Multiple sequence alignment - TraesCS6B01G122900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G122900 chr6B 100.000 2619 0 0 1 2619 117842774 117845392 0.000000e+00 4837
1 TraesCS6B01G122900 chr6A 89.141 2201 147 50 438 2619 61425320 61427447 0.000000e+00 2656
2 TraesCS6B01G122900 chr6A 94.444 432 21 2 1 429 61424835 61425266 0.000000e+00 662
3 TraesCS6B01G122900 chr6A 84.868 456 48 17 1 441 61421123 61421572 8.600000e-120 440
4 TraesCS6B01G122900 chr6A 88.013 317 26 7 1 309 61417487 61417799 5.330000e-97 364
5 TraesCS6B01G122900 chr6D 88.304 2146 126 43 499 2619 53674525 53672480 0.000000e+00 2457
6 TraesCS6B01G122900 chr6D 95.984 249 10 0 1 249 53682599 53682351 3.140000e-109 405
7 TraesCS6B01G122900 chr6D 92.823 209 10 4 103 306 53677836 53677628 5.480000e-77 298
8 TraesCS6B01G122900 chr6D 94.030 134 8 0 308 441 53674740 53674607 1.230000e-48 204
9 TraesCS6B01G122900 chrUn 88.255 298 23 2 7 304 77432256 77431971 1.930000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G122900 chr6B 117842774 117845392 2618 False 4837.000000 4837 100.0000 1 2619 1 chr6B.!!$F1 2618
1 TraesCS6B01G122900 chr6A 61417487 61427447 9960 False 1030.500000 2656 89.1165 1 2619 4 chr6A.!!$F1 2618
2 TraesCS6B01G122900 chr6D 53672480 53677836 5356 True 986.333333 2457 91.7190 103 2619 3 chr6D.!!$R2 2516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.035439 AACCAACCAGGCTATCACCG 60.035 55.0 0.0 0.0 43.14 4.94 F
791 9508 0.044855 ACCCCTACCAGAGCCTTCAT 59.955 55.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 9958 0.041833 CACCTCCTCCTCCTCTTCCA 59.958 60.0 0.00 0.0 0.0 3.53 R
2356 11109 0.036388 ACACGGCGTTCATCCATTCT 60.036 50.0 11.19 0.0 0.0 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.020218 TGACTGCAAAAGCAGGTCTAGTAT 60.020 41.667 20.12 0.00 41.67 2.12
37 38 8.212259 AGCAGGTCTAGTATATGAATCCAAAT 57.788 34.615 0.00 0.00 0.00 2.32
54 55 1.552578 AATTAAGCCCGGTCCAAACC 58.447 50.000 0.00 0.00 42.66 3.27
71 72 3.753294 AACCTGACGACTGAAACATCT 57.247 42.857 0.00 0.00 0.00 2.90
80 81 2.548057 GACTGAAACATCTTTGCGTCCA 59.452 45.455 0.00 0.00 0.00 4.02
84 85 2.352503 AACATCTTTGCGTCCAATGC 57.647 45.000 0.00 0.00 0.00 3.56
86 87 0.447406 CATCTTTGCGTCCAATGCGA 59.553 50.000 0.00 0.00 31.36 5.10
138 139 1.517257 CCACCGACTCGACTGATGC 60.517 63.158 0.00 0.00 0.00 3.91
171 172 0.035439 AACCAACCAGGCTATCACCG 60.035 55.000 0.00 0.00 43.14 4.94
262 265 7.416731 ACTAAGGACTACCAGGTGACTATTTA 58.583 38.462 0.76 0.00 40.21 1.40
