Multiple sequence alignment - TraesCS6B01G122000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G122000 chr6B 100.000 3511 0 0 1 3511 116748729 116745219 0.000000e+00 6484
1 TraesCS6B01G122000 chr6B 88.557 603 57 12 1 597 90105543 90106139 0.000000e+00 721
2 TraesCS6B01G122000 chr6B 92.705 329 12 8 3185 3510 116127022 116127341 6.860000e-127 464
3 TraesCS6B01G122000 chr6D 90.534 2229 112 41 863 3031 54238189 54240378 0.000000e+00 2856
4 TraesCS6B01G122000 chr6D 83.663 606 88 9 2 603 448819984 448820582 8.510000e-156 560
5 TraesCS6B01G122000 chr6D 85.286 367 24 13 1877 2241 54021622 54021960 5.580000e-93 351
6 TraesCS6B01G122000 chr6A 88.383 2436 178 48 801 3188 61007991 61005613 0.000000e+00 2833
7 TraesCS6B01G122000 chr2B 85.438 1916 182 62 931 2774 468553082 468551192 0.000000e+00 1903
8 TraesCS6B01G122000 chr2A 86.966 1335 110 35 1478 2781 533831574 533830273 0.000000e+00 1443
9 TraesCS6B01G122000 chr2A 85.362 608 80 9 2 604 398856683 398857286 3.850000e-174 621
10 TraesCS6B01G122000 chr2A 85.197 608 81 9 2 604 398458890 398458287 1.790000e-172 616
11 TraesCS6B01G122000 chr2A 88.413 397 27 8 933 1317 533837317 533836928 8.880000e-126 460
12 TraesCS6B01G122000 chr2A 93.750 160 10 0 1313 1472 533836898 533836739 1.260000e-59 241
13 TraesCS6B01G122000 chr2D 88.341 892 73 17 1896 2782 395557798 395556933 0.000000e+00 1042
14 TraesCS6B01G122000 chr2D 93.117 523 36 0 1319 1841 395558400 395557878 0.000000e+00 767
15 TraesCS6B01G122000 chr2D 90.000 310 24 5 934 1237 395558801 395558493 9.130000e-106 394
16 TraesCS6B01G122000 chr1A 88.119 606 67 5 1 603 70976073 70975470 0.000000e+00 715
17 TraesCS6B01G122000 chr7B 86.184 608 74 10 2 604 99138277 99137675 0.000000e+00 649
18 TraesCS6B01G122000 chr7B 94.848 330 12 3 3185 3511 605769928 605769601 8.690000e-141 510
19 TraesCS6B01G122000 chr7B 94.242 330 15 4 3185 3511 661448391 661448063 5.230000e-138 501
20 TraesCS6B01G122000 chr7B 94.225 329 17 2 3184 3511 693313595 693313922 5.230000e-138 501
21 TraesCS6B01G122000 chr7B 92.355 327 22 3 3187 3511 57464265 57464590 2.470000e-126 462
22 TraesCS6B01G122000 chr7B 91.768 328 19 5 3187 3511 63549862 63549540 1.920000e-122 449
23 TraesCS6B01G122000 chr5D 85.810 599 75 9 2 597 390422542 390421951 8.270000e-176 627
24 TraesCS6B01G122000 chr5A 85.314 606 81 8 2 603 673835338 673834737 1.380000e-173 619
25 TraesCS6B01G122000 chr3A 84.236 609 77 17 2 603 96000675 96000079 3.040000e-160 575
26 TraesCS6B01G122000 chr5B 95.181 332 11 4 3184 3511 314287610 314287940 1.440000e-143 520
27 TraesCS6B01G122000 chr3B 95.122 328 10 4 3187 3511 636257562 636257238 2.420000e-141 512
28 TraesCS6B01G122000 chr4B 92.239 335 18 6 3180 3511 605504008 605504337 5.310000e-128 468


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G122000 chr6B 116745219 116748729 3510 True 6484.000000 6484 100.0000 1 3511 1 chr6B.!!$R1 3510
1 TraesCS6B01G122000 chr6B 90105543 90106139 596 False 721.000000 721 88.5570 1 597 1 chr6B.!!$F1 596
2 TraesCS6B01G122000 chr6D 54238189 54240378 2189 False 2856.000000 2856 90.5340 863 3031 1 chr6D.!!$F2 2168
3 TraesCS6B01G122000 chr6D 448819984 448820582 598 False 560.000000 560 83.6630 2 603 1 chr6D.!!$F3 601
4 TraesCS6B01G122000 chr6A 61005613 61007991 2378 True 2833.000000 2833 88.3830 801 3188 1 chr6A.!!$R1 2387
5 TraesCS6B01G122000 chr2B 468551192 468553082 1890 True 1903.000000 1903 85.4380 931 2774 1 chr2B.!!$R1 1843
6 TraesCS6B01G122000 chr2A 533830273 533831574 1301 True 1443.000000 1443 86.9660 1478 2781 1 chr2A.!!$R2 1303
7 TraesCS6B01G122000 chr2A 398856683 398857286 603 False 621.000000 621 85.3620 2 604 1 chr2A.!!$F1 602
8 TraesCS6B01G122000 chr2A 398458287 398458890 603 True 616.000000 616 85.1970 2 604 1 chr2A.!!$R1 602
9 TraesCS6B01G122000 chr2A 533836739 533837317 578 True 350.500000 460 91.0815 933 1472 2 chr2A.!!$R3 539
10 TraesCS6B01G122000 chr2D 395556933 395558801 1868 True 734.333333 1042 90.4860 934 2782 3 chr2D.!!$R1 1848
11 TraesCS6B01G122000 chr1A 70975470 70976073 603 True 715.000000 715 88.1190 1 603 1 chr1A.!!$R1 602
12 TraesCS6B01G122000 chr7B 99137675 99138277 602 True 649.000000 649 86.1840 2 604 1 chr7B.!!$R2 602
13 TraesCS6B01G122000 chr5D 390421951 390422542 591 True 627.000000 627 85.8100 2 597 1 chr5D.!!$R1 595
14 TraesCS6B01G122000 chr5A 673834737 673835338 601 True 619.000000 619 85.3140 2 603 1 chr5A.!!$R1 601
15 TraesCS6B01G122000 chr3A 96000079 96000675 596 True 575.000000 575 84.2360 2 603 1 chr3A.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 797 0.110238 CGCCACTGATTGTCCGTTTG 60.110 55.0 0.0 0.0 0.0 2.93 F
787 798 0.951558 GCCACTGATTGTCCGTTTGT 59.048 50.0 0.0 0.0 0.0 2.83 F
1062 1089 1.149101 TGTTCCTTGCCTTCTCCCTT 58.851 50.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2268 0.321919 GCATGCTCAGTCAGACCCAA 60.322 55.0 11.37 0.0 0.00 4.12 R
2297 2428 0.819259 ACTGCATGTTGACGTTGCCT 60.819 50.0 6.70 0.0 0.00 4.75 R
2925 3064 1.548081 TGCCAGCATGCAACTAACAT 58.452 45.0 21.98 0.0 38.56 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.775561 GGGGAGATGATAGAGTGTGTTTTATTT 59.224 37.037 0.00 0.00 0.00 1.40
107 108 3.837731 TCTGTGTTATCCACTGACCATGA 59.162 43.478 0.00 0.00 44.26 3.07
137 138 8.568676 TTTATGTGGGAAAATTTCTATGTCGA 57.431 30.769 5.65 0.00 0.00 4.20
146 147 2.203800 TTCTATGTCGATGGTCGCAC 57.796 50.000 0.00 0.00 40.21 5.34
295 300 8.815912 AGCCTAGTCAAAATCATAAACCAAATT 58.184 29.630 0.00 0.00 0.00 1.82
461 469 9.489084 AATTGTGAGGCCTTAAAAATTAGAAAC 57.511 29.630 6.77 0.00 0.00 2.78
462 470 7.833285 TGTGAGGCCTTAAAAATTAGAAACT 57.167 32.000 6.77 0.00 0.00 2.66
510 519 6.150641 TGAATGAGAGAGCTTTGAGAAATTGG 59.849 38.462 0.00 0.00 0.00 3.16
512 521 6.114187 TGAGAGAGCTTTGAGAAATTGGTA 57.886 37.500 0.00 0.00 0.00 3.25
516 525 7.680730 AGAGAGCTTTGAGAAATTGGTAACTA 58.319 34.615 0.00 0.00 37.61 2.24
526 536 9.010029 TGAGAAATTGGTAACTAGTCAAAATCC 57.990 33.333 0.00 0.00 37.61 3.01
533 543 4.345859 AACTAGTCAAAATCCGGTGACA 57.654 40.909 21.12 9.27 45.40 3.58
536 546 2.218603 AGTCAAAATCCGGTGACACAC 58.781 47.619 21.12 5.64 45.40 3.82
537 547 1.944024 GTCAAAATCCGGTGACACACA 59.056 47.619 15.90 0.00 43.02 3.72
569 580 5.128335 GGAGATCTCAATTGAATTTGGGCTT 59.872 40.000 23.85 0.00 0.00 4.35
605 616 8.934697 AGGGAGCTTAGTGTTATAAATGATACA 58.065 33.333 0.00 0.00 0.00 2.29
606 617 9.555727 GGGAGCTTAGTGTTATAAATGATACAA 57.444 33.333 0.00 0.00 0.00 2.41
614 625 9.177608 AGTGTTATAAATGATACAATGTGTGCT 57.822 29.630 0.00 0.00 0.00 4.40
615 626 9.438291 GTGTTATAAATGATACAATGTGTGCTC 57.562 33.333 0.00 0.00 0.00 4.26
616 627 9.394767 TGTTATAAATGATACAATGTGTGCTCT 57.605 29.630 0.00 0.00 0.00 4.09
641 652 6.621316 TTTTATTTGTCTTCGGCTGTTACA 57.379 33.333 0.00 0.00 0.00 2.41
642 653 5.856126 TTATTTGTCTTCGGCTGTTACAG 57.144 39.130 8.18 8.18 34.12 2.74
656 667 4.359706 CTGTTACAGCAGAAAAACCAACC 58.640 43.478 0.00 0.00 38.70 3.77
