Multiple sequence alignment - TraesCS6B01G121900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G121900 chr6B 100.000 6215 0 0 1 6215 116601993 116608207 0.000000e+00 11478.0
1 TraesCS6B01G121900 chr6B 86.652 457 52 7 2690 3143 70047536 70047086 1.200000e-136 497.0
2 TraesCS6B01G121900 chr6A 94.997 5077 172 25 818 5865 60999836 61004859 0.000000e+00 7893.0
3 TraesCS6B01G121900 chr6A 96.923 65 2 0 6002 6066 61005374 61005438 6.590000e-20 110.0
4 TraesCS6B01G121900 chr6D 93.753 3938 191 24 216 4122 54270446 54266533 0.000000e+00 5858.0
5 TraesCS6B01G121900 chr6D 95.563 1848 45 11 4208 6040 54266534 54264709 0.000000e+00 2924.0
6 TraesCS6B01G121900 chr6D 95.989 374 10 2 5847 6215 54264717 54264344 2.480000e-168 603.0
7 TraesCS6B01G121900 chr3D 87.840 551 59 7 2690 3237 421789671 421789126 1.890000e-179 640.0
8 TraesCS6B01G121900 chr3B 86.779 416 50 4 3468 3883 811777960 811777550 5.680000e-125 459.0
9 TraesCS6B01G121900 chr5A 86.765 136 13 4 2731 2866 617225874 617225744 5.020000e-31 147.0
10 TraesCS6B01G121900 chr5A 94.286 35 1 1 3991 4025 389159045 389159078 1.100000e-02 52.8
11 TraesCS6B01G121900 chr7D 85.816 141 15 4 2726 2866 507234398 507234263 1.810000e-30 145.0
12 TraesCS6B01G121900 chr7D 83.688 141 18 4 2726 2866 498387773 498387908 1.820000e-25 128.0
13 TraesCS6B01G121900 chr7D 93.443 61 4 0 156 216 566464265 566464205 2.390000e-14 91.6
14 TraesCS6B01G121900 chr5D 85.816 141 15 4 2726 2866 90693414 90693549 1.810000e-30 145.0
15 TraesCS6B01G121900 chr5D 85.816 141 15 4 2726 2866 117888555 117888420 1.810000e-30 145.0
16 TraesCS6B01G121900 chr1B 92.000 75 5 1 142 215 395353210 395353284 3.060000e-18 104.0
17 TraesCS6B01G121900 chr7B 96.875 32 0 1 3998 4028 540804088 540804057 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G121900 chr6B 116601993 116608207 6214 False 11478.000000 11478 100.000000 1 6215 1 chr6B.!!$F1 6214
1 TraesCS6B01G121900 chr6A 60999836 61005438 5602 False 4001.500000 7893 95.960000 818 6066 2 chr6A.!!$F1 5248
2 TraesCS6B01G121900 chr6D 54264344 54270446 6102 True 3128.333333 5858 95.101667 216 6215 3 chr6D.!!$R1 5999
3 TraesCS6B01G121900 chr3D 421789126 421789671 545 True 640.000000 640 87.840000 2690 3237 1 chr3D.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.034863 GGGCCGGACATTAAACTCCA 60.035 55.000 11.00 0.0 0.00 3.86 F
237 238 0.462047 GGACCATAAGCCACAGTCGG 60.462 60.000 0.00 0.0 0.00 4.79 F
491 494 0.464036 TGTTGAAGTCGTCACTGCCT 59.536 50.000 0.00 0.0 35.39 4.75 F
493 496 0.464036 TTGAAGTCGTCACTGCCTGT 59.536 50.000 0.00 0.0 35.39 4.00 F
1438 1468 0.467804 TTTCTGGCAACCTTTTGGGC 59.532 50.000 0.00 0.0 46.08 5.36 F
1459 1489 1.739067 GCTAGCGAGAATGGTTGGTT 58.261 50.000 0.00 0.0 0.00 3.67 F
1750 1798 2.182827 TGCACTGATAGGTCTGCTTCT 58.817 47.619 0.00 0.0 0.00 2.85 F
2051 2099 2.781681 ATGGTTTAACAGGACCTCGG 57.218 50.000 0.00 0.0 36.86 4.63 F
2949 3000 1.019673 CCAATGTCTCAAGGCATCGG 58.980 55.000 0.00 0.0 0.00 4.18 F
4901 4956 1.064505 TCTACTACCGCGTTCCAATCG 59.935 52.381 4.92 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 1551 0.325933 ACATTCTACAGGCAGCAGCA 59.674 50.000 2.65 0.00 44.61 4.41 R
1539 1586 4.022935 CCAATGAAAGCAGCACTTGTAAGA 60.023 41.667 0.00 0.00 39.09 2.10 R
2051 2099 5.428253 TCTGCAGTTCCTTGACCAATATAC 58.572 41.667 14.67 0.00 0.00 1.47 R
2650 2699 7.275560 CGCCCTGAAAACCTTGATTTTAAATAG 59.724 37.037 0.00 0.00 31.90 1.73 R
2675 2724 0.107703 TCTGCCCTTCTGTTATGCCG 60.108 55.000 0.00 0.00 0.00 5.69 R
2947 2998 0.798776 GCAGGAGTGTTCAATCACCG 59.201 55.000 2.88 0.00 38.91 4.94 R
2949 3000 2.771089 TCTGCAGGAGTGTTCAATCAC 58.229 47.619 15.13 0.00 38.46 3.06 R
3115 3166 2.985957 AAACACCTTTGCATGCAAGT 57.014 40.000 30.25 23.36 37.24 3.16 R
5100 5161 0.964700 TGATATCCTGAGCTCCGCTG 59.035 55.000 12.15 0.00 39.88 5.18 R
6178 6646 1.831736 CGGTAGGATCACCAAGGACTT 59.168 52.381 3.35 0.00 38.61 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.945033 TCAACAATGTTAAGAAAATCCAAGC 57.055 32.000 0.00 0.00 0.00 4.01
41 42 6.640499 TCAACAATGTTAAGAAAATCCAAGCG 59.360 34.615 0.00 0.00 0.00 4.68
42 43 6.084326 ACAATGTTAAGAAAATCCAAGCGT 57.916 33.333 0.00 0.00 0.00 5.07
43 44 6.149633 ACAATGTTAAGAAAATCCAAGCGTC 58.850 36.000 0.00 0.00 0.00 5.19
44 45 4.398549 TGTTAAGAAAATCCAAGCGTCG 57.601 40.909 0.00 0.00 0.00 5.12
45 46 4.059511 TGTTAAGAAAATCCAAGCGTCGA 58.940 39.130 0.00 0.00 0.00 4.20
46 47 4.512198 TGTTAAGAAAATCCAAGCGTCGAA 59.488 37.500 0.00 0.00 0.00 3.71
47 48 5.007823 TGTTAAGAAAATCCAAGCGTCGAAA 59.992 36.000 0.00 0.00 0.00 3.46
48 49 4.766404 AAGAAAATCCAAGCGTCGAAAT 57.234 36.364 0.00 0.00 0.00 2.17
49 50 4.083581 AGAAAATCCAAGCGTCGAAATG 57.916 40.909 0.00 0.00 0.00 2.32
50 51 2.919666 AAATCCAAGCGTCGAAATGG 57.080 45.000 0.00 0.34 0.00 3.16
51 52 2.107950 AATCCAAGCGTCGAAATGGA 57.892 45.000 14.01 14.01 45.42 3.41
52 53 2.107950 ATCCAAGCGTCGAAATGGAA 57.892 45.000 15.16 3.38 44.58 3.53
53 54 1.153353 TCCAAGCGTCGAAATGGAAC 58.847 50.000 10.50 0.00 38.95 3.62
54 55 2.874052 ATCCAAGCGTCGAAATGGAACA 60.874 45.455 15.16 0.00 44.58 3.18
71 72 6.956202 TGGAACAACCGGTTTATAGAAAAA 57.044 33.333 19.55 0.00 40.63 1.94
72 73 7.527568 TGGAACAACCGGTTTATAGAAAAAT 57.472 32.000 19.55 0.00 40.63 1.82
73 74 8.632906 TGGAACAACCGGTTTATAGAAAAATA 57.367 30.769 19.55 0.00 40.63 1.40
74 75 9.245481 TGGAACAACCGGTTTATAGAAAAATAT 57.755 29.630 19.55 0.00 40.63 1.28
91 92 9.479549 AGAAAAATATAGAAGAAATTGAGGCCA 57.520 29.630 5.01 0.00 0.00 5.36
94 95 9.652114 AAAATATAGAAGAAATTGAGGCCATCT 57.348 29.630 5.01 0.00 0.00 2.90
95 96 8.632906 AATATAGAAGAAATTGAGGCCATCTG 57.367 34.615 5.01 0.00 0.00 2.90
