Multiple sequence alignment - TraesCS6B01G122300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G122300 chr6B 100.000 2468 0 0 1 2468 117540183 117542650 0.000000e+00 4558.0
1 TraesCS6B01G122300 chr6B 86.718 783 79 15 737 1511 117588651 117589416 0.000000e+00 846.0
2 TraesCS6B01G122300 chr6B 84.091 792 84 18 740 1508 117630524 117631296 0.000000e+00 726.0
3 TraesCS6B01G122300 chr6B 92.671 423 25 3 1837 2256 117631678 117632097 2.710000e-169 604.0
4 TraesCS6B01G122300 chr6B 92.941 170 8 4 1673 1839 117631479 117631647 6.820000e-61 244.0
5 TraesCS6B01G122300 chr6B 74.893 466 63 27 200 658 117587876 117588294 1.960000e-36 163.0
6 TraesCS6B01G122300 chr6A 91.450 655 54 2 1 654 61130113 61130766 0.000000e+00 898.0
7 TraesCS6B01G122300 chr6A 88.083 772 48 17 1521 2259 61186303 61187063 0.000000e+00 876.0
8 TraesCS6B01G122300 chr6A 85.695 734 63 17 737 1445 61136483 61137199 0.000000e+00 736.0
9 TraesCS6B01G122300 chr6A 87.685 609 52 8 853 1445 61185582 61186183 0.000000e+00 688.0
10 TraesCS6B01G122300 chr6A 85.366 328 29 11 1521 1836 61137315 61137635 3.060000e-84 322.0
11 TraesCS6B01G122300 chr6D 85.266 733 62 21 740 1445 53850417 53849704 0.000000e+00 713.0
12 TraesCS6B01G122300 chr6D 94.048 420 22 1 1837 2256 53848764 53848348 3.460000e-178 634.0
13 TraesCS6B01G122300 chr6D 90.323 155 15 0 1682 1836 53848953 53848799 1.160000e-48 204.0
14 TraesCS6B01G122300 chr6D 79.688 192 24 8 1521 1704 53849592 53849408 9.270000e-25 124.0
15 TraesCS6B01G122300 chr2D 82.353 68 11 1 34 100 486397013 486397080 9.530000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G122300 chr6B 117540183 117542650 2467 False 4558.000000 4558 100.00000 1 2468 1 chr6B.!!$F1 2467
1 TraesCS6B01G122300 chr6B 117630524 117632097 1573 False 524.666667 726 89.90100 740 2256 3 chr6B.!!$F3 1516
2 TraesCS6B01G122300 chr6B 117587876 117589416 1540 False 504.500000 846 80.80550 200 1511 2 chr6B.!!$F2 1311
3 TraesCS6B01G122300 chr6A 61130113 61130766 653 False 898.000000 898 91.45000 1 654 1 chr6A.!!$F1 653
4 TraesCS6B01G122300 chr6A 61185582 61187063 1481 False 782.000000 876 87.88400 853 2259 2 chr6A.!!$F3 1406
5 TraesCS6B01G122300 chr6A 61136483 61137635 1152 False 529.000000 736 85.53050 737 1836 2 chr6A.!!$F2 1099
6 TraesCS6B01G122300 chr6D 53848348 53850417 2069 True 418.750000 713 87.33125 740 2256 4 chr6D.!!$R1 1516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.912486 AATGTAGGAGTGGACTGGCC 59.088 55.0 0.0 0.0 37.1 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1860 0.040958 CAGCGACAACTCAAAGCACC 60.041 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.402875 CGACTGATGATGATGATGTGTTTGTT 60.403 38.462 0.00 0.00 0.00 2.83
69 70 5.467735 GCAATGAAGCTTGGAAGAACAAAAT 59.532 36.000 2.10 0.00 0.00 1.82
86 87 0.912486 AATGTAGGAGTGGACTGGCC 59.088 55.000 0.00 0.00 37.10 5.36
89 90 1.159905 TAGGAGTGGACTGGCCCAA 59.840 57.895 0.00 0.00 38.06 4.12
113 114 1.571919 GGCTAACATAGGCTGACACG 58.428 55.000 0.00 0.00 46.78 4.49
121 122 3.068307 ACATAGGCTGACACGGATCTAAC 59.932 47.826 0.00 0.00 0.00 2.34
122 123 1.557099 AGGCTGACACGGATCTAACA 58.443 50.000 0.00 0.00 0.00 2.41
124 125 2.301870 AGGCTGACACGGATCTAACAAA 59.698 45.455 0.00 0.00 0.00 2.83
131 132 6.464222 TGACACGGATCTAACAAAGAAGAAT 58.536 36.000 0.00 0.00 37.89 2.40
132 133 6.934645 TGACACGGATCTAACAAAGAAGAATT 59.065 34.615 0.00 0.00 37.89 2.17
182 183 5.572896 CGAGGATGGTGAACTTTTAATTTGC 59.427 40.000 0.00 0.00 0.00 3.68
193 194 8.816144 TGAACTTTTAATTTGCAGTGTCATTTC 58.184 29.630 0.00 0.00 0.00 2.17
226 227 3.063588 GGACGAACTGCCATTAGTTTAGC 59.936 47.826 0.00 0.00 40.78 3.09
228 229 4.069304 ACGAACTGCCATTAGTTTAGCAA 58.931 39.130 0.00 0.00 40.78 3.91
283 284 7.767198 TGCCTATATAGTTTCAGTGTGGTAAAC 59.233 37.037 8.92 0.00 34.13 2.01
368 369 3.846588 ACATCTCCACAGTCATAACCCTT 59.153 43.478 0.00 0.00 0.00 3.95
371 372 5.677319 TCTCCACAGTCATAACCCTTAAG 57.323 43.478 0.00 0.00 0.00 1.85
373 374 5.046591 TCTCCACAGTCATAACCCTTAAGTG 60.047 44.000 0.97 0.00 0.00 3.16
388 389 5.355596 CCTTAAGTGATGCAAACCAAACAA 58.644 37.500 0.97 0.00 0.00 2.83
522 527 2.367894 TGCAGGCAACCAAATTCATTCA 59.632 40.909 0.00 0.00 37.17 2.57
572 579 5.633927 TCTTGAGAATGAAAATGCATCACG 58.366 37.500 0.00 0.00 0.00 4.35
574 581 4.009002 TGAGAATGAAAATGCATCACGGA 58.991 39.130 0.00 0.00 0.00 4.69