657 668 3.131400 TGTTACAGCAGAAAAACCAACCC 59.869 43.478 0.00 0.00 0.00 4.11
658 669 1.859302 ACAGCAGAAAAACCAACCCA 58.141 45.000 0.00 0.00 0.00 4.51
659 670 2.397597 ACAGCAGAAAAACCAACCCAT 58.602 42.857 0.00 0.00 0.00 4.00
660 671 2.771372 ACAGCAGAAAAACCAACCCATT 59.229 40.909 0.00 0.00 0.00 3.16
661 672 3.964031 ACAGCAGAAAAACCAACCCATTA 59.036 39.130 0.00 0.00 0.00 1.90
662 673 4.592778 ACAGCAGAAAAACCAACCCATTAT 59.407 37.500 0.00 0.00 0.00 1.28
663 674 5.777732 ACAGCAGAAAAACCAACCCATTATA 59.222 36.000 0.00 0.00 0.00 0.98
664 675 6.268847 ACAGCAGAAAAACCAACCCATTATAA 59.731 34.615 0.00 0.00 0.00 0.98
665 676 6.589907 CAGCAGAAAAACCAACCCATTATAAC 59.410 38.462 0.00 0.00 0.00 1.89
666 677 6.496911 AGCAGAAAAACCAACCCATTATAACT 59.503 34.615 0.00 0.00 0.00 2.24
667 678 6.811665 GCAGAAAAACCAACCCATTATAACTC 59.188 38.462 0.00 0.00 0.00 3.01
668 679 7.309805 GCAGAAAAACCAACCCATTATAACTCT 60.310 37.037 0.00 0.00 0.00 3.24
669 680 8.585018 CAGAAAAACCAACCCATTATAACTCTT 58.415 33.333 0.00 0.00 0.00 2.85
670 681 8.803235 AGAAAAACCAACCCATTATAACTCTTC 58.197 33.333 0.00 0.00 0.00 2.87
671 682 7.476540 AAAACCAACCCATTATAACTCTTCC 57.523 36.000 0.00 0.00 0.00 3.46
672 683 5.125367 ACCAACCCATTATAACTCTTCCC 57.875 43.478 0.00 0.00 0.00 3.97
673 684 4.794067 ACCAACCCATTATAACTCTTCCCT 59.206 41.667 0.00 0.00 0.00 4.20
674 685 5.255443 ACCAACCCATTATAACTCTTCCCTT 59.745 40.000 0.00 0.00 0.00 3.95
675 686 5.828328 CCAACCCATTATAACTCTTCCCTTC 59.172 44.000 0.00 0.00 0.00 3.46
676 687 6.353951 CCAACCCATTATAACTCTTCCCTTCT 60.354 42.308 0.00 0.00 0.00 2.85
677 688 6.502074 ACCCATTATAACTCTTCCCTTCTC 57.498 41.667 0.00 0.00 0.00 2.87
678 689 5.369993 ACCCATTATAACTCTTCCCTTCTCC 59.630 44.000 0.00 0.00 0.00 3.71
679 690 5.608860 CCCATTATAACTCTTCCCTTCTCCT 59.391 44.000 0.00 0.00 0.00 3.69
680 691 6.101881 CCCATTATAACTCTTCCCTTCTCCTT 59.898 42.308 0.00 0.00 0.00 3.36
681 692 7.366913 CCCATTATAACTCTTCCCTTCTCCTTT 60.367 40.741 0.00 0.00 0.00 3.11
682 693 8.055790 CCATTATAACTCTTCCCTTCTCCTTTT 58.944 37.037 0.00 0.00 0.00 2.27
683 694 9.114952 CATTATAACTCTTCCCTTCTCCTTTTC 57.885 37.037 0.00 0.00 0.00 2.29
684 695 6.961361 ATAACTCTTCCCTTCTCCTTTTCT 57.039 37.500 0.00 0.00 0.00 2.52
685 696 5.654901 AACTCTTCCCTTCTCCTTTTCTT 57.345 39.130 0.00 0.00 0.00 2.52
686 697 4.979335 ACTCTTCCCTTCTCCTTTTCTTG 58.021 43.478 0.00 0.00 0.00 3.02
687 698 4.413851 ACTCTTCCCTTCTCCTTTTCTTGT 59.586 41.667 0.00 0.00 0.00 3.16
688 699 5.607171 ACTCTTCCCTTCTCCTTTTCTTGTA 59.393 40.000 0.00 0.00 0.00 2.41
689 700 6.115448 TCTTCCCTTCTCCTTTTCTTGTAG 57.885 41.667 0.00 0.00 0.00 2.74
690 701 5.607171 TCTTCCCTTCTCCTTTTCTTGTAGT 59.393 40.000 0.00 0.00 0.00 2.73
691 702 6.785963 TCTTCCCTTCTCCTTTTCTTGTAGTA 59.214 38.462 0.00 0.00 0.00 1.82
692 703 6.356186 TCCCTTCTCCTTTTCTTGTAGTAC 57.644 41.667 0.00 0.00 0.00 2.73
693 704 5.842328 TCCCTTCTCCTTTTCTTGTAGTACA 59.158 40.000 0.00 0.00 0.00 2.90
694 705 6.328148 TCCCTTCTCCTTTTCTTGTAGTACAA 59.672 38.462 14.85 14.85 36.54 2.41
714 725 9.726438 AGTACAAGTGATAAAAAGAGTAATGCT 57.274 29.630 0.00 0.00 0.00 3.79
717 728 9.944376 ACAAGTGATAAAAAGAGTAATGCTAGA 57.056 29.630 0.00 0.00 0.00 2.43
726 737 8.934507 AAAAGAGTAATGCTAGATACACACTC 57.065 34.615 0.00 0.00 34.75 3.51
727 738 7.646548 AAGAGTAATGCTAGATACACACTCA 57.353 36.000 0.00 0.00 35.99 3.41
728 739 7.831691 AGAGTAATGCTAGATACACACTCAT 57.168 36.000 0.00 0.00 35.99 2.90
729 740 8.926092 AGAGTAATGCTAGATACACACTCATA 57.074 34.615 0.00 0.00 35.99 2.15
730 741 8.788806 AGAGTAATGCTAGATACACACTCATAC 58.211 37.037 0.00 0.00 35.99 2.39
731 742 8.465273 AGTAATGCTAGATACACACTCATACA 57.535 34.615 0.00 0.00 0.00 2.29
732 743 8.914011 AGTAATGCTAGATACACACTCATACAA 58.086 33.333 0.00 0.00 0.00 2.41
733 744 9.698309 GTAATGCTAGATACACACTCATACAAT 57.302 33.333 0.00 0.00 0.00 2.71
736 747 9.920133 ATGCTAGATACACACTCATACAATTAG 57.080 33.333 0.00 0.00 0.00 1.73
737 748 7.867909 TGCTAGATACACACTCATACAATTAGC 59.132 37.037 0.00 0.00 0.00 3.09
738 749 8.085296 GCTAGATACACACTCATACAATTAGCT 58.915 37.037 0.00 0.00 0.00 3.32
739 750 9.404348 CTAGATACACACTCATACAATTAGCTG 57.596 37.037 0.00 0.00 0.00 4.24
740 751 7.212976 AGATACACACTCATACAATTAGCTGG 58.787 38.462 0.00 0.00 0.00 4.85
741 752 3.941483 ACACACTCATACAATTAGCTGGC 59.059 43.478 0.00 0.00 0.00 4.85
742 753 3.940852 CACACTCATACAATTAGCTGGCA 59.059 43.478 0.00 0.00 0.00 4.92
743 754 4.577693 CACACTCATACAATTAGCTGGCAT 59.422 41.667 0.00 0.00 0.00 4.40
744 755 4.818546 ACACTCATACAATTAGCTGGCATC 59.181 41.667 0.00 0.00 0.00 3.91
745 756 5.061853 CACTCATACAATTAGCTGGCATCT 58.938 41.667 0.00 0.00 0.00 2.90
746 757 5.530171 CACTCATACAATTAGCTGGCATCTT 59.470 40.000 0.00 0.00 0.00 2.40
747 758 6.039047 CACTCATACAATTAGCTGGCATCTTT 59.961 38.462 0.00 0.00 0.00 2.52
748 759 6.604795 ACTCATACAATTAGCTGGCATCTTTT 59.395 34.615 0.00 0.00 0.00 2.27
749 760 7.775093 ACTCATACAATTAGCTGGCATCTTTTA 59.225 33.333 0.00 0.00 0.00 1.52
750 761 8.158169 TCATACAATTAGCTGGCATCTTTTAG 57.842 34.615 0.00 0.00 0.00 1.85
751 762 7.775093 TCATACAATTAGCTGGCATCTTTTAGT 59.225 33.333 0.00 0.00 0.00 2.24
752 763 6.840780 ACAATTAGCTGGCATCTTTTAGTT 57.159 33.333 0.00 0.00 0.00 2.24
753 764 6.624423 ACAATTAGCTGGCATCTTTTAGTTG 58.376 36.000 0.00 0.00 0.00 3.16
754 765 5.841957 ATTAGCTGGCATCTTTTAGTTGG 57.158 39.130 0.00 0.00 0.00 3.77
755 766 3.439857 AGCTGGCATCTTTTAGTTGGA 57.560 42.857 0.00 0.00 0.00 3.53
756 767 3.350833 AGCTGGCATCTTTTAGTTGGAG 58.649 45.455 0.00 0.00 0.00 3.86
757 768 3.009473 AGCTGGCATCTTTTAGTTGGAGA 59.991 43.478 0.00 0.00 0.00 3.71
758 769 3.950395 GCTGGCATCTTTTAGTTGGAGAT 59.050 43.478 0.00 0.00 0.00 2.75
759 770 5.104360 AGCTGGCATCTTTTAGTTGGAGATA 60.104 40.000 0.00 0.00 0.00 1.98
760 771 5.590259 GCTGGCATCTTTTAGTTGGAGATAA 59.410 40.000 0.00 0.00 0.00 1.75
761 772 6.238593 GCTGGCATCTTTTAGTTGGAGATAAG 60.239 42.308 0.00 0.00 0.00 1.73
762 773 6.122277 TGGCATCTTTTAGTTGGAGATAAGG 58.878 40.000 0.00 0.00 0.00 2.69
763 774 5.532779 GGCATCTTTTAGTTGGAGATAAGGG 59.467 44.000 0.00 0.00 0.00 3.95
764 775 6.357367 GCATCTTTTAGTTGGAGATAAGGGA 58.643 40.000 0.00 0.00 0.00 4.20
765 776 6.484977 GCATCTTTTAGTTGGAGATAAGGGAG 59.515 42.308 0.00 0.00 0.00 4.30
766 777 6.561519 TCTTTTAGTTGGAGATAAGGGAGG 57.438 41.667 0.00 0.00 0.00 4.30
767 778 4.772886 TTTAGTTGGAGATAAGGGAGGC 57.227 45.455 0.00 0.00 0.00 4.70
768 779 1.123928 AGTTGGAGATAAGGGAGGCG 58.876 55.000 0.00 0.00 0.00 5.52
769 780 0.533085 GTTGGAGATAAGGGAGGCGC 60.533 60.000 0.00 0.00 0.00 6.53
770 781 1.696097 TTGGAGATAAGGGAGGCGCC 61.696 60.000 21.89 21.89 0.00 6.53
771 782 2.140792 GGAGATAAGGGAGGCGCCA 61.141 63.158 31.54 6.82 38.95 5.69
772 783 1.069935 GAGATAAGGGAGGCGCCAC 59.930 63.158 31.54 23.95 38.95 5.01
773 784 1.383248 AGATAAGGGAGGCGCCACT 60.383 57.895 31.54 20.70 38.95 4.00
774 785 1.227674 GATAAGGGAGGCGCCACTG 60.228 63.158 31.54 0.00 38.95 3.66
775 786 1.686325 GATAAGGGAGGCGCCACTGA 61.686 60.000 31.54 17.15 38.95 3.41
