Multiple sequence alignment - TraesCS6B01G121800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G121800 chr6B 100.000 2492 0 0 1 2492 116365684 116368175 0.000000e+00 4602.0
1 TraesCS6B01G121800 chr6B 94.053 454 25 1 1072 1525 116460423 116460874 0.000000e+00 688.0
2 TraesCS6B01G121800 chr6B 92.191 461 27 4 1071 1525 116424828 116425285 0.000000e+00 643.0
3 TraesCS6B01G121800 chr6B 84.615 390 52 3 1100 1482 116600699 116601087 5.030000e-102 381.0
4 TraesCS6B01G121800 chr6A 89.170 1542 115 16 12 1544 60731505 60733003 0.000000e+00 1875.0
5 TraesCS6B01G121800 chr6A 76.707 249 53 4 575 819 144095921 144096168 1.550000e-27 134.0
6 TraesCS6B01G121800 chr6D 89.362 799 37 14 1148 1912 54564625 54563841 0.000000e+00 961.0
7 TraesCS6B01G121800 chr6D 92.361 432 25 2 1071 1496 54560978 54560549 2.120000e-170 608.0
8 TraesCS6B01G121800 chr6D 84.673 535 60 9 967 1482 54378226 54377695 4.750000e-142 514.0
9 TraesCS6B01G121800 chr6D 77.016 248 54 3 575 820 13074817 13075063 3.340000e-29 139.0
10 TraesCS6B01G121800 chr6D 75.665 263 61 3 560 821 457596755 457596495 7.230000e-26 128.0
11 TraesCS6B01G121800 chr3D 94.017 585 31 2 1912 2492 604349660 604349076 0.000000e+00 883.0
12 TraesCS6B01G121800 chr3D 93.515 586 31 2 1912 2490 611687178 611686593 0.000000e+00 865.0
13 TraesCS6B01G121800 chr3D 93.151 584 35 4 1912 2492 594895659 594896240 0.000000e+00 852.0
14 TraesCS6B01G121800 chr3D 92.821 585 38 3 1912 2492 573512937 573513521 0.000000e+00 845.0
15 TraesCS6B01G121800 chr3D 76.892 251 48 10 575 820 612865960 612866205 1.550000e-27 134.0
16 TraesCS6B01G121800 chr7D 92.833 600 36 4 1898 2492 163393501 163394098 0.000000e+00 863.0
17 TraesCS6B01G121800 chr7D 93.345 586 34 4 1912 2492 613483573 613482988 0.000000e+00 861.0
18 TraesCS6B01G121800 chr7D 93.174 586 35 4 1912 2492 99863227 99862642 0.000000e+00 856.0
19 TraesCS6B01G121800 chr7D 83.838 99 15 1 1653 1750 604992345 604992443 2.640000e-15 93.5
20 TraesCS6B01G121800 chr4D 93.356 587 31 6 1912 2492 486511028 486511612 0.000000e+00 861.0
21 TraesCS6B01G121800 chr4D 75.785 223 36 7 1656 1861 117738511 117738290 2.040000e-16 97.1
22 TraesCS6B01G121800 chr5D 92.881 590 36 4 1908 2492 432648985 432648397 0.000000e+00 852.0
23 TraesCS6B01G121800 chr3B 76.806 263 59 2 560 821 818342535 818342796 2.000000e-31 147.0
24 TraesCS6B01G121800 chr3B 75.849 265 53 9 562 821 189120767 189120509 9.360000e-25 124.0
25 TraesCS6B01G121800 chr3B 75.281 267 60 5 559 821 638328856 638329120 3.370000e-24 122.0
26 TraesCS6B01G121800 chr2A 77.215 237 47 7 595 827 158244472 158244239 5.590000e-27 132.0
27 TraesCS6B01G121800 chr2D 80.769 156 30 0 1758 1913 80726142 80725987 3.370000e-24 122.0
28 TraesCS6B01G121800 chr2B 88.406 69 8 0 1795 1863 110541826 110541894 1.590000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G121800 chr6B 116365684 116368175 2491 False 4602.0 4602 100.0000 1 2492 1 chr6B.!!$F1 2491
1 TraesCS6B01G121800 chr6A 60731505 60733003 1498 False 1875.0 1875 89.1700 12 1544 1 chr6A.!!$F1 1532
2 TraesCS6B01G121800 chr6D 54560549 54564625 4076 True 784.5 961 90.8615 1071 1912 2 chr6D.!!$R3 841
3 TraesCS6B01G121800 chr6D 54377695 54378226 531 True 514.0 514 84.6730 967 1482 1 chr6D.!!$R1 515
4 TraesCS6B01G121800 chr3D 604349076 604349660 584 True 883.0 883 94.0170 1912 2492 1 chr3D.!!$R1 580
5 TraesCS6B01G121800 chr3D 611686593 611687178 585 True 865.0 865 93.5150 1912 2490 1 chr3D.!!$R2 578
6 TraesCS6B01G121800 chr3D 594895659 594896240 581 False 852.0 852 93.1510 1912 2492 1 chr3D.!!$F2 580
7 TraesCS6B01G121800 chr3D 573512937 573513521 584 False 845.0 845 92.8210 1912 2492 1 chr3D.!!$F1 580
8 TraesCS6B01G121800 chr7D 163393501 163394098 597 False 863.0 863 92.8330 1898 2492 1 chr7D.!!$F1 594
9 TraesCS6B01G121800 chr7D 613482988 613483573 585 True 861.0 861 93.3450 1912 2492 1 chr7D.!!$R2 580
10 TraesCS6B01G121800 chr7D 99862642 99863227 585 True 856.0 856 93.1740 1912 2492 1 chr7D.!!$R1 580
11 TraesCS6B01G121800 chr4D 486511028 486511612 584 False 861.0 861 93.3560 1912 2492 1 chr4D.!!$F1 580
12 TraesCS6B01G121800 chr5D 432648397 432648985 588 True 852.0 852 92.8810 1908 2492 1 chr5D.!!$R1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 725 0.108615 CGACGGCCAGACTTCATCTT 60.109 55.0 2.24 0.0 34.41 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 4333 0.109597 GCGGCCTGACAGTTCAAATG 60.11 55.0 0.0 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.746277 GTGGAAAGCGGTGGCGAT 60.746 61.111 0.00 0.00 46.35 4.58
103 104 7.925043 TCAAGTACTAGTCTTGAGTTCTAGG 57.075 40.000 22.88 5.77 43.88 3.02
149 150 8.974238 CCATAATTGGTTATATCTGGCAATGAT 58.026 33.333 0.00 0.00 38.30 2.45
162 163 5.419471 TCTGGCAATGATGATGATTTTGTGA 59.581 36.000 0.00 0.00 0.00 3.58
196 197 0.659957 GGCATTGCTCGGACTTGATC 59.340 55.000 8.82 0.00 0.00 2.92
199 200 2.223203 GCATTGCTCGGACTTGATCTTG 60.223 50.000 0.16 0.00 0.00 3.02
226 227 4.221482 GTGAAAATCCAAGATCTGGCCTTT 59.779 41.667 3.32 3.56 45.98 3.11
234 235 2.731572 AGATCTGGCCTTTGATGGTTG 58.268 47.619 3.32 0.00 0.00 3.77
241 242 2.178580 GCCTTTGATGGTTGGATCCAA 58.821 47.619 23.63 23.63 41.09 3.53
245 246 4.142093 CCTTTGATGGTTGGATCCAATGAC 60.142 45.833 29.37 21.52 41.09 3.06
252 253 3.640000 GATCCAATGACGGCGGCG 61.640 66.667 31.06 31.06 0.00 6.46
254 255 3.460672 ATCCAATGACGGCGGCGAT 62.461 57.895 38.93 21.91 0.00 4.58
273 274 1.770294 TTGAGCGGTGTTCCCTTTTT 58.230 45.000 0.00 0.00 0.00 1.94
335 336 1.717032 TGTCTAGAGGTGCTTGGTGT 58.283 50.000 0.00 0.00 0.00 4.16
361 362 6.294508 GGGTATGATTGTTGTTGTAGCTTGTT 60.295 38.462 0.00 0.00 0.00 2.83
364 365 6.201226 TGATTGTTGTTGTAGCTTGTTGAA 57.799 33.333 0.00 0.00 0.00 2.69
430 431 5.041940 GTGTTCCACCTAGTTATAGCTTCG 58.958 45.833 0.00 0.00 0.00 3.79
445 446 3.400255 AGCTTCGGTTTTGTAGGAGTTC 58.600 45.455 0.00 0.00 0.00 3.01
478 495 1.165907 GCTAGTGTTGGCTGTGTGCA 61.166 55.000 0.00 0.00 45.15 4.57