264 267 7.563724 AAGGACTACCAGGTGACTATTTAAA 57.436 36.000 0.76 0.00 40.21 1.52
287 8945 1.459450 AAAACTGAACCGTGCACACT 58.541 45.000 18.64 0.00 0.00 3.55
410 9068 3.392882 GCAAAGGTTTCAACTCAATGGG 58.607 45.455 0.00 0.00 0.00 4.00
445 9148 0.798771 GTGTCTACGGAAGCAGCTCG 60.799 60.000 0.00 0.00 0.00 5.03
451 9154 2.586792 GGAAGCAGCTCGGTGGAT 59.413 61.111 0.00 0.00 0.00 3.41
563 9266 0.546122 TCAGGTGTTGGAGTGCTGTT 59.454 50.000 0.00 0.00 0.00 3.16
574 9277 2.166821 AGTGCTGTTGCTCTCTTCTG 57.833 50.000 0.00 0.00 38.48 3.02
605 9308 2.985139 GGTACACAGTTTGCGTACTCTC 59.015 50.000 7.17 0.00 36.45 3.20
617 9320 5.412526 TGCGTACTCTCGAAAACAAAAAT 57.587 34.783 0.00 0.00 0.00 1.82
625 9328 5.040635 TCTCGAAAACAAAAATTCAGTGCC 58.959 37.500 0.00 0.00 0.00 5.01
675 9381 9.631257 AATTATCACCACATGACTGATAAATCA 57.369 29.630 19.17 0.00 41.24 2.57
709 9417 2.080336 ATTACCCCCATCCCCATGCG 62.080 60.000 0.00 0.00 0.00 4.73
734 9442 6.171921 CAGTCAATCAGAAAGAGTCCAAGAT 58.828 40.000 0.00 0.00 0.00 2.40
782 9499 3.411517 CCCAGCCACCCCTACCAG 61.412 72.222 0.00 0.00 0.00 4.00
791 9508 0.044855 ACCCCTACCAGAGCCTTCAT 59.955 55.000 0.00 0.00 0.00 2.57
806 9523 0.687757 TTCATCCTCCCCTGTCTCCG 60.688 60.000 0.00 0.00 0.00 4.63
844 9564 1.604604 CCCTCCTCGCTTTCACAAAA 58.395 50.000 0.00 0.00 0.00 2.44
853 9573 2.001076 CTTTCACAAAAGCCCTCCCT 57.999 50.000 0.00 0.00 35.79 4.20
910 9630 6.890979 AGCTTTCTTCTGTTGCTATTTCTT 57.109 33.333 0.00 0.00 31.71 2.52
991 9711 0.678048 AAGCGAGCCAGGTCCATTTC 60.678 55.000 0.00 0.00 0.00 2.17
1219 9948 4.748798 AGGCAGGGGAGGTGGAGG 62.749 72.222 0.00 0.00 0.00 4.30
1229 9958 1.553651 GGAGGTGGAGGAGAAGGAAGT 60.554 57.143 0.00 0.00 0.00 3.01
1234 9963 2.027653 GTGGAGGAGAAGGAAGTGGAAG 60.028 54.545 0.00 0.00 0.00 3.46
1236 9965 2.499693 GGAGGAGAAGGAAGTGGAAGAG 59.500 54.545 0.00 0.00 0.00 2.85
1242 9971 2.246091 AGGAAGTGGAAGAGGAGGAG 57.754 55.000 0.00 0.00 0.00 3.69
1509 10244 1.469251 GCGAGCGATCAAGTCCAGTTA 60.469 52.381 0.00 0.00 0.00 2.24
1510 10245 2.876091 CGAGCGATCAAGTCCAGTTAA 58.124 47.619 0.00 0.00 0.00 2.01
1513 10248 4.201628 CGAGCGATCAAGTCCAGTTAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
1514 10249 4.894784 AGCGATCAAGTCCAGTTAAAAGA 58.105 39.130 0.00 0.00 0.00 2.52
1515 10250 4.691216 AGCGATCAAGTCCAGTTAAAAGAC 59.309 41.667 0.00 0.00 0.00 3.01
1516 10251 4.451096 GCGATCAAGTCCAGTTAAAAGACA 59.549 41.667 0.00 0.00 32.82 3.41