96 97 4.313020 AGAAGAAATTGAGGCCATCTGT 57.687 40.909 5.01 0.00 0.00 3.41
97 98 4.268359 AGAAGAAATTGAGGCCATCTGTC 58.732 43.478 5.01 0.00 0.00 3.51
98 99 4.018597 AGAAGAAATTGAGGCCATCTGTCT 60.019 41.667 5.01 0.00 0.00 3.41
99 100 3.883669 AGAAATTGAGGCCATCTGTCTC 58.116 45.455 5.01 0.00 0.00 3.36
100 101 3.265221 AGAAATTGAGGCCATCTGTCTCA 59.735 43.478 5.01 0.00 35.95 3.27
101 102 3.726557 AATTGAGGCCATCTGTCTCAA 57.273 42.857 11.18 11.18 46.99 3.02
102 103 2.775911 TTGAGGCCATCTGTCTCAAG 57.224 50.000 5.01 0.00 41.04 3.02
103 104 0.251354 TGAGGCCATCTGTCTCAAGC 59.749 55.000 5.01 0.00 34.97 4.01
104 105 0.251354 GAGGCCATCTGTCTCAAGCA 59.749 55.000 5.01 0.00 0.00 3.91
105 106 0.694771 AGGCCATCTGTCTCAAGCAA 59.305 50.000 5.01 0.00 0.00 3.91
106 107 1.284198 AGGCCATCTGTCTCAAGCAAT 59.716 47.619 5.01 0.00 0.00 3.56
107 108 2.507058 AGGCCATCTGTCTCAAGCAATA 59.493 45.455 5.01 0.00 0.00 1.90
108 109 3.137913 AGGCCATCTGTCTCAAGCAATAT 59.862 43.478 5.01 0.00 0.00 1.28
109 110 3.501445 GGCCATCTGTCTCAAGCAATATC 59.499 47.826 0.00 0.00 0.00 1.63
110 111 4.387598 GCCATCTGTCTCAAGCAATATCT 58.612 43.478 0.00 0.00 0.00 1.98
111 112 4.451774 GCCATCTGTCTCAAGCAATATCTC 59.548 45.833 0.00 0.00 0.00 2.75
112 113 4.996122 CCATCTGTCTCAAGCAATATCTCC 59.004 45.833 0.00 0.00 0.00 3.71
113 114 5.454329 CCATCTGTCTCAAGCAATATCTCCA 60.454 44.000 0.00 0.00 0.00 3.86
114 115 5.016051 TCTGTCTCAAGCAATATCTCCAC 57.984 43.478 0.00 0.00 0.00 4.02
115 116 4.467438 TCTGTCTCAAGCAATATCTCCACA 59.533 41.667 0.00 0.00 0.00 4.17
116 117 5.046376 TCTGTCTCAAGCAATATCTCCACAA 60.046 40.000 0.00 0.00 0.00 3.33
117 118 5.559770 TGTCTCAAGCAATATCTCCACAAA 58.440 37.500 0.00 0.00 0.00 2.83
118 119 6.003326 TGTCTCAAGCAATATCTCCACAAAA 58.997 36.000 0.00 0.00 0.00 2.44
119 120 6.072508 TGTCTCAAGCAATATCTCCACAAAAC 60.073 38.462 0.00 0.00 0.00 2.43
120 121 5.415701 TCTCAAGCAATATCTCCACAAAACC 59.584 40.000 0.00 0.00 0.00 3.27
121 122 5.076182 TCAAGCAATATCTCCACAAAACCA 58.924 37.500 0.00 0.00 0.00 3.67
122 123 5.183713 TCAAGCAATATCTCCACAAAACCAG 59.816 40.000 0.00 0.00 0.00 4.00
123 124 3.445096 AGCAATATCTCCACAAAACCAGC 59.555 43.478 0.00 0.00 0.00 4.85
124 125 3.445096 GCAATATCTCCACAAAACCAGCT 59.555 43.478 0.00 0.00 0.00 4.24
125 126 4.676196 GCAATATCTCCACAAAACCAGCTG 60.676 45.833 6.78 6.78 0.00 4.24
126 127 1.251251 ATCTCCACAAAACCAGCTGC 58.749 50.000 8.66 0.00 0.00 5.25
127 128 0.823356 TCTCCACAAAACCAGCTGCC 60.823 55.000 8.66 0.00 0.00 4.85
128 129 1.809567 CTCCACAAAACCAGCTGCCC 61.810 60.000 8.66 0.00 0.00 5.36
129 130 2.132996 CCACAAAACCAGCTGCCCA 61.133 57.895 8.66 0.00 0.00 5.36
130 131 1.474332 CCACAAAACCAGCTGCCCAT 61.474 55.000 8.66 0.00 0.00 4.00
131 132 0.320073 CACAAAACCAGCTGCCCATG 60.320 55.000 8.66 7.20 0.00 3.66
132 133 1.294138 CAAAACCAGCTGCCCATGG 59.706 57.895 8.66 4.14 42.60 3.66
133 134 1.155859 AAAACCAGCTGCCCATGGA 59.844 52.632 15.22 0.00 39.02 3.41
134 135 0.901580 AAAACCAGCTGCCCATGGAG 60.902 55.000 15.22 4.42 39.02 3.86
135 136 2.793317 AAACCAGCTGCCCATGGAGG 62.793 60.000 15.22 7.49 39.02 4.30
143 144 2.765969 CCCATGGAGGCTTGGTGT 59.234 61.111 15.22 0.00 35.39 4.16
144 145 1.998530 CCCATGGAGGCTTGGTGTA 59.001 57.895 15.22 0.00 35.39 2.90
145 146 0.107017 CCCATGGAGGCTTGGTGTAG 60.107 60.000 15.22 0.00 35.39 2.74
146 147 0.911769 CCATGGAGGCTTGGTGTAGA 59.088 55.000 5.56 0.00 0.00 2.59
147 148 1.281867 CCATGGAGGCTTGGTGTAGAA 59.718 52.381 5.56 0.00 0.00 2.10
148 149 2.636830 CATGGAGGCTTGGTGTAGAAG 58.363 52.381 0.00 0.00 0.00 2.85
149 150 1.729586 TGGAGGCTTGGTGTAGAAGT 58.270 50.000 0.00 0.00 0.00 3.01
150 151 1.347707 TGGAGGCTTGGTGTAGAAGTG 59.652 52.381 0.00 0.00 0.00 3.16
151 152 1.623811 GGAGGCTTGGTGTAGAAGTGA 59.376 52.381 0.00 0.00 0.00 3.41
152 153 2.038557 GGAGGCTTGGTGTAGAAGTGAA 59.961 50.000 0.00 0.00 0.00 3.18
153 154 3.307762 GGAGGCTTGGTGTAGAAGTGAAT 60.308 47.826 0.00 0.00 0.00 2.57
154 155 4.327680 GAGGCTTGGTGTAGAAGTGAATT 58.672 43.478 0.00 0.00 0.00 2.17
155 156 4.327680 AGGCTTGGTGTAGAAGTGAATTC 58.672 43.478 0.00 0.00 38.28 2.17
157 158 4.393371 GGCTTGGTGTAGAAGTGAATTCTC 59.607 45.833 7.05 2.93 45.50 2.87
158 159 5.241662 GCTTGGTGTAGAAGTGAATTCTCT 58.758 41.667 7.05 5.55 45.50 3.10
159 160 6.398918 GCTTGGTGTAGAAGTGAATTCTCTA 58.601 40.000 10.30 4.84 45.50 2.43
160 161 6.533367 GCTTGGTGTAGAAGTGAATTCTCTAG 59.467 42.308 10.30 2.86 45.50 2.43
161 162 5.967088 TGGTGTAGAAGTGAATTCTCTAGC 58.033 41.667 10.30 6.38 45.50 3.42
162 163 5.105310 TGGTGTAGAAGTGAATTCTCTAGCC 60.105 44.000 10.30 11.56 45.50 3.93
163 164 5.105310 GGTGTAGAAGTGAATTCTCTAGCCA 60.105 44.000 10.30 3.49 45.50 4.75
164 165 6.398918 GTGTAGAAGTGAATTCTCTAGCCAA 58.601 40.000 10.30 0.00 45.50 4.52
165 166 7.044798 GTGTAGAAGTGAATTCTCTAGCCAAT 58.955 38.462 10.30 0.00 45.50 3.16
166 167 7.010923 GTGTAGAAGTGAATTCTCTAGCCAATG 59.989 40.741 10.30 0.00 45.50 2.82
167 168 4.880696 AGAAGTGAATTCTCTAGCCAATGC 59.119 41.667 10.30 0.00 45.50 3.56
168 169 4.226427 AGTGAATTCTCTAGCCAATGCA 57.774 40.909 8.25 0.00 41.13 3.96
169 170 4.592942 AGTGAATTCTCTAGCCAATGCAA 58.407 39.130 8.25 0.00 41.13 4.08
170 171 4.397417 AGTGAATTCTCTAGCCAATGCAAC 59.603 41.667 8.25 0.00 41.13 4.17
171 172 4.156556 GTGAATTCTCTAGCCAATGCAACA 59.843 41.667 7.05 0.00 41.13 3.33
172 173 4.766373 TGAATTCTCTAGCCAATGCAACAA 59.234 37.500 7.05 0.00 41.13 2.83
173 174 5.243507 TGAATTCTCTAGCCAATGCAACAAA 59.756 36.000 7.05 0.00 41.13 2.83
174 175 5.726980 ATTCTCTAGCCAATGCAACAAAA 57.273 34.783 0.00 0.00 41.13 2.44
175 176 4.771590 TCTCTAGCCAATGCAACAAAAG 57.228 40.909 0.00 0.00 41.13 2.27
176 177 4.397420 TCTCTAGCCAATGCAACAAAAGA 58.603 39.130 0.00 0.00 41.13 2.52