481 498 1.174712 AGTGTTGGCTGTGTGCATCC 61.175 55.000 0.00 0.00 45.15 3.51
484 501 0.804989 GTTGGCTGTGTGCATCCTAC 59.195 55.000 0.00 0.00 45.15 3.18
487 504 1.303309 GGCTGTGTGCATCCTACATC 58.697 55.000 0.00 0.00 45.15 3.06
489 506 1.134280 GCTGTGTGCATCCTACATCCT 60.134 52.381 0.00 0.00 42.31 3.24
490 507 2.103094 GCTGTGTGCATCCTACATCCTA 59.897 50.000 0.00 0.00 42.31 2.94
509 526 6.526056 TCCTAGTTACCTAGCTATGGAGAA 57.474 41.667 14.03 6.70 39.56 2.87
516 533 3.707102 ACCTAGCTATGGAGAAGTTGGAC 59.293 47.826 14.03 0.00 0.00 4.02
531 548 4.385825 AGTTGGACGTGTGTTCATTATGT 58.614 39.130 0.00 0.00 32.29 2.29
534 551 6.092122 AGTTGGACGTGTGTTCATTATGTATG 59.908 38.462 0.00 0.00 32.29 2.39
535 552 5.483811 TGGACGTGTGTTCATTATGTATGT 58.516 37.500 0.00 0.00 35.64 2.29
537 554 7.269316 TGGACGTGTGTTCATTATGTATGTAT 58.731 34.615 0.00 0.00 35.64 2.29
538 555 7.436970 TGGACGTGTGTTCATTATGTATGTATC 59.563 37.037 0.00 0.00 35.64 2.24
593 610 6.898041 TCTTTTTCATCGACGATGATTGTTT 58.102 32.000 34.20 0.00 46.52 2.83
623 640 2.026262 TGCTAGTTCTTTGGGGCCTTAG 60.026 50.000 0.84 0.00 0.00 2.18
643 660 4.836125 AGCACAATGATTTTTCGACTGT 57.164 36.364 0.00 0.00 0.00 3.55
645 662 4.516698 AGCACAATGATTTTTCGACTGTCT 59.483 37.500 6.21 0.00 0.00 3.41
704 721 1.532604 ATGACGACGGCCAGACTTCA 61.533 55.000 2.24 6.16 0.00 3.02
708 725 0.108615 CGACGGCCAGACTTCATCTT 60.109 55.000 2.24 0.00 34.41 2.40
709 726 1.134367 CGACGGCCAGACTTCATCTTA 59.866 52.381 2.24 0.00 34.41 2.10
712 729 2.567615 ACGGCCAGACTTCATCTTACTT 59.432 45.455 2.24 0.00 34.41 2.24
714 731 3.368427 CGGCCAGACTTCATCTTACTTCA 60.368 47.826 2.24 0.00 34.41 3.02
715 732 4.187694 GGCCAGACTTCATCTTACTTCAG 58.812 47.826 0.00 0.00 34.41 3.02
722 739 5.615289 ACTTCATCTTACTTCAGTGCTTGT 58.385 37.500 0.00 0.00 0.00 3.16
730 747 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
737 754 1.667724 GCTTGTAGTCGTCGCTAGGTA 59.332 52.381 0.00 0.00 0.00 3.08
738 755 2.290093 GCTTGTAGTCGTCGCTAGGTAT 59.710 50.000 0.00 0.00 0.00 2.73
790 807 8.445275 TGCTTCTTTTGTTCTTTGTACTATCA 57.555 30.769 0.00 0.00 0.00 2.15
818 835 9.512588 AGTGTCTGATGAATAGATCAAAAGTTT 57.487 29.630 0.00 0.00 42.54 2.66
880 897 4.496507 GCGCTGATTTCCCTTGATTCTAAC 60.497 45.833 0.00 0.00 0.00 2.34
886 903 8.055279 TGATTTCCCTTGATTCTAACACATTC 57.945 34.615 0.00 0.00 0.00 2.67
892 909 6.409704 CCTTGATTCTAACACATTCTCCTCA 58.590 40.000 0.00 0.00 0.00 3.86
908 925 1.675552 CTCACGGAAACCAAACACCT 58.324 50.000 0.00 0.00 0.00 4.00
912 929 2.946990 CACGGAAACCAAACACCTAACT 59.053 45.455 0.00 0.00 0.00 2.24
944 961 4.616181 AAGAAACACGTGACCAAGAAAG 57.384 40.909 25.01 0.00 0.00 2.62
946 963 3.871594 AGAAACACGTGACCAAGAAAGAG 59.128 43.478 25.01 0.00 0.00 2.85
950 967 2.797156 CACGTGACCAAGAAAGAGTCTG 59.203 50.000 10.90 0.00 36.40 3.51
951 968 2.431057 ACGTGACCAAGAAAGAGTCTGT 59.569 45.455 0.00 0.00 36.40 3.41
952 969 3.635373 ACGTGACCAAGAAAGAGTCTGTA 59.365 43.478 0.00 0.00 36.40 2.74
954 971 4.444720 CGTGACCAAGAAAGAGTCTGTAAC 59.555 45.833 0.00 0.00 36.40 2.50
955 972 4.750598 GTGACCAAGAAAGAGTCTGTAACC 59.249 45.833 0.00 0.00 36.40 2.85
956 973 4.202326 TGACCAAGAAAGAGTCTGTAACCC 60.202 45.833 0.00 0.00 36.40 4.11
960 977 5.012768 CCAAGAAAGAGTCTGTAACCCCTAA 59.987 44.000 0.00 0.00 36.40 2.69
961 978 6.465321 CCAAGAAAGAGTCTGTAACCCCTAAA 60.465 42.308 0.00 0.00 36.40 1.85
1001 1018 0.543749 GGCAACAGTCCAGCCTAGAT 59.456 55.000 0.00 0.00 44.92 1.98
1003 1020 1.208052 GCAACAGTCCAGCCTAGATGA 59.792 52.381 0.00 0.00 0.00 2.92
1089 3667 2.413765 GCAGGGTCGACCGATCTC 59.586 66.667 27.68 13.81 46.96 2.75
1090 3668 2.716244 CAGGGTCGACCGATCTCG 59.284 66.667 27.68 10.51 46.96 4.04
1097 3675 1.063616 GTCGACCGATCTCGATCACAA 59.936 52.381 3.51 0.00 44.21 3.33
1243 3833 0.108424 CTTCCAGAGCTCCTTGGACG 60.108 60.000 21.16 16.57 0.00 4.79
1291 3881 0.546122 GCTGGGTATCATGGTGGACA 59.454 55.000 0.00 0.00 0.00 4.02
1303 3893 2.060980 GTGGACATCGGAGGGCTCT 61.061 63.158 0.00 0.00 0.00 4.09
1306 3896 1.330655 GGACATCGGAGGGCTCTTGA 61.331 60.000 0.00 0.00 0.00 3.02
1336 3926 2.035442 GGCTGCTGGTTCGTCTTCC 61.035 63.158 0.00 0.00 0.00 3.46
1413 4003 5.343593 GCTGGTAGATAACTTGATCGAATCG 59.656 44.000 0.00 0.00 0.00 3.34
1505 4095 9.577110 AGTTGATGCATAGTGTTGAAATATTTG 57.423 29.630 5.17 0.00 0.00 2.32
1506 4096 9.357652 GTTGATGCATAGTGTTGAAATATTTGT 57.642 29.630 5.17 0.00 0.00 2.83
1510 4100 9.882996 ATGCATAGTGTTGAAATATTTGTATCG 57.117 29.630 5.17 0.00 0.00 2.92
1540 4130 7.493320 CGTGTTGTAATTGGTTATAGGCTCTTA 59.507 37.037 0.00 0.00 0.00 2.10
1566 4156 6.839033 ACTTTTCTTTTGTATAGCTAACGCC 58.161 36.000 0.00 0.00 36.60 5.68
1567 4157 6.653740 ACTTTTCTTTTGTATAGCTAACGCCT 59.346 34.615 0.00 0.00 36.60 5.52
1568 4158 6.417191 TTTCTTTTGTATAGCTAACGCCTG 57.583 37.500 0.00 0.00 36.60 4.85
1569 4159 5.333299 TCTTTTGTATAGCTAACGCCTGA 57.667 39.130 0.00 0.00 36.60 3.86
1570 4160 5.107133 TCTTTTGTATAGCTAACGCCTGAC 58.893 41.667 0.00 0.00 36.60 3.51
1571 4161 4.730949 TTTGTATAGCTAACGCCTGACT 57.269 40.909 0.00 0.00 36.60 3.41
1572 4162 3.984508 TGTATAGCTAACGCCTGACTC 57.015 47.619 0.00 0.00 36.60 3.36
1573 4163 3.552875 TGTATAGCTAACGCCTGACTCT 58.447 45.455 0.00 0.00 36.60 3.24
1574 4164 3.564644 TGTATAGCTAACGCCTGACTCTC 59.435 47.826 0.00 0.00 36.60 3.20
1575 4165 2.124277 TAGCTAACGCCTGACTCTCA 57.876 50.000 0.00 0.00 36.60 3.27
1576 4166 1.257743 AGCTAACGCCTGACTCTCAA 58.742 50.000 0.00 0.00 36.60 3.02
1577 4167 1.827969 AGCTAACGCCTGACTCTCAAT 59.172 47.619 0.00 0.00 36.60 2.57
1578 4168 2.159170 AGCTAACGCCTGACTCTCAATC 60.159 50.000 0.00 0.00 36.60 2.67
1579 4169 2.159170 GCTAACGCCTGACTCTCAATCT 60.159 50.000 0.00 0.00 0.00 2.40
1580 4170 2.663826 AACGCCTGACTCTCAATCTC 57.336 50.000 0.00 0.00 0.00 2.75
1581 4171 1.846007 ACGCCTGACTCTCAATCTCT 58.154 50.000 0.00 0.00 0.00 3.10
1582 4172 2.175202 ACGCCTGACTCTCAATCTCTT 58.825 47.619 0.00 0.00 0.00 2.85
1583 4173 2.165437 ACGCCTGACTCTCAATCTCTTC 59.835 50.000 0.00 0.00 0.00 2.87
