AutoCloner

Multiple sequence alignment - TraesCS6B01G122700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G122700	chr6B	100.000	3053	0	0	1	3053	117771129	117774181	0.000000e+00	5638.0
1	TraesCS6B01G122700	chr6B	94.691	2505	109	11	61	2559	117801300	117803786	0.000000e+00	3868.0
2	TraesCS6B01G122700	chr6B	92.166	1902	142	7	1018	2915	117751112	117753010	0.000000e+00	2680.0
3	TraesCS6B01G122700	chr6B	91.859	1904	139	9	1009	2906	117791112	117793005	0.000000e+00	2643.0
4	TraesCS6B01G122700	chr6B	85.762	1489	182	26	525	1989	117839834	117841316	0.000000e+00	1548.0
5	TraesCS6B01G122700	chr6B	86.742	1418	153	25	627	2028	117836668	117838066	0.000000e+00	1544.0
6	TraesCS6B01G122700	chr6B	87.805	410	37	9	112	520	117805169	117805566	4.610000e-128	468.0
7	TraesCS6B01G122700	chr6B	95.374	281	6	1	2635	2915	117803786	117804059	1.000000e-119	440.0
8	TraesCS6B01G122700	chr6B	86.761	355	35	8	166	520	117781003	117781345	4.780000e-103	385.0
9	TraesCS6B01G122700	chr6B	100.000	72	0	0	1	72	117801211	117801282	1.910000e-27	134.0
10	TraesCS6B01G122700	chr6A	90.339	1532	105	21	514	2028	61408171	61409676	0.000000e+00	1969.0
11	TraesCS6B01G122700	chr6A	83.148	2071	268	52	306	2332	61399754	61401787	0.000000e+00	1816.0
12	TraesCS6B01G122700	chr6A	87.234	1410	162	14	627	2028	61411342	61412741	0.000000e+00	1591.0
13	TraesCS6B01G122700	chr6A	85.957	1296	156	20	752	2028	61414579	61415867	0.000000e+00	1362.0
14	TraesCS6B01G122700	chr6A	93.627	408	24	1	2508	2915	61405957	61406362	2.600000e-170	608.0
15	TraesCS6B01G122700	chr6A	95.337	193	9	0	2318	2510	61401803	61401995	1.060000e-79	307.0
16	TraesCS6B01G122700	chr6A	79.577	142	22	4	114	255	61413583	61413717	9.010000e-16	95.3
17	TraesCS6B01G122700	chr6D	86.219	1415	167	20	591	1987	53681841	53680437	0.000000e+00	1507.0
18	TraesCS6B01G122700	chr6D	98.507	134	2	0	2920	3053	464466003	464465870	1.410000e-58	237.0
19	TraesCS6B01G122700	chr6D	96.479	142	2	3	2914	3053	87386296	87386156	6.580000e-57	231.0
20	TraesCS6B01G122700	chr6D	79.870	154	24	5	112	265	53688122	53687976	4.160000e-19	106.0
21	TraesCS6B01G122700	chr6D	88.158	76	6	3	60	134	448533418	448533491	1.510000e-13	87.9
22	TraesCS6B01G122700	chrUn	98.507	134	2	0	2920	3053	83928410	83928543	1.410000e-58	237.0
23	TraesCS6B01G122700	chr3D	98.519	135	1	1	2920	3053	582706388	582706254	1.410000e-58	237.0
24	TraesCS6B01G122700	chr3D	97.810	137	2	1	2918	3053	5039876	5040012	5.090000e-58	235.0
25	TraesCS6B01G122700	chr3D	91.935	62	5	0	61	122	370069693	370069632	1.510000e-13	87.9
26	TraesCS6B01G122700	chr3A	96.403	139	5	0	2915	3053	716636763	716636901	2.370000e-56	230.0