177 178 4.216257 TCTCTAGCCAATGCAACAAAAGAC 59.784 41.667 0.00 0.00 41.13 3.01
178 179 2.531522 AGCCAATGCAACAAAAGACC 57.468 45.000 0.00 0.00 41.13 3.85
179 180 1.761784 AGCCAATGCAACAAAAGACCA 59.238 42.857 0.00 0.00 41.13 4.02
180 181 2.170187 AGCCAATGCAACAAAAGACCAA 59.830 40.909 0.00 0.00 41.13 3.67
181 182 3.140623 GCCAATGCAACAAAAGACCAAT 58.859 40.909 0.00 0.00 37.47 3.16
182 183 3.187022 GCCAATGCAACAAAAGACCAATC 59.813 43.478 0.00 0.00 37.47 2.67
183 184 4.634199 CCAATGCAACAAAAGACCAATCT 58.366 39.130 0.00 0.00 36.42 2.40
184 185 4.449743 CCAATGCAACAAAAGACCAATCTG 59.550 41.667 0.00 0.00 34.48 2.90
185 186 4.942761 ATGCAACAAAAGACCAATCTGT 57.057 36.364 0.00 0.00 34.48 3.41
186 187 4.044336 TGCAACAAAAGACCAATCTGTG 57.956 40.909 0.00 0.00 34.48 3.66
195 196 1.225704 CCAATCTGTGGGAGAGGGC 59.774 63.158 0.00 0.00 44.64 5.19
196 197 1.225704 CAATCTGTGGGAGAGGGCC 59.774 63.158 0.00 0.00 32.80 5.80
197 198 2.370445 AATCTGTGGGAGAGGGCCG 61.370 63.158 0.00 0.00 32.80 6.13
202 203 4.414956 TGGGAGAGGGCCGGACAT 62.415 66.667 11.00 0.00 0.00 3.06
203 204 3.090532 GGGAGAGGGCCGGACATT 61.091 66.667 11.00 0.00 0.00 2.71
204 205 1.764854 GGGAGAGGGCCGGACATTA 60.765 63.158 11.00 0.00 0.00 1.90
205 206 1.342672 GGGAGAGGGCCGGACATTAA 61.343 60.000 11.00 0.00 0.00 1.40
206 207 0.544697 GGAGAGGGCCGGACATTAAA 59.455 55.000 11.00 0.00 0.00 1.52
207 208 1.664873 GAGAGGGCCGGACATTAAAC 58.335 55.000 11.00 0.00 0.00 2.01
208 209 1.209747 GAGAGGGCCGGACATTAAACT 59.790 52.381 11.00 0.00 0.00 2.66
209 210 1.209747 AGAGGGCCGGACATTAAACTC 59.790 52.381 11.00 5.03 0.00 3.01
210 211 0.255033 AGGGCCGGACATTAAACTCC 59.745 55.000 11.00 0.00 0.00 3.85
211 212 0.034863 GGGCCGGACATTAAACTCCA 60.035 55.000 11.00 0.00 0.00 3.86
212 213 1.614850 GGGCCGGACATTAAACTCCAA 60.615 52.381 11.00 0.00 0.00 3.53
213 214 1.471287 GGCCGGACATTAAACTCCAAC 59.529 52.381 5.05 0.00 0.00 3.77
214 215 2.156098 GCCGGACATTAAACTCCAACA 58.844 47.619 5.05 0.00 0.00 3.33
235 236 2.292267 CATGGACCATAAGCCACAGTC 58.708 52.381 6.67 0.00 36.92 3.51
237 238 0.462047 GGACCATAAGCCACAGTCGG 60.462 60.000 0.00 0.00 0.00 4.79
255 256 0.676466 GGCATGTGACCGGACAATGA 60.676 55.000 22.57 8.11 0.00 2.57
256 257 1.164411 GCATGTGACCGGACAATGAA 58.836 50.000 22.57 7.47 0.00 2.57
298 300 8.884124 ACAAAATCTTCAAGAAGGGATTATCA 57.116 30.769 9.73 0.00 38.88 2.15
306 308 0.916086 AAGGGATTATCACACGGGCA 59.084 50.000 0.00 0.00 0.00 5.36
308 310 1.072331 AGGGATTATCACACGGGCATC 59.928 52.381 0.00 0.00 0.00 3.91
309 311 1.202758 GGGATTATCACACGGGCATCA 60.203 52.381 0.00 0.00 0.00 3.07
310 312 2.571212 GGATTATCACACGGGCATCAA 58.429 47.619 0.00 0.00 0.00 2.57
311 313 2.290641 GGATTATCACACGGGCATCAAC 59.709 50.000 0.00 0.00 0.00 3.18
327 329 3.121559 TCAACGTCGATAGGTACAACG 57.878 47.619 0.00 0.00 39.16 4.10
354 356 3.695830 TGAGCTTGGGATTTACGTTCT 57.304 42.857 0.00 0.00 0.00 3.01
398 400 2.065899 CCTTCAACAAGGGGACAACA 57.934 50.000 0.00 0.00 45.27 3.33
404 406 2.878406 CAACAAGGGGACAACACACTAG 59.122 50.000 0.00 0.00 0.00 2.57
428 430 4.571984 TGTGGAAAATGCATGATCTAGTCG 59.428 41.667 0.00 0.00 0.00 4.18
436 438 1.198867 CATGATCTAGTCGGAGGCGAG 59.801 57.143 0.00 0.00 36.95 5.03
440 442 0.468648 TCTAGTCGGAGGCGAGATCA 59.531 55.000 0.00 0.00 39.34 2.92
442 444 1.676529 CTAGTCGGAGGCGAGATCAAA 59.323 52.381 0.00 0.00 36.87 2.69
443 445 1.115467 AGTCGGAGGCGAGATCAAAT 58.885 50.000 0.00 0.00 36.95 2.32
448 450 3.118920 TCGGAGGCGAGATCAAATGTTTA 60.119 43.478 0.00 0.00 0.00 2.01
451 453 4.192317 GAGGCGAGATCAAATGTTTACCT 58.808 43.478 0.00 0.00 0.00 3.08
452 454 3.941483 AGGCGAGATCAAATGTTTACCTG 59.059 43.478 0.00 0.00 0.00 4.00
453 455 3.938963 GGCGAGATCAAATGTTTACCTGA 59.061 43.478 0.00 0.00 0.00 3.86
476 479 4.730657 GAGAATCTGCATCCTTGTTGTTG 58.269 43.478 0.00 0.00 0.00 3.33
479 482 4.778534 ATCTGCATCCTTGTTGTTGAAG 57.221 40.909 0.00 0.00 0.00 3.02
489 492 1.663643 TGTTGTTGAAGTCGTCACTGC 59.336 47.619 0.00 0.00 35.39 4.40
491 494 0.464036 TGTTGAAGTCGTCACTGCCT 59.536 50.000 0.00 0.00 35.39 4.75
493 496 0.464036 TTGAAGTCGTCACTGCCTGT 59.536 50.000 0.00 0.00 35.39 4.00
506 509 5.360144 GTCACTGCCTGTAACCTCTCTAATA 59.640 44.000 0.00 0.00 0.00 0.98
507 510 5.955959 TCACTGCCTGTAACCTCTCTAATAA 59.044 40.000 0.00 0.00 0.00 1.40
508 511 6.439375 TCACTGCCTGTAACCTCTCTAATAAA 59.561 38.462 0.00 0.00 0.00 1.40
509 512 7.038587 TCACTGCCTGTAACCTCTCTAATAAAA 60.039 37.037 0.00 0.00 0.00 1.52
536 539 2.879002 TCTTGCTAGCTGAATCTCGG 57.121 50.000 17.23 0.00 0.00 4.63
539 542 1.301322 GCTAGCTGAATCTCGGGGC 60.301 63.158 7.70 0.00 0.00 5.80
540 543 1.369321 CTAGCTGAATCTCGGGGCC 59.631 63.158 0.00 0.00 0.00 5.80
597 600 1.071385 ACACCAGAAGCAGGTTGAGAG 59.929 52.381 0.00 0.00 37.23 3.20
604 607 1.739562 GCAGGTTGAGAGCCTCACG 60.740 63.158 4.59 0.00 40.46 4.35
607 610 1.079750 GGTTGAGAGCCTCACGTCC 60.080 63.158 4.59 5.03 40.46 4.79
615 618 4.530857 CCTCACGTCCCCGCATCC 62.531 72.222 0.00 0.00 37.70 3.51
623 626 1.113517 GTCCCCGCATCCAGCTACTA 61.114 60.000 0.00 0.00 42.61 1.82
624 627 0.827925 TCCCCGCATCCAGCTACTAG 60.828 60.000 0.00 0.00 42.61 2.57
625 628 1.668294 CCCGCATCCAGCTACTAGG 59.332 63.158 0.00 0.00 42.61 3.02
643 646 2.208527 GGCACCACCTTCGATCCTA 58.791 57.895 0.00 0.00 34.51 2.94
653 656 1.000955 CTTCGATCCTAATCACCGGGG 59.999 57.143 6.32 0.00 31.76 5.73
655 658 1.119574 CGATCCTAATCACCGGGGGT 61.120 60.000 2.42 0.00 35.62 4.95
669 672 2.669240 GGGTGGGAGGGACGAAAG 59.331 66.667 0.00 0.00 0.00 2.62
671 674 1.295746 GGTGGGAGGGACGAAAGAC 59.704 63.158 0.00 0.00 0.00 3.01
688 691 2.298610 AGACGAAGGATATGTCGCTGA 58.701 47.619 0.00 0.00 40.95 4.26
846 874 2.746277 ATGTCAGAAACGCGGGCC 60.746 61.111 12.47 0.00 0.00 5.80