576 583 2.830772 ATGAAAATGCATCACGGACG 57.169 45.000 0.00 0.00 0.00 4.79
589 596 1.370172 CGGACGCCGCATAGTCTAC 60.370 63.158 5.38 0.00 41.17 2.59
608 615 8.489676 AGTCTACATGAACATCATCTCCTATT 57.510 34.615 0.00 0.00 34.28 1.73
658 666 9.301153 GAAATAAACGCAAGAAAATATGACCAT 57.699 29.630 0.00 0.00 43.62 3.55
659 667 9.651913 AAATAAACGCAAGAAAATATGACCATT 57.348 25.926 0.00 0.00 43.62 3.16
660 668 9.651913 AATAAACGCAAGAAAATATGACCATTT 57.348 25.926 0.00 0.00 43.62 2.32
663 671 8.633075 AACGCAAGAAAATATGACCATTTATG 57.367 30.769 0.00 0.00 43.62 1.90
664 672 7.771183 ACGCAAGAAAATATGACCATTTATGT 58.229 30.769 0.00 0.00 43.62 2.29
681 689 8.393366 CCATTTATGTCAAGTCTAAGACACATG 58.607 37.037 9.50 11.05 46.38 3.21
682 690 7.905604 TTTATGTCAAGTCTAAGACACATGG 57.094 36.000 9.50 0.00 46.38 3.66
684 692 5.545063 TGTCAAGTCTAAGACACATGGAA 57.455 39.130 0.00 0.00 39.65 3.53
685 693 5.297547 TGTCAAGTCTAAGACACATGGAAC 58.702 41.667 0.00 0.00 39.65 3.62
686 694 4.691216 GTCAAGTCTAAGACACATGGAACC 59.309 45.833 0.00 0.00 34.60 3.62
687 695 4.593206 TCAAGTCTAAGACACATGGAACCT 59.407 41.667 0.00 0.00 34.60 3.50
688 696 5.778241 TCAAGTCTAAGACACATGGAACCTA 59.222 40.000 0.00 0.00 34.60 3.08
696 918 2.239654 ACACATGGAACCTACCCATCTG 59.760 50.000 0.00 0.00 42.18 2.90
708 930 4.520492 CCTACCCATCTGAATTATTGCCAC 59.480 45.833 0.00 0.00 0.00 5.01
709 931 2.951642 ACCCATCTGAATTATTGCCACG 59.048 45.455 0.00 0.00 0.00 4.94
734 956 3.403936 CCGAAAAGGCCCCTGATAG 57.596 57.895 0.00 0.00 0.00 2.08
744 1036 1.414158 CCCCTGATAGTCGGTGACAT 58.586 55.000 0.00 0.00 34.60 3.06
767 1059 1.591863 GCCGAGTCCGAATAGGCAC 60.592 63.158 14.21 0.00 46.48 5.01
796 1101 1.890876 TGGCTTTGCTCGTACAACAT 58.109 45.000 0.00 0.00 0.00 2.71
806 1111 3.365868 GCTCGTACAACATTGGCATTCAA 60.366 43.478 0.00 0.00 40.01 2.69
898 1203 1.546029 CCGCTCCAATCTCGATCCATA 59.454 52.381 0.00 0.00 0.00 2.74
905 1210 1.189752 ATCTCGATCCATAGCCGCAT 58.810 50.000 0.00 0.00 0.00 4.73
915 1220 1.967535 TAGCCGCATAGCTAGCTGG 59.032 57.895 27.68 19.86 42.70 4.85
945 1267 4.260907 CGATCGATCAATTGCAATCAGGTT 60.261 41.667 24.40 0.95 0.00 3.50
1023 1345 0.972983 TCTGCCTGCTAGTGTCTCCC 60.973 60.000 0.00 0.00 0.00 4.30
1025 1347 3.082579 GCCTGCTAGTGTCTCCCGG 62.083 68.421 0.00 0.00 0.00 5.73
1152 1477 2.863346 CGCGGTGGATATCCCCGAA 61.863 63.158 36.23 13.96 46.14 4.30
1245 1579 1.609501 TAGGGTGCTCGTGAAGGCT 60.610 57.895 0.00 0.00 0.00 4.58
1428 1763 1.385206 GAGGGAGGAGCAAGGGGAT 60.385 63.158 0.00 0.00 0.00 3.85
1434 1769 1.152368 GGAGCAAGGGGATGATGGG 59.848 63.158 0.00 0.00 0.00 4.00
1468 1804 4.143200 GCGCGGATTCGTATGATGATTAAA 60.143 41.667 8.83 0.00 38.89 1.52
1469 1805 5.541910 CGCGGATTCGTATGATGATTAAAG 58.458 41.667 0.00 0.00 38.89 1.85
1472 1812 5.932303 CGGATTCGTATGATGATTAAAGGGT 59.068 40.000 0.00 0.00 0.00 4.34
1478 1818 7.287061 TCGTATGATGATTAAAGGGTTCCAAT 58.713 34.615 0.00 0.00 0.00 3.16
1511 1852 7.387948 GGAATATGTGAAGACGTAATTAGGCAT 59.612 37.037 5.09 2.87 0.00 4.40
1513 1854 8.758633 ATATGTGAAGACGTAATTAGGCATAC 57.241 34.615 5.09 0.00 0.00 2.39
1515 1856 6.040247 TGTGAAGACGTAATTAGGCATACAG 58.960 40.000 5.09 0.00 0.00 2.74
1516 1857 5.462398 GTGAAGACGTAATTAGGCATACAGG 59.538 44.000 5.09 0.00 0.00 4.00
1519 1860 5.844004 AGACGTAATTAGGCATACAGGAAG 58.156 41.667 5.09 0.00 0.00 3.46
1526 1942 1.355720 AGGCATACAGGAAGGTGCTTT 59.644 47.619 0.00 0.00 37.70 3.51
1534 1950 2.291741 CAGGAAGGTGCTTTGAGTTGTC 59.708 50.000 0.00 0.00 0.00 3.18
1536 1952 0.663153 AAGGTGCTTTGAGTTGTCGC 59.337 50.000 0.00 0.00 0.00 5.19
1538 1954 0.040958 GGTGCTTTGAGTTGTCGCTG 60.041 55.000 0.00 0.00 0.00 5.18
1553 1969 3.938963 TGTCGCTGGAAGGTTTATGAATC 59.061 43.478 0.00 0.00 0.00 2.52
1555 1971 4.636206 GTCGCTGGAAGGTTTATGAATCTT 59.364 41.667 0.00 0.00 38.90 2.40
1556 1972 5.123979 GTCGCTGGAAGGTTTATGAATCTTT 59.876 40.000 0.00 0.00 36.36 2.52
1628 2050 8.737168 AGCTAAGATATGAAATGCTGTAACAA 57.263 30.769 0.00 0.00 0.00 2.83
1629 2051 9.347240 AGCTAAGATATGAAATGCTGTAACAAT 57.653 29.630 0.00 0.00 0.00 2.71
1667 2089 6.292596 GCAATGTAAATTTCTGCGGAAAAACA 60.293 34.615 23.89 24.29 43.51 2.83
1784 2688 3.735591 TGTTAACCGCCCTAATGATAGC 58.264 45.455 2.48 0.00 0.00 2.97
1789 2693 2.224305 ACCGCCCTAATGATAGCACTTC 60.224 50.000 0.00 0.00 0.00 3.01
