.51
1953 3052 7.120285 GGCACGTATATATAAGTACAGAGGTGA 59.880 40.741 10.46 0.00 0.00 4.02
1954 3053 7.120873 AGGCACGTATATATAAGTACAGAGGTG 59.879 40.741 10.46 4.25 0.00 4.00
1955 3054 7.120873 CAGGCACGTATATATAAGTACAGAGGT 59.879 40.741 10.46 0.00 0.00 3.85
1956 3055 7.415318 CCAGGCACGTATATATAAGTACAGAGG 60.415 44.444 10.46 6.57 0.00 3.69
1957 3056 7.120873 ACCAGGCACGTATATATAAGTACAGAG 59.879 40.741 10.46 4.21 0.00 3.35
1958 3057 6.944290 ACCAGGCACGTATATATAAGTACAGA 59.056 38.462 10.46 0.00 0.00 3.41
1959 3058 7.027760 CACCAGGCACGTATATATAAGTACAG 58.972 42.308 10.46 5.10 0.00 2.74
1960 3059 6.570957 GCACCAGGCACGTATATATAAGTACA 60.571 42.308 10.46 0.00 43.97 2.90
1961 3060 5.803967 GCACCAGGCACGTATATATAAGTAC 59.196 44.000 10.46 5.88 43.97 2.73
1962 3061 5.957798 GCACCAGGCACGTATATATAAGTA 58.042 41.667 10.46 0.00 43.97 2.24
1963 3062 4.817517 GCACCAGGCACGTATATATAAGT 58.182 43.478 5.59 5.59 43.97 2.24
1977 3076 0.463654 TATTGATCGGTGCACCAGGC 60.464 55.000 34.16 21.79 45.13 4.85
1978 3077 1.299541 GTATTGATCGGTGCACCAGG 58.700 55.000 34.16 19.77 35.14 4.45
1979 3078 2.022764 TGTATTGATCGGTGCACCAG 57.977 50.000 34.16 25.45 35.14 4.00
1980 3079 2.560504 GATGTATTGATCGGTGCACCA 58.439 47.619 34.16 21.66 35.14 4.17
1981 3080 1.526887 CGATGTATTGATCGGTGCACC 59.473 52.381 26.78 26.78 41.29 5.01
1982 3081 2.469826 TCGATGTATTGATCGGTGCAC 58.530 47.619 8.80 8.80 44.41 4.57
1983 3082 2.360801 TCTCGATGTATTGATCGGTGCA 59.639 45.455 0.00 0.00 44.41 4.57
1984 3083 3.013276 TCTCGATGTATTGATCGGTGC 57.987 47.619 0.00 0.00 44.41 5.01
1985 3084 4.143242 GCAATCTCGATGTATTGATCGGTG 60.143 45.833 15.55 0.00 44.41 4.94
1986 3085 3.990469 GCAATCTCGATGTATTGATCGGT 59.010 43.478 15.55 0.00 44.41 4.69
1987 3086 3.989817 TGCAATCTCGATGTATTGATCGG 59.010 43.478 15.55 0.00 44.41 4.18
1988 3087 4.445385 TGTGCAATCTCGATGTATTGATCG 59.555 41.667 15.55 0.00 45.43 3.69
1989 3088 5.614231 GCTGTGCAATCTCGATGTATTGATC 60.614 44.000 15.55 9.54 35.53 2.92
1990 3089 4.212847 GCTGTGCAATCTCGATGTATTGAT 59.787 41.667 15.55 0.00 35.53 2.57
1991 3090 3.557185 GCTGTGCAATCTCGATGTATTGA 59.443 43.478 15.55 0.00 35.53 2.57
1992 3091 3.303593 GGCTGTGCAATCTCGATGTATTG 60.304 47.826 9.68 9.68 36.40 1.90
1993 3092 2.874701 GGCTGTGCAATCTCGATGTATT 59.125 45.455 0.00 0.00 0.00 1.89
1994 3093 2.487934 GGCTGTGCAATCTCGATGTAT 58.512 47.619 0.00 0.00 0.00 2.29
1995 3094 1.473257 GGGCTGTGCAATCTCGATGTA 60.473 52.381 0.00 0.00 0.00 2.29
1996 3095 0.745845 GGGCTGTGCAATCTCGATGT 60.746 55.000 0.00 0.00 0.00 3.06
1997 3096 0.745486 TGGGCTGTGCAATCTCGATG 60.745 55.000 0.00 0.00 0.00 3.84
1998 3097 0.182061 ATGGGCTGTGCAATCTCGAT 59.818 50.000 0.00 0.00 0.00 3.59
1999 3098 0.829990 TATGGGCTGTGCAATCTCGA 59.170 50.000 0.00 0.00 0.00 4.04
2000 3099 1.331756 GTTATGGGCTGTGCAATCTCG 59.668 52.381 0.00 0.00 0.00 4.04