1029 1059 2.516048 TACTTCTCAGGCCGCTCCCT 62.516 60.000 0.00 0.00 34.93 4.20
1350 1380 1.890894 CGTCCTCGACACCATCCTT 59.109 57.895 0.00 0.00 39.71 3.36
1387 1417 1.679898 CCCACTCTTCGGAGGCTTT 59.320 57.895 0.00 0.00 45.78 3.51
1418 1448 0.592500 TCGCTAGCTTCGATTCTGCG 60.593 55.000 13.93 16.82 42.70 5.18
1430 1460 0.598065 ATTCTGCGTTTCTGGCAACC 59.402 50.000 0.00 0.00 40.39 3.77
1436 1466 4.671192 TGCGTTTCTGGCAACCTTTTGG 62.671 50.000 0.00 0.00 39.69 3.28
1438 1468 0.467804 TTTCTGGCAACCTTTTGGGC 59.532 50.000 0.00 0.00 46.08 5.36
1449 1479 2.852495 CTTTTGGGCCGCTAGCGAGA 62.852 60.000 37.39 15.24 45.17 4.04
1459 1489 1.739067 GCTAGCGAGAATGGTTGGTT 58.261 50.000 0.00 0.00 0.00 3.67
1504 1551 2.874701 GCTTCACAAGTCACTCATGTGT 59.125 45.455 9.07 0.00 43.51 3.72
1534 1581 6.364701 TGCCTGTAGAATGTAAATTGGCTAT 58.635 36.000 5.72 0.00 38.70 2.97
1668 1715 6.809196 CCTAGACACATTGTAGAGTTCAAGTC 59.191 42.308 0.00 0.00 0.00 3.01
1669 1716 6.161855 AGACACATTGTAGAGTTCAAGTCA 57.838 37.500 0.00 0.00 0.00 3.41
1671 1718 6.040955 AGACACATTGTAGAGTTCAAGTCAGA 59.959 38.462 0.00 0.00 0.00 3.27
1681 1728 4.197750 AGTTCAAGTCAGATCATGGCATC 58.802 43.478 0.00 0.00 35.29 3.91
1687 1734 4.221530 AGTCAGATCATGGCATCTACTCA 58.778 43.478 0.00 0.00 35.29 3.41
1749 1797 2.680312 TGCACTGATAGGTCTGCTTC 57.320 50.000 0.00 0.00 0.00 3.86
1750 1798 2.182827 TGCACTGATAGGTCTGCTTCT 58.817 47.619 0.00 0.00 0.00 2.85
2051 2099 2.781681 ATGGTTTAACAGGACCTCGG 57.218 50.000 0.00 0.00 36.86 4.63
2675 2724 8.094548 ACTATTTAAAATCAAGGTTTTCAGGGC 58.905 33.333 0.00 0.00 33.62 5.19
2947 2998 3.609853 TGTACCAATGTCTCAAGGCATC 58.390 45.455 0.00 0.00 0.00 3.91
2949 3000 1.019673 CCAATGTCTCAAGGCATCGG 58.980 55.000 0.00 0.00 0.00 4.18
3115 3166 6.540189 GTCAGGTAAGTTAGTGGTATACTCGA 59.460 42.308 2.25 0.00 40.89 4.04
3162 3213 6.791867 ACTTGGTGCTACTGTAGATATTCA 57.208 37.500 18.64 3.71 0.00 2.57
3456 3508 4.076394 TGTAGTGCAACCTAATGTTTCCC 58.924 43.478 0.00 0.00 37.80 3.97
3460 3512 5.390387 AGTGCAACCTAATGTTTCCCTTTA 58.610 37.500 0.00 0.00 37.80 1.85
3476 3528 7.916914 TTCCCTTTAATAGTAAGTTGACTGC 57.083 36.000 0.00 0.00 0.00 4.40
3523 3575 7.260603 CAAAGTGTTTCCTGGGATGATATTTC 58.739 38.462 0.00 0.00 0.00 2.17
3582 3634 9.162764 GCAAGTAAAGATGACTGGAGTTATTTA 57.837 33.333 0.00 0.00 0.00 1.40
3905 3957 6.313164 GCTGGATTAGTTGTGAAGGTAAGTAC 59.687 42.308 0.00 0.00 0.00 2.73
3996 4048 3.905968 ACCCAAATTTATTACCCCCTCG 58.094 45.455 0.00 0.00 0.00 4.63
4099 4151 3.632145 CACTTGTGGAAAACTTAGCCTGT 59.368 43.478 0.00 0.00 0.00 4.00
4143 4195 6.371278 AGTGGCATTTCTCATGGATAGAATT 58.629 36.000 0.00 0.00 33.17 2.17
4163 4215 7.845037 AGAATTTTCTCTGGATTTTTGGATCC 58.155 34.615 4.20 4.20 38.64 3.36
4421 4475 3.811083 TGACGGTACAAACATGAAACCT 58.189 40.909 0.00 0.00 0.00 3.50
4526 4580 1.359130 AGGTGGAGGGGAATTTCCTTG 59.641 52.381 14.95 0.00 36.57 3.61
4728 4783 6.983906 TGATATGATTCCAGTCTGAGCTTA 57.016 37.500 0.00 0.00 0.00 3.09
4853 4908 3.914435 AGTAAGTCCTTTTTCCCTGGCTA 59.086 43.478 0.00 0.00 0.00 3.93
4861 4916 1.271840 TTTCCCTGGCTATGGTCGCT 61.272 55.000 0.00 0.00 0.00 4.93
4877 4932 3.198068 GTCGCTGCTATCTCCATTTCAA 58.802 45.455 0.00 0.00 0.00 2.69
4886 4941 9.118300 CTGCTATCTCCATTTCAAATTTCTACT 57.882 33.333 0.00 0.00 0.00 2.57
4901 4956 1.064505 TCTACTACCGCGTTCCAATCG 59.935 52.381 4.92 0.00 0.00 3.34
5100 5161 1.160137 CTGACCACTTGTTAGGCTGC 58.840 55.000 0.00 0.00 0.00 5.25
5223 5284 0.034380 AGGTGTCCTAGCTAGTCGCA 60.034 55.000 19.31 11.63 42.61 5.10
5224 5285 0.382515 GGTGTCCTAGCTAGTCGCAG 59.617 60.000 19.31 3.92 42.61 5.18
5225 5286 0.248702 GTGTCCTAGCTAGTCGCAGC 60.249 60.000 19.31 3.79 42.61 5.25
5228 5289 2.482333 CCTAGCTAGTCGCAGCCGT 61.482 63.158 19.31 0.00 42.84 5.68
5256 5317 5.144100 TGACTGTACAATTTTGGTCCCAAT 58.856 37.500 0.00 0.00 35.70 3.16
5337 5398 1.135083 CCCTCGTCATGGTAGTGTCAC 60.135 57.143 0.00 0.00 0.00 3.67
5338 5399 1.819288 CCTCGTCATGGTAGTGTCACT 59.181 52.381 10.99 10.99 0.00 3.41
5339 5400 2.416027 CCTCGTCATGGTAGTGTCACTG 60.416 54.545 16.03 0.00 0.00 3.66
5340 5401 2.488153 CTCGTCATGGTAGTGTCACTGA 59.512 50.000 16.03 1.72 0.00 3.41
5341 5402 2.488153 TCGTCATGGTAGTGTCACTGAG 59.512 50.000 16.03 1.29 0.00 3.35
5342 5403 2.488153 CGTCATGGTAGTGTCACTGAGA 59.512 50.000 16.03 3.56 0.00 3.27
5343 5404 3.057526 CGTCATGGTAGTGTCACTGAGAA 60.058 47.826 16.03 0.00 0.00 2.87
5344 5405 4.489810 GTCATGGTAGTGTCACTGAGAAG 58.510 47.826 16.03 3.33 0.00 2.85
5345 5406 3.511540 TCATGGTAGTGTCACTGAGAAGG 59.488 47.826 16.03 1.02 0.00 3.46
5346 5407 2.958818 TGGTAGTGTCACTGAGAAGGT 58.041 47.619 16.03 0.00 0.00 3.50
5347 5408 4.108501 TGGTAGTGTCACTGAGAAGGTA 57.891 45.455 16.03 0.00 0.00 3.08
5348 5409 4.079970 TGGTAGTGTCACTGAGAAGGTAG 58.920 47.826 16.03 0.00 0.00 3.18
5349 5410 4.080687 GGTAGTGTCACTGAGAAGGTAGT 58.919 47.826 16.03 0.00 0.00 2.73
5350 5411 4.082679 GGTAGTGTCACTGAGAAGGTAGTG 60.083 50.000 16.03 0.00 44.31 2.74
5351 5412 3.567397 AGTGTCACTGAGAAGGTAGTGT 58.433 45.455 4.21 0.00 43.59 3.55
5352 5413 3.570550 AGTGTCACTGAGAAGGTAGTGTC 59.429 47.826 4.21 0.00 43.59 3.67
5353 5414 3.318275 GTGTCACTGAGAAGGTAGTGTCA 59.682 47.826 0.00 0.00 43.59 3.58
5394 5455 0.306228 CCACATGTCGTTGACGCAAA 59.694 50.000 0.00 0.00 39.60 3.68
5418 5479 2.436417 TGAGAAAGTATTGCAGTGGCC 58.564 47.619 0.00 0.00 40.13 5.36
5499 5562 4.254492 CTCTCTTACCAGGCCTTGTTAAC 58.746 47.826 15.73 0.00 0.00 2.01
5672 5736 5.742453 GTGAAATGCTGAATACTTGCATCAG 59.258 40.000 9.46 9.46 45.29 2.90
6077 6541 0.250209 CGCCATGCTCCTTCTGCTAT 60.250 55.000 0.00 0.00 0.00 2.97
6125 6589 2.138596 CACAACAACATTGTGGAGCC 57.861 50.000 11.16 0.00 44.33 4.70