1790 2694 2.037772 CCGCCCTAATGATAGCACTTCT 59.962 50.000 0.00 0.00 0.00 2.85
1828 2732 1.831343 CATAAATGCGACTTGCCTGC 58.169 50.000 0.00 0.00 45.60 4.85
1865 2803 0.251916 CCTCACGATGCCAACCCTAA 59.748 55.000 0.00 0.00 0.00 2.69
1909 2847 2.360852 TCCGACAGGGAGGACGAC 60.361 66.667 0.00 0.00 40.94 4.34
1910 2848 3.812019 CCGACAGGGAGGACGACG 61.812 72.222 0.00 0.00 38.47 5.12
2156 3100 1.615384 GCTCATGGGGCTTGAACTCTT 60.615 52.381 0.00 0.00 0.00 2.85
2242 3186 4.394712 GTCCTGGAGGTGCCACGG 62.395 72.222 0.00 0.00 43.33 4.94
2256 3200 0.034896 CCACGGGAGCAAACACTAGT 59.965 55.000 0.00 0.00 0.00 2.57
2259 3203 2.223377 CACGGGAGCAAACACTAGTTTC 59.777 50.000 0.00 0.00 45.80 2.78
2260 3204 2.158871 ACGGGAGCAAACACTAGTTTCA 60.159 45.455 0.00 0.00 45.80 2.69
2261 3205 3.074412 CGGGAGCAAACACTAGTTTCAT 58.926 45.455 0.00 0.00 45.80 2.57
2262 3206 3.120199 CGGGAGCAAACACTAGTTTCATG 60.120 47.826 0.00 0.00 45.80 3.07
2263 3207 3.821033 GGGAGCAAACACTAGTTTCATGT 59.179 43.478 0.00 0.00 45.80 3.21
2264 3208 4.278419 GGGAGCAAACACTAGTTTCATGTT 59.722 41.667 0.00 0.00 45.80 2.71
2265 3209 5.221244 GGGAGCAAACACTAGTTTCATGTTT 60.221 40.000 0.00 0.00 45.80 2.83
2266 3210 6.273071 GGAGCAAACACTAGTTTCATGTTTT 58.727 36.000 5.84 0.00 45.80 2.43
2267 3211 7.422399 GGAGCAAACACTAGTTTCATGTTTTA 58.578 34.615 5.84 0.00 45.80 1.52
2268 3212 7.918562 GGAGCAAACACTAGTTTCATGTTTTAA 59.081 33.333 5.84 0.00 45.80 1.52
2269 3213 9.463443 GAGCAAACACTAGTTTCATGTTTTAAT 57.537 29.630 5.84 0.00 45.80 1.40
2270 3214 9.816354 AGCAAACACTAGTTTCATGTTTTAATT 57.184 25.926 5.84 0.00 45.80 1.40
2295 3239 7.839680 ATTAACCTTTTTCACATCAGGAAGT 57.160 32.000 0.00 0.00 0.00 3.01
2296 3240 8.934023 ATTAACCTTTTTCACATCAGGAAGTA 57.066 30.769 0.00 0.00 0.00 2.24
2297 3241 6.884280 AACCTTTTTCACATCAGGAAGTAG 57.116 37.500 0.00 0.00 0.00 2.57
2298 3242 5.316987 ACCTTTTTCACATCAGGAAGTAGG 58.683 41.667 0.00 0.00 34.98 3.18
2299 3243 4.702131 CCTTTTTCACATCAGGAAGTAGGG 59.298 45.833 0.00 0.00 0.00 3.53
2300 3244 5.514834 CCTTTTTCACATCAGGAAGTAGGGA 60.515 44.000 0.00 0.00 0.00 4.20
2301 3245 4.553330 TTTCACATCAGGAAGTAGGGAC 57.447 45.455 0.00 0.00 0.00 4.46
2302 3246 3.184382 TCACATCAGGAAGTAGGGACA 57.816 47.619 0.00 0.00 0.00 4.02
2303 3247 3.516586 TCACATCAGGAAGTAGGGACAA 58.483 45.455 0.00 0.00 0.00 3.18
2304 3248 3.515502 TCACATCAGGAAGTAGGGACAAG 59.484 47.826 0.00 0.00 0.00 3.16
2305 3249 3.261897 CACATCAGGAAGTAGGGACAAGT 59.738 47.826 0.00 0.00 0.00 3.16
2306 3250 3.261897 ACATCAGGAAGTAGGGACAAGTG 59.738 47.826 0.00 0.00 0.00 3.16
2307 3251 3.254093 TCAGGAAGTAGGGACAAGTGA 57.746 47.619 0.00 0.00 0.00 3.41
2308 3252 3.165875 TCAGGAAGTAGGGACAAGTGAG 58.834 50.000 0.00 0.00 0.00 3.51
2309 3253 3.165875 CAGGAAGTAGGGACAAGTGAGA 58.834 50.000 0.00 0.00 0.00 3.27
2310 3254 3.056465 CAGGAAGTAGGGACAAGTGAGAC 60.056 52.174 0.00 0.00 0.00 3.36
2311 3255 2.897969 GGAAGTAGGGACAAGTGAGACA 59.102 50.000 0.00 0.00 0.00 3.41
2312 3256 3.515901 GGAAGTAGGGACAAGTGAGACAT 59.484 47.826 0.00 0.00 0.00 3.06
2313 3257 4.020128 GGAAGTAGGGACAAGTGAGACATT 60.020 45.833 0.00 0.00 0.00 2.71
2314 3258 4.543590 AGTAGGGACAAGTGAGACATTG 57.456 45.455 0.00 0.00 0.00 2.82
2315 3259 3.904339 AGTAGGGACAAGTGAGACATTGT 59.096 43.478 0.00 0.00 42.17 2.71
2316 3260 5.084519 AGTAGGGACAAGTGAGACATTGTA 58.915 41.667 0.00 0.00 39.66 2.41
2317 3261 4.273148 AGGGACAAGTGAGACATTGTAC 57.727 45.455 0.00 0.00 39.66 2.90
2318 3262 3.646162 AGGGACAAGTGAGACATTGTACA 59.354 43.478 0.00 0.00 41.24 2.90
2319 3263 3.746492 GGGACAAGTGAGACATTGTACAC 59.254 47.826 14.67 14.67 41.24 2.90
2320 3264 3.746492 GGACAAGTGAGACATTGTACACC 59.254 47.826 17.26 7.19 39.59 4.16
2321 3265 4.503296 GGACAAGTGAGACATTGTACACCT 60.503 45.833 17.26 7.19 39.59 4.00
2322 3266 5.036117 ACAAGTGAGACATTGTACACCTT 57.964 39.130 17.26 11.15 37.85 3.50
2323 3267 5.057149 ACAAGTGAGACATTGTACACCTTC 58.943 41.667 17.26 0.00 37.85 3.46
2324 3268 4.273148 AGTGAGACATTGTACACCTTCC 57.727 45.455 17.26 0.00 34.33 3.46
2325 3269 3.646162 AGTGAGACATTGTACACCTTCCA 59.354 43.478 17.26 0.00 34.33 3.53
2326 3270 4.287067 AGTGAGACATTGTACACCTTCCAT 59.713 41.667 17.26 0.00 34.33 3.41
2327 3271 5.483937 AGTGAGACATTGTACACCTTCCATA 59.516 40.000 17.26 0.00 34.33 2.74
2328 3272 6.156949 AGTGAGACATTGTACACCTTCCATAT 59.843 38.462 17.26 0.00 34.33 1.78