27	TraesCS6B01G122700	chr1A	95.238	147	4	2	2908	3053	584944951	584945095	2.370000e-56	230.0
28	TraesCS6B01G122700	chr5D	95.775	142	4	2	2914	3053	244360795	244360654	8.520000e-56	228.0
29	TraesCS6B01G122700	chr2B	95.775	142	5	1	2912	3053	711001307	711001447	8.520000e-56	228.0
30	TraesCS6B01G122700	chr2B	87.013	77	8	1	61	137	695148661	695148735	5.420000e-13	86.1
31	TraesCS6B01G122700	chr2B	90.769	65	5	1	57	120	757370583	757370647	5.420000e-13	86.1
32	TraesCS6B01G122700	chr7A	95.000	60	3	0	61	120	714563770	714563711	9.010000e-16	95.3
33	TraesCS6B01G122700	chr1B	90.909	66	6	0	61	126	374500829	374500764	4.190000e-14	89.8
34	TraesCS6B01G122700	chr3B	89.552	67	7	0	56	122	13440335	13440401	5.420000e-13	86.1
35	TraesCS6B01G122700	chr2D	89.706	68	3	4	61	126	82757931	82757996	1.950000e-12	84.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G122700	chr6B	117771129	117774181	3052	False	5638.0	5638	100.000000	1	3053	1	chr6B.!!$F2	3052
1	TraesCS6B01G122700	chr6B	117751112	117753010	1898	False	2680.0	2680	92.166000	1018	2915	1	chr6B.!!$F1	1897
2	TraesCS6B01G122700	chr6B	117791112	117793005	1893	False	2643.0	2643	91.859000	1009	2906	1	chr6B.!!$F4	1897
3	TraesCS6B01G122700	chr6B	117836668	117841316	4648	False	1546.0	1548	86.252000	525	2028	2	chr6B.!!$F6	1503
4	TraesCS6B01G122700	chr6B	117801211	117805566	4355	False	1227.5	3868	94.467500	1	2915	4	chr6B.!!$F5	2914
5	TraesCS6B01G122700	chr6A	61399754	61415867	16113	False	1106.9	1969	87.888429	114	2915	7	chr6A.!!$F1	2801
6	TraesCS6B01G122700	chr6D	53680437	53681841	1404	True	1507.0	1507	86.219000	591	1987	1	chr6D.!!$R1	1396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
75	76	1.144913	ACTAGGGGCAAAACTGAGCAA	59.855	47.619	0.0	0.0	0.0	3.91	F
1272	1325	0.249573	CCGACCGTGTGTTGTACCTT	60.250	55.000	0.0	0.0	0.0	3.50	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1911	1965	0.890542	ACATGCTTCGTGGTGTGCAT	60.891	50.0	0.0	0.0	45.57	3.96	R
2963	15347	0.178301	TGGTGTTCGTTGTACTGCCA	59.822	50.0	0.0	0.0	0.00	4.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	2.154462	CACACTAGGGGCAAAACTGAG	58.846	52.381	0.00	0.00	0.00	3.35
75	76	1.144913	ACTAGGGGCAAAACTGAGCAA	59.855	47.619	0.00	0.00	0.00	3.91
76	77	1.815003	CTAGGGGCAAAACTGAGCAAG	59.185	52.381	0.00	0.00	0.00	4.01
129	159	9.612066	ATTAACCCAAAATTATAAGCATGTTGG	57.388	29.630	0.00	0.96	34.99	3.77
435	466	6.742109	TGAAAGGAGAAGCATTTTCTTTCAG	58.258	36.000	10.90	0.00	42.53	3.02
682	718	9.788960	GGTACATCCTATTTTGATTTTCAGAAC	57.211	33.333	0.00	0.00	0.00	3.01
750	786	1.154413	CGTTGCGCGATGCTTTCTT	60.154	52.632	12.10	0.00	46.63	2.52