1584 4174 2.481104 CGCCTGACTCTCAATCTCTTCC 60.481 54.545 0.00 0.00 0.00 3.46
1585 4175 2.765699 GCCTGACTCTCAATCTCTTCCT 59.234 50.000 0.00 0.00 0.00 3.36
1586 4176 3.181476 GCCTGACTCTCAATCTCTTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
1587 4177 4.280819 CCTGACTCTCAATCTCTTCCTCT 58.719 47.826 0.00 0.00 0.00 3.69
1588 4178 4.711355 CCTGACTCTCAATCTCTTCCTCTT 59.289 45.833 0.00 0.00 0.00 2.85
1589 4179 5.394443 CCTGACTCTCAATCTCTTCCTCTTG 60.394 48.000 0.00 0.00 0.00 3.02
1590 4180 5.083122 TGACTCTCAATCTCTTCCTCTTGT 58.917 41.667 0.00 0.00 0.00 3.16
1591 4181 6.249192 TGACTCTCAATCTCTTCCTCTTGTA 58.751 40.000 0.00 0.00 0.00 2.41
1592 4182 6.721668 TGACTCTCAATCTCTTCCTCTTGTAA 59.278 38.462 0.00 0.00 0.00 2.41
1593 4183 7.398618 TGACTCTCAATCTCTTCCTCTTGTAAT 59.601 37.037 0.00 0.00 0.00 1.89
1594 4184 8.830915 ACTCTCAATCTCTTCCTCTTGTAATA 57.169 34.615 0.00 0.00 0.00 0.98
1595 4185 9.261035 ACTCTCAATCTCTTCCTCTTGTAATAA 57.739 33.333 0.00 0.00 0.00 1.40
1601 4191 8.994429 ATCTCTTCCTCTTGTAATAATATGCG 57.006 34.615 0.00 0.00 0.00 4.73
1602 4192 6.868864 TCTCTTCCTCTTGTAATAATATGCGC 59.131 38.462 0.00 0.00 0.00 6.09
1603 4193 6.759272 TCTTCCTCTTGTAATAATATGCGCT 58.241 36.000 9.73 0.00 0.00 5.92
1604 4194 7.892609 TCTTCCTCTTGTAATAATATGCGCTA 58.107 34.615 9.73 0.00 0.00 4.26
1605 4195 8.531982 TCTTCCTCTTGTAATAATATGCGCTAT 58.468 33.333 9.73 3.00 0.00 2.97
1606 4196 9.803315 CTTCCTCTTGTAATAATATGCGCTATA 57.197 33.333 9.73 5.45 0.00 1.31
1634 4224 7.399245 TTTTTCTTCTTTTCGAAAAGGAGGA 57.601 32.000 39.68 34.87 46.86 3.71
1635 4225 7.582667 TTTTCTTCTTTTCGAAAAGGAGGAT 57.417 32.000 39.68 0.00 46.86 3.24
1636 4226 6.560253 TTCTTCTTTTCGAAAAGGAGGATG 57.440 37.500 39.68 25.53 46.86 3.51
1637 4227 5.865085 TCTTCTTTTCGAAAAGGAGGATGA 58.135 37.500 39.68 26.92 46.86 2.92
1638 4228 5.701290 TCTTCTTTTCGAAAAGGAGGATGAC 59.299 40.000 39.68 0.00 46.86 3.06
1639 4229 4.324267 TCTTTTCGAAAAGGAGGATGACC 58.676 43.478 37.27 0.00 44.22 4.02
1640 4230 2.781681 TTCGAAAAGGAGGATGACCC 57.218 50.000 0.00 0.00 36.73 4.46
1641 4231 0.909623 TCGAAAAGGAGGATGACCCC 59.090 55.000 0.00 0.00 36.73 4.95
1642 4232 0.912486 CGAAAAGGAGGATGACCCCT 59.088 55.000 0.00 0.00 38.08 4.79
1651 4241 3.181526 GATGACCCCTCAGCCTTTG 57.818 57.895 0.00 0.00 0.00 2.77
1652 4242 1.000396 ATGACCCCTCAGCCTTTGC 60.000 57.895 0.00 0.00 37.95 3.68
1653 4243 1.792757 ATGACCCCTCAGCCTTTGCA 61.793 55.000 0.00 0.00 41.13 4.08
1654 4244 1.000396 GACCCCTCAGCCTTTGCAT 60.000 57.895 0.00 0.00 41.13 3.96
1655 4245 0.613012 GACCCCTCAGCCTTTGCATT 60.613 55.000 0.00 0.00 41.13 3.56
1656 4246 0.178924 ACCCCTCAGCCTTTGCATTT 60.179 50.000 0.00 0.00 41.13 2.32
1657 4247 0.978907 CCCCTCAGCCTTTGCATTTT 59.021 50.000 0.00 0.00 41.13 1.82
1658 4248 2.178580 CCCCTCAGCCTTTGCATTTTA 58.821 47.619 0.00 0.00 41.13 1.52
1659 4249 2.767960 CCCCTCAGCCTTTGCATTTTAT 59.232 45.455 0.00 0.00 41.13 1.40
1660 4250 3.198417 CCCCTCAGCCTTTGCATTTTATT 59.802 43.478 0.00 0.00 41.13 1.40
1661 4251 4.186159 CCCTCAGCCTTTGCATTTTATTG 58.814 43.478 0.00 0.00 41.13 1.90
1662 4252 3.619929 CCTCAGCCTTTGCATTTTATTGC 59.380 43.478 0.00 0.00 43.07 3.56
1663 4253 4.501071 CTCAGCCTTTGCATTTTATTGCT 58.499 39.130 0.00 0.00 43.18 3.91
1664 4254 4.897140 TCAGCCTTTGCATTTTATTGCTT 58.103 34.783 0.00 0.00 43.18 3.91
1665 4255 6.035368 TCAGCCTTTGCATTTTATTGCTTA 57.965 33.333 0.00 0.00 43.18 3.09
1666 4256 6.642430 TCAGCCTTTGCATTTTATTGCTTAT 58.358 32.000 0.00 0.00 43.18 1.73
1667 4257 7.104939 TCAGCCTTTGCATTTTATTGCTTATT 58.895 30.769 0.00 0.00 43.18 1.40
1668 4258 7.278424 TCAGCCTTTGCATTTTATTGCTTATTC 59.722 33.333 0.00 0.00 43.18 1.75
1669 4259 7.064847 CAGCCTTTGCATTTTATTGCTTATTCA 59.935 33.333 0.00 0.00 43.18 2.57
1670 4260 7.607223 AGCCTTTGCATTTTATTGCTTATTCAA 59.393 29.630 0.00 0.00 43.18 2.69
1671 4261 8.400186 GCCTTTGCATTTTATTGCTTATTCAAT 58.600 29.630 0.00 0.00 43.18 2.57
1686 4276 9.515226 TGCTTATTCAATAAGACCTTACAAAGT 57.485 29.630 19.66 0.00 43.85 2.66
1713 4303 6.605471 ACACTAATATGTCTGAAGTGACCA 57.395 37.500 10.87 0.00 39.93 4.02
1714 4304 7.187824 ACACTAATATGTCTGAAGTGACCAT 57.812 36.000 10.87 0.00 39.93 3.55
1715 4305 7.624549 ACACTAATATGTCTGAAGTGACCATT 58.375 34.615 10.87 0.00 39.93 3.16
1716 4306 8.103305 ACACTAATATGTCTGAAGTGACCATTT 58.897 33.333 10.87 0.00 39.93 2.32
1717 4307 8.950210 CACTAATATGTCTGAAGTGACCATTTT 58.050 33.333 0.00 0.00 39.93 1.82
1718 4308 8.950210 ACTAATATGTCTGAAGTGACCATTTTG 58.050 33.333 0.00 0.00 36.21 2.44
1719 4309 9.166173 CTAATATGTCTGAAGTGACCATTTTGA 57.834 33.333 0.00 0.00 36.21 2.69
1720 4310 5.695851 ATGTCTGAAGTGACCATTTTGAC 57.304 39.130 0.00 0.00 36.21 3.18
1721 4311 3.559655 TGTCTGAAGTGACCATTTTGACG 59.440 43.478 0.00 0.00 36.21 4.35
1722 4312 3.807622 GTCTGAAGTGACCATTTTGACGA 59.192 43.478 0.00 0.00 0.00 4.20
1723 4313 3.807622 TCTGAAGTGACCATTTTGACGAC 59.192 43.478 0.00 0.00 0.00 4.34
1724 4314 3.536570 TGAAGTGACCATTTTGACGACA 58.463 40.909 0.00 0.00 0.00 4.35
1725 4315 4.133820 TGAAGTGACCATTTTGACGACAT 58.866 39.130 0.00 0.00 0.00 3.06
1726 4316 4.213270 TGAAGTGACCATTTTGACGACATC 59.787 41.667 0.00 0.00 0.00 3.06
1727 4317 4.008074 AGTGACCATTTTGACGACATCT 57.992 40.909 0.00 0.00 0.00 2.90
1728 4318 5.147330 AGTGACCATTTTGACGACATCTA 57.853 39.130 0.00 0.00 0.00 1.98
1729 4319 5.734720 AGTGACCATTTTGACGACATCTAT 58.265 37.500 0.00 0.00 0.00 1.98
1730 4320 5.812642 AGTGACCATTTTGACGACATCTATC 59.187 40.000 0.00 0.00 0.00 2.08
1732 4322 3.555956 ACCATTTTGACGACATCTATCGC 59.444 43.478 0.00 0.00 46.22 4.58
1733 4323 3.804325 CCATTTTGACGACATCTATCGCT 59.196 43.478 0.00 0.00 46.22 4.93
1734 4324 4.982295 CCATTTTGACGACATCTATCGCTA 59.018 41.667 0.00 0.00 46.22 4.26
1735 4325 5.107837 CCATTTTGACGACATCTATCGCTAC 60.108 44.000 0.00 0.00 46.22 3.58
1736 4326 4.895224 TTTGACGACATCTATCGCTACT 57.105 40.909 0.00 0.00 46.22 2.57
1737 4327 4.469625 TTGACGACATCTATCGCTACTC 57.530 45.455 0.00 0.00 46.22 2.59
1738 4328 2.806818 TGACGACATCTATCGCTACTCC 59.193 50.000 0.00 0.00 46.22 3.85