2329 3273 6.823689 GTGAGACATTGTACACCTTCCATATT 59.176 38.462 12.62 0.00 0.00 1.28
2330 3274 7.985184 GTGAGACATTGTACACCTTCCATATTA 59.015 37.037 12.62 0.00 0.00 0.98
2331 3275 8.713971 TGAGACATTGTACACCTTCCATATTAT 58.286 33.333 0.00 0.00 0.00 1.28
2353 3297 9.600432 ATTATAGATAGATCCATTAGCCTCTCC 57.400 37.037 0.00 0.00 0.00 3.71
2354 3298 5.282436 AGATAGATCCATTAGCCTCTCCA 57.718 43.478 0.00 0.00 0.00 3.86
2355 3299 5.022787 AGATAGATCCATTAGCCTCTCCAC 58.977 45.833 0.00 0.00 0.00 4.02
2356 3300 2.334023 AGATCCATTAGCCTCTCCACC 58.666 52.381 0.00 0.00 0.00 4.61
2357 3301 1.349357 GATCCATTAGCCTCTCCACCC 59.651 57.143 0.00 0.00 0.00 4.61
2358 3302 0.044092 TCCATTAGCCTCTCCACCCA 59.956 55.000 0.00 0.00 0.00 4.51
2359 3303 0.918983 CCATTAGCCTCTCCACCCAA 59.081 55.000 0.00 0.00 0.00 4.12
2360 3304 1.284785 CCATTAGCCTCTCCACCCAAA 59.715 52.381 0.00 0.00 0.00 3.28
2361 3305 2.648059 CATTAGCCTCTCCACCCAAAG 58.352 52.381 0.00 0.00 0.00 2.77
2362 3306 1.742308 TTAGCCTCTCCACCCAAAGT 58.258 50.000 0.00 0.00 0.00 2.66
2363 3307 0.984230 TAGCCTCTCCACCCAAAGTG 59.016 55.000 0.00 0.00 46.83 3.16
2374 3318 2.699954 ACCCAAAGTGATTCTACGCTG 58.300 47.619 0.00 0.00 0.00 5.18
2375 3319 2.009774 CCCAAAGTGATTCTACGCTGG 58.990 52.381 0.00 0.00 0.00 4.85
2376 3320 2.615493 CCCAAAGTGATTCTACGCTGGT 60.615 50.000 0.00 0.00 0.00 4.00
2377 3321 3.369052 CCCAAAGTGATTCTACGCTGGTA 60.369 47.826 0.00 0.00 0.00 3.25
2378 3322 4.250464 CCAAAGTGATTCTACGCTGGTAA 58.750 43.478 0.00 0.00 0.00 2.85
2379 3323 4.693566 CCAAAGTGATTCTACGCTGGTAAA 59.306 41.667 0.00 0.00 0.00 2.01
2380 3324 5.163854 CCAAAGTGATTCTACGCTGGTAAAG 60.164 44.000 0.00 0.00 0.00 1.85
2396 3340 6.472686 TGGTAAAGCAACCTTACAAATTGT 57.527 33.333 3.43 3.43 40.44 2.71
2397 3341 7.584122 TGGTAAAGCAACCTTACAAATTGTA 57.416 32.000 1.08 1.08 40.44 2.41
2398 3342 7.653647 TGGTAAAGCAACCTTACAAATTGTAG 58.346 34.615 5.94 0.00 40.44 2.74
2399 3343 7.502895 TGGTAAAGCAACCTTACAAATTGTAGA 59.497 33.333 5.94 0.00 40.44 2.59
2400 3344 8.021396 GGTAAAGCAACCTTACAAATTGTAGAG 58.979 37.037 5.94 7.03 33.92 2.43
2401 3345 7.582667 AAAGCAACCTTACAAATTGTAGAGT 57.417 32.000 5.94 5.32 33.92 3.24
2402 3346 6.803154 AGCAACCTTACAAATTGTAGAGTC 57.197 37.500 5.94 0.00 33.92 3.36
2403 3347 5.408604 AGCAACCTTACAAATTGTAGAGTCG 59.591 40.000 5.94 0.00 33.92 4.18
2404 3348 5.178809 GCAACCTTACAAATTGTAGAGTCGT 59.821 40.000 5.94 0.00 33.92 4.34
2405 3349 6.366877 GCAACCTTACAAATTGTAGAGTCGTA 59.633 38.462 5.94 0.00 33.92 3.43
2406 3350 7.095523 GCAACCTTACAAATTGTAGAGTCGTAA 60.096 37.037 5.94 0.00 33.92 3.18
2407 3351 8.932791 CAACCTTACAAATTGTAGAGTCGTAAT 58.067 33.333 5.94 0.00 33.92 1.89
2408 3352 9.498176 AACCTTACAAATTGTAGAGTCGTAATT 57.502 29.630 5.94 0.00 33.92 1.40
2409 3353 9.498176 ACCTTACAAATTGTAGAGTCGTAATTT 57.502 29.630 5.94 8.34 33.92 1.82
2435 3379 9.695526 TTTTATTTGTGAGGATTCATTTGACAG 57.304 29.630 0.00 0.00 35.39 3.51
2436 3380 5.710513 TTTGTGAGGATTCATTTGACAGG 57.289 39.130 0.00 0.00 35.39 4.00
2437 3381 3.689347 TGTGAGGATTCATTTGACAGGG 58.311 45.455 0.00 0.00 35.39 4.45
2438 3382 3.074390 TGTGAGGATTCATTTGACAGGGT 59.926 43.478 0.00 0.00 35.39 4.34
2439 3383 4.082125 GTGAGGATTCATTTGACAGGGTT 58.918 43.478 0.00 0.00 35.39 4.11
2440 3384 4.081406 TGAGGATTCATTTGACAGGGTTG 58.919 43.478 0.00 0.00 0.00 3.77
2441 3385 3.434309 AGGATTCATTTGACAGGGTTGG 58.566 45.455 0.00 0.00 0.00 3.77
2442 3386 2.094026 GGATTCATTTGACAGGGTTGGC 60.094 50.000 0.00 0.00 0.00 4.52
2443 3387 2.079170 TTCATTTGACAGGGTTGGCA 57.921 45.000 0.00 0.00 41.76 4.92
2444 3388 2.307496 TCATTTGACAGGGTTGGCAT 57.693 45.000 0.00 0.00 43.32 4.40
2445 3389 3.448093 TCATTTGACAGGGTTGGCATA 57.552 42.857 0.00 0.00 43.32 3.14
2446 3390 3.772387 TCATTTGACAGGGTTGGCATAA 58.228 40.909 0.00 0.00 43.32 1.90
2447 3391 4.352009 TCATTTGACAGGGTTGGCATAAT 58.648 39.130 0.00 0.00 43.32 1.28
2448 3392 4.160065 TCATTTGACAGGGTTGGCATAATG 59.840 41.667 0.00 9.81 43.32 1.90
2449 3393 3.448093 TTGACAGGGTTGGCATAATGA 57.552 42.857 0.00 0.00 43.32 2.57
2450 3394 3.668141 TGACAGGGTTGGCATAATGAT 57.332 42.857 0.00 0.00 37.44 2.45
2451 3395 4.787135 TGACAGGGTTGGCATAATGATA 57.213 40.909 0.00 0.00 37.44 2.15
2452 3396 4.460263 TGACAGGGTTGGCATAATGATAC 58.540 43.478 0.00 0.00 37.44 2.24
2453 3397 4.080072 TGACAGGGTTGGCATAATGATACA 60.080 41.667 0.00 0.00 37.44 2.29