875	916	2.424842	TTTCCTGGCTCCCATTGCGT	62.425	55.000	0.00	0.00	30.82	5.24
1011	1053	1.139058	CCTCCGTTGCCATAAGTAGCT	59.861	52.381	0.00	0.00	0.00	3.32
1127	1180	0.762461	CCATGTCCCTCTCCTCCTCC	60.762	65.000	0.00	0.00	0.00	4.30
1184	1237	3.832492	GCTCTCTTCGGCGAGGCT	61.832	66.667	14.76	0.00	0.00	4.58
1272	1325	0.249573	CCGACCGTGTGTTGTACCTT	60.250	55.000	0.00	0.00	0.00	3.50
1362	1415	1.371183	CGGACTTTCAGCTGACCCA	59.629	57.895	18.03	0.00	0.00	4.51
1526	1579	3.108376	AGATCTTTAGTGAGGGTGGTCC	58.892	50.000	0.00	0.00	0.00	4.46
1547	1600	1.833787	GACTACCTCGGCAACCCCAA	61.834	60.000	0.00	0.00	0.00	4.12
1607	1661	3.490759	GTCGTGCTCATGGGTGCG	61.491	66.667	0.00	0.00	36.33	5.34
1657	1711	1.072331	ACTTGGCGAGATTGTTGACCT	59.928	47.619	9.20	0.00	0.00	3.85
1697	1751	2.123640	GACCCTCTCGGCCTAGCT	60.124	66.667	0.00	0.00	33.26	3.32
1798	1852	4.471904	TCTTTGTCCAAGCTATCGTCAT	57.528	40.909	0.00	0.00	31.70	3.06
1911	1965	7.494625	CCGGCAAGTAAGATGTCTTAAAGATTA	59.505	37.037	4.16	0.00	39.84	1.75
1959	2015	4.021280	TGCGGTTTGAGTTGTACTACCATA	60.021	41.667	3.72	0.00	0.00	2.74
2091	2169	8.484799	TCATGCGCTTAATTAACTATTACTTCG	58.515	33.333	9.73	0.00	0.00	3.79
2135	2213	5.293324	CACTCAAATGGATAATTTCGGACGA	59.707	40.000	0.00	0.00	36.28	4.20
2165	2243	4.941263	GTGTCTGGCACTAAAATACATCCA	59.059	41.667	4.90	0.00	44.41	3.41
2276	2364	0.253327	GGAGCCTGAACGAGGGAAAT	59.747	55.000	0.00	0.00	43.07	2.17
2285	2373	6.462628	GCCTGAACGAGGGAAATACTAGTATT	60.463	42.308	20.27	20.27	43.07	1.89
2287	2375	7.985752	CCTGAACGAGGGAAATACTAGTATTTT	59.014	37.037	31.65	21.07	38.97	1.82
2427	2547	7.712264	TTCATAATTTGCAACAAAACAGAGG	57.288	32.000	0.00	0.00	0.00	3.69
2442	2562	5.772393	AACAGAGGGTGTCCAATTATACA	57.228	39.130	0.00	0.00	39.03	2.29
2520	6605	8.535335	AGTTAGAGACACATACACATTGATCTT	58.465	33.333	0.00	0.00	0.00	2.40
2596	6681	1.141053	GCCATCGTCATAGGGGAAAGT	59.859	52.381	0.00	0.00	0.00	2.66
2642	6727	4.650754	AGTACCTCCGTGCTATTACTTG	57.349	45.455	0.00	0.00	32.55	3.16
2769	6854	4.074970	CCAAACCTGACAGCTAGAACATT	58.925	43.478	0.00	0.00	0.00	2.71
2887	6972	6.864685	TCAGCAAATGCAAATCAACTAAGAAG	59.135	34.615	8.28	0.00	45.16	2.85
2909	6994	7.878644	AGAAGTACCAAACTCCTAGATGTTTTC	59.121	37.037	9.36	5.51	37.50	2.29
2915	7000	7.287696	ACCAAACTCCTAGATGTTTTCATGTTT	59.712	33.333	9.36	0.00	41.05	2.83
2916	7001	7.596248	CCAAACTCCTAGATGTTTTCATGTTTG	59.404	37.037	9.36	0.00	41.27	2.93
2918	7003	7.823745	ACTCCTAGATGTTTTCATGTTTGTT	57.176	32.000	0.00	0.00	41.05	2.83
2919	7004	8.237811	ACTCCTAGATGTTTTCATGTTTGTTT	57.762	30.769	0.00	0.00	41.05	2.83
2954	15338	8.673626	TGCGAAAAACTTTCAATCTATTCATC	57.326	30.769	0.00	0.00	0.00	2.92