6136 6600 0.904865 TGTGGAGCCAGAGTACCCTG 60.905 60.000 0.00 0.00 0.00 4.45
6178 6646 0.546747 CTCCCCACCAGTAACTCCCA 60.547 60.000 0.00 0.00 0.00 4.37
6202 6670 2.762327 TCCTTGGTGATCCTACCGTTAC 59.238 50.000 0.00 0.00 43.87 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.992073 GCTTGGATTTTCTTAACATTGTTGAAT 58.008 29.630 12.30 4.90 0.00 2.57
15 16 7.168972 CGCTTGGATTTTCTTAACATTGTTGAA 59.831 33.333 12.30 5.38 0.00 2.69
16 17 6.640499 CGCTTGGATTTTCTTAACATTGTTGA 59.360 34.615 12.30 3.02 0.00 3.18
17 18 6.420604 ACGCTTGGATTTTCTTAACATTGTTG 59.579 34.615 12.30 0.00 0.00 3.33
18 19 6.512297 ACGCTTGGATTTTCTTAACATTGTT 58.488 32.000 7.30 7.30 0.00 2.83
19 20 6.084326 ACGCTTGGATTTTCTTAACATTGT 57.916 33.333 0.00 0.00 0.00 2.71
20 21 5.283717 CGACGCTTGGATTTTCTTAACATTG 59.716 40.000 0.00 0.00 0.00 2.82
21 22 5.180492 TCGACGCTTGGATTTTCTTAACATT 59.820 36.000 0.00 0.00 0.00 2.71
22 23 4.693566 TCGACGCTTGGATTTTCTTAACAT 59.306 37.500 0.00 0.00 0.00 2.71
23 24 4.059511 TCGACGCTTGGATTTTCTTAACA 58.940 39.130 0.00 0.00 0.00 2.41
24 25 4.657075 TCGACGCTTGGATTTTCTTAAC 57.343 40.909 0.00 0.00 0.00 2.01
25 26 5.676532 TTTCGACGCTTGGATTTTCTTAA 57.323 34.783 0.00 0.00 0.00 1.85
26 27 5.391523 CCATTTCGACGCTTGGATTTTCTTA 60.392 40.000 5.01 0.00 0.00 2.10
27 28 4.475944 CATTTCGACGCTTGGATTTTCTT 58.524 39.130 0.00 0.00 0.00 2.52
28 29 3.119849 CCATTTCGACGCTTGGATTTTCT 60.120 43.478 5.01 0.00 0.00 2.52
29 30 3.119990 TCCATTTCGACGCTTGGATTTTC 60.120 43.478 8.56 0.00 33.40 2.29
30 31 2.817258 TCCATTTCGACGCTTGGATTTT 59.183 40.909 8.56 0.00 33.40 1.82
31 32 2.432444 TCCATTTCGACGCTTGGATTT 58.568 42.857 8.56 0.00 33.40 2.17
32 33 2.107950 TCCATTTCGACGCTTGGATT 57.892 45.000 8.56 0.00 33.40 3.01
33 34 1.737793 GTTCCATTTCGACGCTTGGAT 59.262 47.619 12.12 0.00 38.04 3.41
34 35 1.153353 GTTCCATTTCGACGCTTGGA 58.847 50.000 8.56 8.56 36.49 3.53
35 36 0.871722 TGTTCCATTTCGACGCTTGG 59.128 50.000 0.00 0.00 0.00 3.61
36 37 2.307049 GTTGTTCCATTTCGACGCTTG 58.693 47.619 0.00 0.00 0.00 4.01
37 38 1.265905 GGTTGTTCCATTTCGACGCTT 59.734 47.619 0.00 0.00 35.97 4.68
38 39 0.872388 GGTTGTTCCATTTCGACGCT 59.128 50.000 0.00 0.00 35.97 5.07
39 40 0.452122 CGGTTGTTCCATTTCGACGC 60.452 55.000 0.00 0.00 35.57 5.19
40 41 0.165079 CCGGTTGTTCCATTTCGACG 59.835 55.000 0.00 0.00 35.57 5.12
41 42 1.232119 ACCGGTTGTTCCATTTCGAC 58.768 50.000 0.00 0.00 35.57 4.20
42 43 1.970092 AACCGGTTGTTCCATTTCGA 58.030 45.000 21.56 0.00 35.57 3.71
43 44 2.785713 AAACCGGTTGTTCCATTTCG 57.214 45.000 23.08 0.00 35.67 3.46
44 45 6.746745 TCTATAAACCGGTTGTTCCATTTC 57.253 37.500 23.08 0.00 35.67 2.17
45 46 7.527568 TTTCTATAAACCGGTTGTTCCATTT 57.472 32.000 23.08 4.68 35.67 2.32
46 47 7.527568 TTTTCTATAAACCGGTTGTTCCATT 57.472 32.000 23.08 5.53 35.67 3.16
47 48 7.527568 TTTTTCTATAAACCGGTTGTTCCAT 57.472 32.000 23.08 6.37 35.67 3.41
48 49 6.956202 TTTTTCTATAAACCGGTTGTTCCA 57.044 33.333 23.08 4.42 35.67 3.53
65 66 9.479549 TGGCCTCAATTTCTTCTATATTTTTCT 57.520 29.630 3.32 0.00 0.00 2.52
68 69 9.652114 AGATGGCCTCAATTTCTTCTATATTTT 57.348 29.630 3.32 0.00 0.00 1.82
69 70 9.075678 CAGATGGCCTCAATTTCTTCTATATTT 57.924 33.333 3.32 0.00 0.00 1.40
70 71 8.223330 ACAGATGGCCTCAATTTCTTCTATATT 58.777 33.333 3.32 0.00 0.00 1.28
71 72 7.753630 ACAGATGGCCTCAATTTCTTCTATAT 58.246 34.615 3.32 0.00 0.00 0.86
72 73 7.071698 AGACAGATGGCCTCAATTTCTTCTATA 59.928 37.037 3.32 0.00 0.00 1.31
73 74 6.011122 ACAGATGGCCTCAATTTCTTCTAT 57.989 37.500 3.32 0.00 0.00 1.98
74 75 5.190528 AGACAGATGGCCTCAATTTCTTCTA 59.809 40.000 3.32 0.00 0.00 2.10
75 76 4.018597 AGACAGATGGCCTCAATTTCTTCT 60.019 41.667 3.32 1.21 0.00 2.85
76 77 4.268359 AGACAGATGGCCTCAATTTCTTC 58.732 43.478 3.32 0.00 0.00 2.87
77 78 4.263639 TGAGACAGATGGCCTCAATTTCTT 60.264 41.667 3.32 0.00 34.38 2.52
78 79 3.265221 TGAGACAGATGGCCTCAATTTCT 59.735 43.478 3.32 0.00 34.38 2.52
79 80 3.614092 TGAGACAGATGGCCTCAATTTC 58.386 45.455 3.32 0.00 34.38 2.17
80 81 3.726557 TGAGACAGATGGCCTCAATTT 57.273 42.857 3.32 0.00 34.38 1.82
81 82 3.618351 CTTGAGACAGATGGCCTCAATT 58.382 45.455 3.32 0.00 43.41 2.32
82 83 2.683152 GCTTGAGACAGATGGCCTCAAT 60.683 50.000 3.32 0.00 43.41 2.57
83 84 1.339438 GCTTGAGACAGATGGCCTCAA 60.339 52.381 3.32 14.76 42.55 3.02
84 85 0.251354 GCTTGAGACAGATGGCCTCA 59.749 55.000 3.32 0.00 35.38 3.86
85 86 0.251354 TGCTTGAGACAGATGGCCTC 59.749 55.000 3.32 0.00 0.00 4.70
86 87 0.694771 TTGCTTGAGACAGATGGCCT 59.305 50.000 3.32 0.00 0.00 5.19
87 88 1.760192 ATTGCTTGAGACAGATGGCC 58.240 50.000 0.00 0.00 0.00 5.36
88 89 4.387598 AGATATTGCTTGAGACAGATGGC 58.612 43.478 0.00 0.00 0.00 4.40
89 90 4.996122 GGAGATATTGCTTGAGACAGATGG 59.004 45.833 0.00 0.00 0.00 3.51
90 91 5.466058 GTGGAGATATTGCTTGAGACAGATG 59.534 44.000 0.00 0.00 0.00 2.90
91 92 5.129980 TGTGGAGATATTGCTTGAGACAGAT 59.870 40.000 0.00 0.00 0.00 2.90
92 93 4.467438 TGTGGAGATATTGCTTGAGACAGA 59.533 41.667 0.00 0.00 0.00 3.41
93 94 4.763073 TGTGGAGATATTGCTTGAGACAG 58.237 43.478 0.00 0.00 0.00 3.51
94 95 4.824479 TGTGGAGATATTGCTTGAGACA 57.176 40.909 0.00 0.00 0.00 3.41
95 96 6.317857 GTTTTGTGGAGATATTGCTTGAGAC 58.682 40.000 0.00 0.00 0.00 3.36
96 97 5.415701 GGTTTTGTGGAGATATTGCTTGAGA 59.584 40.000 0.00 0.00 0.00 3.27
97 98 5.183713 TGGTTTTGTGGAGATATTGCTTGAG 59.816 40.000 0.00 0.00 0.00 3.02
98 99 5.076182 TGGTTTTGTGGAGATATTGCTTGA 58.924 37.500 0.00 0.00 0.00 3.02
99 100 5.389859 TGGTTTTGTGGAGATATTGCTTG 57.610 39.130 0.00 0.00 0.00 4.01
100 101 4.082026 GCTGGTTTTGTGGAGATATTGCTT 60.082 41.667 0.00 0.00 0.00 3.91
101 102 3.445096 GCTGGTTTTGTGGAGATATTGCT 59.555 43.478 0.00 0.00 0.00 3.91
102 103 3.445096 AGCTGGTTTTGTGGAGATATTGC 59.555 43.478 0.00 0.00 0.00 3.56