1651 10391 2.943690 TCGAGGAGTGCATCTGTACTAC 59.056 50.000 2.70 2.70 41.05 2.73
1692 10432 4.352009 TGGTTATTTGCTGGATGGTCAAT 58.648 39.130 0.00 0.00 0.00 2.57
1693 10433 4.402155 TGGTTATTTGCTGGATGGTCAATC 59.598 41.667 0.00 0.00 34.19 2.67
1694 10434 4.646492 GGTTATTTGCTGGATGGTCAATCT 59.354 41.667 0.00 0.00 35.43 2.40
1695 10435 5.450965 GGTTATTTGCTGGATGGTCAATCTG 60.451 44.000 0.00 0.00 35.43 2.90
1696 10436 1.466856 TTGCTGGATGGTCAATCTGC 58.533 50.000 0.00 0.00 35.43 4.26
1697 10437 0.622136 TGCTGGATGGTCAATCTGCT 59.378 50.000 7.09 0.00 36.43 4.24
1703 10445 4.661222 TGGATGGTCAATCTGCTTTTGTA 58.339 39.130 0.00 0.00 35.43 2.41
1740 10482 1.076677 TCTCGTTAGGAGGGAAGTGGT 59.923 52.381 1.97 0.00 43.34 4.16
1742 10484 1.897802 TCGTTAGGAGGGAAGTGGTTC 59.102 52.381 0.00 0.00 0.00 3.62
1745 10487 3.512724 CGTTAGGAGGGAAGTGGTTCTTA 59.487 47.826 0.00 0.00 36.40 2.10
1746 10488 4.381718 CGTTAGGAGGGAAGTGGTTCTTAG 60.382 50.000 0.00 0.00 36.40 2.18
1747 10489 3.277416 AGGAGGGAAGTGGTTCTTAGT 57.723 47.619 0.00 0.00 36.40 2.24
1748 10490 3.599348 AGGAGGGAAGTGGTTCTTAGTT 58.401 45.455 0.00 0.00 36.40 2.24
1749 10491 3.583526 AGGAGGGAAGTGGTTCTTAGTTC 59.416 47.826 0.00 0.00 36.40 3.01
1750 10492 3.583526 GGAGGGAAGTGGTTCTTAGTTCT 59.416 47.826 0.00 0.00 36.40 3.01
1751 10493 4.041815 GGAGGGAAGTGGTTCTTAGTTCTT 59.958 45.833 0.00 0.00 36.40 2.52
1752 10494 5.247792 GGAGGGAAGTGGTTCTTAGTTCTTA 59.752 44.000 0.00 0.00 36.40 2.10
1826 10570 7.706179 TGTGAAATTTGTGAGAGAAAATGGAAC 59.294 33.333 0.00 0.00 0.00 3.62
1853 10597 6.101997 GCCCACATCTTTATTTTTCTCTTGG 58.898 40.000 0.00 0.00 0.00 3.61
1854 10598 6.071391 GCCCACATCTTTATTTTTCTCTTGGA 60.071 38.462 0.00 0.00 0.00 3.53
1855 10599 7.315890 CCCACATCTTTATTTTTCTCTTGGAC 58.684 38.462 0.00 0.00 0.00 4.02
1856 10600 7.039784 CCCACATCTTTATTTTTCTCTTGGACA 60.040 37.037 0.00 0.00 0.00 4.02
1857 10601 8.025445 CCACATCTTTATTTTTCTCTTGGACAG 58.975 37.037 0.00 0.00 0.00 3.51
1858 10602 8.571336 CACATCTTTATTTTTCTCTTGGACAGT 58.429 33.333 0.00 0.00 0.00 3.55
1859 10603 9.793259 ACATCTTTATTTTTCTCTTGGACAGTA 57.207 29.630 0.00 0.00 0.00 2.74
1969 10718 7.989416 ATTTAAACCCTGATCGTTGAACTAA 57.011 32.000 0.00 0.00 0.00 2.24
2009 10760 6.751888 GTGTTTACACTTCAGTTCAATGCTTT 59.248 34.615 5.78 0.00 43.25 3.51
2015 10766 6.712095 ACACTTCAGTTCAATGCTTTCTATGA 59.288 34.615 0.00 0.00 0.00 2.15
2077 10829 1.215423 ACTATTCCCAATCACTGCCCC 59.785 52.381 0.00 0.00 0.00 5.80