2966	15350	8.107399	TCAATCTATTCATCTTCAATCATGGC	57.893	34.615	0.00	0.00	0.00	4.40
2968	15352	7.689446	ATCTATTCATCTTCAATCATGGCAG	57.311	36.000	0.00	0.00	0.00	4.85
2969	15353	6.598503	TCTATTCATCTTCAATCATGGCAGT	58.401	36.000	0.00	0.00	0.00	4.40
2970	15354	7.738847	TCTATTCATCTTCAATCATGGCAGTA	58.261	34.615	0.00	0.00	0.00	2.74
2971	15355	6.630444	ATTCATCTTCAATCATGGCAGTAC	57.370	37.500	0.00	0.00	0.00	2.73
2972	15356	5.101648	TCATCTTCAATCATGGCAGTACA	57.898	39.130	0.00	0.00	0.00	2.90
2974	15358	5.355071	TCATCTTCAATCATGGCAGTACAAC	59.645	40.000	0.00	0.00	0.00	3.32
2975	15359	3.684305	TCTTCAATCATGGCAGTACAACG	59.316	43.478	0.00	0.00	0.00	4.10
2976	15360	3.326836	TCAATCATGGCAGTACAACGA	57.673	42.857	0.00	0.00	0.00	3.85
2977	15361	3.669536	TCAATCATGGCAGTACAACGAA	58.330	40.909	0.00	0.00	0.00	3.85
2978	15362	3.435327	TCAATCATGGCAGTACAACGAAC	59.565	43.478	0.00	0.00	0.00	3.95
2980	15364	2.139917	TCATGGCAGTACAACGAACAC	58.860	47.619	0.00	0.00	0.00	3.32
2983	15367	0.865769	GGCAGTACAACGAACACCAG	59.134	55.000	0.00	0.00	0.00	4.00
2985	15369	2.206750	GCAGTACAACGAACACCAGAA	58.793	47.619	0.00	0.00	0.00	3.02
2986	15370	2.610374	GCAGTACAACGAACACCAGAAA	59.390	45.455	0.00	0.00	0.00	2.52
2988	15372	4.449743	GCAGTACAACGAACACCAGAAATA	59.550	41.667	0.00	0.00	0.00	1.40
2989	15373	5.049954	GCAGTACAACGAACACCAGAAATAA	60.050	40.000	0.00	0.00	0.00	1.40
2992	15376	7.911205	CAGTACAACGAACACCAGAAATAAAAA	59.089	33.333	0.00	0.00	0.00	1.94
2996	15380	9.240159	ACAACGAACACCAGAAATAAAAATTAC	57.760	29.630	0.00	0.00	0.00	1.89
2997	15381	9.239002	CAACGAACACCAGAAATAAAAATTACA	57.761	29.630	0.00	0.00	0.00	2.41
2999	15383	9.620660	ACGAACACCAGAAATAAAAATTACATC	57.379	29.630	0.00	0.00	0.00	3.06
3000	15384	9.072294	CGAACACCAGAAATAAAAATTACATCC	57.928	33.333	0.00	0.00	0.00	3.51
3001	15385	9.921637	GAACACCAGAAATAAAAATTACATCCA	57.078	29.630	0.00	0.00	0.00	3.41
3003	15387	9.308000	ACACCAGAAATAAAAATTACATCCAGA	57.692	29.630	0.00	0.00	0.00	3.86
3006	15390	9.971922	CCAGAAATAAAAATTACATCCAGATCC	57.028	33.333	0.00	0.00	0.00	3.36
3007	15391	9.669353	CAGAAATAAAAATTACATCCAGATCCG	57.331	33.333	0.00	0.00	0.00	4.18
3012	15396	7.787725	AAAAATTACATCCAGATCCGTAGAC	57.212	36.000	0.00	0.00	0.00	2.59
3013	15397	5.470047	AATTACATCCAGATCCGTAGACC	57.530	43.478	0.00	0.00	0.00	3.85
3014	15398	2.454336	ACATCCAGATCCGTAGACCA	57.546	50.000	0.00	0.00	0.00	4.02
3015	15399	2.032620	ACATCCAGATCCGTAGACCAC	58.967	52.381	0.00	0.00	0.00	4.16
3016	15400	1.341531	CATCCAGATCCGTAGACCACC	59.658	57.143	0.00	0.00	0.00	4.61
3018	15402	0.686441	CCAGATCCGTAGACCACCCA	60.686	60.000	0.00	0.00	0.00	4.51