776 787 1.056700 ATAAGGGAGGCGCCACTGAT 61.057 55.000 31.54 18.70 38.95 2.90
777 788 1.271840 TAAGGGAGGCGCCACTGATT 61.272 55.000 31.54 19.37 38.95 2.57
778 789 2.825836 GGGAGGCGCCACTGATTG 60.826 66.667 31.54 0.00 38.95 2.67
779 790 2.045926 GGAGGCGCCACTGATTGT 60.046 61.111 31.54 4.27 36.34 2.71
780 791 2.109126 GGAGGCGCCACTGATTGTC 61.109 63.158 31.54 14.65 36.34 3.18
781 792 2.045926 AGGCGCCACTGATTGTCC 60.046 61.111 31.54 0.00 0.00 4.02
782 793 3.499737 GGCGCCACTGATTGTCCG 61.500 66.667 24.80 0.00 0.00 4.79
783 794 2.742372 GCGCCACTGATTGTCCGT 60.742 61.111 0.00 0.00 0.00 4.69
784 795 2.325082 GCGCCACTGATTGTCCGTT 61.325 57.895 0.00 0.00 0.00 4.44
785 796 1.852067 GCGCCACTGATTGTCCGTTT 61.852 55.000 0.00 0.00 0.00 3.60
786 797 0.110238 CGCCACTGATTGTCCGTTTG 60.110 55.000 0.00 0.00 0.00 2.93
787 798 0.951558 GCCACTGATTGTCCGTTTGT 59.048 50.000 0.00 0.00 0.00 2.83
788 799 1.336755 GCCACTGATTGTCCGTTTGTT 59.663 47.619 0.00 0.00 0.00 2.83
789 800 2.223711 GCCACTGATTGTCCGTTTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
790 801 3.003897 GCCACTGATTGTCCGTTTGTTTA 59.996 43.478 0.00 0.00 0.00 2.01
791 802 4.498345 GCCACTGATTGTCCGTTTGTTTAA 60.498 41.667 0.00 0.00 0.00 1.52
792 803 5.212194 CCACTGATTGTCCGTTTGTTTAAG 58.788 41.667 0.00 0.00 0.00 1.85
793 804 5.008217 CCACTGATTGTCCGTTTGTTTAAGA 59.992 40.000 0.00 0.00 0.00 2.10
794 805 6.293955 CCACTGATTGTCCGTTTGTTTAAGAT 60.294 38.462 0.00 0.00 0.00 2.40
795 806 7.138736 CACTGATTGTCCGTTTGTTTAAGATT 58.861 34.615 0.00 0.00 0.00 2.40
796 807 8.286800 CACTGATTGTCCGTTTGTTTAAGATTA 58.713 33.333 0.00 0.00 0.00 1.75
797 808 9.010029 ACTGATTGTCCGTTTGTTTAAGATTAT 57.990 29.630 0.00 0.00 0.00 1.28
798 809 9.840427 CTGATTGTCCGTTTGTTTAAGATTATT 57.160 29.630 0.00 0.00 0.00 1.40
799 810 9.619316 TGATTGTCCGTTTGTTTAAGATTATTG 57.381 29.630 0.00 0.00 0.00 1.90
804 815 8.077386 GTCCGTTTGTTTAAGATTATTGGACAA 58.923 33.333 0.00 0.00 40.44 3.18
806 817 9.418045 CCGTTTGTTTAAGATTATTGGACAAAT 57.582 29.630 0.00 0.00 37.69 2.32
827 838 7.880713 ACAAATAAACCCAACAAGAAACAAACT 59.119 29.630 0.00 0.00 0.00 2.66
832 843 5.506708 ACCCAACAAGAAACAAACTCTAGT 58.493 37.500 0.00 0.00 0.00 2.57
845 856 5.409589 AAACTCTAGTTGTGGCCTGCCAT 62.410 47.826 14.95 0.28 42.11 4.40
899 911 4.951254 TGTTCTCAGTTGAACGATACCAA 58.049 39.130 0.00 0.00 46.59 3.67
923 935 7.726033 AACTATGTCTCATCTAGGTGAGTTT 57.274 36.000 28.15 17.70 44.66 2.66
926 938 9.427821 ACTATGTCTCATCTAGGTGAGTTTTAT 57.572 33.333 28.15 19.87 44.66 1.40
980 1001 1.593479 GCATTAGCCCGGACGGTAC 60.593 63.158 0.73 1.46 33.58 3.34
1062 1089 1.149101 TGTTCCTTGCCTTCTCCCTT 58.851 50.000 0.00 0.00 0.00 3.95
1063 1090 2.039879 GTGTTCCTTGCCTTCTCCCTTA 59.960 50.000 0.00 0.00 0.00 2.69
1068 1098 2.507471 CCTTGCCTTCTCCCTTATCTGT 59.493 50.000 0.00 0.00 0.00 3.41
1273 1310 5.661312 TGTACTATCACTTATCCTTGTGGCT 59.339 40.000 0.00 0.00 35.15 4.75
1287 1329 2.089201 TGTGGCTCATGCTTGATTCAG 58.911 47.619 2.33 0.00 39.59 3.02
1365 1448 4.659874 GACGGCGGCAACAACGTG 62.660 66.667 8.47 0.00 46.64 4.49
1377 1460 4.328712 GGCAACAACGTGAAGTTCAATTTT 59.671 37.500 7.25 0.00 42.02 1.82
1425 1508 3.638627 TGTCTTGGAGCATCATCGAGTAT 59.361 43.478 0.00 0.00 36.25 2.12
1491 1574 2.283388 TGGGCGACGGACTACCTT 60.283 61.111 0.00 0.00 0.00 3.50
1492 1575 1.909781 TGGGCGACGGACTACCTTT 60.910 57.895 0.00 0.00 0.00 3.11
1505 1588 2.039879 ACTACCTTTTGAAGTCGGCCAT 59.960 45.455 2.24 0.00 0.00 4.40
1872 1959 2.863137 GCAAGTGCAACGAATTGGAAAA 59.137 40.909 0.00 0.00 45.86 2.29
1873 1960 3.308323 GCAAGTGCAACGAATTGGAAAAA 59.692 39.130 0.00 0.00 45.86 1.94
2083 2206 2.307049 GAACGAAAACACGCCATTCAG 58.693 47.619 0.00 0.00 36.70 3.02
2084 2207 1.305201 ACGAAAACACGCCATTCAGT 58.695 45.000 0.00 0.00 36.70 3.41
2085 2208 1.673920 ACGAAAACACGCCATTCAGTT 59.326 42.857 0.00 0.00 36.70 3.16
2086 2209 2.286772 ACGAAAACACGCCATTCAGTTC 60.287 45.455 0.00 0.00 36.70 3.01
2087 2210 2.286713 CGAAAACACGCCATTCAGTTCA 60.287 45.455 0.00 0.00 0.00 3.18
2110 2240 2.277591 CCCAATGGTGCCACACAGG 61.278 63.158 0.00 0.00 35.86 4.00
2138 2268 1.279539 CTGACACATTGCACGCGTT 59.720 52.632 10.22 0.00 0.00 4.84
2147 2277 2.970324 GCACGCGTTTGGGTCTGA 60.970 61.111 10.22 0.00 39.58 3.27
2148 2278 2.935955 CACGCGTTTGGGTCTGAC 59.064 61.111 10.22 0.00 39.58 3.51
2149 2279 1.594293 CACGCGTTTGGGTCTGACT 60.594 57.895 10.22 0.00 39.58 3.41
2150 2280 1.594293 ACGCGTTTGGGTCTGACTG 60.594 57.895 5.58 0.00 36.35 3.51
2151 2281 1.300620 CGCGTTTGGGTCTGACTGA 60.301 57.895 7.85 0.00 0.00 3.41
2219 2350 2.383527 GCGTCAAGCGGAGGAGTTG 61.384 63.158 5.48 0.00 41.69 3.16
2320 2451 0.511221 AACGTCAACATGCAGTACGC 59.489 50.000 9.53 3.22 36.02 4.42
2403 2537 2.249413 ATTCTCCTGCCAGAGCCACG 62.249 60.000 0.00 0.00 38.69 4.94
2404 2538 4.463879 CTCCTGCCAGAGCCACGG 62.464 72.222 0.00 0.00 38.69 4.94
2632 2766 1.077716 GGCCTAATCCCAACGTGCT 60.078 57.895 0.00 0.00 0.00 4.40
2783 2917 2.300437 GAGCTACAAGAACTGACCACCT 59.700 50.000 0.00 0.00 0.00 4.00
2791 2925 0.977395 AACTGACCACCTCTGCTACC 59.023 55.000 0.00 0.00 0.00 3.18
2792 2926 0.178932 ACTGACCACCTCTGCTACCA 60.179 55.000 0.00 0.00 0.00 3.25
2793 2927 1.198713 CTGACCACCTCTGCTACCAT 58.801 55.000 0.00 0.00 0.00 3.55
2944 3083 1.548081 ATGTTAGTTGCATGCTGGCA 58.452 45.000 20.33 9.48 43.19 4.92
2950 3089 2.419667 AGTTGCATGCTGGCATTTTTC 58.580 42.857 20.33 0.00 44.48 2.29
2955 3094 3.499157 TGCATGCTGGCATTTTTCTTTTC 59.501 39.130 20.33 0.00 39.25 2.29
2956 3095 3.749609 GCATGCTGGCATTTTTCTTTTCT 59.250 39.130 11.37 0.00 33.90 2.52
2957 3096 4.214758 GCATGCTGGCATTTTTCTTTTCTT 59.785 37.500 11.37 0.00 33.90 2.52
2958 3097 5.278120 GCATGCTGGCATTTTTCTTTTCTTT 60.278 36.000 11.37 0.00 33.90 2.52
2959 3098 6.731164 CATGCTGGCATTTTTCTTTTCTTTT 58.269 32.000 5.23 0.00 33.90 2.27
2987 3132 5.076182 TGTGGGCTACATCAAAAGAATTGA 58.924 37.500 0.00 0.00 33.42 2.57
2995 3140 5.787380 ACATCAAAAGAATTGAAAGAGGCC 58.213 37.500 0.00 0.00 31.55 5.19
2996 3141 5.541484 ACATCAAAAGAATTGAAAGAGGCCT 59.459 36.000 3.86 3.86 31.55 5.19
2997 3142 6.042437 ACATCAAAAGAATTGAAAGAGGCCTT 59.958 34.615 6.77 0.00 31.55 4.35
2998 3143 6.089249 TCAAAAGAATTGAAAGAGGCCTTC 57.911 37.500 6.77 0.00 0.00 3.46
2999 3144 5.598005 TCAAAAGAATTGAAAGAGGCCTTCA 59.402 36.000 6.77 3.52 0.00 3.02
3001 3146 4.647564 AGAATTGAAAGAGGCCTTCAGA 57.352 40.909 6.77 0.00 0.00 3.27
3013 3160 4.394729 AGGCCTTCAGAAACATACGAAAA 58.605 39.130 0.00 0.00 0.00 2.29
3025 3172 7.819415 AGAAACATACGAAAAGATGATGAGACA 59.181 33.333 0.00 0.00 0.00 3.41
3049 3196 8.532819 ACAAACTAACCAATGGTTACTTTTTGA 58.467 29.630 31.19 14.22 44.94 2.69
3050 3197 9.372369 CAAACTAACCAATGGTTACTTTTTGAA 57.628 29.630 26.23 9.56 44.94 2.69
3054 3201 4.202315 ACCAATGGTTACTTTTTGAAGGGC 60.202 41.667 0.00 0.00 27.29 5.19
3060 3207 1.332195 ACTTTTTGAAGGGCTCCTGC 58.668 50.000 0.00 0.00 32.13 4.85
3063 3210 4.828409 TTGAAGGGCTCCTGCAAG 57.172 55.556 9.87 0.00 43.70 4.01
3174 3322 3.347411 TTTTTGGTCGCGTTTTGGG 57.653 47.368 5.77 0.00 0.00 4.12