2454 3398 5.065613 ACAGGGTTGGCATAATGATACAT 57.934 39.130 0.00 0.00 0.00 2.29
2455 3399 5.457686 ACAGGGTTGGCATAATGATACATT 58.542 37.500 0.00 0.00 0.00 2.71
2456 3400 6.609876 ACAGGGTTGGCATAATGATACATTA 58.390 36.000 6.65 6.65 0.00 1.90
2457 3401 6.716628 ACAGGGTTGGCATAATGATACATTAG 59.283 38.462 9.47 4.44 0.00 1.73
2458 3402 6.716628 CAGGGTTGGCATAATGATACATTAGT 59.283 38.462 9.47 0.00 0.00 2.24
2459 3403 7.882791 CAGGGTTGGCATAATGATACATTAGTA 59.117 37.037 9.47 0.00 34.10 1.82
2460 3404 8.103305 AGGGTTGGCATAATGATACATTAGTAG 58.897 37.037 9.47 4.57 32.86 2.57
2461 3405 8.100791 GGGTTGGCATAATGATACATTAGTAGA 58.899 37.037 9.47 0.00 32.86 2.59
2462 3406 9.502091 GGTTGGCATAATGATACATTAGTAGAA 57.498 33.333 9.47 0.20 32.86 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.013050 TGTCTTCACACCATGAACAAACA 58.987 39.130 0.00 0.00 42.62 2.83
45 46 3.648339 TGTTCTTCCAAGCTTCATTGC 57.352 42.857 0.00 0.00 0.00 3.56
69 70 1.612442 GGGCCAGTCCACTCCTACA 60.612 63.158 4.39 0.00 36.21 2.74
86 87 1.956477 GCCTATGTTAGCCCACATTGG 59.044 52.381 17.09 17.09 46.81 3.16
89 90 2.126882 TCAGCCTATGTTAGCCCACAT 58.873 47.619 3.95 3.95 40.61 3.21
104 105 2.380084 TTGTTAGATCCGTGTCAGCC 57.620 50.000 0.00 0.00 0.00 4.85
107 108 5.462530 TCTTCTTTGTTAGATCCGTGTCA 57.537 39.130 0.00 0.00 31.54 3.58
147 148 3.003480 CACCATCCTCGTCTTTTCCTTC 58.997 50.000 0.00 0.00 0.00 3.46
156 157 6.496338 AATTAAAAGTTCACCATCCTCGTC 57.504 37.500 0.00 0.00 0.00 4.20
182 183 7.009631 CGTCCTATCAACTAAGAAATGACACTG 59.990 40.741 0.00 0.00 0.00 3.66
193 194 4.113354 GGCAGTTCGTCCTATCAACTAAG 58.887 47.826 0.00 0.00 0.00 2.18
226 227 9.398170 CAAATTAACATGTTTCAGTCCTACTTG 57.602 33.333 17.78 3.30 0.00 3.16
228 229 7.724061 ACCAAATTAACATGTTTCAGTCCTACT 59.276 33.333 17.78 0.00 0.00 2.57
283 284 5.809562 GTCACTCATTCTCAGTATTGGTGAG 59.190 44.000 0.00 0.00 42.51 3.51
368 369 7.665690 ACATATTGTTTGGTTTGCATCACTTA 58.334 30.769 0.00 0.00 0.00 2.24
371 372 7.758980 TGATACATATTGTTTGGTTTGCATCAC 59.241 33.333 0.00 0.00 0.00 3.06
373 374 8.700722 TTGATACATATTGTTTGGTTTGCATC 57.299 30.769 0.00 0.00 0.00 3.91
491 496 3.003740 TTGCCTGCAACCATTTTGC 57.996 47.368 0.00 1.95 45.11 3.68
516 521 9.035607 GCTCGTTCTCTAAAAGAATATGAATGA 57.964 33.333 0.00 0.00 45.57 2.57
522 527 8.547967 TTGTTGCTCGTTCTCTAAAAGAATAT 57.452 30.769 0.00 0.00 45.57 1.28
538 545 5.287170 TCATTCTCAAGATTTGTTGCTCG 57.713 39.130 0.00 0.00 0.00 5.03
572 579 0.314302 ATGTAGACTATGCGGCGTCC 59.686 55.000 9.37 0.00 0.00 4.79
574 581 1.029681 TCATGTAGACTATGCGGCGT 58.970 50.000 9.37 0.00 0.00 5.68
576 583 2.821546 TGTTCATGTAGACTATGCGGC 58.178 47.619 0.00 0.00 0.00 6.53
579 586 6.589523 GGAGATGATGTTCATGTAGACTATGC 59.410 42.308 0.00 0.00 37.20 3.14
580 587 7.894708 AGGAGATGATGTTCATGTAGACTATG 58.105 38.462 0.00 0.00 37.20 2.23
589 596 7.797038 TGTTCAATAGGAGATGATGTTCATG 57.203 36.000 0.00 0.00 37.20 3.07
608 615 7.279615 TCAGAGTTTCTAACATTCCTTGTTCA 58.720 34.615 0.00 0.00 45.55 3.18
640 648 7.914871 TGACATAAATGGTCATATTTTCTTGCG 59.085 33.333 0.00 0.00 40.16 4.85
658 666 7.676004 TCCATGTGTCTTAGACTTGACATAAA 58.324 34.615 13.86 4.40 43.75 1.40
659 667 7.239763 TCCATGTGTCTTAGACTTGACATAA 57.760 36.000 13.86 4.70 43.75 1.90
660 668 6.850752 TCCATGTGTCTTAGACTTGACATA 57.149 37.500 13.86 10.59 43.75 2.29
661 669 5.745312 TCCATGTGTCTTAGACTTGACAT 57.255 39.130 13.86 11.65 43.75 3.06
662 670 5.297547 GTTCCATGTGTCTTAGACTTGACA 58.702 41.667 13.86 9.87 40.39 3.58
663 671 4.691216 GGTTCCATGTGTCTTAGACTTGAC 59.309 45.833 13.86 4.29 33.15 3.18
664 672 4.593206 AGGTTCCATGTGTCTTAGACTTGA 59.407 41.667 13.86 0.67 33.15 3.02
674 682 2.505819 AGATGGGTAGGTTCCATGTGTC 59.494 50.000 0.00 0.00 44.34 3.67
677 685 2.845659 TCAGATGGGTAGGTTCCATGT 58.154 47.619 0.00 0.00 44.34 3.21
681 689 5.241728 GCAATAATTCAGATGGGTAGGTTCC 59.758 44.000 0.00 0.00 0.00 3.62
682 690 5.241728 GGCAATAATTCAGATGGGTAGGTTC 59.758 44.000 0.00 0.00 0.00 3.62
684 692 4.167892 TGGCAATAATTCAGATGGGTAGGT 59.832 41.667 0.00 0.00 0.00 3.08
685 693 4.520492 GTGGCAATAATTCAGATGGGTAGG 59.480 45.833 0.00 0.00 0.00 3.18
686 694 4.214119 CGTGGCAATAATTCAGATGGGTAG 59.786 45.833 0.00 0.00 0.00 3.18
687 695 4.133820 CGTGGCAATAATTCAGATGGGTA 58.866 43.478 0.00 0.00 0.00 3.69
688 696 2.951642 CGTGGCAATAATTCAGATGGGT 59.048 45.455 0.00 0.00 0.00 4.51