2001 3100 2.648059 AGTTATGGGCTGTGCAATCTC 58.352 47.619 0.00 0.00 0.00 2.75
2002 3101 2.756760 CAAGTTATGGGCTGTGCAATCT 59.243 45.455 0.00 0.00 0.00 2.40
2003 3102 2.493278 ACAAGTTATGGGCTGTGCAATC 59.507 45.455 0.00 0.00 0.00 2.67
2004 3103 2.493278 GACAAGTTATGGGCTGTGCAAT 59.507 45.455 0.00 0.00 0.00 3.56
2005 3104 1.885887 GACAAGTTATGGGCTGTGCAA 59.114 47.619 0.00 0.00 0.00 4.08
2006 3105 1.533625 GACAAGTTATGGGCTGTGCA 58.466 50.000 0.00 0.00 0.00 4.57
2007 3106 0.811281 GGACAAGTTATGGGCTGTGC 59.189 55.000 0.00 0.00 0.00 4.57
2008 3107 2.496899 AGGACAAGTTATGGGCTGTG 57.503 50.000 0.00 0.00 0.00 3.66
2009 3108 3.525800 AAAGGACAAGTTATGGGCTGT 57.474 42.857 0.00 0.00 0.00 4.40
2010 3109 5.975693 TTAAAAGGACAAGTTATGGGCTG 57.024 39.130 0.00 0.00 0.00 4.85
2011 3110 6.723977 TCATTTAAAAGGACAAGTTATGGGCT 59.276 34.615 0.00 0.00 0.00 5.19
2012 3111 6.930731 TCATTTAAAAGGACAAGTTATGGGC 58.069 36.000 0.00 0.00 0.00 5.36
2023 3122 9.617975 GCTGCAATAGATATCATTTAAAAGGAC 57.382 33.333 5.32 0.00 0.00 3.85
2024 3123 9.353431 TGCTGCAATAGATATCATTTAAAAGGA 57.647 29.630 0.00 0.00 0.00 3.36
2025 3124 9.403110 GTGCTGCAATAGATATCATTTAAAAGG 57.597 33.333 2.77 0.00 0.00 3.11
2026 3125 9.110617 CGTGCTGCAATAGATATCATTTAAAAG 57.889 33.333 2.77 0.00 0.00 2.27
2027 3126 8.835439 TCGTGCTGCAATAGATATCATTTAAAA 58.165 29.630 2.77 0.00 0.00 1.52
2028 3127 8.376889 TCGTGCTGCAATAGATATCATTTAAA 57.623 30.769 2.77 0.00 0.00 1.52
2029 3128 7.961325 TCGTGCTGCAATAGATATCATTTAA 57.039 32.000 2.77 0.00 0.00 1.52
2030 3129 7.278646 GGATCGTGCTGCAATAGATATCATTTA 59.721 37.037 2.77 0.00 0.00 1.40
2031 3130 6.093219 GGATCGTGCTGCAATAGATATCATTT 59.907 38.462 2.77 0.00 0.00 2.32
2032 3131 5.583854 GGATCGTGCTGCAATAGATATCATT 59.416 40.000 2.77 0.43 0.00 2.57
2033 3132 5.105023 AGGATCGTGCTGCAATAGATATCAT 60.105 40.000 2.77 0.00 0.00 2.45
2034 3133 4.221482 AGGATCGTGCTGCAATAGATATCA 59.779 41.667 2.77 0.00 0.00 2.15
2035 3134 4.753233 AGGATCGTGCTGCAATAGATATC 58.247 43.478 2.77 6.37 0.00 1.63
2036 3135 4.815533 AGGATCGTGCTGCAATAGATAT 57.184 40.909 2.77 0.34 0.00 1.63
2037 3136 5.470368 GTTAGGATCGTGCTGCAATAGATA 58.530 41.667 2.77 0.00 0.00 1.98
2038 3137 4.310769 GTTAGGATCGTGCTGCAATAGAT 58.689 43.478 2.77 9.99 0.00 1.98
2039 3138 3.492656 GGTTAGGATCGTGCTGCAATAGA 60.493 47.826 2.77 4.98 0.00 1.98
2040 3139 2.802816 GGTTAGGATCGTGCTGCAATAG 59.197 50.000 2.77 0.00 0.00 1.73
2041 3140 2.484770 GGGTTAGGATCGTGCTGCAATA 60.485 50.000 2.77 0.00 0.00 1.90
2042 3141 1.668419 GGTTAGGATCGTGCTGCAAT 58.332 50.000 2.77 0.00 0.00 3.56
2043 3142 0.392461 GGGTTAGGATCGTGCTGCAA 60.392 55.000 2.77 0.00 0.00 4.08
2044 3143 1.220749 GGGTTAGGATCGTGCTGCA 59.779 57.895 0.00 0.00 0.00 4.41
2045 3144 4.126524 GGGTTAGGATCGTGCTGC 57.873 61.111 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.