3177 3325 2.005960 TTTGGTCGCGTTTTGGGTGG 62.006 55.000 5.77 0.00 0.00 4.61
3190 3338 2.187163 GGTGGACCCGCTAAGAGC 59.813 66.667 0.00 0.00 38.02 4.09
3191 3339 2.656069 GGTGGACCCGCTAAGAGCA 61.656 63.158 0.00 0.00 42.58 4.26
3192 3340 1.522569 GTGGACCCGCTAAGAGCAT 59.477 57.895 0.00 0.00 42.58 3.79
3193 3341 0.530870 GTGGACCCGCTAAGAGCATC 60.531 60.000 0.00 0.00 42.58 3.91
3205 3353 2.378028 GAGCATCTCCAACAGTCGC 58.622 57.895 0.00 0.00 0.00 5.19
3206 3354 1.078848 AGCATCTCCAACAGTCGCC 60.079 57.895 0.00 0.00 0.00 5.54
3207 3355 2.456119 GCATCTCCAACAGTCGCCG 61.456 63.158 0.00 0.00 0.00 6.46
3208 3356 1.215382 CATCTCCAACAGTCGCCGA 59.785 57.895 0.00 0.00 0.00 5.54
3209 3357 0.389817 CATCTCCAACAGTCGCCGAA 60.390 55.000 0.00 0.00 0.00 4.30
3210 3358 0.389948 ATCTCCAACAGTCGCCGAAC 60.390 55.000 0.00 0.00 0.00 3.95
3211 3359 2.355363 TCCAACAGTCGCCGAACG 60.355 61.111 0.00 0.00 45.62 3.95
3212 3360 4.072088 CCAACAGTCGCCGAACGC 62.072 66.667 0.00 0.00 43.23 4.84
3242 3390 1.696988 AAAAATGGCTTTAGCGCGTG 58.303 45.000 8.43 0.00 43.26 5.34
3243 3391 0.732538 AAAATGGCTTTAGCGCGTGC 60.733 50.000 14.39 14.39 43.26 5.34
3244 3392 2.542211 AAATGGCTTTAGCGCGTGCC 62.542 55.000 19.02 22.33 44.31 5.01
3247 3395 3.508840 GCTTTAGCGCGTGCCCAT 61.509 61.111 19.02 1.12 44.31 4.00
3248 3396 2.709475 CTTTAGCGCGTGCCCATC 59.291 61.111 19.02 0.00 44.31 3.51
3249 3397 3.155470 CTTTAGCGCGTGCCCATCG 62.155 63.158 19.02 0.00 44.31 3.84
3257 3405 2.676471 GTGCCCATCGCCTGGTTT 60.676 61.111 0.00 0.00 44.30 3.27
3258 3406 2.676121 TGCCCATCGCCTGGTTTG 60.676 61.111 0.00 0.00 44.30 2.93
3259 3407 3.451894 GCCCATCGCCTGGTTTGG 61.452 66.667 0.00 0.14 44.30 3.28
3294 3442 3.900892 GCTCCAGTAGCCGCGCTA 61.901 66.667 5.56 2.98 46.25 4.26
3295 3443 2.805546 CTCCAGTAGCCGCGCTAA 59.194 61.111 5.56 0.00 43.07 3.09
3296 3444 1.141019 CTCCAGTAGCCGCGCTAAA 59.859 57.895 5.56 0.00 43.07 1.85
3297 3445 0.459585 CTCCAGTAGCCGCGCTAAAA 60.460 55.000 5.56 0.00 43.07 1.52
3298 3446 0.177141 TCCAGTAGCCGCGCTAAAAT 59.823 50.000 5.56 0.00 43.07 1.82
3299 3447 0.304705 CCAGTAGCCGCGCTAAAATG 59.695 55.000 5.56 6.22 43.07 2.32
3300 3448 0.316196 CAGTAGCCGCGCTAAAATGC 60.316 55.000 5.56 0.00 43.07 3.56
3301 3449 0.742990 AGTAGCCGCGCTAAAATGCA 60.743 50.000 5.56 0.00 43.07 3.96
3302 3450 0.316196 GTAGCCGCGCTAAAATGCAG 60.316 55.000 5.56 0.00 43.07 4.41
3303 3451 2.047151 TAGCCGCGCTAAAATGCAGC 62.047 55.000 5.56 0.00 38.27 5.25
3308 3456 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
3309 3457 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
3333 3481 4.819761 CTCCAGCAGCCGCGCTAA 62.820 66.667 5.56 1.87 45.49 3.09
3334 3482 4.386951 TCCAGCAGCCGCGCTAAA 62.387 61.111 5.56 0.00 45.49 1.85
3335 3483 3.430862 CCAGCAGCCGCGCTAAAA 61.431 61.111 5.56 0.00 45.49 1.52
3336 3484 2.764314 CCAGCAGCCGCGCTAAAAT 61.764 57.895 5.56 0.00 45.49 1.82
3337 3485 1.137404 CAGCAGCCGCGCTAAAATT 59.863 52.632 5.56 0.00 45.49 1.82
3338 3486 1.135699 CAGCAGCCGCGCTAAAATTG 61.136 55.000 5.56 0.00 45.49 2.32
3339 3487 2.508041 GCAGCCGCGCTAAAATTGC 61.508 57.895 5.56 3.10 36.40 3.56
3340 3488 1.154054 CAGCCGCGCTAAAATTGCA 60.154 52.632 5.56 0.00 36.40 4.08
3341 3489 1.135699 CAGCCGCGCTAAAATTGCAG 61.136 55.000 5.56 0.00 36.40 4.41
3342 3490 2.508041 GCCGCGCTAAAATTGCAGC 61.508 57.895 5.56 2.18 0.00 5.25
3346 3494 2.989948 GCTAAAATTGCAGCGCGC 59.010 55.556 26.66 26.66 42.89 6.86
3347 3495 2.838393 GCTAAAATTGCAGCGCGCG 61.838 57.895 28.44 28.44 46.97 6.86
3348 3496 2.838393 CTAAAATTGCAGCGCGCGC 61.838 57.895 45.10 45.10 46.97 6.86
3358 3506 3.254654 GCGCGCGCTCATTCTACA 61.255 61.111 44.38 0.00 38.26 2.74
3359 3507 2.798501 GCGCGCGCTCATTCTACAA 61.799 57.895 44.38 0.00 38.26 2.41
3360 3508 1.707451 CGCGCGCTCATTCTACAAA 59.293 52.632 30.48 0.00 0.00 2.83
3361 3509 0.584054 CGCGCGCTCATTCTACAAAC 60.584 55.000 30.48 0.00 0.00 2.93
3362 3510 0.721718 GCGCGCTCATTCTACAAACT 59.278 50.000 26.67 0.00 0.00 2.66
3363 3511 1.924524 GCGCGCTCATTCTACAAACTA 59.075 47.619 26.67 0.00 0.00 2.24
3364 3512 2.034507 GCGCGCTCATTCTACAAACTAG 60.035 50.000 26.67 0.00 0.00 2.57
3365 3513 2.535984 CGCGCTCATTCTACAAACTAGG 59.464 50.000 5.56 0.00 0.00 3.02
3366 3514 3.733988 CGCGCTCATTCTACAAACTAGGA 60.734 47.826 5.56 0.00 0.00 2.94
3367 3515 4.372656 GCGCTCATTCTACAAACTAGGAT 58.627 43.478 0.00 0.00 0.00 3.24
3368 3516 4.210120 GCGCTCATTCTACAAACTAGGATG 59.790 45.833 0.00 0.00 32.96 3.51
3369 3517 5.352284 CGCTCATTCTACAAACTAGGATGT 58.648 41.667 7.67 7.67 33.35 3.06
3370 3518 6.504398 CGCTCATTCTACAAACTAGGATGTA 58.496 40.000 8.91 8.91 33.35 2.29
3371 3519 6.638873 CGCTCATTCTACAAACTAGGATGTAG 59.361 42.308 22.00 22.00 46.63 2.74
3372 3520 6.926272 GCTCATTCTACAAACTAGGATGTAGG 59.074 42.308 25.01 15.52 45.76 3.18
3373 3521 6.817184 TCATTCTACAAACTAGGATGTAGGC 58.183 40.000 25.01 0.00 45.76 3.93
3374 3522 6.382859 TCATTCTACAAACTAGGATGTAGGCA 59.617 38.462 25.01 17.35 45.76 4.75
3375 3523 6.808321 TTCTACAAACTAGGATGTAGGCAT 57.192 37.500 25.01 0.00 45.76 4.40
3376 3524 6.808321 TCTACAAACTAGGATGTAGGCATT 57.192 37.500 25.01 0.00 45.76 3.56
3377 3525 6.582636 TCTACAAACTAGGATGTAGGCATTG 58.417 40.000 25.01 9.72 45.76 2.82
3378 3526 4.526970 ACAAACTAGGATGTAGGCATTGG 58.473 43.478 1.22 0.00 35.07 3.16
3379 3527 4.227300 ACAAACTAGGATGTAGGCATTGGA 59.773 41.667 1.22 0.00 35.07 3.53
3380 3528 5.192927 CAAACTAGGATGTAGGCATTGGAA 58.807 41.667 0.00 0.00 35.07 3.53
3381 3529 4.696479 ACTAGGATGTAGGCATTGGAAG 57.304 45.455 0.00 0.00 35.07 3.46
3382 3530 2.355010 AGGATGTAGGCATTGGAAGC 57.645 50.000 0.00 0.00 35.07 3.86
3383 3531 1.565759 AGGATGTAGGCATTGGAAGCA 59.434 47.619 0.00 0.00 35.07 3.91
3384 3532 2.176364 AGGATGTAGGCATTGGAAGCAT 59.824 45.455 0.00 0.00 35.07 3.79
3385 3533 3.395607 AGGATGTAGGCATTGGAAGCATA 59.604 43.478 0.00 0.00 35.07 3.14
3386 3534 3.755378 GGATGTAGGCATTGGAAGCATAG 59.245 47.826 0.00 0.00 35.07 2.23
3387 3535 4.505566 GGATGTAGGCATTGGAAGCATAGA 60.506 45.833 0.00 0.00 35.07 1.98
3388 3536 4.502105 TGTAGGCATTGGAAGCATAGAA 57.498 40.909 0.00 0.00 0.00 2.10
3389 3537 4.854173 TGTAGGCATTGGAAGCATAGAAA 58.146 39.130 0.00 0.00 0.00 2.52
3390 3538 4.883585 TGTAGGCATTGGAAGCATAGAAAG 59.116 41.667 0.00 0.00 0.00 2.62
3391 3539 3.973425 AGGCATTGGAAGCATAGAAAGT 58.027 40.909 0.00 0.00 0.00 2.66
3392 3540 5.116084 AGGCATTGGAAGCATAGAAAGTA 57.884 39.130 0.00 0.00 0.00 2.24
3393 3541 5.128919 AGGCATTGGAAGCATAGAAAGTAG 58.871 41.667 0.00 0.00 0.00 2.57
3394 3542 5.104360 AGGCATTGGAAGCATAGAAAGTAGA 60.104 40.000 0.00 0.00 0.00 2.59
3395 3543 5.767168 GGCATTGGAAGCATAGAAAGTAGAT 59.233 40.000 0.00 0.00 0.00 1.98
3396 3544 6.936900 GGCATTGGAAGCATAGAAAGTAGATA 59.063 38.462 0.00 0.00 0.00 1.98
3397 3545 7.118971 GGCATTGGAAGCATAGAAAGTAGATAG 59.881 40.741 0.00 0.00 0.00 2.08
3398 3546 7.875041 GCATTGGAAGCATAGAAAGTAGATAGA 59.125 37.037 0.00 0.00 0.00 1.98
3399 3547 9.941325 CATTGGAAGCATAGAAAGTAGATAGAT 57.059 33.333 0.00 0.00 0.00 1.98