3019	15403	0.747255	CAGATCCGTAGACCACCCAG	59.253	60.000	0.00	0.00	0.00	4.45
3020	15404	1.043673	AGATCCGTAGACCACCCAGC	61.044	60.000	0.00	0.00	0.00	4.85
3021	15405	2.351336	GATCCGTAGACCACCCAGCG	62.351	65.000	0.00	0.00	0.00	5.18
3023	15407	2.181021	CGTAGACCACCCAGCGAC	59.819	66.667	0.00	0.00	0.00	5.19
3025	15409	2.034532	TAGACCACCCAGCGACGA	59.965	61.111	0.00	0.00	0.00	4.20
3026	15410	2.338015	TAGACCACCCAGCGACGAC	61.338	63.158	0.00	0.00	0.00	4.34
3027	15411	2.759641	TAGACCACCCAGCGACGACT	62.760	60.000	0.00	0.00	0.00	4.18
3031	15415	1.287815	CACCCAGCGACGACTACAA	59.712	57.895	0.00	0.00	0.00	2.41
3032	15416	0.732880	CACCCAGCGACGACTACAAG	60.733	60.000	0.00	0.00	0.00	3.16
3033	15417	1.805945	CCCAGCGACGACTACAAGC	60.806	63.158	0.00	0.00	0.00	4.01
3034	15418	1.080772	CCAGCGACGACTACAAGCA	60.081	57.895	0.00	0.00	0.00	3.91
3035	15419	1.344942	CCAGCGACGACTACAAGCAC	61.345	60.000	0.00	0.00	0.00	4.40
3037	15421	0.387367	AGCGACGACTACAAGCACTG	60.387	55.000	0.00	0.00	0.00	3.66
3041	15425	1.721926	GACGACTACAAGCACTGAAGC	59.278	52.381	0.00	0.00	0.00	3.86
3043	15427	1.666023	CGACTACAAGCACTGAAGCGA	60.666	52.381	0.00	0.00	40.15	4.93
3045	15429	0.718343	CTACAAGCACTGAAGCGAGC	59.282	55.000	0.00	0.00	40.15	5.03
3046	15430	0.670546	TACAAGCACTGAAGCGAGCC	60.671	55.000	0.00	0.00	40.15	4.70
3047	15431	2.740055	AAGCACTGAAGCGAGCCG	60.740	61.111	0.00	0.00	40.15	5.52
3050	15434	2.734673	GCACTGAAGCGAGCCGAAG	61.735	63.158	0.00	0.00	0.00	3.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	0.946221	CCTCAGTCGTGTCCACTTGC	60.946	60.000	0.00	0.00	0.00	4.01
75	76	2.574955	GCCCTCAGTCGTGTCCACT	61.575	63.158	0.00	0.00	0.00	4.00
76	77	2.048127	GCCCTCAGTCGTGTCCAC	60.048	66.667	0.00	0.00	0.00	4.02
682	718	3.250744	TGTCCTCACGAATCTTTTAGCG	58.749	45.455	0.00	0.00	0.00	4.26
875	916	5.598416	TCTCTTGTTCTCAGAACACTTGA	57.402	39.130	20.26	16.01	0.00	3.02
1011	1053	3.054361	GCCTTGAAATGAGAGGGAAGGTA	60.054	47.826	0.00	0.00	33.80	3.08
1102	1155	0.909610	GGAGAGGGACATGGTGGTGA	60.910	60.000	0.00	0.00	0.00	4.02
1212	1265	0.890996	AGGAAACCTGCTTCGCCTTG	60.891	55.000	0.00	0.00	29.57	3.61
1248	1301	4.164087	AACACACGGTCGGCACCA	62.164	61.111	6.86	0.00	44.02	4.17
1272	1325	4.631740	TCACCGGAGAGTGGGCCA	62.632	66.667	9.46	0.00	38.34	5.36
1362	1415	1.896465	CGGTTCTTGGAGAAGGTCTCT	59.104	52.381	5.31	0.00	42.95	3.10
1462	1515	1.166531	GCCTCACCAAACTTGACGCT	61.167	55.000	0.00	0.00	0.00	5.07
1547	1600	3.964875	CTTTGCGCGGCACAAGGT	61.965	61.111	8.83	0.00	38.71	3.50
1649	1703	4.543689	CTCCTGGGTATAGTAGGTCAACA	58.456	47.826	0.00	0.00	33.30	3.33
1657	1711	1.503784	AGCTGCCTCCTGGGTATAGTA	59.496	52.381	0.00	0.00	37.43	1.82