103 104 4.676196 GCAGCTGGTTTTGTGGAGATATTG 60.676 45.833 17.12 0.00 0.00 1.90
104 105 3.445096 GCAGCTGGTTTTGTGGAGATATT 59.555 43.478 17.12 0.00 0.00 1.28
105 106 3.019564 GCAGCTGGTTTTGTGGAGATAT 58.980 45.455 17.12 0.00 0.00 1.63
106 107 2.436417 GCAGCTGGTTTTGTGGAGATA 58.564 47.619 17.12 0.00 0.00 1.98
107 108 1.251251 GCAGCTGGTTTTGTGGAGAT 58.749 50.000 17.12 0.00 0.00 2.75
108 109 0.823356 GGCAGCTGGTTTTGTGGAGA 60.823 55.000 17.12 0.00 0.00 3.71
109 110 1.662044 GGCAGCTGGTTTTGTGGAG 59.338 57.895 17.12 0.00 0.00 3.86
110 111 1.832167 GGGCAGCTGGTTTTGTGGA 60.832 57.895 17.12 0.00 0.00 4.02
111 112 1.474332 ATGGGCAGCTGGTTTTGTGG 61.474 55.000 17.12 0.00 0.00 4.17
112 113 0.320073 CATGGGCAGCTGGTTTTGTG 60.320 55.000 17.12 0.00 0.00 3.33
113 114 1.474332 CCATGGGCAGCTGGTTTTGT 61.474 55.000 17.12 0.00 0.00 2.83
114 115 1.186917 TCCATGGGCAGCTGGTTTTG 61.187 55.000 17.12 0.00 34.03 2.44
115 116 0.901580 CTCCATGGGCAGCTGGTTTT 60.902 55.000 17.12 0.00 34.03 2.43
116 117 1.304713 CTCCATGGGCAGCTGGTTT 60.305 57.895 17.12 0.00 34.03 3.27
117 118 2.357836 CTCCATGGGCAGCTGGTT 59.642 61.111 17.12 0.00 34.03 3.67
118 119 3.736224 CCTCCATGGGCAGCTGGT 61.736 66.667 17.12 0.00 34.03 4.00
126 127 0.107017 CTACACCAAGCCTCCATGGG 60.107 60.000 13.02 2.26 41.17 4.00
127 128 0.911769 TCTACACCAAGCCTCCATGG 59.088 55.000 4.97 4.97 42.60 3.66
128 129 2.026822 ACTTCTACACCAAGCCTCCATG 60.027 50.000 0.00 0.00 0.00 3.66
129 130 2.026822 CACTTCTACACCAAGCCTCCAT 60.027 50.000 0.00 0.00 0.00 3.41
130 131 1.347707 CACTTCTACACCAAGCCTCCA 59.652 52.381 0.00 0.00 0.00 3.86
131 132 1.623811 TCACTTCTACACCAAGCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
132 133 3.402628 TTCACTTCTACACCAAGCCTC 57.597 47.619 0.00 0.00 0.00 4.70
133 134 4.042187 AGAATTCACTTCTACACCAAGCCT 59.958 41.667 8.44 0.00 42.56 4.58
134 135 4.327680 AGAATTCACTTCTACACCAAGCC 58.672 43.478 8.44 0.00 42.56 4.35
135 136 5.241662 AGAGAATTCACTTCTACACCAAGC 58.758 41.667 8.44 0.00 44.42 4.01
136 137 6.533367 GCTAGAGAATTCACTTCTACACCAAG 59.467 42.308 10.78 0.68 44.42 3.61
137 138 6.398918 GCTAGAGAATTCACTTCTACACCAA 58.601 40.000 10.78 0.00 44.42 3.67
138 139 5.105310 GGCTAGAGAATTCACTTCTACACCA 60.105 44.000 10.78 0.00 44.42 4.17
139 140 5.105310 TGGCTAGAGAATTCACTTCTACACC 60.105 44.000 10.78 9.61 44.42 4.16
140 141 5.967088 TGGCTAGAGAATTCACTTCTACAC 58.033 41.667 10.78 2.68 44.42 2.90
141 142 6.605471 TTGGCTAGAGAATTCACTTCTACA 57.395 37.500 10.78 3.55 44.42 2.74
142 143 6.018343 GCATTGGCTAGAGAATTCACTTCTAC 60.018 42.308 10.78 3.47 39.69 2.59
143 144 6.051717 GCATTGGCTAGAGAATTCACTTCTA 58.948 40.000 10.78 6.71 39.69 2.10
144 145 4.880696 GCATTGGCTAGAGAATTCACTTCT 59.119 41.667 10.78 5.88 41.17 2.85
145 146 4.637534 TGCATTGGCTAGAGAATTCACTTC 59.362 41.667 10.78 3.94 41.91 3.01
146 147 4.592942 TGCATTGGCTAGAGAATTCACTT 58.407 39.130 10.78 0.00 41.91 3.16
147 148 4.226427 TGCATTGGCTAGAGAATTCACT 57.774 40.909 10.36 10.36 41.91 3.41
148 149 4.156556 TGTTGCATTGGCTAGAGAATTCAC 59.843 41.667 8.44 0.74 41.91 3.18
149 150 4.334552 TGTTGCATTGGCTAGAGAATTCA 58.665 39.130 8.44 0.00 41.91 2.57
150 151 4.970662 TGTTGCATTGGCTAGAGAATTC 57.029 40.909 0.00 0.00 41.91 2.17
151 152 5.726980 TTTGTTGCATTGGCTAGAGAATT 57.273 34.783 0.00 0.00 41.91 2.17
152 153 5.477984 TCTTTTGTTGCATTGGCTAGAGAAT 59.522 36.000 0.00 0.00 41.91 2.40
153 154 4.826733 TCTTTTGTTGCATTGGCTAGAGAA 59.173 37.500 0.00 0.00 41.91 2.87
154 155 4.216257 GTCTTTTGTTGCATTGGCTAGAGA 59.784 41.667 0.00 0.00 41.91 3.10
155 156 4.479619 GTCTTTTGTTGCATTGGCTAGAG 58.520 43.478 0.00 0.00 41.91 2.43
156 157 3.255642 GGTCTTTTGTTGCATTGGCTAGA 59.744 43.478 0.00 0.00 41.91 2.43
157 158 3.005684 TGGTCTTTTGTTGCATTGGCTAG 59.994 43.478 0.00 0.00 41.91 3.42
158 159 2.961741 TGGTCTTTTGTTGCATTGGCTA 59.038 40.909 0.00 0.00 41.91 3.93
159 160 1.761784 TGGTCTTTTGTTGCATTGGCT 59.238 42.857 0.00 0.00 41.91 4.75
160 161 2.237393 TGGTCTTTTGTTGCATTGGC 57.763 45.000 0.00 0.00 41.68 4.52
161 162 4.449743 CAGATTGGTCTTTTGTTGCATTGG 59.550 41.667 0.00 0.00 30.42 3.16
162 163 5.050634 CACAGATTGGTCTTTTGTTGCATTG 60.051 40.000 0.00 0.00 30.42 2.82
163 164 5.051816 CACAGATTGGTCTTTTGTTGCATT 58.948 37.500 0.00 0.00 30.42 3.56
164 165 4.501915 CCACAGATTGGTCTTTTGTTGCAT 60.502 41.667 0.00 0.00 41.10 3.96
165 166 3.181477 CCACAGATTGGTCTTTTGTTGCA 60.181 43.478 0.00 0.00 41.10 4.08
166 167 3.383761 CCACAGATTGGTCTTTTGTTGC 58.616 45.455 0.00 0.00 41.10 4.17
167 168 3.636300 TCCCACAGATTGGTCTTTTGTTG 59.364 43.478 0.00 0.00 45.25 3.33
168 169 3.891366 CTCCCACAGATTGGTCTTTTGTT 59.109 43.478 0.00 0.00 45.25 2.83
169 170 3.138283 TCTCCCACAGATTGGTCTTTTGT 59.862 43.478 0.00 0.00 45.25 2.83
170 171 3.754965 TCTCCCACAGATTGGTCTTTTG 58.245 45.455 0.00 0.00 45.25 2.44
171 172 3.245052 CCTCTCCCACAGATTGGTCTTTT 60.245 47.826 0.00 0.00 45.25 2.27
172 173 2.307098 CCTCTCCCACAGATTGGTCTTT 59.693 50.000 0.00 0.00 45.25 2.52
173 174 1.912043 CCTCTCCCACAGATTGGTCTT 59.088 52.381 0.00 0.00 45.25 3.01
174 175 1.577736 CCTCTCCCACAGATTGGTCT 58.422 55.000 0.00 0.00 45.25 3.85
175 176 0.543749 CCCTCTCCCACAGATTGGTC 59.456 60.000 0.00 0.00 45.25 4.02
176 177 1.566298 GCCCTCTCCCACAGATTGGT 61.566 60.000 0.00 0.00 45.25 3.67
177 178 1.225704 GCCCTCTCCCACAGATTGG 59.774 63.158 0.00 0.00 46.47 3.16
178 179 1.225704 GGCCCTCTCCCACAGATTG 59.774 63.158 0.00 0.00 0.00 2.67
179 180 2.370445 CGGCCCTCTCCCACAGATT 61.370 63.158 0.00 0.00 0.00 2.40
180 181 2.765807 CGGCCCTCTCCCACAGAT 60.766 66.667 0.00 0.00 0.00 2.90
185 186 2.539277 TAATGTCCGGCCCTCTCCCA 62.539 60.000 0.00 0.00 0.00 4.37
186 187 1.342672 TTAATGTCCGGCCCTCTCCC 61.343 60.000 0.00 0.00 0.00 4.30