2081 10833 2.615465 CCCAATCACTGCCCCCTCA 61.615 63.158 0.00 0.00 0.00 3.86
2086 10838 1.557269 ATCACTGCCCCCTCAGTCAC 61.557 60.000 0.00 0.00 44.81 3.67
2178 10930 1.682451 TTAACCCCGGATGGAGCTCG 61.682 60.000 0.73 0.00 37.49 5.03
2214 10966 0.239879 GAAAATTCAACGCGCCTCCA 59.760 50.000 5.73 0.00 0.00 3.86
2237 10989 1.221840 CGGAGAAGATGGTGGGTGG 59.778 63.158 0.00 0.00 0.00 4.61
2356 11109 7.361713 CGATTAGCAACTTGAATCCCAAACTTA 60.362 37.037 0.00 0.00 33.76 2.24
2392 11145 0.179702 TGTTGCAATGCTTTTGGCCA 59.820 45.000 0.00 0.00 40.92 5.36
2400 11153 4.710324 CAATGCTTTTGGCCATCCATATT 58.290 39.130 6.09 2.56 43.05 1.28
2410 11163 4.715792 TGGCCATCCATATTTGTTGTGAAT 59.284 37.500 0.00 0.00 37.47 2.57
2413 11166 5.006941 GCCATCCATATTTGTTGTGAATTGC 59.993 40.000 0.00 0.00 0.00 3.56
2459 11212 1.335496 GTGTTGCCGTGTATTGTTGGT 59.665 47.619 0.00 0.00 0.00 3.67
2460 11213 2.025155 TGTTGCCGTGTATTGTTGGTT 58.975 42.857 0.00 0.00 0.00 3.67
2461 11214 3.003482 GTGTTGCCGTGTATTGTTGGTTA 59.997 43.478 0.00 0.00 0.00 2.85
2462 11215 3.630769 TGTTGCCGTGTATTGTTGGTTAA 59.369 39.130 0.00 0.00 0.00 2.01
2467 11220 7.159322 TGCCGTGTATTGTTGGTTAATTATT 57.841 32.000 0.00 0.00 0.00 1.40
2520 11273 7.994911 AGTATCCAGCAGATATCACATTTCAAA 59.005 33.333 5.32 0.00 39.66 2.69
2605 11358 5.352569 CGAGAAATGGAAGTGCATTAGAAGT 59.647 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.798882 ACCGGGCTTAATTTGGATTCATA 58.201 39.130 6.32 0.00 0.00 2.15
37 38 4.826248 GGTTTGGACCGGGCTTAA 57.174 55.556 7.57 0.00 35.91 1.85
54 55 3.662713 CGCAAAGATGTTTCAGTCGTCAG 60.663 47.826 0.00 0.00 0.00 3.51
71 72 1.063912 GATGATCGCATTGGACGCAAA 59.936 47.619 0.00 0.00 34.11 3.68
80 81 0.107214 AACACGGGGATGATCGCATT 60.107 50.000 11.71 0.00 34.11 3.56
84 85 1.520192 TGGAACACGGGGATGATCG 59.480 57.895 0.00 0.00 0.00 3.69
138 139 3.134127 GGTTTAGGGGCAGCGCAG 61.134 66.667 11.47 1.31 0.00 5.18
287 8945 5.479724 TCAATATGTGAAAAGCATCCCACAA 59.520 36.000 0.00 0.00 41.97 3.33
338 8996 1.546029 GGAACCACCAATCTTCCAAGC 59.454 52.381 0.00 0.00 38.79 4.01
433 9091 3.376935 ATCCACCGAGCTGCTTCCG 62.377 63.158 2.53 3.39 0.00 4.30
445 9148 1.177401 GGGCAAAGTTCAGATCCACC 58.823 55.000 0.00 0.00 0.00 4.61
451 9154 2.376518 AGATGAAGGGGCAAAGTTCAGA 59.623 45.455 0.00 0.00 33.83 3.27
530 9233 2.684881 ACACCTGAAAGACACAGCAAAG 59.315 45.455 0.00 0.00 34.07 2.77
534 9237 1.334869 CCAACACCTGAAAGACACAGC 59.665 52.381 0.00 0.00 34.07 4.40
563 9266 5.869579 ACCATTTCTTTACAGAAGAGAGCA 58.130 37.500 0.00 0.00 40.28 4.26