1739 4329 3.068560 GACGACATCTATCGCTACTCCT 58.931 50.000 0.00 0.00 46.22 3.69
1740 4330 4.244066 GACGACATCTATCGCTACTCCTA 58.756 47.826 0.00 0.00 46.22 2.94
1741 4331 4.834534 ACGACATCTATCGCTACTCCTAT 58.165 43.478 0.00 0.00 46.22 2.57
1742 4332 4.871557 ACGACATCTATCGCTACTCCTATC 59.128 45.833 0.00 0.00 46.22 2.08
1743 4333 4.271533 CGACATCTATCGCTACTCCTATCC 59.728 50.000 0.00 0.00 34.90 2.59
1744 4334 5.180810 ACATCTATCGCTACTCCTATCCA 57.819 43.478 0.00 0.00 0.00 3.41
1745 4335 5.761205 ACATCTATCGCTACTCCTATCCAT 58.239 41.667 0.00 0.00 0.00 3.41
1746 4336 6.191315 ACATCTATCGCTACTCCTATCCATT 58.809 40.000 0.00 0.00 0.00 3.16
1747 4337 6.665680 ACATCTATCGCTACTCCTATCCATTT 59.334 38.462 0.00 0.00 0.00 2.32
1748 4338 6.516739 TCTATCGCTACTCCTATCCATTTG 57.483 41.667 0.00 0.00 0.00 2.32
1749 4339 6.246163 TCTATCGCTACTCCTATCCATTTGA 58.754 40.000 0.00 0.00 0.00 2.69
1750 4340 5.808366 ATCGCTACTCCTATCCATTTGAA 57.192 39.130 0.00 0.00 0.00 2.69
1751 4341 4.945246 TCGCTACTCCTATCCATTTGAAC 58.055 43.478 0.00 0.00 0.00 3.18
1752 4342 4.649674 TCGCTACTCCTATCCATTTGAACT 59.350 41.667 0.00 0.00 0.00 3.01
1753 4343 4.747108 CGCTACTCCTATCCATTTGAACTG 59.253 45.833 0.00 0.00 0.00 3.16
1754 4344 5.675538 GCTACTCCTATCCATTTGAACTGT 58.324 41.667 0.00 0.00 0.00 3.55
1755 4345 5.755861 GCTACTCCTATCCATTTGAACTGTC 59.244 44.000 0.00 0.00 0.00 3.51
1756 4346 5.762179 ACTCCTATCCATTTGAACTGTCA 57.238 39.130 0.00 0.00 0.00 3.58
1757 4347 5.738909 ACTCCTATCCATTTGAACTGTCAG 58.261 41.667 0.00 0.00 34.49 3.51
1758 4348 5.102953 TCCTATCCATTTGAACTGTCAGG 57.897 43.478 4.53 0.00 34.49 3.86
1759 4349 3.629398 CCTATCCATTTGAACTGTCAGGC 59.371 47.826 4.53 0.00 34.49 4.85
1760 4350 1.909700 TCCATTTGAACTGTCAGGCC 58.090 50.000 4.53 0.00 34.49 5.19
1761 4351 0.523072 CCATTTGAACTGTCAGGCCG 59.477 55.000 4.53 0.00 34.49 6.13
1762 4352 0.109597 CATTTGAACTGTCAGGCCGC 60.110 55.000 4.53 0.00 34.49 6.53
1763 4353 0.537143 ATTTGAACTGTCAGGCCGCA 60.537 50.000 4.53 0.00 34.49 5.69
1764 4354 0.537143 TTTGAACTGTCAGGCCGCAT 60.537 50.000 4.53 0.00 34.49 4.73
1765 4355 0.323302 TTGAACTGTCAGGCCGCATA 59.677 50.000 4.53 0.00 34.49 3.14
1766 4356 0.391130 TGAACTGTCAGGCCGCATAC 60.391 55.000 4.53 0.00 0.00 2.39
1767 4357 1.078426 AACTGTCAGGCCGCATACC 60.078 57.895 4.53 0.00 0.00 2.73
1768 4358 2.203070 CTGTCAGGCCGCATACCC 60.203 66.667 0.00 0.00 0.00 3.69
1769 4359 4.155733 TGTCAGGCCGCATACCCG 62.156 66.667 0.00 0.00 0.00 5.28
1777 4367 4.027755 CGCATACCCGGACATCAC 57.972 61.111 0.73 0.00 0.00 3.06
1778 4368 1.142965 CGCATACCCGGACATCACA 59.857 57.895 0.73 0.00 0.00 3.58
1779 4369 0.249868 CGCATACCCGGACATCACAT 60.250 55.000 0.73 0.00 0.00 3.21
1780 4370 1.512926 GCATACCCGGACATCACATC 58.487 55.000 0.73 0.00 0.00 3.06
1781 4371 1.202639 GCATACCCGGACATCACATCA 60.203 52.381 0.73 0.00 0.00 3.07
1782 4372 2.744823 GCATACCCGGACATCACATCAA 60.745 50.000 0.73 0.00 0.00 2.57
1783 4373 3.540617 CATACCCGGACATCACATCAAA 58.459 45.455 0.73 0.00 0.00 2.69
1784 4374 2.113860 ACCCGGACATCACATCAAAG 57.886 50.000 0.73 0.00 0.00 2.77
1785 4375 0.734889 CCCGGACATCACATCAAAGC 59.265 55.000 0.73 0.00 0.00 3.51
1786 4376 1.452110 CCGGACATCACATCAAAGCA 58.548 50.000 0.00 0.00 0.00 3.91
1787 4377 1.131126 CCGGACATCACATCAAAGCAC 59.869 52.381 0.00 0.00 0.00 4.40
1788 4378 1.805943 CGGACATCACATCAAAGCACA 59.194 47.619 0.00 0.00 0.00 4.57
1789 4379 2.226200 CGGACATCACATCAAAGCACAA 59.774 45.455 0.00 0.00 0.00 3.33
1790 4380 3.568538 GGACATCACATCAAAGCACAAC 58.431 45.455 0.00 0.00 0.00 3.32
1791 4381 3.004629 GGACATCACATCAAAGCACAACA 59.995 43.478 0.00 0.00 0.00 3.33
1792 4382 4.321452 GGACATCACATCAAAGCACAACAT 60.321 41.667 0.00 0.00 0.00 2.71
1793 4383 4.801891 ACATCACATCAAAGCACAACATC 58.198 39.130 0.00 0.00 0.00 3.06
1794 4384 4.278919 ACATCACATCAAAGCACAACATCA 59.721 37.500 0.00 0.00 0.00 3.07
1795 4385 4.915158 TCACATCAAAGCACAACATCAA 57.085 36.364 0.00 0.00 0.00 2.57
1796 4386 5.259832 TCACATCAAAGCACAACATCAAA 57.740 34.783 0.00 0.00 0.00 2.69
1797 4387 5.658468 TCACATCAAAGCACAACATCAAAA 58.342 33.333 0.00 0.00 0.00 2.44
1798 4388 5.749588 TCACATCAAAGCACAACATCAAAAG 59.250 36.000 0.00 0.00 0.00 2.27
1799 4389 4.508861 ACATCAAAGCACAACATCAAAAGC 59.491 37.500 0.00 0.00 0.00 3.51
1800 4390 3.456280 TCAAAGCACAACATCAAAAGCC 58.544 40.909 0.00 0.00 0.00 4.35
1801 4391 2.138596 AAGCACAACATCAAAAGCCG 57.861 45.000 0.00 0.00 0.00 5.52
1802 4392 1.317613 AGCACAACATCAAAAGCCGA 58.682 45.000 0.00 0.00 0.00 5.54
1803 4393 1.680735 AGCACAACATCAAAAGCCGAA 59.319 42.857 0.00 0.00 0.00 4.30
1804 4394 2.053627 GCACAACATCAAAAGCCGAAG 58.946 47.619 0.00 0.00 0.00 3.79
1816 4406 3.924507 CCGAAGGCCCCAATCAAG 58.075 61.111 0.00 0.00 46.14 3.02
1817 4407 1.000896 CCGAAGGCCCCAATCAAGT 60.001 57.895 0.00 0.00 46.14 3.16
1818 4408 1.032114 CCGAAGGCCCCAATCAAGTC 61.032 60.000 0.00 0.00 46.14 3.01
1819 4409 0.322456 CGAAGGCCCCAATCAAGTCA 60.322 55.000 0.00 0.00 0.00 3.41
1820 4410 1.886222 CGAAGGCCCCAATCAAGTCAA 60.886 52.381 0.00 0.00 0.00 3.18
1821 4411 2.247358 GAAGGCCCCAATCAAGTCAAA 58.753 47.619 0.00 0.00 0.00 2.69
1822 4412 2.629017 AGGCCCCAATCAAGTCAAAT 57.371 45.000 0.00 0.00 0.00 2.32
1823 4413 2.906568 AGGCCCCAATCAAGTCAAATT 58.093 42.857 0.00 0.00 0.00 1.82
1824 4414 2.568509 AGGCCCCAATCAAGTCAAATTG 59.431 45.455 0.00 0.00 33.57 2.32
1825 4415 2.349590 GCCCCAATCAAGTCAAATTGC 58.650 47.619 0.00 0.00 32.65 3.56
1826 4416 2.027837 GCCCCAATCAAGTCAAATTGCT 60.028 45.455 0.00 0.00 32.65 3.91
1827 4417 3.592059 CCCCAATCAAGTCAAATTGCTG 58.408 45.455 0.00 0.00 32.65 4.41
1828 4418 3.592059 CCCAATCAAGTCAAATTGCTGG 58.408 45.455 0.00 4.93 34.84 4.85
1829 4419 3.592059 CCAATCAAGTCAAATTGCTGGG 58.408 45.455 0.00 0.00 33.01 4.45
1830 4420 3.007182 CCAATCAAGTCAAATTGCTGGGT 59.993 43.478 0.00 0.00 33.01 4.51
1831 4421 4.240096 CAATCAAGTCAAATTGCTGGGTC 58.760 43.478 0.00 0.00 0.00 4.46
1832 4422 3.228188 TCAAGTCAAATTGCTGGGTCT 57.772 42.857 0.00 0.00 0.00 3.85