716 938 0.546598 ACTATCAGGGGCCTTTTCGG 59.453 55.000 0.84 0.00 0.00 4.30
717 939 1.806623 CGACTATCAGGGGCCTTTTCG 60.807 57.143 0.84 0.00 0.00 3.46
727 949 2.031870 TCCATGTCACCGACTATCAGG 58.968 52.381 0.00 0.00 33.15 3.86
728 950 2.541794 CGTCCATGTCACCGACTATCAG 60.542 54.545 0.00 0.00 33.15 2.90
729 951 1.404035 CGTCCATGTCACCGACTATCA 59.596 52.381 0.00 0.00 33.15 2.15
734 956 2.813908 GGCGTCCATGTCACCGAC 60.814 66.667 0.00 0.00 0.00 4.79
762 1054 0.687427 AGCCAAACAAACCTGTGCCT 60.687 50.000 0.00 0.00 35.37 4.75
767 1059 2.204237 GAGCAAAGCCAAACAAACCTG 58.796 47.619 0.00 0.00 0.00 4.00
796 1101 3.365868 CCGAGTTCGAAATTGAATGCCAA 60.366 43.478 14.29 0.00 43.02 4.52
806 1111 2.038033 TGGAGTTTCCCGAGTTCGAAAT 59.962 45.455 0.00 0.00 36.51 2.17
841 1146 2.824041 GGCCATGGTACCGTGCAG 60.824 66.667 26.22 15.76 0.00 4.41
886 1191 1.189752 ATGCGGCTATGGATCGAGAT 58.810 50.000 0.00 0.00 0.00 2.75
898 1203 1.814772 CTCCAGCTAGCTATGCGGCT 61.815 60.000 18.86 0.00 45.29 5.52
905 1210 2.640316 TCGATGTCTCCAGCTAGCTA 57.360 50.000 18.86 1.19 0.00 3.32
909 1214 2.256117 TCGATCGATGTCTCCAGCTA 57.744 50.000 15.15 0.00 0.00 3.32
911 1216 1.268079 TGATCGATCGATGTCTCCAGC 59.732 52.381 33.86 17.22 34.60 4.85
912 1217 3.632855 TTGATCGATCGATGTCTCCAG 57.367 47.619 33.86 0.00 34.60 3.86
914 1219 3.122613 GCAATTGATCGATCGATGTCTCC 59.877 47.826 33.86 19.31 34.60 3.71
915 1220 3.737774 TGCAATTGATCGATCGATGTCTC 59.262 43.478 33.86 20.78 34.60 3.36
945 1267 3.315765 AAAAAGTGGCGACCGATCA 57.684 47.368 0.00 0.00 0.00 2.92
1118 1440 3.467119 CGACGTGGCGAGAAACCG 61.467 66.667 0.00 0.00 0.00 4.44
1137 1462 1.375326 GCCTTCGGGGATATCCACC 59.625 63.158 23.27 19.01 35.50 4.61
1159 1484 1.454370 GAATCGTCGTCGCAGTCGTC 61.454 60.000 0.00 0.00 40.43 4.20
1245 1579 2.872515 CGTGTACGCAACCAACGCA 61.873 57.895 7.29 0.00 0.00 5.24
1390 1724 0.041238 TCCCTGTCCTCGTCTTCCAT 59.959 55.000 0.00 0.00 0.00 3.41
1428 1763 3.822192 CCGACGTCGAGCCCATCA 61.822 66.667 37.65 0.00 43.02 3.07
1478 1818 6.525578 ACGTCTTCACATATTCCACTCTTA 57.474 37.500 0.00 0.00 0.00 2.10
1482 1822 7.926555 CCTAATTACGTCTTCACATATTCCACT 59.073 37.037 0.00 0.00 0.00 4.00
1511 1852 3.118038 ACAACTCAAAGCACCTTCCTGTA 60.118 43.478 0.00 0.00 0.00 2.74
1513 1854 2.291741 GACAACTCAAAGCACCTTCCTG 59.708 50.000 0.00 0.00 0.00 3.86
1515 1856 1.264288 CGACAACTCAAAGCACCTTCC 59.736 52.381 0.00 0.00 0.00 3.46
1516 1857 1.334149 GCGACAACTCAAAGCACCTTC 60.334 52.381 0.00 0.00 0.00 3.46
1519 1860 0.040958 CAGCGACAACTCAAAGCACC 60.041 55.000 0.00 0.00 0.00 5.01
1526 1942 0.468226 AACCTTCCAGCGACAACTCA 59.532 50.000 0.00 0.00 0.00 3.41
1534 1950 5.567138 AAAGATTCATAAACCTTCCAGCG 57.433 39.130 0.00 0.00 0.00 5.18
1595 2011 7.943447 AGCATTTCATATCTTAGCTTCCAATCT 59.057 33.333 0.00 0.00 0.00 2.40
1598 2014 6.830324 ACAGCATTTCATATCTTAGCTTCCAA 59.170 34.615 0.00 0.00 0.00 3.53
1599 2015 6.359804 ACAGCATTTCATATCTTAGCTTCCA 58.640 36.000 0.00 0.00 0.00 3.53
1601 2017 8.830580 TGTTACAGCATTTCATATCTTAGCTTC 58.169 33.333 0.00 0.00 0.00 3.86
1602 2018 8.737168 TGTTACAGCATTTCATATCTTAGCTT 57.263 30.769 0.00 0.00 0.00 3.74
1603 2019 8.737168 TTGTTACAGCATTTCATATCTTAGCT 57.263 30.769 0.00 0.00 0.00 3.32
1631 2053 9.800433 CAGAAATTTACATTGCCAACATGTATA 57.200 29.630 0.00 0.00 31.75 1.47
1667 2089 5.642063 CACTTGGAACACCTGAATAATACGT 59.358 40.000 0.00 0.00 39.29 3.57
1825 2729 1.660560 CCAAGGAGGGCAAATCGCAG 61.661 60.000 0.00 0.00 45.17 5.18
1850 2788 0.675522 CGGTTTAGGGTTGGCATCGT 60.676 55.000 0.00 0.00 0.00 3.73
1865 2803 4.379243 CGTGAGCAGCCTCCGGTT 62.379 66.667 0.00 0.00 37.29 4.44
1924 2862 4.143333 AGGATGTCCGCCGTTCCG 62.143 66.667 0.00 0.00 42.08 4.30
2001 2942 2.284405 ATTGACCGTCCGACCCCT 60.284 61.111 0.00 0.00 0.00 4.79
2156 3100 2.009051 CAAGCCTGCGTACATTCATCA 58.991 47.619 0.00 0.00 0.00 3.07
2242 3186 5.438761 AACATGAAACTAGTGTTTGCTCC 57.561 39.130 0.00 0.00 45.36 4.70
2269 3213 9.362151 ACTTCCTGATGTGAAAAAGGTTAATAA 57.638 29.630 0.00 0.00 0.00 1.40
2270 3214 8.934023 ACTTCCTGATGTGAAAAAGGTTAATA 57.066 30.769 0.00 0.00 0.00 0.98
2271 3215 7.839680 ACTTCCTGATGTGAAAAAGGTTAAT 57.160 32.000 0.00 0.00 0.00 1.40
2272 3216 7.447238 CCTACTTCCTGATGTGAAAAAGGTTAA 59.553 37.037 0.00 0.00 0.00 2.01
2273 3217 6.940298 CCTACTTCCTGATGTGAAAAAGGTTA 59.060 38.462 0.00 0.00 0.00 2.85
2274 3218 5.770162 CCTACTTCCTGATGTGAAAAAGGTT 59.230 40.000 0.00 0.00 0.00 3.50