574 9277 5.623673 CGCAAACTGTGTACCATTTCTTTAC 59.376 40.000 0.00 0.00 0.00 2.01
675 9381 5.043732 TGGGGGTAATGTATCAGGTGAAAAT 60.044 40.000 0.00 0.00 0.00 1.82
709 9417 3.668447 TGGACTCTTTCTGATTGACTGC 58.332 45.455 0.00 0.00 0.00 4.40
734 9442 3.006537 GCGATTAGCTGGGGTAGATACAA 59.993 47.826 0.00 0.00 44.04 2.41
769 9477 3.798511 GGCTCTGGTAGGGGTGGC 61.799 72.222 0.00 0.00 0.00 5.01
782 9499 0.985490 ACAGGGGAGGATGAAGGCTC 60.985 60.000 0.00 0.00 0.00 4.70
791 9508 0.635009 ATAACGGAGACAGGGGAGGA 59.365 55.000 0.00 0.00 0.00 3.71
806 9523 5.416013 GGAGGGGCTGCTTGAAATATATAAC 59.584 44.000 0.00 0.00 0.00 1.89
844 9564 0.253394 AGAGGCTTTTAGGGAGGGCT 60.253 55.000 0.00 0.00 37.30 5.19
846 9566 0.840617 GGAGAGGCTTTTAGGGAGGG 59.159 60.000 0.00 0.00 0.00 4.30
853 9573 5.892348 AGAAAAATGAGGGAGAGGCTTTTA 58.108 37.500 0.00 0.00 0.00 1.52
899 9619 5.012239 AGCAATGGAGTGAAGAAATAGCAA 58.988 37.500 0.00 0.00 0.00 3.91
910 9630 2.634453 TGAGAAGACAGCAATGGAGTGA 59.366 45.455 0.00 0.00 0.00 3.41
976 9696 1.452108 CGGGAAATGGACCTGGCTC 60.452 63.158 0.00 0.00 0.00 4.70
983 9703 1.819632 ATGAGCGCGGGAAATGGAC 60.820 57.895 8.83 0.00 0.00 4.02
985 9705 2.717485 CATGAGCGCGGGAAATGG 59.283 61.111 8.83 0.00 0.00 3.16
1094 9814 3.595428 TTCTTCCTCCTCCCGCGGA 62.595 63.158 30.73 12.25 0.00 5.54
1096 9816 2.496817 CTTCTTCCTCCTCCCGCG 59.503 66.667 0.00 0.00 0.00 6.46
1124 9853 1.376424 ACTGCAATCCAGACCGCTG 60.376 57.895 0.00 0.00 44.64 5.18
1125 9854 1.376424 CACTGCAATCCAGACCGCT 60.376 57.895 0.00 0.00 44.64 5.52
1126 9855 3.044059 GCACTGCAATCCAGACCGC 62.044 63.158 0.00 0.00 44.64 5.68
1127 9856 2.401766 GGCACTGCAATCCAGACCG 61.402 63.158 2.82 0.00 44.64 4.79
1128 9857 2.401766 CGGCACTGCAATCCAGACC 61.402 63.158 2.82 0.00 44.64 3.85
1129 9858 3.044059 GCGGCACTGCAATCCAGAC 62.044 63.158 2.82 0.00 44.64 3.51
1201 9930 3.086600 CTCCACCTCCCCTGCCTC 61.087 72.222 0.00 0.00 0.00 4.70
1202 9931 4.748798 CCTCCACCTCCCCTGCCT 62.749 72.222 0.00 0.00 0.00 4.75
1203 9932 4.741239 TCCTCCACCTCCCCTGCC 62.741 72.222 0.00 0.00 0.00 4.85
1204 9933 3.086600 CTCCTCCACCTCCCCTGC 61.087 72.222 0.00 0.00 0.00 4.85
1205 9934 0.980231 CTTCTCCTCCACCTCCCCTG 60.980 65.000 0.00 0.00 0.00 4.45
1206 9935 1.394151 CTTCTCCTCCACCTCCCCT 59.606 63.158 0.00 0.00 0.00 4.79
1207 9936 1.690985 CCTTCTCCTCCACCTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
1208 9937 0.252742 TTCCTTCTCCTCCACCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