3401 3549 9.770097 TTGGAAGCATAGAAAGTAGATAGATTG 57.230 33.333 0.00 0.00 0.00 2.67
3402 3550 7.875041 TGGAAGCATAGAAAGTAGATAGATTGC 59.125 37.037 0.00 0.00 0.00 3.56
3403 3551 7.875041 GGAAGCATAGAAAGTAGATAGATTGCA 59.125 37.037 0.00 0.00 0.00 4.08
3404 3552 9.434420 GAAGCATAGAAAGTAGATAGATTGCAT 57.566 33.333 0.00 0.00 0.00 3.96
3422 3570 9.853555 AGATTGCATAAAATTTTGACGATACAA 57.146 25.926 13.76 6.60 0.00 2.41
3425 3573 8.459521 TGCATAAAATTTTGACGATACAAAGG 57.540 30.769 13.76 0.00 40.15 3.11
3426 3574 8.085296 TGCATAAAATTTTGACGATACAAAGGT 58.915 29.630 13.76 0.00 40.15 3.50
3427 3575 9.562583 GCATAAAATTTTGACGATACAAAGGTA 57.437 29.630 13.76 0.00 40.15 3.08
3438 3586 8.597227 TGACGATACAAAGGTATTTTTACATCG 58.403 33.333 0.00 0.00 40.28 3.84
3439 3587 7.912383 ACGATACAAAGGTATTTTTACATCGG 58.088 34.615 0.00 0.00 40.28 4.18
3440 3588 7.765360 ACGATACAAAGGTATTTTTACATCGGA 59.235 33.333 0.00 0.00 40.28 4.55
3441 3589 8.605746 CGATACAAAGGTATTTTTACATCGGAA 58.394 33.333 0.00 0.00 40.28 4.30
3444 3592 7.942990 ACAAAGGTATTTTTACATCGGAAACA 58.057 30.769 0.00 0.00 0.00 2.83
3445 3593 8.581578 ACAAAGGTATTTTTACATCGGAAACAT 58.418 29.630 0.00 0.00 0.00 2.71
3448 3596 9.675464 AAGGTATTTTTACATCGGAAACATAGA 57.325 29.630 0.00 0.00 0.00 1.98
3449 3597 9.847224 AGGTATTTTTACATCGGAAACATAGAT 57.153 29.630 0.00 0.00 0.00 1.98
3452 3600 8.856490 ATTTTTACATCGGAAACATAGATTGC 57.144 30.769 0.00 0.00 0.00 3.56
3453 3601 6.993786 TTTACATCGGAAACATAGATTGCA 57.006 33.333 0.00 0.00 0.00 4.08
3454 3602 7.566760 TTTACATCGGAAACATAGATTGCAT 57.433 32.000 0.00 0.00 0.00 3.96
3455 3603 8.669946 TTTACATCGGAAACATAGATTGCATA 57.330 30.769 0.00 0.00 0.00 3.14
3456 3604 8.669946 TTACATCGGAAACATAGATTGCATAA 57.330 30.769 0.00 0.00 0.00 1.90
3457 3605 7.566760 ACATCGGAAACATAGATTGCATAAA 57.433 32.000 0.00 0.00 0.00 1.40
3458 3606 7.995289 ACATCGGAAACATAGATTGCATAAAA 58.005 30.769 0.00 0.00 0.00 1.52
3459 3607 8.632679 ACATCGGAAACATAGATTGCATAAAAT 58.367 29.630 0.00 0.00 0.00 1.82
3473 3621 7.909777 TTGCATAAAATAAAACGACAAACGA 57.090 28.000 0.00 0.00 45.77 3.85
3474 3622 8.508800 TTGCATAAAATAAAACGACAAACGAT 57.491 26.923 0.00 0.00 45.77 3.73
3475 3623 9.608617 TTGCATAAAATAAAACGACAAACGATA 57.391 25.926 0.00 0.00 45.77 2.92
3476 3624 9.608617 TGCATAAAATAAAACGACAAACGATAA 57.391 25.926 0.00 0.00 45.77 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.114529 CACCAAATAACCGCGTTATAAACAAAA 59.885 33.333 4.92 0.00 37.69 2.44
137 138 5.471116 TCAATATAGTAGTACGTGCGACCAT 59.529 40.000 12.84 8.01 0.00 3.55
263 268 8.827677 GTTTATGATTTTGACTAGGCTAACGAT 58.172 33.333 0.00 0.00 0.00 3.73
269 274 7.775053 TTTGGTTTATGATTTTGACTAGGCT 57.225 32.000 0.00 0.00 0.00 4.58
422 429 5.652452 GGCCTCACAATTAGTTGAGGTATTT 59.348 40.000 22.11 0.00 42.56 1.40
481 489 7.756395 TTCTCAAAGCTCTCTCATTCAATTT 57.244 32.000 0.00 0.00 0.00 1.82
510 519 5.119743 GTGTCACCGGATTTTGACTAGTTAC 59.880 44.000 19.99 8.81 42.31 2.50
512 521 4.062991 GTGTCACCGGATTTTGACTAGTT 58.937 43.478 19.99 0.00 42.31 2.24
516 525 2.218603 GTGTGTCACCGGATTTTGACT 58.781 47.619 19.99 0.00 42.31 3.41
526 536 3.595173 TCCAATTAGATGTGTGTCACCG 58.405 45.455 0.00 0.00 32.73 4.94
533 543 8.270030 TCAATTGAGATCTCCAATTAGATGTGT 58.730 33.333 20.03 0.81 40.91 3.72
562 572 4.282449 GCTCCCTAGTTTTAAAAAGCCCAA 59.718 41.667 1.31 0.00 0.00 4.12
617 628 7.028926 TGTAACAGCCGAAGACAAATAAAAA 57.971 32.000 0.00 0.00 0.00 1.94
618 629 6.621316 TGTAACAGCCGAAGACAAATAAAA 57.379 33.333 0.00 0.00 0.00 1.52
619 630 6.236017 CTGTAACAGCCGAAGACAAATAAA 57.764 37.500 0.00 0.00 0.00 1.40
620 631 5.856126 CTGTAACAGCCGAAGACAAATAA 57.144 39.130 0.00 0.00 0.00 1.40
634 645 4.359706 GGTTGGTTTTTCTGCTGTAACAG 58.640 43.478 0.00 0.00 39.12 3.16
635 646 3.131400 GGGTTGGTTTTTCTGCTGTAACA 59.869 43.478 0.00 0.00 0.00 2.41
636 647 3.131400 TGGGTTGGTTTTTCTGCTGTAAC 59.869 43.478 0.00 0.00 0.00 2.50
637 648 3.366396 TGGGTTGGTTTTTCTGCTGTAA 58.634 40.909 0.00 0.00 0.00 2.41
638 649 3.019799 TGGGTTGGTTTTTCTGCTGTA 57.980 42.857 0.00 0.00 0.00 2.74
639 650 1.859302 TGGGTTGGTTTTTCTGCTGT 58.141 45.000 0.00 0.00 0.00 4.40
640 651 3.473923 AATGGGTTGGTTTTTCTGCTG 57.526 42.857 0.00 0.00 0.00 4.41
641 652 6.496911 AGTTATAATGGGTTGGTTTTTCTGCT 59.503 34.615 0.00 0.00 0.00 4.24
642 653 6.697395 AGTTATAATGGGTTGGTTTTTCTGC 58.303 36.000 0.00 0.00 0.00 4.26
643 654 8.122472 AGAGTTATAATGGGTTGGTTTTTCTG 57.878 34.615 0.00 0.00 0.00 3.02
644 655 8.721133 AAGAGTTATAATGGGTTGGTTTTTCT 57.279 30.769 0.00 0.00 0.00 2.52
645 656 8.033038 GGAAGAGTTATAATGGGTTGGTTTTTC 58.967 37.037 0.00 0.00 0.00 2.29
646 657 7.038587 GGGAAGAGTTATAATGGGTTGGTTTTT 60.039 37.037 0.00 0.00 0.00 1.94
647 658 6.439375 GGGAAGAGTTATAATGGGTTGGTTTT 59.561 38.462 0.00 0.00 0.00 2.43
648 659 5.955959 GGGAAGAGTTATAATGGGTTGGTTT 59.044 40.000 0.00 0.00 0.00 3.27
649 660 5.255443 AGGGAAGAGTTATAATGGGTTGGTT 59.745 40.000 0.00 0.00 0.00 3.67
650 661 4.794067 AGGGAAGAGTTATAATGGGTTGGT 59.206 41.667 0.00 0.00 0.00 3.67
651 662 5.388599 AGGGAAGAGTTATAATGGGTTGG 57.611 43.478 0.00 0.00 0.00 3.77
652 663 6.663734 AGAAGGGAAGAGTTATAATGGGTTG 58.336 40.000 0.00 0.00 0.00 3.77
653 664 6.126449 GGAGAAGGGAAGAGTTATAATGGGTT 60.126 42.308 0.00 0.00 0.00 4.11
654 665 5.369993 GGAGAAGGGAAGAGTTATAATGGGT 59.630 44.000 0.00 0.00 0.00 4.51
655 666 5.608860 AGGAGAAGGGAAGAGTTATAATGGG 59.391 44.000 0.00 0.00 0.00 4.00
656 667 6.755542 AGGAGAAGGGAAGAGTTATAATGG 57.244 41.667 0.00 0.00 0.00 3.16
657 668 9.114952 GAAAAGGAGAAGGGAAGAGTTATAATG 57.885 37.037 0.00 0.00 0.00 1.90
658 669 9.063484 AGAAAAGGAGAAGGGAAGAGTTATAAT 57.937 33.333 0.00 0.00 0.00 1.28
659 670 8.450780 AGAAAAGGAGAAGGGAAGAGTTATAA 57.549 34.615 0.00 0.00 0.00 0.98
660 671 8.322091 CAAGAAAAGGAGAAGGGAAGAGTTATA 58.678 37.037 0.00 0.00 0.00 0.98
661 672 6.961361 AGAAAAGGAGAAGGGAAGAGTTAT 57.039 37.500 0.00 0.00 0.00 1.89
662 673 6.101296 ACAAGAAAAGGAGAAGGGAAGAGTTA 59.899 38.462 0.00 0.00 0.00 2.24
663 674 5.103898 ACAAGAAAAGGAGAAGGGAAGAGTT 60.104 40.000 0.00 0.00 0.00 3.01
664 675 4.413851 ACAAGAAAAGGAGAAGGGAAGAGT 59.586 41.667 0.00 0.00 0.00 3.24
665 676 4.979335 ACAAGAAAAGGAGAAGGGAAGAG 58.021 43.478 0.00 0.00 0.00 2.85
666 677 5.607171 ACTACAAGAAAAGGAGAAGGGAAGA 59.393 40.000 0.00 0.00 0.00 2.87
667 678 5.870706 ACTACAAGAAAAGGAGAAGGGAAG 58.129 41.667 0.00 0.00 0.00 3.46
668 679 5.906772 ACTACAAGAAAAGGAGAAGGGAA 57.093 39.130 0.00 0.00 0.00 3.97
669 680 5.842328 TGTACTACAAGAAAAGGAGAAGGGA 59.158 40.000 0.00 0.00 0.00 4.20
670 681 6.110411 TGTACTACAAGAAAAGGAGAAGGG 57.890 41.667 0.00 0.00 0.00 3.95
688 699 9.726438 AGCATTACTCTTTTTATCACTTGTACT 57.274 29.630 0.00 0.00 0.00 2.73
691 702 9.944376 TCTAGCATTACTCTTTTTATCACTTGT 57.056 29.630 0.00 0.00 0.00 3.16
700 711 9.372369 GAGTGTGTATCTAGCATTACTCTTTTT 57.628 33.333 0.00 0.00 33.82 1.94
701 712 8.531982 TGAGTGTGTATCTAGCATTACTCTTTT 58.468 33.333 0.00 0.00 35.69 2.27
702 713 8.067751 TGAGTGTGTATCTAGCATTACTCTTT 57.932 34.615 0.00 0.93 35.69 2.52