2275 3219 5.316987 CCTACTTCCTGATGTGAAAAAGGT 58.683 41.667 0.00 0.00 0.00 3.50
2276 3220 4.702131 CCCTACTTCCTGATGTGAAAAAGG 59.298 45.833 0.00 0.00 0.00 3.11
2277 3221 5.412904 GTCCCTACTTCCTGATGTGAAAAAG 59.587 44.000 0.00 0.00 0.00 2.27
2278 3222 5.163141 TGTCCCTACTTCCTGATGTGAAAAA 60.163 40.000 0.00 0.00 0.00 1.94
2279 3223 4.349636 TGTCCCTACTTCCTGATGTGAAAA 59.650 41.667 0.00 0.00 0.00 2.29
2280 3224 3.907474 TGTCCCTACTTCCTGATGTGAAA 59.093 43.478 0.00 0.00 0.00 2.69
2281 3225 3.516586 TGTCCCTACTTCCTGATGTGAA 58.483 45.455 0.00 0.00 0.00 3.18
2282 3226 3.184382 TGTCCCTACTTCCTGATGTGA 57.816 47.619 0.00 0.00 0.00 3.58
2283 3227 3.261897 ACTTGTCCCTACTTCCTGATGTG 59.738 47.826 0.00 0.00 0.00 3.21
2284 3228 3.261897 CACTTGTCCCTACTTCCTGATGT 59.738 47.826 0.00 0.00 0.00 3.06
2285 3229 3.515502 TCACTTGTCCCTACTTCCTGATG 59.484 47.826 0.00 0.00 0.00 3.07
2286 3230 3.772025 CTCACTTGTCCCTACTTCCTGAT 59.228 47.826 0.00 0.00 0.00 2.90
2287 3231 3.165875 CTCACTTGTCCCTACTTCCTGA 58.834 50.000 0.00 0.00 0.00 3.86
2288 3232 3.056465 GTCTCACTTGTCCCTACTTCCTG 60.056 52.174 0.00 0.00 0.00 3.86
2289 3233 3.166679 GTCTCACTTGTCCCTACTTCCT 58.833 50.000 0.00 0.00 0.00 3.36
2290 3234 2.897969 TGTCTCACTTGTCCCTACTTCC 59.102 50.000 0.00 0.00 0.00 3.46
2291 3235 4.810191 ATGTCTCACTTGTCCCTACTTC 57.190 45.455 0.00 0.00 0.00 3.01
2292 3236 4.348168 ACAATGTCTCACTTGTCCCTACTT 59.652 41.667 0.00 0.00 29.85 2.24
2293 3237 3.904339 ACAATGTCTCACTTGTCCCTACT 59.096 43.478 0.00 0.00 29.85 2.57
2294 3238 4.273148 ACAATGTCTCACTTGTCCCTAC 57.727 45.455 0.00 0.00 29.85 3.18
2295 3239 4.836175 TGTACAATGTCTCACTTGTCCCTA 59.164 41.667 0.00 0.00 36.92 3.53
2296 3240 3.646162 TGTACAATGTCTCACTTGTCCCT 59.354 43.478 0.00 0.00 36.92 4.20
2297 3241 3.746492 GTGTACAATGTCTCACTTGTCCC 59.254 47.826 0.00 0.00 36.92 4.46
2298 3242 3.746492 GGTGTACAATGTCTCACTTGTCC 59.254 47.826 16.55 2.23 36.92 4.02
2299 3243 4.632153 AGGTGTACAATGTCTCACTTGTC 58.368 43.478 16.55 5.22 36.92 3.18
2300 3244 4.689612 AGGTGTACAATGTCTCACTTGT 57.310 40.909 16.55 1.85 38.95 3.16
2301 3245 4.452455 GGAAGGTGTACAATGTCTCACTTG 59.548 45.833 16.55 0.00 0.00 3.16
2302 3246 4.102524 TGGAAGGTGTACAATGTCTCACTT 59.897 41.667 16.55 9.75 0.00 3.16
2303 3247 3.646162 TGGAAGGTGTACAATGTCTCACT 59.354 43.478 16.55 3.53 0.00 3.41
2304 3248 4.002906 TGGAAGGTGTACAATGTCTCAC 57.997 45.455 0.00 11.30 0.00 3.51
2305 3249 4.908601 ATGGAAGGTGTACAATGTCTCA 57.091 40.909 0.00 0.00 0.00 3.27
2327 3271 9.600432 GGAGAGGCTAATGGATCTATCTATAAT 57.400 37.037 0.00 0.00 0.00 1.28
2328 3272 8.569596 TGGAGAGGCTAATGGATCTATCTATAA 58.430 37.037 0.00 0.00 0.00 0.98
2329 3273 8.001875 GTGGAGAGGCTAATGGATCTATCTATA 58.998 40.741 0.00 0.00 0.00 1.31
2330 3274 6.838612 GTGGAGAGGCTAATGGATCTATCTAT 59.161 42.308 0.00 0.00 0.00 1.98
2331 3275 6.191315 GTGGAGAGGCTAATGGATCTATCTA 58.809 44.000 0.00 0.00 0.00 1.98
2332 3276 5.022787 GTGGAGAGGCTAATGGATCTATCT 58.977 45.833 0.00 0.00 0.00 1.98
2333 3277 4.161377 GGTGGAGAGGCTAATGGATCTATC 59.839 50.000 0.00 0.00 0.00 2.08
2334 3278 4.100373 GGTGGAGAGGCTAATGGATCTAT 58.900 47.826 0.00 0.00 0.00 1.98
2335 3279 3.511477 GGTGGAGAGGCTAATGGATCTA 58.489 50.000 0.00 0.00 0.00 1.98
2336 3280 2.334023 GGTGGAGAGGCTAATGGATCT 58.666 52.381 0.00 0.00 0.00 2.75
2337 3281 1.349357 GGGTGGAGAGGCTAATGGATC 59.651 57.143 0.00 0.00 0.00 3.36
2338 3282 1.345422 TGGGTGGAGAGGCTAATGGAT 60.345 52.381 0.00 0.00 0.00 3.41
2339 3283 0.044092 TGGGTGGAGAGGCTAATGGA 59.956 55.000 0.00 0.00 0.00 3.41
2340 3284 0.918983 TTGGGTGGAGAGGCTAATGG 59.081 55.000 0.00 0.00 0.00 3.16
2341 3285 2.025887 ACTTTGGGTGGAGAGGCTAATG 60.026 50.000 0.00 0.00 0.00 1.90
2342 3286 2.025887 CACTTTGGGTGGAGAGGCTAAT 60.026 50.000 0.00 0.00 41.90 1.73
2343 3287 1.351017 CACTTTGGGTGGAGAGGCTAA 59.649 52.381 0.00 0.00 41.90 3.09
2344 3288 0.984230 CACTTTGGGTGGAGAGGCTA 59.016 55.000 0.00 0.00 41.90 3.93
2345 3289 0.768221 TCACTTTGGGTGGAGAGGCT 60.768 55.000 0.00 0.00 45.38 4.58
2346 3290 0.329596 ATCACTTTGGGTGGAGAGGC 59.670 55.000 0.00 0.00 45.38 4.70
2347 3291 2.307098 AGAATCACTTTGGGTGGAGAGG 59.693 50.000 0.00 0.00 45.38 3.69
2348 3292 3.710209 AGAATCACTTTGGGTGGAGAG 57.290 47.619 0.00 0.00 45.38 3.20
2349 3293 3.056107 CGTAGAATCACTTTGGGTGGAGA 60.056 47.826 0.00 0.00 45.38 3.71