1209 9938 1.199615 CTTCCTTCTCCTCCACCTCC 58.800 60.000 0.00 0.00 0.00 4.30
1214 9943 2.158158 TCTTCCACTTCCTTCTCCTCCA 60.158 50.000 0.00 0.00 0.00 3.86
1219 9948 2.499693 CCTCCTCTTCCACTTCCTTCTC 59.500 54.545 0.00 0.00 0.00 2.87
1229 9958 0.041833 CACCTCCTCCTCCTCTTCCA 59.958 60.000 0.00 0.00 0.00 3.53
1234 9963 1.033202 GTCGTCACCTCCTCCTCCTC 61.033 65.000 0.00 0.00 0.00 3.71
1236 9965 2.408241 CGTCGTCACCTCCTCCTCC 61.408 68.421 0.00 0.00 0.00 4.30
1242 9971 4.477975 CTCGGCGTCGTCACCTCC 62.478 72.222 10.18 0.00 37.69 4.30
1371 10103 0.456628 GGAAGTACTCTGTCGCCTCC 59.543 60.000 0.00 0.00 0.00 4.30
1380 10112 2.572284 GGCACGCGGAAGTACTCT 59.428 61.111 12.47 0.00 0.00 3.24
1443 10175 3.376234 AGCATGGACGAATCATTCAGTTG 59.624 43.478 0.00 0.00 0.00 3.16
1509 10244 5.541868 TCATCTCCTCTGTCTCTTGTCTTTT 59.458 40.000 0.00 0.00 0.00 2.27
1510 10245 5.083122 TCATCTCCTCTGTCTCTTGTCTTT 58.917 41.667 0.00 0.00 0.00 2.52
1513 10248 4.037923 GGATCATCTCCTCTGTCTCTTGTC 59.962 50.000 0.00 0.00 41.29 3.18
1514 10249 3.960102 GGATCATCTCCTCTGTCTCTTGT 59.040 47.826 0.00 0.00 41.29 3.16
1515 10250 3.959449 TGGATCATCTCCTCTGTCTCTTG 59.041 47.826 0.00 0.00 45.21 3.02
1516 10251 4.262891 TGGATCATCTCCTCTGTCTCTT 57.737 45.455 0.00 0.00 45.21 2.85
1651 10391 5.255710 ACCAAGACAGATCGAATCAGTAG 57.744 43.478 0.00 0.00 0.00 2.57
1703 10445 9.319143 CCTAACGAGACATGAAAAGAAGATTAT 57.681 33.333 0.00 0.00 0.00 1.28
1740 10482 7.051623 TGCCAAAGAACAGTAAGAACTAAGAA 58.948 34.615 0.00 0.00 33.48 2.52
1742 10484 6.706270 TCTGCCAAAGAACAGTAAGAACTAAG 59.294 38.462 0.00 0.00 35.37 2.18
1745 10487 5.036117 TCTGCCAAAGAACAGTAAGAACT 57.964 39.130 0.00 0.00 35.37 3.01
1746 10488 5.948992 ATCTGCCAAAGAACAGTAAGAAC 57.051 39.130 0.00 0.00 38.79 3.01
1747 10489 6.650807 CACTATCTGCCAAAGAACAGTAAGAA 59.349 38.462 0.00 0.00 38.79 2.52
1748 10490 6.166279 CACTATCTGCCAAAGAACAGTAAGA 58.834 40.000 0.00 0.00 38.79 2.10
1749 10491 5.163814 GCACTATCTGCCAAAGAACAGTAAG 60.164 44.000 0.00 0.00 40.42 2.34
1750 10492 4.695455 GCACTATCTGCCAAAGAACAGTAA 59.305 41.667 0.00 0.00 40.42 2.24
1751 10493 4.253685 GCACTATCTGCCAAAGAACAGTA 58.746 43.478 0.00 0.00 40.42 2.74
1752 10494 3.077359 GCACTATCTGCCAAAGAACAGT 58.923 45.455 0.00 0.00 40.42 3.55
1775 10517 6.018180 AGCGAAATTCAGTCGAACTTAAAAGT 60.018 34.615 2.27 0.00 41.02 2.66
1786 10528 3.519908 TTTCACAGCGAAATTCAGTCG 57.480 42.857 0.00 0.00 38.72 4.18