1697	1751	3.000819	AATGCCTCGGGGTCGTCA	61.001	61.111	1.62	0.00	37.69	4.35
1911	1965	0.890542	ACATGCTTCGTGGTGTGCAT	60.891	50.000	0.00	0.00	45.57	3.96
1959	2015	8.822855	TCGCACAAAATTCTCGTAATATACATT	58.177	29.630	0.00	0.00	0.00	2.71
2091	2169	3.187842	GTGACAAGTAATTCCGAACCCAC	59.812	47.826	0.00	0.00	0.00	4.61
2128	2206	1.210931	GACACATCCGTTCGTCCGA	59.789	57.895	0.00	0.00	0.00	4.55
2165	2243	6.899393	TCAGAAATTACTTGTGGCTCAAAT	57.101	33.333	3.37	0.00	35.48	2.32
2427	2547	6.262944	TCATTGATGCTGTATAATTGGACACC	59.737	38.462	0.00	0.00	0.00	4.16
2495	2616	8.598924	CAAGATCAATGTGTATGTGTCTCTAAC	58.401	37.037	0.00	0.00	0.00	2.34
2596	6681	9.534565	CTTCTTCGATGGAGAAATCTAACAATA	57.465	33.333	0.11	0.00	0.00	1.90
2769	6854	8.048016	TGGGGATGATCATATATGATGCAATA	57.952	34.615	28.79	12.38	46.84	1.90
2887	6972	7.390718	ACATGAAAACATCTAGGAGTTTGGTAC	59.609	37.037	0.00	0.00	37.94	3.34
2927	14918	8.864069	TGAATAGATTGAAAGTTTTTCGCAAA	57.136	26.923	0.00	0.00	0.00	3.68
2928	14919	9.128107	GATGAATAGATTGAAAGTTTTTCGCAA	57.872	29.630	0.00	0.00	0.00	4.85
2940	14931	8.573885	GCCATGATTGAAGATGAATAGATTGAA	58.426	33.333	0.00	0.00	0.00	2.69
2947	14938	7.281841	TGTACTGCCATGATTGAAGATGAATA	58.718	34.615	0.00	0.00	0.00	1.75
2954	15338	3.684305	TCGTTGTACTGCCATGATTGAAG	59.316	43.478	0.00	0.00	0.00	3.02
2958	15342	3.188460	GTGTTCGTTGTACTGCCATGATT	59.812	43.478	0.00	0.00	0.00	2.57
2959	15343	2.742053	GTGTTCGTTGTACTGCCATGAT	59.258	45.455	0.00	0.00	0.00	2.45
2960	15344	2.139917	GTGTTCGTTGTACTGCCATGA	58.860	47.619	0.00	0.00	0.00	3.07
2963	15347	0.178301	TGGTGTTCGTTGTACTGCCA	59.822	50.000	0.00	0.00	0.00	4.92
2964	15348	0.865769	CTGGTGTTCGTTGTACTGCC	59.134	55.000	0.00	0.00	0.00	4.85
2965	15349	1.860676	TCTGGTGTTCGTTGTACTGC	58.139	50.000	0.00	0.00	0.00	4.40
2966	15350	6.533819	TTATTTCTGGTGTTCGTTGTACTG	57.466	37.500	0.00	0.00	0.00	2.74
2968	15352	8.791355	ATTTTTATTTCTGGTGTTCGTTGTAC	57.209	30.769	0.00	0.00	0.00	2.90
2970	15354	9.240159	GTAATTTTTATTTCTGGTGTTCGTTGT	57.760	29.630	0.00	0.00	0.00	3.32
2971	15355	9.239002	TGTAATTTTTATTTCTGGTGTTCGTTG	57.761	29.630	0.00	0.00	0.00	4.10
2972	15356	9.974980	ATGTAATTTTTATTTCTGGTGTTCGTT	57.025	25.926	0.00	0.00	0.00	3.85
2974	15358	9.072294	GGATGTAATTTTTATTTCTGGTGTTCG	57.928	33.333	0.00	0.00	0.00	3.95
2975	15359	9.921637	TGGATGTAATTTTTATTTCTGGTGTTC	57.078	29.630	0.00	0.00	0.00	3.18
2976	15360	9.927668	CTGGATGTAATTTTTATTTCTGGTGTT	57.072	29.630	0.00	0.00	0.00	3.32
2977	15361	9.308000	TCTGGATGTAATTTTTATTTCTGGTGT	57.692	29.630	0.00	0.00	0.00	4.16
2980	15364	9.971922	GGATCTGGATGTAATTTTTATTTCTGG	57.028	33.333	0.00	0.00	0.00	3.86