2350 3294 3.262420 CGTAGAATCACTTTGGGTGGAG 58.738 50.000 0.00 0.00 45.38 3.86
2351 3295 2.614481 GCGTAGAATCACTTTGGGTGGA 60.614 50.000 0.00 0.00 45.38 4.02
2352 3296 1.737793 GCGTAGAATCACTTTGGGTGG 59.262 52.381 0.00 0.00 45.38 4.61
2353 3297 2.416547 CAGCGTAGAATCACTTTGGGTG 59.583 50.000 0.00 0.00 46.60 4.61
2354 3298 2.615493 CCAGCGTAGAATCACTTTGGGT 60.615 50.000 0.00 0.00 0.00 4.51
2355 3299 2.009774 CCAGCGTAGAATCACTTTGGG 58.990 52.381 0.00 0.00 0.00 4.12
2356 3300 2.699954 ACCAGCGTAGAATCACTTTGG 58.300 47.619 0.00 0.00 0.00 3.28
2357 3301 5.671329 GCTTTACCAGCGTAGAATCACTTTG 60.671 44.000 0.00 0.00 39.29 2.77
2358 3302 4.392138 GCTTTACCAGCGTAGAATCACTTT 59.608 41.667 0.00 0.00 39.29 2.66
2359 3303 3.933332 GCTTTACCAGCGTAGAATCACTT 59.067 43.478 0.00 0.00 39.29 3.16
2360 3304 3.522553 GCTTTACCAGCGTAGAATCACT 58.477 45.455 0.00 0.00 39.29 3.41
2361 3305 3.927552 GCTTTACCAGCGTAGAATCAC 57.072 47.619 0.00 0.00 39.29 3.06
2371 3315 7.736011 TACAATTTGTAAGGTTGCTTTACCAGC 60.736 37.037 6.79 0.00 40.82 4.85
2372 3316 6.512297 ACAATTTGTAAGGTTGCTTTACCAG 58.488 36.000 0.00 0.00 40.82 4.00
2373 3317 6.472686 ACAATTTGTAAGGTTGCTTTACCA 57.527 33.333 0.00 0.00 40.82 3.25
2374 3318 7.878036 TCTACAATTTGTAAGGTTGCTTTACC 58.122 34.615 10.32 0.00 38.53 2.85
2375 3319 8.565416 ACTCTACAATTTGTAAGGTTGCTTTAC 58.435 33.333 10.32 0.00 31.67 2.01
2376 3320 8.685838 ACTCTACAATTTGTAAGGTTGCTTTA 57.314 30.769 10.32 0.00 31.67 1.85
2377 3321 7.519970 CGACTCTACAATTTGTAAGGTTGCTTT 60.520 37.037 10.32 0.00 31.67 3.51
2378 3322 6.073222 CGACTCTACAATTTGTAAGGTTGCTT 60.073 38.462 10.32 0.00 31.67 3.91
2379 3323 5.408604 CGACTCTACAATTTGTAAGGTTGCT 59.591 40.000 10.32 0.00 31.67 3.91
2380 3324 5.178809 ACGACTCTACAATTTGTAAGGTTGC 59.821 40.000 18.68 8.24 31.67 4.17
2381 3325 6.780706 ACGACTCTACAATTTGTAAGGTTG 57.219 37.500 10.32 15.04 31.67 3.77
2382 3326 9.498176 AATTACGACTCTACAATTTGTAAGGTT 57.502 29.630 10.32 2.38 31.67 3.50
2383 3327 9.498176 AAATTACGACTCTACAATTTGTAAGGT 57.502 29.630 10.32 10.95 31.67 3.50
2409 3353 9.695526 CTGTCAAATGAATCCTCACAAATAAAA 57.304 29.630 0.00 0.00 33.30 1.52
2410 3354 8.306038 CCTGTCAAATGAATCCTCACAAATAAA 58.694 33.333 0.00 0.00 33.30 1.40
2411 3355 7.093814 CCCTGTCAAATGAATCCTCACAAATAA 60.094 37.037 0.00 0.00 33.30 1.40
2412 3356 6.377996 CCCTGTCAAATGAATCCTCACAAATA 59.622 38.462 0.00 0.00 33.30 1.40
2413 3357 5.186409 CCCTGTCAAATGAATCCTCACAAAT 59.814 40.000 0.00 0.00 33.30 2.32
2414 3358 4.523943 CCCTGTCAAATGAATCCTCACAAA 59.476 41.667 0.00 0.00 33.30 2.83
2415 3359 4.081406 CCCTGTCAAATGAATCCTCACAA 58.919 43.478 0.00 0.00 33.30 3.33
2416 3360 3.074390 ACCCTGTCAAATGAATCCTCACA 59.926 43.478 0.00 0.00 33.30 3.58
2417 3361 3.690460 ACCCTGTCAAATGAATCCTCAC 58.310 45.455 0.00 0.00 33.30 3.51
2418 3362 4.081406 CAACCCTGTCAAATGAATCCTCA 58.919 43.478 0.00 0.00 35.56 3.86
2419 3363 3.445096 CCAACCCTGTCAAATGAATCCTC 59.555 47.826 0.00 0.00 0.00 3.71
2420 3364 3.434309 CCAACCCTGTCAAATGAATCCT 58.566 45.455 0.00 0.00 0.00 3.24
2421 3365 2.094026 GCCAACCCTGTCAAATGAATCC 60.094 50.000 0.00 0.00 0.00 3.01
2422 3366 2.562298 TGCCAACCCTGTCAAATGAATC 59.438 45.455 0.00 0.00 0.00 2.52
2423 3367 2.607499 TGCCAACCCTGTCAAATGAAT 58.393 42.857 0.00 0.00 0.00 2.57
2424 3368 2.079170 TGCCAACCCTGTCAAATGAA 57.921 45.000 0.00 0.00 0.00 2.57
2425 3369 2.307496 ATGCCAACCCTGTCAAATGA 57.693 45.000 0.00 0.00 0.00 2.57
2426 3370 4.160065 TCATTATGCCAACCCTGTCAAATG 59.840 41.667 0.00 0.00 0.00 2.32
2427 3371 4.352009 TCATTATGCCAACCCTGTCAAAT 58.648 39.130 0.00 0.00 0.00 2.32
2428 3372 3.772387 TCATTATGCCAACCCTGTCAAA 58.228 40.909 0.00 0.00 0.00 2.69
2429 3373 3.448093 TCATTATGCCAACCCTGTCAA 57.552 42.857 0.00 0.00 0.00 3.18
2430 3374 3.668141 ATCATTATGCCAACCCTGTCA 57.332 42.857 0.00 0.00 0.00 3.58
2431 3375 4.460263 TGTATCATTATGCCAACCCTGTC 58.540 43.478 0.00 0.00 0.00 3.51
2432 3376 4.518278 TGTATCATTATGCCAACCCTGT 57.482 40.909 0.00 0.00 0.00 4.00
2433 3377 6.716628 ACTAATGTATCATTATGCCAACCCTG 59.283 38.462 3.23 0.00 0.00 4.45
2434 3378 6.852404 ACTAATGTATCATTATGCCAACCCT 58.148 36.000 3.23 0.00 0.00 4.34
2435 3379 8.100791 TCTACTAATGTATCATTATGCCAACCC 58.899 37.037 3.23 0.00 0.00 4.11
2436 3380 9.502091 TTCTACTAATGTATCATTATGCCAACC 57.498 33.333 3.23 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.