1833 4423 2.886523 TCAAGTCAAATTGCTGGGTCTG 59.113 45.455 0.00 0.00 0.00 3.51
1834 4424 1.915141 AGTCAAATTGCTGGGTCTGG 58.085 50.000 0.00 0.00 0.00 3.86
1835 4425 0.890683 GTCAAATTGCTGGGTCTGGG 59.109 55.000 0.00 0.00 0.00 4.45
1836 4426 0.482446 TCAAATTGCTGGGTCTGGGT 59.518 50.000 0.00 0.00 0.00 4.51
1837 4427 0.890683 CAAATTGCTGGGTCTGGGTC 59.109 55.000 0.00 0.00 0.00 4.46
1838 4428 0.482446 AAATTGCTGGGTCTGGGTCA 59.518 50.000 0.00 0.00 0.00 4.02
1839 4429 0.251341 AATTGCTGGGTCTGGGTCAC 60.251 55.000 0.00 0.00 0.00 3.67
1840 4430 1.426251 ATTGCTGGGTCTGGGTCACA 61.426 55.000 0.00 0.00 0.00 3.58
1841 4431 2.032681 GCTGGGTCTGGGTCACAC 59.967 66.667 0.00 0.00 0.00 3.82
1842 4432 2.818169 GCTGGGTCTGGGTCACACA 61.818 63.158 0.00 0.00 0.00 3.72
1843 4433 1.071471 CTGGGTCTGGGTCACACAC 59.929 63.158 0.00 0.00 0.00 3.82
1844 4434 1.383943 TGGGTCTGGGTCACACACT 60.384 57.895 0.00 0.00 0.00 3.55
1845 4435 1.071471 GGGTCTGGGTCACACACTG 59.929 63.158 0.00 0.00 0.00 3.66
1846 4436 1.071471 GGTCTGGGTCACACACTGG 59.929 63.158 0.00 0.00 0.00 4.00
1847 4437 1.696097 GGTCTGGGTCACACACTGGT 61.696 60.000 0.00 0.00 0.00 4.00
1848 4438 0.249911 GTCTGGGTCACACACTGGTC 60.250 60.000 0.00 0.00 0.00 4.02
1849 4439 1.071471 CTGGGTCACACACTGGTCC 59.929 63.158 0.00 0.00 0.00 4.46
1850 4440 1.690985 TGGGTCACACACTGGTCCA 60.691 57.895 0.00 0.00 0.00 4.02
1851 4441 1.071471 GGGTCACACACTGGTCCAG 59.929 63.158 17.88 17.88 37.52 3.86
1852 4442 1.598130 GGTCACACACTGGTCCAGC 60.598 63.158 19.40 0.20 34.37 4.85
1853 4443 1.956170 GTCACACACTGGTCCAGCG 60.956 63.158 19.40 12.33 34.37 5.18
1854 4444 3.349006 CACACACTGGTCCAGCGC 61.349 66.667 19.40 0.00 34.37 5.92
1855 4445 3.860605 ACACACTGGTCCAGCGCA 61.861 61.111 19.40 0.00 34.37 6.09
1856 4446 3.349006 CACACTGGTCCAGCGCAC 61.349 66.667 19.40 0.00 34.37 5.34
1857 4447 3.550431 ACACTGGTCCAGCGCACT 61.550 61.111 19.40 0.00 34.37 4.40
1858 4448 2.740055 CACTGGTCCAGCGCACTC 60.740 66.667 19.40 0.00 34.37 3.51
1859 4449 2.919856 ACTGGTCCAGCGCACTCT 60.920 61.111 19.40 0.00 34.37 3.24
1860 4450 2.125753 CTGGTCCAGCGCACTCTC 60.126 66.667 11.47 0.00 0.00 3.20
1861 4451 2.917227 TGGTCCAGCGCACTCTCA 60.917 61.111 11.47 0.00 0.00 3.27
1862 4452 2.433318 GGTCCAGCGCACTCTCAC 60.433 66.667 11.47 0.00 0.00 3.51
1863 4453 2.433318 GTCCAGCGCACTCTCACC 60.433 66.667 11.47 0.00 0.00 4.02
1864 4454 4.056125 TCCAGCGCACTCTCACCG 62.056 66.667 11.47 0.00 0.00 4.94
1889 4479 4.989588 CATGCGTATGCTGCAGTG 57.010 55.556 16.64 0.00 46.98 3.66
1890 4480 1.354155 CATGCGTATGCTGCAGTGG 59.646 57.895 16.64 0.17 46.98 4.00
1891 4481 2.475466 ATGCGTATGCTGCAGTGGC 61.475 57.895 16.64 11.21 46.98 5.01
1892 4482 3.880846 GCGTATGCTGCAGTGGCC 61.881 66.667 16.64 0.00 40.13 5.36
1893 4483 3.566853 CGTATGCTGCAGTGGCCG 61.567 66.667 16.64 9.40 40.13 6.13
1894 4484 2.436646 GTATGCTGCAGTGGCCGT 60.437 61.111 16.64 2.16 40.13 5.68
1895 4485 2.125147 TATGCTGCAGTGGCCGTC 60.125 61.111 16.64 0.00 40.13 4.79
1896 4486 2.953488 TATGCTGCAGTGGCCGTCA 61.953 57.895 16.64 2.74 40.13 4.35
1897 4487 2.256072 TATGCTGCAGTGGCCGTCAT 62.256 55.000 16.64 10.48 40.13 3.06
1898 4488 3.503363 GCTGCAGTGGCCGTCATC 61.503 66.667 16.64 0.00 40.13 2.92
1899 4489 2.046988 CTGCAGTGGCCGTCATCA 60.047 61.111 5.25 0.00 40.13 3.07
1900 4490 1.450848 CTGCAGTGGCCGTCATCAT 60.451 57.895 5.25 0.00 40.13 2.45
1901 4491 1.434622 CTGCAGTGGCCGTCATCATC 61.435 60.000 5.25 0.00 40.13 2.92
1902 4492 1.450134 GCAGTGGCCGTCATCATCA 60.450 57.895 0.00 0.00 0.00 3.07
1903 4493 0.816825 GCAGTGGCCGTCATCATCAT 60.817 55.000 0.00 0.00 0.00 2.45
1904 4494 1.224075 CAGTGGCCGTCATCATCATC 58.776 55.000 0.00 0.00 0.00 2.92
1905 4495 1.126488 AGTGGCCGTCATCATCATCT 58.874 50.000 0.00 0.00 0.00 2.90
1906 4496 1.487976 AGTGGCCGTCATCATCATCTT 59.512 47.619 0.00 0.00 0.00 2.40
1907 4497 1.869767 GTGGCCGTCATCATCATCTTC 59.130 52.381 0.00 0.00 0.00 2.87
1908 4498 1.202687 TGGCCGTCATCATCATCTTCC 60.203 52.381 0.00 0.00 0.00 3.46
1909 4499 1.202687 GGCCGTCATCATCATCTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
1910 4500 1.869767 GCCGTCATCATCATCTTCCAC 59.130 52.381 0.00 0.00 0.00 4.02
1933 4523 5.763698 ACCACTAGTAGAAAACAAGGCTTTC 59.236 40.000 3.59 0.00 33.75 2.62
2068 4663 1.066716 CGGTTCGTCTGGACCCATTTA 60.067 52.381 0.00 0.00 0.00 1.40
2072 4667 2.759355 TCGTCTGGACCCATTTATCCT 58.241 47.619 0.00 0.00 35.86 3.24
2112 4707 2.443394 CCAATGGGCCTCGCTCCTA 61.443 63.158 4.53 0.00 0.00 2.94
2114 4709 1.075226 AATGGGCCTCGCTCCTAGA 60.075 57.895 4.53 0.00 0.00 2.43
2142 4737 4.973055 TTGTCCCGGTTCGTGGCG 62.973 66.667 0.00 0.00 0.00 5.69
2170 4772 1.574263 GACAGAGGGGGCTTTAGTCT 58.426 55.000 0.00 0.00 0.00 3.24
2177 4779 0.903236 GGGGCTTTAGTCTCGGTTCT 59.097 55.000 0.00 0.00 0.00 3.01
2193 4795 0.974010 TTCTAGCCACGAACCGGGAT 60.974 55.000 6.32 0.00 28.17 3.85
2199 4801 2.015081 GCCACGAACCGGGATAAATGT 61.015 52.381 6.32 0.00 28.17 2.71
2327 4930 3.691118 ACATGAGGTGTTCGATGAAATGG 59.309 43.478 0.00 0.00 38.01 3.16
2354 4957 4.040461 AGCCACACTAGTTAAGCTTTCTCA 59.960 41.667 3.20 0.00 0.00 3.27
2374 4977 0.891373 TCTTGAAGCTCGACCTCCAG 59.109 55.000 0.00 0.00 0.00 3.86
2375 4978 0.739112 CTTGAAGCTCGACCTCCAGC 60.739 60.000 0.00 0.00 35.73 4.85
2418 5021 1.477553 TAGGTTTAGCGGTCCGTCAT 58.522 50.000 13.94 2.01 0.00 3.06
2435 5038 0.391661 CATGTCCTGTCCCCGTCTTG 60.392 60.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.886719 GCAGTTATATGCATATCACATGTGTAT 58.113 33.333 25.51 17.53 45.77 2.29
4 5 8.255394 GCAGTTATATGCATATCACATGTGTA 57.745 34.615 25.51 16.18 45.77 2.90
54 55 5.733620 AGTACCACCAAATCGAAGTCTTA 57.266 39.130 0.00 0.00 0.00 2.10
88 89 5.367060 AGTTTTCACCCTAGAACTCAAGACT 59.633 40.000 0.00 0.00 0.00 3.24
149 150 7.523293 ACAAGGTAACATCACAAAATCATCA 57.477 32.000 0.00 0.00 41.41 3.07
196 197 5.125097 CAGATCTTGGATTTTCACCCTCAAG 59.875 44.000 0.00 0.00 34.61 3.02
226 227 2.642427 CGTCATTGGATCCAACCATCA 58.358 47.619 29.32 6.68 39.82 3.07
234 235 3.279875 GCCGCCGTCATTGGATCC 61.280 66.667 4.20 4.20 0.00 3.36