703 714 7.646548 TGAGTGTGTATCTAGCATTACTCTT 57.353 36.000 0.00 1.15 35.69 2.85
704 715 7.831691 ATGAGTGTGTATCTAGCATTACTCT 57.168 36.000 0.00 0.00 35.69 3.24
705 716 8.568794 TGTATGAGTGTGTATCTAGCATTACTC 58.431 37.037 0.00 0.00 35.46 2.59
706 717 8.465273 TGTATGAGTGTGTATCTAGCATTACT 57.535 34.615 0.00 0.00 0.00 2.24
707 718 9.698309 ATTGTATGAGTGTGTATCTAGCATTAC 57.302 33.333 0.00 0.00 0.00 1.89
710 721 9.920133 CTAATTGTATGAGTGTGTATCTAGCAT 57.080 33.333 0.00 0.00 0.00 3.79
711 722 7.867909 GCTAATTGTATGAGTGTGTATCTAGCA 59.132 37.037 0.00 0.00 0.00 3.49
712 723 8.085296 AGCTAATTGTATGAGTGTGTATCTAGC 58.915 37.037 0.00 0.00 0.00 3.42
713 724 9.404348 CAGCTAATTGTATGAGTGTGTATCTAG 57.596 37.037 0.00 0.00 0.00 2.43
714 725 8.360390 CCAGCTAATTGTATGAGTGTGTATCTA 58.640 37.037 0.00 0.00 0.00 1.98
715 726 7.212976 CCAGCTAATTGTATGAGTGTGTATCT 58.787 38.462 0.00 0.00 0.00 1.98
716 727 6.073548 GCCAGCTAATTGTATGAGTGTGTATC 60.074 42.308 0.00 0.00 0.00 2.24
717 728 5.760253 GCCAGCTAATTGTATGAGTGTGTAT 59.240 40.000 0.00 0.00 0.00 2.29
718 729 5.116180 GCCAGCTAATTGTATGAGTGTGTA 58.884 41.667 0.00 0.00 0.00 2.90
719 730 3.941483 GCCAGCTAATTGTATGAGTGTGT 59.059 43.478 0.00 0.00 0.00 3.72
720 731 3.940852 TGCCAGCTAATTGTATGAGTGTG 59.059 43.478 0.00 0.00 0.00 3.82
721 732 4.220693 TGCCAGCTAATTGTATGAGTGT 57.779 40.909 0.00 0.00 0.00 3.55
722 733 5.061853 AGATGCCAGCTAATTGTATGAGTG 58.938 41.667 0.00 0.00 0.00 3.51
723 734 5.301835 AGATGCCAGCTAATTGTATGAGT 57.698 39.130 0.00 0.00 0.00 3.41
724 735 6.630444 AAAGATGCCAGCTAATTGTATGAG 57.370 37.500 0.00 0.00 0.00 2.90
725 736 7.775093 ACTAAAAGATGCCAGCTAATTGTATGA 59.225 33.333 0.00 0.00 0.00 2.15
726 737 7.934457 ACTAAAAGATGCCAGCTAATTGTATG 58.066 34.615 0.00 0.00 0.00 2.39
727 738 8.408601 CAACTAAAAGATGCCAGCTAATTGTAT 58.591 33.333 0.00 0.00 0.00 2.29
728 739 7.148086 CCAACTAAAAGATGCCAGCTAATTGTA 60.148 37.037 0.00 0.00 0.00 2.41
729 740 6.350445 CCAACTAAAAGATGCCAGCTAATTGT 60.350 38.462 0.00 0.00 0.00 2.71
730 741 6.038356 CCAACTAAAAGATGCCAGCTAATTG 58.962 40.000 0.00 0.00 0.00 2.32
731 742 5.951747 TCCAACTAAAAGATGCCAGCTAATT 59.048 36.000 0.00 0.00 0.00 1.40
732 743 5.509498 TCCAACTAAAAGATGCCAGCTAAT 58.491 37.500 0.00 0.00 0.00 1.73
733 744 4.917385 TCCAACTAAAAGATGCCAGCTAA 58.083 39.130 0.00 0.00 0.00 3.09
734 745 4.225042 TCTCCAACTAAAAGATGCCAGCTA 59.775 41.667 0.00 0.00 0.00 3.32
735 746 3.009473 TCTCCAACTAAAAGATGCCAGCT 59.991 43.478 0.00 0.00 0.00 4.24
736 747 3.347216 TCTCCAACTAAAAGATGCCAGC 58.653 45.455 0.00 0.00 0.00 4.85
737 748 6.261826 CCTTATCTCCAACTAAAAGATGCCAG 59.738 42.308 0.00 0.00 32.25 4.85
738 749 6.122277 CCTTATCTCCAACTAAAAGATGCCA 58.878 40.000 0.00 0.00 32.25 4.92
739 750 5.532779 CCCTTATCTCCAACTAAAAGATGCC 59.467 44.000 0.00 0.00 32.25 4.40
740 751 6.357367 TCCCTTATCTCCAACTAAAAGATGC 58.643 40.000 0.00 0.00 32.25 3.91
741 752 6.995091 CCTCCCTTATCTCCAACTAAAAGATG 59.005 42.308 0.00 0.00 32.25 2.90
742 753 6.409810 GCCTCCCTTATCTCCAACTAAAAGAT 60.410 42.308 0.00 0.00 34.29 2.40
743 754 5.104485 GCCTCCCTTATCTCCAACTAAAAGA 60.104 44.000 0.00 0.00 0.00 2.52
744 755 5.126779 GCCTCCCTTATCTCCAACTAAAAG 58.873 45.833 0.00 0.00 0.00 2.27
745 756 4.383770 CGCCTCCCTTATCTCCAACTAAAA 60.384 45.833 0.00 0.00 0.00 1.52
746 757 3.134081 CGCCTCCCTTATCTCCAACTAAA 59.866 47.826 0.00 0.00 0.00 1.85
747 758 2.698797 CGCCTCCCTTATCTCCAACTAA 59.301 50.000 0.00 0.00 0.00 2.24
748 759 2.317040 CGCCTCCCTTATCTCCAACTA 58.683 52.381 0.00 0.00 0.00 2.24
749 760 1.123928 CGCCTCCCTTATCTCCAACT 58.876 55.000 0.00 0.00 0.00 3.16
750 761 0.533085 GCGCCTCCCTTATCTCCAAC 60.533 60.000 0.00 0.00 0.00 3.77
751 762 1.696097 GGCGCCTCCCTTATCTCCAA 61.696 60.000 22.15 0.00 0.00 3.53
752 763 2.140792 GGCGCCTCCCTTATCTCCA 61.141 63.158 22.15 0.00 0.00 3.86
753 764 2.140792 TGGCGCCTCCCTTATCTCC 61.141 63.158 29.70 0.00 0.00 3.71
754 765 1.069935 GTGGCGCCTCCCTTATCTC 59.930 63.158 29.70 0.00 0.00 2.75
755 766 1.383248 AGTGGCGCCTCCCTTATCT 60.383 57.895 29.70 9.68 0.00 1.98
756 767 1.227674 CAGTGGCGCCTCCCTTATC 60.228 63.158 29.70 7.57 0.00 1.75
757 768 1.056700 ATCAGTGGCGCCTCCCTTAT 61.057 55.000 29.70 14.20 0.00 1.73
758 769 1.271840 AATCAGTGGCGCCTCCCTTA 61.272 55.000 29.70 12.48 0.00 2.69
759 770 2.606587 AATCAGTGGCGCCTCCCTT 61.607 57.895 29.70 14.29 0.00 3.95
760 771 3.011517 AATCAGTGGCGCCTCCCT 61.012 61.111 29.70 17.66 0.00 4.20
761 772 2.825836 CAATCAGTGGCGCCTCCC 60.826 66.667 29.70 15.51 0.00 4.30
762 773 2.045926 ACAATCAGTGGCGCCTCC 60.046 61.111 29.70 18.26 0.00 4.30
763 774 2.109126 GGACAATCAGTGGCGCCTC 61.109 63.158 29.70 25.08 35.23 4.70
764 775 2.045926 GGACAATCAGTGGCGCCT 60.046 61.111 29.70 4.80 35.23 5.52
765 776 3.499737 CGGACAATCAGTGGCGCC 61.500 66.667 22.73 22.73 35.23 6.53
766 777 1.852067 AAACGGACAATCAGTGGCGC 61.852 55.000 0.00 0.00 35.23 6.53
767 778 0.110238 CAAACGGACAATCAGTGGCG 60.110 55.000 0.00 0.00 35.23 5.69
768 779 0.951558 ACAAACGGACAATCAGTGGC 59.048 50.000 0.00 0.00 0.00 5.01
769 780 3.708563 AAACAAACGGACAATCAGTGG 57.291 42.857 0.00 0.00 0.00 4.00
770 781 6.055231 TCTTAAACAAACGGACAATCAGTG 57.945 37.500 0.00 0.00 0.00 3.66
771 782 6.877611 ATCTTAAACAAACGGACAATCAGT 57.122 33.333 0.00 0.00 0.00 3.41
772 783 9.840427 AATAATCTTAAACAAACGGACAATCAG 57.160 29.630 0.00 0.00 0.00 2.90
773 784 9.619316 CAATAATCTTAAACAAACGGACAATCA 57.381 29.630 0.00 0.00 0.00 2.57
774 785 9.072294 CCAATAATCTTAAACAAACGGACAATC 57.928 33.333 0.00 0.00 0.00 2.67
775 786 8.798402 TCCAATAATCTTAAACAAACGGACAAT 58.202 29.630 0.00 0.00 0.00 2.71
776 787 8.077386 GTCCAATAATCTTAAACAAACGGACAA 58.923 33.333 0.00 0.00 38.30 3.18
777 788 7.228906 TGTCCAATAATCTTAAACAAACGGACA 59.771 33.333 0.00 0.00 44.15 4.02
778 789 7.586747 TGTCCAATAATCTTAAACAAACGGAC 58.413 34.615 0.00 0.00 38.77 4.79
779 790 7.747155 TGTCCAATAATCTTAAACAAACGGA 57.253 32.000 0.00 0.00 0.00 4.69
780 791 8.804688 TTTGTCCAATAATCTTAAACAAACGG 57.195 30.769 0.00 0.00 32.10 4.44
790 801 8.875168 TGTTGGGTTTATTTGTCCAATAATCTT 58.125 29.630 0.00 0.00 40.77 2.40
791 802 8.429237 TGTTGGGTTTATTTGTCCAATAATCT 57.571 30.769 0.00 0.00 40.77 2.40
792 803 9.150348 CTTGTTGGGTTTATTTGTCCAATAATC 57.850 33.333 0.00 0.00 40.77 1.75
793 804 8.875168 TCTTGTTGGGTTTATTTGTCCAATAAT 58.125 29.630 0.00 0.00 40.77 1.28
794 805 8.251383 TCTTGTTGGGTTTATTTGTCCAATAA 57.749 30.769 0.00 0.00 40.77 1.40
795 806 7.841282 TCTTGTTGGGTTTATTTGTCCAATA 57.159 32.000 0.00 0.00 40.77 1.90
796 807 6.739331 TCTTGTTGGGTTTATTTGTCCAAT 57.261 33.333 0.00 0.00 40.77 3.16
797 808 6.546428 TTCTTGTTGGGTTTATTTGTCCAA 57.454 33.333 0.00 0.00 36.98 3.53
798 809 6.070767 TGTTTCTTGTTGGGTTTATTTGTCCA 60.071 34.615 0.00 0.00 0.00 4.02
799 810 6.342111 TGTTTCTTGTTGGGTTTATTTGTCC 58.658 36.000 0.00 0.00 0.00 4.02
804 815 7.847096 AGAGTTTGTTTCTTGTTGGGTTTATT 58.153 30.769 0.00 0.00 0.00 1.40
806 817 6.844097 AGAGTTTGTTTCTTGTTGGGTTTA 57.156 33.333 0.00 0.00 0.00 2.01
809 820 5.506708 ACTAGAGTTTGTTTCTTGTTGGGT 58.493 37.500 0.00 0.00 28.50 4.51