1810 10552 2.095718 GGCGTGTTCCATTTTCTCTCAC 60.096 50.000 0.00 0.00 0.00 3.51
1826 10570 5.059404 AGAAAAATAAAGATGTGGGCGTG 57.941 39.130 0.00 0.00 0.00 5.34
1829 10573 6.071391 TCCAAGAGAAAAATAAAGATGTGGGC 60.071 38.462 0.00 0.00 0.00 5.36
1859 10603 9.758651 TGCGTGAAAATTATGTACTATGTAGAT 57.241 29.630 0.00 0.00 0.00 1.98
1860 10604 9.244799 CTGCGTGAAAATTATGTACTATGTAGA 57.755 33.333 0.00 0.00 0.00 2.59
1861 10605 9.031360 ACTGCGTGAAAATTATGTACTATGTAG 57.969 33.333 0.00 0.00 0.00 2.74
1862 10606 8.936070 ACTGCGTGAAAATTATGTACTATGTA 57.064 30.769 0.00 0.00 0.00 2.29
1863 10607 7.843490 ACTGCGTGAAAATTATGTACTATGT 57.157 32.000 0.00 0.00 0.00 2.29
1875 10619 8.445275 TGTCCATATTATTACTGCGTGAAAAT 57.555 30.769 0.00 0.00 0.00 1.82
2015 10766 7.549134 GGAGGTTTGTGACTTTTTGAGATTTTT 59.451 33.333 0.00 0.00 0.00 1.94
2029 10781 5.760253 CCAGATACATATGGAGGTTTGTGAC 59.240 44.000 7.80 0.00 41.61 3.67
2072 10824 2.121963 AAGGTGACTGAGGGGGCA 60.122 61.111 0.00 0.00 42.68 5.36
2077 10829 3.260380 ACAATCTGAGAAGGTGACTGAGG 59.740 47.826 0.00 0.00 42.68 3.86
2086 10838 2.093764 AGGAGCGAACAATCTGAGAAGG 60.094 50.000 0.00 0.00 0.00 3.46
2178 10930 2.048444 TTCATGCCAATGAGCTCTCC 57.952 50.000 16.19 0.00 43.64 3.71
2214 10966 0.539051 CCACCATCTTCTCCGAGCTT 59.461 55.000 0.00 0.00 0.00 3.74
2322 11075 6.621316 TTCAAGTTGCTAATCGTTTACCAA 57.379 33.333 0.00 0.00 0.00 3.67
2330 11083 4.963276 TTGGGATTCAAGTTGCTAATCG 57.037 40.909 9.83 0.00 31.70 3.34
2331 11084 6.272822 AGTTTGGGATTCAAGTTGCTAATC 57.727 37.500 8.20 8.20 36.62 1.75
2356 11109 0.036388 ACACGGCGTTCATCCATTCT 60.036 50.000 11.19 0.00 0.00 2.40
2392 11145 6.814644 CACAGCAATTCACAACAAATATGGAT 59.185 34.615 0.00 0.00 0.00 3.41
2400 11153 4.446994 TGAACACAGCAATTCACAACAA 57.553 36.364 0.00 0.00 29.89 2.83
2410 11163 3.316029 CCTTCACAAGATGAACACAGCAA 59.684 43.478 0.00 0.00 42.62 3.91
2413 11166 2.880268 TGCCTTCACAAGATGAACACAG 59.120 45.455 0.00 0.00 42.62 3.66
2459 11212 7.144661 CGAGCACCATATGGCAAAATAATTAA 58.855 34.615 22.18 0.00 39.32 1.40
2460 11213 6.676950 CGAGCACCATATGGCAAAATAATTA 58.323 36.000 22.18 0.00 39.32 1.40
2461 11214 5.531634 CGAGCACCATATGGCAAAATAATT 58.468 37.500 22.18 0.00 39.32 1.40
2462 11215 4.559300 GCGAGCACCATATGGCAAAATAAT 60.559 41.667 22.18 0.00 39.32 1.28
2467 11220 1.713937 CGCGAGCACCATATGGCAAA 61.714 55.000 22.18 0.00 39.32 3.68
2559 11312 6.731164 TCGGGAATTGTTTAGAAGTTTGAAC 58.269 36.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.