241 242 2.586079 CTCAATCGCCGCCGTCAT 60.586 61.111 0.00 0.00 35.54 3.06
252 253 1.534729 AAAGGGAACACCGCTCAATC 58.465 50.000 0.00 0.00 46.96 2.67
254 255 1.407258 CAAAAAGGGAACACCGCTCAA 59.593 47.619 0.00 0.00 46.96 3.02
273 274 6.773976 AGTTCTTCAACATCAAAACCTTCA 57.226 33.333 0.00 0.00 34.60 3.02
335 336 4.917385 AGCTACAACAACAATCATACCCA 58.083 39.130 0.00 0.00 0.00 4.51
430 431 5.180680 ACAAATAGCGAACTCCTACAAAACC 59.819 40.000 0.00 0.00 0.00 3.27
445 446 3.775202 ACACTAGCTCAGACAAATAGCG 58.225 45.455 0.00 0.00 41.19 4.26
509 526 4.385825 ACATAATGAACACACGTCCAACT 58.614 39.130 0.00 0.00 0.00 3.16
559 576 5.552841 CGTCGATGAAAAAGAAGCGTAGATC 60.553 44.000 0.00 0.00 0.00 2.75
565 582 3.060761 TCATCGTCGATGAAAAAGAAGCG 59.939 43.478 30.60 5.12 44.70 4.68
593 610 5.253330 CCCAAAGAACTAGCATACCAGAAA 58.747 41.667 0.00 0.00 0.00 2.52
623 640 4.787598 AGACAGTCGAAAAATCATTGTGC 58.212 39.130 0.00 0.00 0.00 4.57
661 678 2.353803 CCCTTTCTTCACTGTACTCCGG 60.354 54.545 0.00 0.00 0.00 5.14
663 680 2.701107 GCCCTTTCTTCACTGTACTCC 58.299 52.381 0.00 0.00 0.00 3.85
665 682 1.968493 TCGCCCTTTCTTCACTGTACT 59.032 47.619 0.00 0.00 0.00 2.73
666 683 2.450609 TCGCCCTTTCTTCACTGTAC 57.549 50.000 0.00 0.00 0.00 2.90
692 709 2.969628 AGTAAGATGAAGTCTGGCCG 57.030 50.000 0.00 0.00 37.23 6.13
694 711 4.629200 CACTGAAGTAAGATGAAGTCTGGC 59.371 45.833 0.00 0.00 37.23 4.85
698 715 5.698545 ACAAGCACTGAAGTAAGATGAAGTC 59.301 40.000 0.00 0.00 0.00 3.01
704 721 5.047943 ACGACTACAAGCACTGAAGTAAGAT 60.048 40.000 0.00 0.00 0.00 2.40
708 725 3.364664 CGACGACTACAAGCACTGAAGTA 60.365 47.826 0.00 0.00 0.00 2.24
709 726 2.604855 CGACGACTACAAGCACTGAAGT 60.605 50.000 0.00 0.00 0.00 3.01
712 729 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
714 731 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
715 732 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
722 739 5.453567 TGTAGTATACCTAGCGACGACTA 57.546 43.478 0.00 0.00 42.12 2.59
730 747 7.442656 ACATCCATGTTTGTAGTATACCTAGC 58.557 38.462 0.00 0.00 38.21 3.42
851 868 0.107459 AGGGAAATCAGCGCCTCTTC 60.107 55.000 2.29 1.86 0.00 2.87
892 909 3.286329 AGTTAGGTGTTTGGTTTCCGT 57.714 42.857 0.00 0.00 0.00 4.69
908 925 9.279904 CACGTGTTTCTTTGTGAATAAAAGTTA 57.720 29.630 7.58 0.00 36.29 2.24
912 929 6.748198 GGTCACGTGTTTCTTTGTGAATAAAA 59.252 34.615 16.51 0.00 42.43 1.52
997 1014 1.097232 CCGTGTACGTGGGTCATCTA 58.903 55.000 0.00 0.00 37.74 1.98
1001 1018 3.993584 GGCCGTGTACGTGGGTCA 61.994 66.667 0.00 0.00 37.74 4.02
1003 1020 3.688159 GAGGCCGTGTACGTGGGT 61.688 66.667 0.00 0.00 37.74 4.51
1048 1065 2.164865 CTGCTGCGTCCCTTCAGTCT 62.165 60.000 0.00 0.00 33.09 3.24
1089 3667 0.583438 CGGCCATAGCTTTGTGATCG 59.417 55.000 2.24 0.00 39.73 3.69
1090 3668 1.599542 GTCGGCCATAGCTTTGTGATC 59.400 52.381 2.24 0.00 39.73 2.92
1097 3675 0.032678 CTCGATGTCGGCCATAGCTT 59.967 55.000 2.24 0.00 40.29 3.74
1243 3833 1.064463 TGCAGGATGGGATTCCTTGAC 60.064 52.381 2.01 0.00 43.88 3.18
1291 3881 1.965754 GCAGTCAAGAGCCCTCCGAT 61.966 60.000 0.00 0.00 0.00 4.18
1321 3911 2.218603 GAAAAGGAAGACGAACCAGCA 58.781 47.619 0.00 0.00 0.00 4.41
1336 3926 4.776953 CACGAGCGCGGCGAAAAG 62.777 66.667 28.54 15.51 43.17 2.27
1392 3982 6.010294 TCCGATTCGATCAAGTTATCTACC 57.990 41.667 7.83 0.00 0.00 3.18
1413 4003 0.460987 CCAGCAGACAAGGACGATCC 60.461 60.000 0.00 0.00 36.58 3.36
1446 4036 2.483745 TCGCAGCGACCTAGAACG 59.516 61.111 15.11 0.00 0.00 3.95
1504 4094 4.563580 CCAATTACAACACGCTACGATACA 59.436 41.667 0.00 0.00 0.00 2.29
1505 4095 4.563976 ACCAATTACAACACGCTACGATAC 59.436 41.667 0.00 0.00 0.00 2.24
1506 4096 4.746729 ACCAATTACAACACGCTACGATA 58.253 39.130 0.00 0.00 0.00 2.92
1507 4097 3.592059 ACCAATTACAACACGCTACGAT 58.408 40.909 0.00 0.00 0.00 3.73
1508 4098 3.029320 ACCAATTACAACACGCTACGA 57.971 42.857 0.00 0.00 0.00 3.43
1509 4099 3.799137 AACCAATTACAACACGCTACG 57.201 42.857 0.00 0.00 0.00 3.51
1510 4100 6.510638 GCCTATAACCAATTACAACACGCTAC 60.511 42.308 0.00 0.00 0.00 3.58
1540 4130 8.610035 GGCGTTAGCTATACAAAAGAAAAGTAT 58.390 33.333 0.00 0.00 44.37 2.12
1544 4134 6.651643 TCAGGCGTTAGCTATACAAAAGAAAA 59.348 34.615 0.00 0.00 44.37 2.29
1545 4135 6.091713 GTCAGGCGTTAGCTATACAAAAGAAA 59.908 38.462 0.00 0.00 44.37 2.52
1546 4136 5.579511 GTCAGGCGTTAGCTATACAAAAGAA 59.420 40.000 0.00 0.00 44.37 2.52
1547 4137 5.105473 AGTCAGGCGTTAGCTATACAAAAGA 60.105 40.000 0.00 0.00 44.37 2.52
1548 4138 5.109903 AGTCAGGCGTTAGCTATACAAAAG 58.890 41.667 0.00 0.00 44.37 2.27
1549 4139 5.080969 AGTCAGGCGTTAGCTATACAAAA 57.919 39.130 0.00 0.00 44.37 2.44
1550 4140 4.401519 AGAGTCAGGCGTTAGCTATACAAA 59.598 41.667 0.00 0.00 44.37 2.83
1551 4141 3.952323 AGAGTCAGGCGTTAGCTATACAA 59.048 43.478 0.00 0.00 44.37 2.41
1552 4142 3.552875 AGAGTCAGGCGTTAGCTATACA 58.447 45.455 0.00 0.00 44.37 2.29
1553 4143 3.564644 TGAGAGTCAGGCGTTAGCTATAC 59.435 47.826 0.00 0.00 44.37 1.47
1554 4144 3.816994 TGAGAGTCAGGCGTTAGCTATA 58.183 45.455 0.00 0.00 44.37 1.31
1555 4145 2.656002 TGAGAGTCAGGCGTTAGCTAT 58.344 47.619 0.00 0.00 44.37 2.97
1556 4146 2.124277 TGAGAGTCAGGCGTTAGCTA 57.876 50.000 0.00 0.00 44.37 3.32
1557 4147 1.257743 TTGAGAGTCAGGCGTTAGCT 58.742 50.000 0.00 0.00 44.37 3.32
1558 4148 2.159170 AGATTGAGAGTCAGGCGTTAGC 60.159 50.000 0.00 0.00 44.18 3.09
1559 4149 3.380004 AGAGATTGAGAGTCAGGCGTTAG 59.620 47.826 0.00 0.00 0.00 2.34
1560 4150 3.357203 AGAGATTGAGAGTCAGGCGTTA 58.643 45.455 0.00 0.00 0.00 3.18
1561 4151 2.175202 AGAGATTGAGAGTCAGGCGTT 58.825 47.619 0.00 0.00 0.00 4.84
1562 4152 1.846007 AGAGATTGAGAGTCAGGCGT 58.154 50.000 0.00 0.00 0.00 5.68
1563 4153 2.481104 GGAAGAGATTGAGAGTCAGGCG 60.481 54.545 0.00 0.00 0.00 5.52
1564 4154 2.765699 AGGAAGAGATTGAGAGTCAGGC 59.234 50.000 0.00 0.00 0.00 4.85
1565 4155 4.280819 AGAGGAAGAGATTGAGAGTCAGG 58.719 47.826 0.00 0.00 0.00 3.86
1566 4156 5.185635 ACAAGAGGAAGAGATTGAGAGTCAG 59.814 44.000 0.00 0.00 0.00 3.51