2986	15370	9.490379	GTCTACGGATCTGGATGTAATTTTTAT	57.510	33.333	6.47	0.00	0.00	1.40
2988	15372	6.766467	GGTCTACGGATCTGGATGTAATTTTT	59.234	38.462	6.47	0.00	0.00	1.94
2989	15373	6.126883	TGGTCTACGGATCTGGATGTAATTTT	60.127	38.462	6.47	0.00	0.00	1.82
2992	15376	4.281182	GTGGTCTACGGATCTGGATGTAAT	59.719	45.833	6.47	0.00	0.00	1.89
2995	15379	2.032620	GTGGTCTACGGATCTGGATGT	58.967	52.381	6.47	0.00	0.00	3.06
2996	15380	1.341531	GGTGGTCTACGGATCTGGATG	59.658	57.143	6.47	0.00	0.00	3.51
2997	15381	1.705873	GGTGGTCTACGGATCTGGAT	58.294	55.000	6.47	0.00	0.00	3.41
2999	15383	0.686441	TGGGTGGTCTACGGATCTGG	60.686	60.000	6.47	0.00	0.00	3.86
3000	15384	0.747255	CTGGGTGGTCTACGGATCTG	59.253	60.000	0.00	0.00	0.00	2.90
3001	15385	1.043673	GCTGGGTGGTCTACGGATCT	61.044	60.000	0.00	0.00	0.00	2.75
3003	15387	2.423898	CGCTGGGTGGTCTACGGAT	61.424	63.158	0.00	0.00	0.00	4.18
3006	15390	2.181021	GTCGCTGGGTGGTCTACG	59.819	66.667	0.00	0.00	0.00	3.51
3007	15391	2.181021	CGTCGCTGGGTGGTCTAC	59.819	66.667	0.00	0.00	0.00	2.59
3010	15394	2.338015	TAGTCGTCGCTGGGTGGTC	61.338	63.158	0.00	0.00	0.00	4.02
3011	15395	2.282674	TAGTCGTCGCTGGGTGGT	60.283	61.111	0.00	0.00	0.00	4.16
3012	15396	2.149803	TTGTAGTCGTCGCTGGGTGG	62.150	60.000	0.00	0.00	0.00	4.61
3013	15397	0.732880	CTTGTAGTCGTCGCTGGGTG	60.733	60.000	0.00	0.00	0.00	4.61
3014	15398	1.585006	CTTGTAGTCGTCGCTGGGT	59.415	57.895	0.00	0.00	0.00	4.51
3015	15399	1.805945	GCTTGTAGTCGTCGCTGGG	60.806	63.158	0.00	0.00	0.00	4.45
3016	15400	1.080772	TGCTTGTAGTCGTCGCTGG	60.081	57.895	0.00	0.00	0.00	4.85
3018	15402	0.387367	CAGTGCTTGTAGTCGTCGCT	60.387	55.000	0.00	0.00	0.00	4.93
3019	15403	0.386858	TCAGTGCTTGTAGTCGTCGC	60.387	55.000	0.00	0.00	0.00	5.19
3020	15404	1.979469	CTTCAGTGCTTGTAGTCGTCG	59.021	52.381	0.00	0.00	0.00	5.12
3021	15405	1.721926	GCTTCAGTGCTTGTAGTCGTC	59.278	52.381	0.00	0.00	0.00	4.20
3023	15407	0.710567	CGCTTCAGTGCTTGTAGTCG	59.289	55.000	0.00	0.00	0.00	4.18
3025	15409	1.937108	GCTCGCTTCAGTGCTTGTAGT	60.937	52.381	0.00	0.00	0.00	2.73
3026	15410	0.718343	GCTCGCTTCAGTGCTTGTAG	59.282	55.000	0.00	0.00	0.00	2.74
3027	15411	0.670546	GGCTCGCTTCAGTGCTTGTA	60.671	55.000	0.00	0.00	0.00	2.41
3031	15415	3.226429	TTCGGCTCGCTTCAGTGCT	62.226	57.895	0.00	0.00	0.00	4.40
3032	15416	2.734673	CTTCGGCTCGCTTCAGTGC	61.735	63.158	0.00	0.00	0.00	4.40
3033	15417	2.097038	CCTTCGGCTCGCTTCAGTG	61.097	63.158	0.00	0.00	0.00	3.66
3034	15418	2.262915	CCTTCGGCTCGCTTCAGT	59.737	61.111	0.00	0.00	0.00	3.41
3035	15419	3.191539	GCCTTCGGCTCGCTTCAG	61.192	66.667	0.00	0.00	46.69	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.