827 838 3.899371 TGGCAGGCCACAACTAGA 58.101 55.556 9.35 0.00 41.89 2.43
865 877 9.979270 GTTCAACTGAGAACAACTAATATCATG 57.021 33.333 11.02 0.00 45.53 3.07
866 878 8.873830 CGTTCAACTGAGAACAACTAATATCAT 58.126 33.333 14.47 0.00 46.32 2.45
923 935 5.015072 TGGCCATGATTTATAGAGCCCATAA 59.985 40.000 0.00 0.00 38.15 1.90
926 938 2.715880 TGGCCATGATTTATAGAGCCCA 59.284 45.455 0.00 0.00 38.15 5.36
980 1001 1.992667 TGTTTTCTCGCTGATGCTACG 59.007 47.619 0.00 0.00 36.97 3.51
981 1002 3.618594 TCATGTTTTCTCGCTGATGCTAC 59.381 43.478 0.00 0.00 36.97 3.58
982 1003 3.860641 TCATGTTTTCTCGCTGATGCTA 58.139 40.909 0.00 0.00 36.97 3.49
983 1004 2.676839 CTCATGTTTTCTCGCTGATGCT 59.323 45.455 0.00 0.00 36.97 3.79
984 1005 2.790468 GCTCATGTTTTCTCGCTGATGC 60.790 50.000 0.00 0.00 0.00 3.91
986 1007 2.703416 TGCTCATGTTTTCTCGCTGAT 58.297 42.857 0.00 0.00 0.00 2.90
987 1008 2.168326 TGCTCATGTTTTCTCGCTGA 57.832 45.000 0.00 0.00 0.00 4.26
988 1009 2.975410 TTGCTCATGTTTTCTCGCTG 57.025 45.000 0.00 0.00 0.00 5.18
989 1010 3.425359 CGAATTGCTCATGTTTTCTCGCT 60.425 43.478 0.00 0.00 0.00 4.93
990 1011 2.842485 CGAATTGCTCATGTTTTCTCGC 59.158 45.455 0.00 0.00 0.00 5.03
991 1012 3.419915 CCGAATTGCTCATGTTTTCTCG 58.580 45.455 0.00 0.00 0.00 4.04
1047 1074 2.507471 ACAGATAAGGGAGAAGGCAAGG 59.493 50.000 0.00 0.00 0.00 3.61
1062 1089 3.118261 GGACATGGCTGGAGAAACAGATA 60.118 47.826 0.00 0.00 40.97 1.98
1063 1090 2.356535 GGACATGGCTGGAGAAACAGAT 60.357 50.000 0.00 0.00 40.97 2.90
1068 1098 0.250234 CGAGGACATGGCTGGAGAAA 59.750 55.000 0.00 0.00 0.00 2.52
1122 1152 2.734079 CTGGAAGAAGAGCAACGACTTC 59.266 50.000 0.00 0.00 41.64 3.01
1230 1260 0.322975 AGTGGAGACATCGCTTGCTT 59.677 50.000 0.00 0.00 46.14 3.91
1273 1310 2.097680 TCACGCTGAATCAAGCATGA 57.902 45.000 0.00 0.00 42.63 3.07
1287 1329 2.924290 GTCAAACTCTAGGTCATCACGC 59.076 50.000 0.00 0.00 0.00 5.34
1292 1334 6.263168 CCAACAAAAGTCAAACTCTAGGTCAT 59.737 38.462 0.00 0.00 0.00 3.06
1365 1448 3.253230 CGCCATGGGAAAATTGAACTTC 58.747 45.455 15.13 0.00 0.00 3.01
1491 1574 0.034198 TCGTCATGGCCGACTTCAAA 59.966 50.000 8.86 0.00 33.54 2.69
1492 1575 1.668867 TCGTCATGGCCGACTTCAA 59.331 52.632 8.86 0.00 33.54 2.69
1505 1588 4.629523 GTTTGCCCGGGGTCGTCA 62.630 66.667 25.28 8.37 33.95 4.35
1754 1837 1.299976 CTGTACTTCCCCTGGTGCC 59.700 63.158 0.00 0.00 0.00 5.01
1872 1959 6.361899 GCACACGCAAAATCATTACAATTTT 58.638 32.000 0.00 0.00 36.91 1.82
1873 1960 5.914746 GCACACGCAAAATCATTACAATTT 58.085 33.333 0.00 0.00 38.36 1.82
1874 1961 5.514059 GCACACGCAAAATCATTACAATT 57.486 34.783 0.00 0.00 38.36 2.32
1898 2011 3.226429 GAGCTCGTCCTGCACACCA 62.226 63.158 0.00 0.00 0.00 4.17
2099 2224 1.598130 GAGTGGACCTGTGTGGCAC 60.598 63.158 11.55 11.55 40.22 5.01
2110 2240 1.802960 CAATGTGTCAGCTGAGTGGAC 59.197 52.381 18.89 11.96 0.00 4.02
2138 2268 0.321919 GCATGCTCAGTCAGACCCAA 60.322 55.000 11.37 0.00 0.00 4.12
2147 2277 2.271497 GCCCTCTGCATGCTCAGT 59.729 61.111 20.33 0.00 40.77 3.41
2148 2278 2.590645 AGCCCTCTGCATGCTCAG 59.409 61.111 20.33 13.84 44.83 3.35
2297 2428 0.819259 ACTGCATGTTGACGTTGCCT 60.819 50.000 6.70 0.00 0.00 4.75
2384 2515 1.606531 GTGGCTCTGGCAGGAGAAT 59.393 57.895 15.73 0.00 39.19 2.40
2510 2644 2.284625 TGGTGGATCCTCTGCGGT 60.285 61.111 14.23 0.00 37.07 5.68
2791 2925 5.746721 CACACAATAAAGATCCACATGCATG 59.253 40.000 25.09 25.09 0.00 4.06
2792 2926 5.653330 TCACACAATAAAGATCCACATGCAT 59.347 36.000 0.00 0.00 0.00 3.96
2793 2927 5.008980 TCACACAATAAAGATCCACATGCA 58.991 37.500 0.00 0.00 0.00 3.96
2925 3064 1.548081 TGCCAGCATGCAACTAACAT 58.452 45.000 21.98 0.00 38.56 2.71
2928 3067 3.681593 AAAATGCCAGCATGCAACTAA 57.318 38.095 21.98 1.17 45.84 2.24
2930 3069 2.038033 AGAAAAATGCCAGCATGCAACT 59.962 40.909 21.98 0.00 45.84 3.16
2958 3097 5.596361 TCTTTTGATGTAGCCCACAGAAAAA 59.404 36.000 9.46 9.46 41.51 1.94
2959 3098 5.136828 TCTTTTGATGTAGCCCACAGAAAA 58.863 37.500 0.00 2.98 41.51 2.29
2978 3123 5.388654 TCTGAAGGCCTCTTTCAATTCTTT 58.611 37.500 5.23 0.00 32.52 2.52
2987 3132 4.003648 CGTATGTTTCTGAAGGCCTCTTT 58.996 43.478 5.23 0.00 32.52 2.52
2995 3140 8.659491 TCATCATCTTTTCGTATGTTTCTGAAG 58.341 33.333 0.00 0.00 0.00 3.02
2996 3141 8.546597 TCATCATCTTTTCGTATGTTTCTGAA 57.453 30.769 0.00 0.00 0.00 3.02
2997 3142 8.034804 TCTCATCATCTTTTCGTATGTTTCTGA 58.965 33.333 0.00 0.00 0.00 3.27
2998 3143 8.113062 GTCTCATCATCTTTTCGTATGTTTCTG 58.887 37.037 0.00 0.00 0.00 3.02
2999 3144 7.819415 TGTCTCATCATCTTTTCGTATGTTTCT 59.181 33.333 0.00 0.00 0.00 2.52
3001 3146 7.905604 TGTCTCATCATCTTTTCGTATGTTT 57.094 32.000 0.00 0.00 0.00 2.83
3013 3160 6.600822 CCATTGGTTAGTTTGTCTCATCATCT 59.399 38.462 0.00 0.00 0.00 2.90
3049 3196 2.860971 ACCCTTGCAGGAGCCCTT 60.861 61.111 0.00 0.00 37.67 3.95
3050 3197 3.334054 GACCCTTGCAGGAGCCCT 61.334 66.667 0.00 0.00 37.67 5.19
3054 3201 1.986882 AAAAGTGACCCTTGCAGGAG 58.013 50.000 0.00 0.00 37.67 3.69
3091 3238 1.901085 GGCTGGACAGACCACTAGG 59.099 63.158 3.00 0.00 44.64 3.02
3092 3239 1.513158 CGGCTGGACAGACCACTAG 59.487 63.158 3.00 0.00 44.64 2.57
3093 3240 2.646175 GCGGCTGGACAGACCACTA 61.646 63.158 3.00 0.00 44.64 2.74
3126 3274 2.673775 TCCAAATGAAGGGCTCAACA 57.326 45.000 0.00 0.00 37.67 3.33
3128 3276 5.332743 ACTAAATCCAAATGAAGGGCTCAA 58.667 37.500 0.00 0.00 37.67 3.02
3159 3307 2.482333 CCACCCAAAACGCGACCAA 61.482 57.895 15.93 0.00 0.00 3.67
3160 3308 2.902846 CCACCCAAAACGCGACCA 60.903 61.111 15.93 0.00 0.00 4.02
3161 3309 2.592287 TCCACCCAAAACGCGACC 60.592 61.111 15.93 0.00 0.00 4.79
3162 3310 2.635338 GTCCACCCAAAACGCGAC 59.365 61.111 15.93 0.00 0.00 5.19
3163 3311 2.592287 GGTCCACCCAAAACGCGA 60.592 61.111 15.93 0.00 0.00 5.87
3174 3322 0.530870 GATGCTCTTAGCGGGTCCAC 60.531 60.000 0.00 0.00 46.26 4.02
3177 3325 0.032815 GGAGATGCTCTTAGCGGGTC 59.967 60.000 0.00 0.00 46.26 4.46
3188 3336 1.078848 GGCGACTGTTGGAGATGCT 60.079 57.895 0.00 0.00 0.00 3.79
3189 3337 2.456119 CGGCGACTGTTGGAGATGC 61.456 63.158 0.00 0.00 0.00 3.91
3190 3338 0.389817 TTCGGCGACTGTTGGAGATG 60.390 55.000 10.16 0.00 0.00 2.90
3191 3339 0.389948 GTTCGGCGACTGTTGGAGAT 60.390 55.000 10.16 0.00 0.00 2.75
3192 3340 1.006571 GTTCGGCGACTGTTGGAGA 60.007 57.895 10.16 0.00 0.00 3.71
3193 3341 2.372690 CGTTCGGCGACTGTTGGAG 61.373 63.158 10.16 0.00 44.77 3.86
3194 3342 2.355363 CGTTCGGCGACTGTTGGA 60.355 61.111 10.16 0.00 44.77 3.53
3195 3343 4.072088 GCGTTCGGCGACTGTTGG 62.072 66.667 10.16 0.00 44.77 3.77
3223 3371 1.696988 CACGCGCTAAAGCCATTTTT 58.303 45.000 5.73 0.00 37.91 1.94
3224 3372 0.732538 GCACGCGCTAAAGCCATTTT 60.733 50.000 5.73 0.00 37.91 1.82
3225 3373 1.154035 GCACGCGCTAAAGCCATTT 60.154 52.632 5.73 0.00 37.91 2.32
3226 3374 2.485122 GCACGCGCTAAAGCCATT 59.515 55.556 5.73 0.00 37.91 3.16
3227 3375 3.508840 GGCACGCGCTAAAGCCAT 61.509 61.111 19.72 0.00 46.26 4.40
3230 3378 3.454960 GATGGGCACGCGCTAAAGC 62.455 63.158 5.73 2.35 38.60 3.51
3231 3379 2.709475 GATGGGCACGCGCTAAAG 59.291 61.111 5.73 0.00 38.60 1.85