1567 4157 5.083122 ACAAGAGGAAGAGATTGAGAGTCA 58.917 41.667 0.00 0.00 0.00 3.41
1568 4158 5.659440 ACAAGAGGAAGAGATTGAGAGTC 57.341 43.478 0.00 0.00 0.00 3.36
1569 4159 7.732222 ATTACAAGAGGAAGAGATTGAGAGT 57.268 36.000 0.00 0.00 0.00 3.24
1575 4165 9.429359 CGCATATTATTACAAGAGGAAGAGATT 57.571 33.333 0.00 0.00 0.00 2.40
1576 4166 7.547370 GCGCATATTATTACAAGAGGAAGAGAT 59.453 37.037 0.30 0.00 0.00 2.75
1577 4167 6.868864 GCGCATATTATTACAAGAGGAAGAGA 59.131 38.462 0.30 0.00 0.00 3.10
1578 4168 6.870965 AGCGCATATTATTACAAGAGGAAGAG 59.129 38.462 11.47 0.00 0.00 2.85
1579 4169 6.759272 AGCGCATATTATTACAAGAGGAAGA 58.241 36.000 11.47 0.00 0.00 2.87
1580 4170 8.709386 ATAGCGCATATTATTACAAGAGGAAG 57.291 34.615 11.47 0.00 0.00 3.46
1610 4200 7.399245 TCCTCCTTTTCGAAAAGAAGAAAAA 57.601 32.000 39.33 19.50 46.39 1.94
1611 4201 7.284489 TCATCCTCCTTTTCGAAAAGAAGAAAA 59.716 33.333 39.33 23.47 46.39 2.29
1612 4202 6.770785 TCATCCTCCTTTTCGAAAAGAAGAAA 59.229 34.615 39.33 25.48 46.39 2.52
1613 4203 6.204882 GTCATCCTCCTTTTCGAAAAGAAGAA 59.795 38.462 39.33 23.06 46.39 2.52
1614 4204 5.701290 GTCATCCTCCTTTTCGAAAAGAAGA 59.299 40.000 39.33 31.68 46.39 2.87
1615 4205 5.106515 GGTCATCCTCCTTTTCGAAAAGAAG 60.107 44.000 39.33 32.59 46.39 2.85
1616 4206 4.760204 GGTCATCCTCCTTTTCGAAAAGAA 59.240 41.667 39.33 26.66 46.39 2.52
1617 4207 4.324267 GGTCATCCTCCTTTTCGAAAAGA 58.676 43.478 39.33 27.13 46.39 2.52
1618 4208 3.440522 GGGTCATCCTCCTTTTCGAAAAG 59.559 47.826 33.84 33.84 43.82 2.27
1619 4209 3.418047 GGGTCATCCTCCTTTTCGAAAA 58.582 45.455 21.35 21.35 0.00 2.29
1620 4210 2.290705 GGGGTCATCCTCCTTTTCGAAA 60.291 50.000 6.47 6.47 35.33 3.46
1621 4211 1.280998 GGGGTCATCCTCCTTTTCGAA 59.719 52.381 0.00 0.00 35.33 3.71
1622 4212 0.909623 GGGGTCATCCTCCTTTTCGA 59.090 55.000 0.00 0.00 35.33 3.71
1623 4213 0.912486 AGGGGTCATCCTCCTTTTCG 59.088 55.000 0.00 0.00 33.94 3.46
1624 4214 2.719531 GAGGGGTCATCCTCCTTTTC 57.280 55.000 0.00 0.00 45.75 2.29
1631 4221 0.551131 AAAGGCTGAGGGGTCATCCT 60.551 55.000 0.00 0.00 37.80 3.24
1632 4222 0.394899 CAAAGGCTGAGGGGTCATCC 60.395 60.000 0.00 0.00 0.00 3.51
1633 4223 1.034292 GCAAAGGCTGAGGGGTCATC 61.034 60.000 0.00 0.00 36.96 2.92
1634 4224 1.000396 GCAAAGGCTGAGGGGTCAT 60.000 57.895 0.00 0.00 36.96 3.06
1635 4225 1.792757 ATGCAAAGGCTGAGGGGTCA 61.793 55.000 0.00 0.00 41.91 4.02
1636 4226 0.613012 AATGCAAAGGCTGAGGGGTC 60.613 55.000 0.00 0.00 41.91 4.46
1637 4227 0.178924 AAATGCAAAGGCTGAGGGGT 60.179 50.000 0.00 0.00 41.91 4.95
1638 4228 0.978907 AAAATGCAAAGGCTGAGGGG 59.021 50.000 0.00 0.00 41.91 4.79
1639 4229 4.186159 CAATAAAATGCAAAGGCTGAGGG 58.814 43.478 0.00 0.00 41.91 4.30
1640 4230 3.619929 GCAATAAAATGCAAAGGCTGAGG 59.380 43.478 0.00 0.00 45.70 3.86
1641 4231 4.852609 GCAATAAAATGCAAAGGCTGAG 57.147 40.909 0.00 0.00 45.70 3.35
1660 4250 9.515226 ACTTTGTAAGGTCTTATTGAATAAGCA 57.485 29.630 17.83 7.97 41.52 3.91
1687 4277 8.758829 TGGTCACTTCAGACATATTAGTGTATT 58.241 33.333 0.00 0.00 40.29 1.89
1688 4278 8.306313 TGGTCACTTCAGACATATTAGTGTAT 57.694 34.615 0.00 0.00 40.29 2.29
1689 4279 7.712204 TGGTCACTTCAGACATATTAGTGTA 57.288 36.000 0.00 0.00 40.29 2.90
1690 4280 6.605471 TGGTCACTTCAGACATATTAGTGT 57.395 37.500 0.00 0.00 40.29 3.55
1691 4281 8.498054 AAATGGTCACTTCAGACATATTAGTG 57.502 34.615 0.00 0.00 40.29 2.74
1692 4282 8.950210 CAAAATGGTCACTTCAGACATATTAGT 58.050 33.333 0.00 0.00 40.29 2.24
1693 4283 9.166173 TCAAAATGGTCACTTCAGACATATTAG 57.834 33.333 0.00 0.00 40.29 1.73
1694 4284 8.946085 GTCAAAATGGTCACTTCAGACATATTA 58.054 33.333 0.00 0.00 40.29 0.98
1695 4285 7.361201 CGTCAAAATGGTCACTTCAGACATATT 60.361 37.037 0.00 0.00 40.29 1.28
1696 4286 6.092670 CGTCAAAATGGTCACTTCAGACATAT 59.907 38.462 0.00 0.00 40.29 1.78
1697 4287 5.408299 CGTCAAAATGGTCACTTCAGACATA 59.592 40.000 0.00 0.00 40.29 2.29
1698 4288 4.214119 CGTCAAAATGGTCACTTCAGACAT 59.786 41.667 0.00 0.00 40.29 3.06
1699 4289 3.559655 CGTCAAAATGGTCACTTCAGACA 59.440 43.478 0.00 0.00 40.29 3.41
1700 4290 3.807622 TCGTCAAAATGGTCACTTCAGAC 59.192 43.478 0.00 0.00 37.80 3.51
1701 4291 3.807622 GTCGTCAAAATGGTCACTTCAGA 59.192 43.478 0.00 0.00 0.00 3.27
1702 4292 3.559655 TGTCGTCAAAATGGTCACTTCAG 59.440 43.478 0.00 0.00 0.00 3.02
1703 4293 3.536570 TGTCGTCAAAATGGTCACTTCA 58.463 40.909 0.00 0.00 0.00 3.02
1704 4294 4.452455 AGATGTCGTCAAAATGGTCACTTC 59.548 41.667 0.00 0.00 0.00 3.01
1705 4295 4.389374 AGATGTCGTCAAAATGGTCACTT 58.611 39.130 0.00 0.00 0.00 3.16
1706 4296 4.008074 AGATGTCGTCAAAATGGTCACT 57.992 40.909 0.00 0.00 0.00 3.41
1707 4297 5.276395 CGATAGATGTCGTCAAAATGGTCAC 60.276 44.000 0.00 0.00 36.88 3.67
1708 4298 4.803613 CGATAGATGTCGTCAAAATGGTCA 59.196 41.667 0.00 0.00 36.88 4.02
1709 4299 4.318121 GCGATAGATGTCGTCAAAATGGTC 60.318 45.833 1.01 0.00 43.27 4.02
1710 4300 3.555956 GCGATAGATGTCGTCAAAATGGT 59.444 43.478 1.01 0.00 43.27 3.55
1711 4301 3.804325 AGCGATAGATGTCGTCAAAATGG 59.196 43.478 1.01 0.00 43.27 3.16
1712 4302 5.687730 AGTAGCGATAGATGTCGTCAAAATG 59.312 40.000 1.01 0.00 43.27 2.32
1713 4303 5.833082 AGTAGCGATAGATGTCGTCAAAAT 58.167 37.500 1.01 0.00 43.27 1.82
1714 4304 5.244785 AGTAGCGATAGATGTCGTCAAAA 57.755 39.130 1.01 0.00 43.27 2.44
1715 4305 4.261072 GGAGTAGCGATAGATGTCGTCAAA 60.261 45.833 1.01 0.00 43.27 2.69
1716 4306 3.250280 GGAGTAGCGATAGATGTCGTCAA 59.750 47.826 1.01 0.00 43.27 3.18
1717 4307 2.806818 GGAGTAGCGATAGATGTCGTCA 59.193 50.000 1.01 0.00 43.27 4.35
1718 4308 3.068560 AGGAGTAGCGATAGATGTCGTC 58.931 50.000 1.01 0.00 43.27 4.20
1719 4309 3.128852 AGGAGTAGCGATAGATGTCGT 57.871 47.619 1.01 0.00 43.27 4.34
1720 4310 4.271533 GGATAGGAGTAGCGATAGATGTCG 59.728 50.000 0.00 0.00 44.14 4.35
1721 4311 5.186942 TGGATAGGAGTAGCGATAGATGTC 58.813 45.833 0.00 0.00 39.76 3.06
1722 4312 5.180810 TGGATAGGAGTAGCGATAGATGT 57.819 43.478 0.00 0.00 39.76 3.06
1723 4313 6.707440 AATGGATAGGAGTAGCGATAGATG 57.293 41.667 0.00 0.00 39.76 2.90
1724 4314 6.892456 TCAAATGGATAGGAGTAGCGATAGAT 59.108 38.462 0.00 0.00 39.76 1.98