187 188 0.544697 TTTAATGTCCGGCCCTCTCC 59.455 55.000 0.00 0.00 0.00 3.71
188 189 1.209747 AGTTTAATGTCCGGCCCTCTC 59.790 52.381 0.00 0.00 0.00 3.20
189 190 1.209747 GAGTTTAATGTCCGGCCCTCT 59.790 52.381 0.00 0.00 0.00 3.69
190 191 1.664873 GAGTTTAATGTCCGGCCCTC 58.335 55.000 0.00 0.00 0.00 4.30
191 192 0.255033 GGAGTTTAATGTCCGGCCCT 59.745 55.000 0.00 0.00 0.00 5.19
192 193 0.034863 TGGAGTTTAATGTCCGGCCC 60.035 55.000 0.00 0.00 35.37 5.80
193 194 1.471287 GTTGGAGTTTAATGTCCGGCC 59.529 52.381 0.00 0.00 35.37 6.13
194 195 2.095415 GTGTTGGAGTTTAATGTCCGGC 60.095 50.000 0.00 0.00 35.37 6.13
195 196 3.142951 TGTGTTGGAGTTTAATGTCCGG 58.857 45.455 0.00 0.00 35.37 5.14
196 197 4.722194 CATGTGTTGGAGTTTAATGTCCG 58.278 43.478 0.45 0.00 35.37 4.79
210 211 2.164219 GTGGCTTATGGTCCATGTGTTG 59.836 50.000 15.10 1.47 34.47 3.33
211 212 2.224992 TGTGGCTTATGGTCCATGTGTT 60.225 45.455 15.10 0.00 34.47 3.32
212 213 1.354031 TGTGGCTTATGGTCCATGTGT 59.646 47.619 15.10 0.00 34.47 3.72
213 214 2.019249 CTGTGGCTTATGGTCCATGTG 58.981 52.381 15.10 7.96 34.47 3.21
214 215 1.635487 ACTGTGGCTTATGGTCCATGT 59.365 47.619 15.10 0.00 34.47 3.21
237 238 1.164411 TTCATTGTCCGGTCACATGC 58.836 50.000 0.00 0.00 0.00 4.06
245 246 5.293569 GGATAAGTGTACTTTCATTGTCCGG 59.706 44.000 2.20 0.00 37.40 5.14
246 247 6.106673 AGGATAAGTGTACTTTCATTGTCCG 58.893 40.000 2.20 0.00 37.40 4.79
248 249 9.303537 GTCTAGGATAAGTGTACTTTCATTGTC 57.696 37.037 2.20 0.00 37.40 3.18
279 281 5.419542 CGTGTGATAATCCCTTCTTGAAGA 58.580 41.667 11.53 0.00 0.00 2.87
280 282 4.572389 CCGTGTGATAATCCCTTCTTGAAG 59.428 45.833 3.55 3.55 0.00 3.02
289 291 1.202758 TGATGCCCGTGTGATAATCCC 60.203 52.381 0.00 0.00 0.00 3.85
298 300 2.501223 ATCGACGTTGATGCCCGTGT 62.501 55.000 17.66 0.00 37.44 4.49
306 308 3.374988 TCGTTGTACCTATCGACGTTGAT 59.625 43.478 21.66 21.66 41.62 2.57
308 310 3.121559 TCGTTGTACCTATCGACGTTG 57.878 47.619 0.00 0.00 41.62 4.10
309 311 3.829886 TTCGTTGTACCTATCGACGTT 57.170 42.857 0.00 0.00 41.62 3.99
310 312 3.829886 TTTCGTTGTACCTATCGACGT 57.170 42.857 0.00 0.00 41.62 4.34
311 313 4.100529 ACATTTCGTTGTACCTATCGACG 58.899 43.478 0.00 0.00 42.07 5.12
327 329 5.095490 CGTAAATCCCAAGCTCAACATTTC 58.905 41.667 0.00 0.00 0.00 2.17
373 375 1.566703 TCCCCTTGTTGAAGGTGTTCA 59.433 47.619 0.00 0.00 46.84 3.18
398 400 4.397420 TCATGCATTTTCCACACTAGTGT 58.603 39.130 22.95 22.95 44.39 3.55
404 406 5.503031 CGACTAGATCATGCATTTTCCACAC 60.503 44.000 0.00 0.00 0.00 3.82
420 422 1.072489 TGATCTCGCCTCCGACTAGAT 59.928 52.381 0.00 0.00 38.82 1.98
428 430 3.312697 GGTAAACATTTGATCTCGCCTCC 59.687 47.826 0.00 0.00 0.00 4.30
436 438 8.610896 CAGATTCTCTCAGGTAAACATTTGATC 58.389 37.037 0.00 0.00 0.00 2.92
440 442 6.240894 TGCAGATTCTCTCAGGTAAACATTT 58.759 36.000 0.00 0.00 0.00 2.32
442 444 5.426689 TGCAGATTCTCTCAGGTAAACAT 57.573 39.130 0.00 0.00 0.00 2.71
443 445 4.890158 TGCAGATTCTCTCAGGTAAACA 57.110 40.909 0.00 0.00 0.00 2.83
448 450 2.761809 AGGATGCAGATTCTCTCAGGT 58.238 47.619 0.00 0.00 0.00 4.00
451 453 4.259356 CAACAAGGATGCAGATTCTCTCA 58.741 43.478 0.00 0.00 0.00 3.27
452 454 4.260170 ACAACAAGGATGCAGATTCTCTC 58.740 43.478 0.00 0.00 0.00 3.20
453 455 4.298103 ACAACAAGGATGCAGATTCTCT 57.702 40.909 0.00 0.00 0.00 3.10
474 477 0.464036 ACAGGCAGTGACGACTTCAA 59.536 50.000 0.00 0.00 35.39 2.69
475 478 1.324383 TACAGGCAGTGACGACTTCA 58.676 50.000 0.00 0.00 0.00 3.02
476 479 2.059541 GTTACAGGCAGTGACGACTTC 58.940 52.381 0.00 0.00 0.00 3.01
479 482 0.317479 AGGTTACAGGCAGTGACGAC 59.683 55.000 0.00 0.00 37.59 4.34
489 492 7.764901 GGTGTCTTTTATTAGAGAGGTTACAGG 59.235 40.741 0.00 0.00 0.00 4.00
491 494 8.431910 AGGTGTCTTTTATTAGAGAGGTTACA 57.568 34.615 0.00 0.00 0.00 2.41
493 496 9.322769 AGAAGGTGTCTTTTATTAGAGAGGTTA 57.677 33.333 0.00 0.00 29.66 2.85
506 509 3.817647 CAGCTAGCAAGAAGGTGTCTTTT 59.182 43.478 18.83 0.00 44.64 2.27
507 510 3.071602 TCAGCTAGCAAGAAGGTGTCTTT 59.928 43.478 18.83 0.00 44.64 2.52
509 512 2.251818 TCAGCTAGCAAGAAGGTGTCT 58.748 47.619 18.83 0.00 41.92 3.41
539 542 2.182030 GACGTTGGGCTCTCTCGG 59.818 66.667 0.00 0.00 0.00 4.63
540 543 2.182030 GGACGTTGGGCTCTCTCG 59.818 66.667 0.00 0.00 0.00 4.04
571 574 2.576615 ACCTGCTTCTGGTGTTTTCTC 58.423 47.619 0.00 0.00 34.44 2.87
615 618 0.978146 AGGTGGTGCCCTAGTAGCTG 60.978 60.000 0.00 0.00 38.26 4.24
623 626 2.670148 GGATCGAAGGTGGTGCCCT 61.670 63.158 0.00 0.00 38.26 5.19
624 627 1.335132 TAGGATCGAAGGTGGTGCCC 61.335 60.000 0.00 0.00 38.26 5.36
625 628 0.539986 TTAGGATCGAAGGTGGTGCC 59.460 55.000 0.00 0.00 37.58 5.01
653 656 1.295746 GTCTTTCGTCCCTCCCACC 59.704 63.158 0.00 0.00 0.00 4.61
655 658 0.828762 TTCGTCTTTCGTCCCTCCCA 60.829 55.000 0.00 0.00 40.80 4.37
666 669 3.130516 TCAGCGACATATCCTTCGTCTTT 59.869 43.478 0.00 0.00 37.56 2.52
669 672 2.776312 TCAGCGACATATCCTTCGTC 57.224 50.000 0.00 0.00 37.56 4.20
671 674 1.789464 GCTTCAGCGACATATCCTTCG 59.211 52.381 0.00 0.00 38.31 3.79
808 836 7.094162 TGACATCTACTTCACCAACAACAAAAA 60.094 33.333 0.00 0.00 0.00 1.94
812 840 5.029807 TGACATCTACTTCACCAACAACA 57.970 39.130 0.00 0.00 0.00 3.33
813 841 5.297547 TCTGACATCTACTTCACCAACAAC 58.702 41.667 0.00 0.00 0.00 3.32
816 844 5.107453 CGTTTCTGACATCTACTTCACCAAC 60.107 44.000 0.00 0.00 0.00 3.77
825 853 1.278238 CCCGCGTTTCTGACATCTAC 58.722 55.000 4.92 0.00 0.00 2.59
827 855 1.741770 GCCCGCGTTTCTGACATCT 60.742 57.895 4.92 0.00 0.00 2.90
846 874 4.904466 CGGGTTCCGGTCTACAAG 57.096 61.111 0.00 0.00 44.15 3.16
1387 1417 1.067142 AGCTAGCGATCACCGAAAACA 60.067 47.619 9.55 0.00 41.76 2.83
1418 1448 1.810031 GCCCAAAAGGTTGCCAGAAAC 60.810 52.381 0.00 0.00 38.26 2.78
1430 1460 2.435938 TCGCTAGCGGCCCAAAAG 60.436 61.111 34.76 5.69 40.25 2.27