3232 3380 3.192230 CGATGGGCACGCGCTAAA 61.192 61.111 5.73 0.00 38.60 1.85
3278 3426 0.459585 TTTTAGCGCGGCTACTGGAG 60.460 55.000 8.83 0.00 41.12 3.86
3279 3427 0.177141 ATTTTAGCGCGGCTACTGGA 59.823 50.000 8.83 0.00 41.12 3.86
3280 3428 0.304705 CATTTTAGCGCGGCTACTGG 59.695 55.000 8.83 0.00 41.12 4.00
3281 3429 0.316196 GCATTTTAGCGCGGCTACTG 60.316 55.000 8.83 8.50 41.12 2.74
3282 3430 0.742990 TGCATTTTAGCGCGGCTACT 60.743 50.000 8.83 0.00 41.12 2.57
3283 3431 0.316196 CTGCATTTTAGCGCGGCTAC 60.316 55.000 8.83 0.00 41.12 3.58
3284 3432 2.013807 CTGCATTTTAGCGCGGCTA 58.986 52.632 8.83 7.24 40.44 3.93
3285 3433 2.793946 CTGCATTTTAGCGCGGCT 59.206 55.556 8.83 8.38 43.41 5.52
3291 3439 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
3292 3440 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
3316 3464 4.819761 TTAGCGCGGCTGCTGGAG 62.820 66.667 22.96 0.14 46.70 3.86
3317 3465 3.892740 TTTTAGCGCGGCTGCTGGA 62.893 57.895 22.96 12.50 46.70 3.86
3318 3466 2.270297 AATTTTAGCGCGGCTGCTGG 62.270 55.000 22.96 1.40 46.70 4.85
3319 3467 1.135699 CAATTTTAGCGCGGCTGCTG 61.136 55.000 22.96 10.42 46.70 4.41
3321 3469 2.508041 GCAATTTTAGCGCGGCTGC 61.508 57.895 8.83 7.70 40.10 5.25
3322 3470 1.135699 CTGCAATTTTAGCGCGGCTG 61.136 55.000 8.83 0.00 40.10 4.85
3323 3471 1.137404 CTGCAATTTTAGCGCGGCT 59.863 52.632 8.83 8.38 43.41 5.52
3324 3472 3.679262 CTGCAATTTTAGCGCGGC 58.321 55.556 8.83 0.00 33.85 6.53
3325 3473 3.679262 GCTGCAATTTTAGCGCGG 58.321 55.556 8.83 0.00 35.06 6.46
3329 3477 2.838393 CGCGCGCTGCAATTTTAGC 61.838 57.895 30.48 5.87 46.97 3.09
3330 3478 2.838393 GCGCGCGCTGCAATTTTAG 61.838 57.895 44.38 15.25 46.97 1.85
3331 3479 2.873851 GCGCGCGCTGCAATTTTA 60.874 55.556 44.38 0.00 46.97 1.52
3341 3489 2.291508 TTTGTAGAATGAGCGCGCGC 62.292 55.000 45.10 45.10 42.33 6.86
3342 3490 0.584054 GTTTGTAGAATGAGCGCGCG 60.584 55.000 28.44 28.44 0.00 6.86
3343 3491 0.721718 AGTTTGTAGAATGAGCGCGC 59.278 50.000 26.66 26.66 0.00 6.86
3344 3492 2.535984 CCTAGTTTGTAGAATGAGCGCG 59.464 50.000 0.00 0.00 0.00 6.86
3345 3493 3.782046 TCCTAGTTTGTAGAATGAGCGC 58.218 45.455 0.00 0.00 0.00 5.92
3346 3494 5.352284 ACATCCTAGTTTGTAGAATGAGCG 58.648 41.667 0.00 0.00 0.00 5.03
3347 3495 6.926272 CCTACATCCTAGTTTGTAGAATGAGC 59.074 42.308 21.96 0.00 45.25 4.26
3348 3496 6.926272 GCCTACATCCTAGTTTGTAGAATGAG 59.074 42.308 21.96 11.50 45.25 2.90
3349 3497 6.382859 TGCCTACATCCTAGTTTGTAGAATGA 59.617 38.462 21.96 7.57 45.25 2.57
3350 3498 6.582636 TGCCTACATCCTAGTTTGTAGAATG 58.417 40.000 21.96 11.99 45.25 2.67
3351 3499 6.808321 TGCCTACATCCTAGTTTGTAGAAT 57.192 37.500 21.96 0.00 45.25 2.40
3352 3500 6.808321 ATGCCTACATCCTAGTTTGTAGAA 57.192 37.500 21.96 14.14 45.25 2.10
3353 3501 6.408092 CCAATGCCTACATCCTAGTTTGTAGA 60.408 42.308 21.96 10.16 45.25 2.59
3354 3502 5.760253 CCAATGCCTACATCCTAGTTTGTAG 59.240 44.000 16.77 16.77 43.14 2.74
3355 3503 5.427157 TCCAATGCCTACATCCTAGTTTGTA 59.573 40.000 2.97 2.97 34.62 2.41
3356 3504 4.227300 TCCAATGCCTACATCCTAGTTTGT 59.773 41.667 1.05 1.05 34.62 2.83
3357 3505 4.780815 TCCAATGCCTACATCCTAGTTTG 58.219 43.478 0.00 0.00 34.62 2.93
3358 3506 5.440610 CTTCCAATGCCTACATCCTAGTTT 58.559 41.667 0.00 0.00 34.62 2.66
3359 3507 4.687219 GCTTCCAATGCCTACATCCTAGTT 60.687 45.833 0.00 0.00 34.62 2.24
3360 3508 3.181450 GCTTCCAATGCCTACATCCTAGT 60.181 47.826 0.00 0.00 34.62 2.57
3361 3509 3.181451 TGCTTCCAATGCCTACATCCTAG 60.181 47.826 0.00 0.00 34.62 3.02
3362 3510 2.777114 TGCTTCCAATGCCTACATCCTA 59.223 45.455 0.00 0.00 34.62 2.94
3363 3511 1.565759 TGCTTCCAATGCCTACATCCT 59.434 47.619 0.00 0.00 34.62 3.24
3364 3512 2.057137 TGCTTCCAATGCCTACATCC 57.943 50.000 0.00 0.00 34.62 3.51
3365 3513 4.645535 TCTATGCTTCCAATGCCTACATC 58.354 43.478 0.00 0.00 34.62 3.06
3366 3514 4.712051 TCTATGCTTCCAATGCCTACAT 57.288 40.909 0.00 0.00 38.49 2.29
3367 3515 4.502105 TTCTATGCTTCCAATGCCTACA 57.498 40.909 0.00 0.00 0.00 2.74
3368 3516 4.884164 ACTTTCTATGCTTCCAATGCCTAC 59.116 41.667 0.00 0.00 0.00 3.18
3369 3517 5.116084 ACTTTCTATGCTTCCAATGCCTA 57.884 39.130 0.00 0.00 0.00 3.93
3370 3518 3.973425 ACTTTCTATGCTTCCAATGCCT 58.027 40.909 0.00 0.00 0.00 4.75
3371 3519 5.126067 TCTACTTTCTATGCTTCCAATGCC 58.874 41.667 0.00 0.00 0.00 4.40
3372 3520 6.874288 ATCTACTTTCTATGCTTCCAATGC 57.126 37.500 0.00 0.00 0.00 3.56
3373 3521 9.941325 ATCTATCTACTTTCTATGCTTCCAATG 57.059 33.333 0.00 0.00 0.00 2.82
3375 3523 9.770097 CAATCTATCTACTTTCTATGCTTCCAA 57.230 33.333 0.00 0.00 0.00 3.53
3376 3524 7.875041 GCAATCTATCTACTTTCTATGCTTCCA 59.125 37.037 0.00 0.00 0.00 3.53
3377 3525 7.875041 TGCAATCTATCTACTTTCTATGCTTCC 59.125 37.037 0.00 0.00 0.00 3.46
3378 3526 8.824159 TGCAATCTATCTACTTTCTATGCTTC 57.176 34.615 0.00 0.00 0.00 3.86
3396 3544 9.853555 TTGTATCGTCAAAATTTTATGCAATCT 57.146 25.926 2.44 0.00 0.00 2.40
3399 3547 8.920665 CCTTTGTATCGTCAAAATTTTATGCAA 58.079 29.630 2.44 6.92 36.96 4.08
3400 3548 8.085296 ACCTTTGTATCGTCAAAATTTTATGCA 58.915 29.630 2.44 0.90 36.96 3.96
3401 3549 8.460831 ACCTTTGTATCGTCAAAATTTTATGC 57.539 30.769 2.44 0.00 36.96 3.14
3412 3560 8.597227 CGATGTAAAAATACCTTTGTATCGTCA 58.403 33.333 0.00 0.00 36.65 4.35
3413 3561 8.060090 CCGATGTAAAAATACCTTTGTATCGTC 58.940 37.037 0.00 0.00 36.65 4.20
3414 3562 7.765360 TCCGATGTAAAAATACCTTTGTATCGT 59.235 33.333 0.00 0.00 36.65 3.73
3415 3563 8.133754 TCCGATGTAAAAATACCTTTGTATCG 57.866 34.615 0.00 0.00 36.65 2.92
3418 3566 9.064706 TGTTTCCGATGTAAAAATACCTTTGTA 57.935 29.630 0.00 0.00 0.00 2.41
3419 3567 7.942990 TGTTTCCGATGTAAAAATACCTTTGT 58.057 30.769 0.00 0.00 0.00 2.83
3420 3568 8.980143 ATGTTTCCGATGTAAAAATACCTTTG 57.020 30.769 0.00 0.00 0.00 2.77
3422 3570 9.675464 TCTATGTTTCCGATGTAAAAATACCTT 57.325 29.630 0.00 0.00 0.00 3.50
3423 3571 9.847224 ATCTATGTTTCCGATGTAAAAATACCT 57.153 29.630 0.00 0.00 0.00 3.08
3426 3574 9.944663 GCAATCTATGTTTCCGATGTAAAAATA 57.055 29.630 0.00 0.00 0.00 1.40
3427 3575 8.465999 TGCAATCTATGTTTCCGATGTAAAAAT 58.534 29.630 0.00 0.00 0.00 1.82
3428 3576 7.821652 TGCAATCTATGTTTCCGATGTAAAAA 58.178 30.769 0.00 0.00 0.00 1.94
3429 3577 7.384439 TGCAATCTATGTTTCCGATGTAAAA 57.616 32.000 0.00 0.00 0.00 1.52
3430 3578 6.993786 TGCAATCTATGTTTCCGATGTAAA 57.006 33.333 0.00 0.00 0.00 2.01
3431 3579 8.669946 TTATGCAATCTATGTTTCCGATGTAA 57.330 30.769 0.00 0.00 0.00 2.41
3432 3580 8.669946 TTTATGCAATCTATGTTTCCGATGTA 57.330 30.769 0.00 0.00 0.00 2.29
3433 3581 7.566760 TTTATGCAATCTATGTTTCCGATGT 57.433 32.000 0.00 0.00 0.00 3.06
3446 3594 8.635124 CGTTTGTCGTTTTATTTTATGCAATCT 58.365 29.630 0.00 0.00 34.52 2.40
3447 3595 8.631695 TCGTTTGTCGTTTTATTTTATGCAATC 58.368 29.630 0.00 0.00 40.80 2.67
3448 3596 8.508800 TCGTTTGTCGTTTTATTTTATGCAAT 57.491 26.923 0.00 0.00 40.80 3.56
3449 3597 7.909777 TCGTTTGTCGTTTTATTTTATGCAA 57.090 28.000 0.00 0.00 40.80 4.08
3450 3598 9.608617 TTATCGTTTGTCGTTTTATTTTATGCA 57.391 25.926 0.00 0.00 40.80 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.