1436 1466 2.663188 CCATTCTCGCTAGCGGCC 60.663 66.667 34.76 0.00 40.25 6.13
1438 1468 1.154205 CCAACCATTCTCGCTAGCGG 61.154 60.000 34.76 24.91 40.25 5.52
1449 1479 5.927819 ACATGTGAAAATCAACCAACCATT 58.072 33.333 0.00 0.00 0.00 3.16
1459 1489 8.427276 AGCTATCTCATCTACATGTGAAAATCA 58.573 33.333 9.11 0.00 36.38 2.57
1504 1551 0.325933 ACATTCTACAGGCAGCAGCA 59.674 50.000 2.65 0.00 44.61 4.41
1539 1586 4.022935 CCAATGAAAGCAGCACTTGTAAGA 60.023 41.667 0.00 0.00 39.09 2.10
1668 1715 6.262496 ACAATTTGAGTAGATGCCATGATCTG 59.738 38.462 2.79 0.00 34.42 2.90
1669 1716 6.363065 ACAATTTGAGTAGATGCCATGATCT 58.637 36.000 2.79 0.00 36.61 2.75
1671 1718 8.701908 ATAACAATTTGAGTAGATGCCATGAT 57.298 30.769 2.79 0.00 0.00 2.45
1749 1797 6.789262 AGGCGATGAAAATAAACAGATTCAG 58.211 36.000 0.00 0.00 35.47 3.02
1750 1798 6.757897 AGGCGATGAAAATAAACAGATTCA 57.242 33.333 0.00 0.00 36.35 2.57
2051 2099 5.428253 TCTGCAGTTCCTTGACCAATATAC 58.572 41.667 14.67 0.00 0.00 1.47
2650 2699 7.275560 CGCCCTGAAAACCTTGATTTTAAATAG 59.724 37.037 0.00 0.00 31.90 1.73
2653 2702 5.293560 CGCCCTGAAAACCTTGATTTTAAA 58.706 37.500 0.00 0.00 31.90 1.52
2675 2724 0.107703 TCTGCCCTTCTGTTATGCCG 60.108 55.000 0.00 0.00 0.00 5.69
2873 2924 2.174360 GGGCAAGCTTCTTGGAGATTT 58.826 47.619 0.00 0.00 0.00 2.17
2947 2998 0.798776 GCAGGAGTGTTCAATCACCG 59.201 55.000 2.88 0.00 38.91 4.94
2949 3000 2.771089 TCTGCAGGAGTGTTCAATCAC 58.229 47.619 15.13 0.00 38.46 3.06
3050 3101 9.613428 TTAATACAGGATTACAGGTCAAATCAG 57.387 33.333 0.00 0.00 34.44 2.90
3090 3141 6.540189 TCGAGTATACCACTAACTTACCTGAC 59.460 42.308 0.00 0.00 37.72 3.51
3115 3166 2.985957 AAACACCTTTGCATGCAAGT 57.014 40.000 30.25 23.36 37.24 3.16
3456 3508 7.907214 ACTGGCAGTCAACTTACTATTAAAG 57.093 36.000 15.88 0.00 0.00 1.85
3460 3512 8.685838 TTTAAACTGGCAGTCAACTTACTATT 57.314 30.769 22.31 9.72 0.00 1.73
3669 3721 9.003658 ACAAAAAGACATTTCGATACTTCTCAT 57.996 29.630 0.00 0.00 0.00 2.90
3702 3754 9.803315 TTACAACAGAACAGATATGTAGATGAC 57.197 33.333 0.00 0.00 0.00 3.06
3996 4048 4.697352 AGCAGCGACAATTAATATGGATCC 59.303 41.667 4.20 4.20 0.00 3.36
4093 4145 5.864418 AATGATATTGATGCAAACAGGCT 57.136 34.783 0.00 0.00 34.04 4.58
4099 4151 6.535865 GCCACTCAAAATGATATTGATGCAAA 59.464 34.615 0.00 0.00 36.30 3.68
4163 4215 8.017418 AGAAGAATAGAGGGAGAACTGTATTG 57.983 38.462 0.00 0.00 37.14 1.90
4248 4302 7.040409 GGATACCATAAATTTGTCTTAGCAGGG 60.040 40.741 0.00 0.00 0.00 4.45
4464 4518 2.909006 CCCTGCCATCTCCAGTATACAT 59.091 50.000 5.50 0.00 0.00 2.29
4728 4783 8.466617 AGAAATACCTGTAAGATACACGAGAT 57.533 34.615 0.00 0.00 34.07 2.75
4801 4856 1.871676 GTTCTTGGAGTTTCGGTGGAC 59.128 52.381 0.00 0.00 0.00 4.02
4807 4862 7.364522 TGATTTATCAGTTCTTGGAGTTTCG 57.635 36.000 0.00 0.00 32.11 3.46
4839 4894 2.017049 CGACCATAGCCAGGGAAAAAG 58.983 52.381 0.00 0.00 0.00 2.27
4853 4908 1.346062 ATGGAGATAGCAGCGACCAT 58.654 50.000 0.00 0.00 33.98 3.55
4877 4932 3.598019 TGGAACGCGGTAGTAGAAATT 57.402 42.857 12.47 0.00 0.00 1.82
4886 4941 1.140161 CCTCGATTGGAACGCGGTA 59.860 57.895 12.47 0.00 32.09 4.02
5100 5161 0.964700 TGATATCCTGAGCTCCGCTG 59.035 55.000 12.15 0.00 39.88 5.18
5224 5285 0.878523 TTGTACAGTCAGCACACGGC 60.879 55.000 0.00 0.00 45.30 5.68
5225 5286 1.795768 ATTGTACAGTCAGCACACGG 58.204 50.000 0.00 0.00 0.00 4.94
5228 5289 3.951037 ACCAAAATTGTACAGTCAGCACA 59.049 39.130 0.00 0.00 0.00 4.57
5256 5317 7.054124 CCCAGTTGAGAAAGGCAAAGTATATA 58.946 38.462 0.00 0.00 0.00 0.86
5264 5325 2.746279 TTCCCAGTTGAGAAAGGCAA 57.254 45.000 0.00 0.00 0.00 4.52
5337 5398 4.075682 TCTCAGTGACACTACCTTCTCAG 58.924 47.826 8.02 0.00 0.00 3.35
5338 5399 4.100279 TCTCAGTGACACTACCTTCTCA 57.900 45.455 8.02 0.00 0.00 3.27
5339 5400 4.082463 CCTTCTCAGTGACACTACCTTCTC 60.082 50.000 8.02 0.00 0.00 2.87
5340 5401 3.829601 CCTTCTCAGTGACACTACCTTCT 59.170 47.826 8.02 0.00 0.00 2.85
5341 5402 3.574826 ACCTTCTCAGTGACACTACCTTC 59.425 47.826 8.02 0.00 0.00 3.46
5342 5403 3.322254 CACCTTCTCAGTGACACTACCTT 59.678 47.826 8.02 0.00 37.42 3.50
5343 5404 2.894126 CACCTTCTCAGTGACACTACCT 59.106 50.000 8.02 0.00 37.42 3.08
5344 5405 2.028930 CCACCTTCTCAGTGACACTACC 60.029 54.545 8.02 0.00 37.42 3.18
5345 5406 2.028930 CCCACCTTCTCAGTGACACTAC 60.029 54.545 8.02 0.00 37.42 2.73
5346 5407 2.248248 CCCACCTTCTCAGTGACACTA 58.752 52.381 8.02 0.00 37.42 2.74
5347 5408 1.051812 CCCACCTTCTCAGTGACACT 58.948 55.000 1.07 1.07 37.42 3.55
5348 5409 0.035458 CCCCACCTTCTCAGTGACAC 59.965 60.000 0.00 0.00 37.42 3.67
5349 5410 1.768684 GCCCCACCTTCTCAGTGACA 61.769 60.000 0.00 0.00 37.42 3.58
5350 5411 1.003233 GCCCCACCTTCTCAGTGAC 60.003 63.158 0.00 0.00 37.42 3.67
5351 5412 2.224159 GGCCCCACCTTCTCAGTGA 61.224 63.158 0.00 0.00 37.42 3.41
5352 5413 2.352805 GGCCCCACCTTCTCAGTG 59.647 66.667 0.00 0.00 34.51 3.66
5353 5414 2.121963 TGGCCCCACCTTCTCAGT 60.122 61.111 0.00 0.00 40.22 3.41
5394 5455 3.935203 CCACTGCAATACTTTCTCATCGT 59.065 43.478 0.00 0.00 0.00 3.73
5462 5525 2.029904 GAGAGCATTCGCGCAAGTCC 62.030 60.000 8.75 0.00 45.49 3.85
5499 5562 9.685828 TGATTCCTTTCGGTTAAACTTAATTTG 57.314 29.630 0.00 0.00 0.00 2.32
5547 5610 2.851263 ACCAAGTATTTCTCACCGCA 57.149 45.000 0.00 0.00 0.00 5.69
5672 5736 1.609208 ACACATCCAACCTTCACAGC 58.391 50.000 0.00 0.00 0.00 4.40
6077 6541 7.420002 CACAACTTCAGAAAATTCAGTGATGA 58.580 34.615 0.00 0.00 0.00 2.92
6125 6589 1.895798 TGAGCAAGACAGGGTACTCTG 59.104 52.381 21.54 21.54 40.40 3.35
6136 6600 3.188048 CACATTCTCCAACTGAGCAAGAC 59.812 47.826 0.00 0.00 41.18 3.01
6178 6646 1.831736 CGGTAGGATCACCAAGGACTT 59.168 52.381 3.35 0.00 38.61 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.