1725 4315 6.246163 TCAAATGGATAGGAGTAGCGATAGA 58.754 40.000 0.00 0.00 39.76 1.98
1726 4316 6.516739 TCAAATGGATAGGAGTAGCGATAG 57.483 41.667 0.00 0.00 0.00 2.08
1727 4317 6.493802 AGTTCAAATGGATAGGAGTAGCGATA 59.506 38.462 0.00 0.00 0.00 2.92
1728 4318 5.305644 AGTTCAAATGGATAGGAGTAGCGAT 59.694 40.000 0.00 0.00 0.00 4.58
1729 4319 4.649674 AGTTCAAATGGATAGGAGTAGCGA 59.350 41.667 0.00 0.00 0.00 4.93
1730 4320 4.747108 CAGTTCAAATGGATAGGAGTAGCG 59.253 45.833 0.00 0.00 0.00 4.26
1731 4321 5.675538 ACAGTTCAAATGGATAGGAGTAGC 58.324 41.667 0.00 0.00 0.00 3.58
1732 4322 6.878317 TGACAGTTCAAATGGATAGGAGTAG 58.122 40.000 0.00 0.00 0.00 2.57
1733 4323 6.127054 CCTGACAGTTCAAATGGATAGGAGTA 60.127 42.308 0.93 0.00 0.00 2.59
1734 4324 5.338708 CCTGACAGTTCAAATGGATAGGAGT 60.339 44.000 0.93 0.00 0.00 3.85
1735 4325 5.121811 CCTGACAGTTCAAATGGATAGGAG 58.878 45.833 0.93 0.00 0.00 3.69
1736 4326 4.626287 GCCTGACAGTTCAAATGGATAGGA 60.626 45.833 8.05 0.00 0.00 2.94
1737 4327 3.629398 GCCTGACAGTTCAAATGGATAGG 59.371 47.826 0.93 0.00 0.00 2.57
1738 4328 3.629398 GGCCTGACAGTTCAAATGGATAG 59.371 47.826 0.00 0.00 0.00 2.08
1739 4329 3.620488 GGCCTGACAGTTCAAATGGATA 58.380 45.455 0.00 0.00 0.00 2.59
1740 4330 2.450476 GGCCTGACAGTTCAAATGGAT 58.550 47.619 0.00 0.00 0.00 3.41
1741 4331 1.881925 CGGCCTGACAGTTCAAATGGA 60.882 52.381 0.00 0.00 0.00 3.41
1742 4332 0.523072 CGGCCTGACAGTTCAAATGG 59.477 55.000 0.00 0.00 0.00 3.16
1743 4333 0.109597 GCGGCCTGACAGTTCAAATG 60.110 55.000 0.00 0.00 0.00 2.32
1744 4334 0.537143 TGCGGCCTGACAGTTCAAAT 60.537 50.000 0.00 0.00 0.00 2.32
1745 4335 0.537143 ATGCGGCCTGACAGTTCAAA 60.537 50.000 0.00 0.00 0.00 2.69
1746 4336 0.323302 TATGCGGCCTGACAGTTCAA 59.677 50.000 0.00 0.00 0.00 2.69
1747 4337 0.391130 GTATGCGGCCTGACAGTTCA 60.391 55.000 0.00 0.00 0.00 3.18
1748 4338 1.090052 GGTATGCGGCCTGACAGTTC 61.090 60.000 0.00 0.00 0.00 3.01
1749 4339 1.078426 GGTATGCGGCCTGACAGTT 60.078 57.895 0.00 0.00 0.00 3.16
1750 4340 2.584608 GGTATGCGGCCTGACAGT 59.415 61.111 0.00 0.00 0.00 3.55
1751 4341 2.203070 GGGTATGCGGCCTGACAG 60.203 66.667 0.00 0.00 0.00 3.51
1752 4342 4.155733 CGGGTATGCGGCCTGACA 62.156 66.667 0.00 0.00 34.35 3.58
1753 4343 4.910585 CCGGGTATGCGGCCTGAC 62.911 72.222 0.00 0.00 34.35 3.51
1755 4345 4.910585 GTCCGGGTATGCGGCCTG 62.911 72.222 0.00 0.00 0.00 4.85
1757 4347 4.250305 ATGTCCGGGTATGCGGCC 62.250 66.667 0.00 0.00 0.00 6.13
1758 4348 2.665185 GATGTCCGGGTATGCGGC 60.665 66.667 0.00 0.00 0.00 6.53
1759 4349 1.594293 GTGATGTCCGGGTATGCGG 60.594 63.158 0.00 0.00 0.00 5.69
1760 4350 0.249868 ATGTGATGTCCGGGTATGCG 60.250 55.000 0.00 0.00 0.00 4.73
1761 4351 1.202639 TGATGTGATGTCCGGGTATGC 60.203 52.381 0.00 0.00 0.00 3.14
1762 4352 2.908688 TGATGTGATGTCCGGGTATG 57.091 50.000 0.00 0.00 0.00 2.39
1763 4353 3.808728 CTTTGATGTGATGTCCGGGTAT 58.191 45.455 0.00 0.00 0.00 2.73
1764 4354 2.679639 GCTTTGATGTGATGTCCGGGTA 60.680 50.000 0.00 0.00 0.00 3.69
1765 4355 1.950484 GCTTTGATGTGATGTCCGGGT 60.950 52.381 0.00 0.00 0.00 5.28
1766 4356 0.734889 GCTTTGATGTGATGTCCGGG 59.265 55.000 0.00 0.00 0.00 5.73
1767 4357 1.131126 GTGCTTTGATGTGATGTCCGG 59.869 52.381 0.00 0.00 0.00 5.14
1768 4358 1.805943 TGTGCTTTGATGTGATGTCCG 59.194 47.619 0.00 0.00 0.00 4.79
1769 4359 3.004629 TGTTGTGCTTTGATGTGATGTCC 59.995 43.478 0.00 0.00 0.00 4.02
1770 4360 4.227512 TGTTGTGCTTTGATGTGATGTC 57.772 40.909 0.00 0.00 0.00 3.06
1771 4361 4.278919 TGATGTTGTGCTTTGATGTGATGT 59.721 37.500 0.00 0.00 0.00 3.06
1772 4362 4.800784 TGATGTTGTGCTTTGATGTGATG 58.199 39.130 0.00 0.00 0.00 3.07
1773 4363 5.456548 TTGATGTTGTGCTTTGATGTGAT 57.543 34.783 0.00 0.00 0.00 3.06
1774 4364 4.915158 TTGATGTTGTGCTTTGATGTGA 57.085 36.364 0.00 0.00 0.00 3.58
1775 4365 5.557514 GCTTTTGATGTTGTGCTTTGATGTG 60.558 40.000 0.00 0.00 0.00 3.21
1776 4366 4.508861 GCTTTTGATGTTGTGCTTTGATGT 59.491 37.500 0.00 0.00 0.00 3.06
1777 4367 4.084223 GGCTTTTGATGTTGTGCTTTGATG 60.084 41.667 0.00 0.00 0.00 3.07
1778 4368 4.060205 GGCTTTTGATGTTGTGCTTTGAT 58.940 39.130 0.00 0.00 0.00 2.57
1779 4369 3.456280 GGCTTTTGATGTTGTGCTTTGA 58.544 40.909 0.00 0.00 0.00 2.69
1780 4370 2.219216 CGGCTTTTGATGTTGTGCTTTG 59.781 45.455 0.00 0.00 0.00 2.77
1781 4371 2.100584 TCGGCTTTTGATGTTGTGCTTT 59.899 40.909 0.00 0.00 0.00 3.51
1782 4372 1.680735 TCGGCTTTTGATGTTGTGCTT 59.319 42.857 0.00 0.00 0.00 3.91
1783 4373 1.317613 TCGGCTTTTGATGTTGTGCT 58.682 45.000 0.00 0.00 0.00 4.40
1784 4374 2.053627 CTTCGGCTTTTGATGTTGTGC 58.946 47.619 0.00 0.00 0.00 4.57
1785 4375 2.664916 CCTTCGGCTTTTGATGTTGTG 58.335 47.619 0.00 0.00 0.00 3.33
1786 4376 1.000274 GCCTTCGGCTTTTGATGTTGT 60.000 47.619 0.00 0.00 46.69 3.32
1787 4377 1.701704 GCCTTCGGCTTTTGATGTTG 58.298 50.000 0.00 0.00 46.69 3.33
1799 4389 1.000896 ACTTGATTGGGGCCTTCGG 60.001 57.895 0.84 0.00 0.00 4.30
1800 4390 0.322456 TGACTTGATTGGGGCCTTCG 60.322 55.000 0.84 0.00 0.00 3.79
1801 4391 1.923356 TTGACTTGATTGGGGCCTTC 58.077 50.000 0.84 0.00 0.00 3.46
1802 4392 2.397044 TTTGACTTGATTGGGGCCTT 57.603 45.000 0.84 0.00 0.00 4.35
1803 4393 2.568509 CAATTTGACTTGATTGGGGCCT 59.431 45.455 0.84 0.00 31.28 5.19
1804 4394 2.936553 GCAATTTGACTTGATTGGGGCC 60.937 50.000 0.00 0.00 34.60 5.80
1805 4395 2.027837 AGCAATTTGACTTGATTGGGGC 60.028 45.455 0.00 0.00 34.60 5.80
1806 4396 3.592059 CAGCAATTTGACTTGATTGGGG 58.408 45.455 0.00 0.00 34.60 4.96
1807 4397 3.592059 CCAGCAATTTGACTTGATTGGG 58.408 45.455 0.00 0.00 34.60 4.12
1808 4398 3.007182 ACCCAGCAATTTGACTTGATTGG 59.993 43.478 0.00 0.00 34.47 3.16
1809 4399 4.021719 AGACCCAGCAATTTGACTTGATTG 60.022 41.667 0.00 0.00 36.56 2.67
1810 4400 4.021719 CAGACCCAGCAATTTGACTTGATT 60.022 41.667 0.00 0.00 0.00 2.57
1811 4401 3.508793 CAGACCCAGCAATTTGACTTGAT 59.491 43.478 0.00 0.00 0.00 2.57
1812 4402 2.886523 CAGACCCAGCAATTTGACTTGA 59.113 45.455 0.00 0.00 0.00 3.02
1813 4403 2.029649 CCAGACCCAGCAATTTGACTTG 60.030 50.000 0.00 0.00 0.00 3.16
1814 4404 2.242043 CCAGACCCAGCAATTTGACTT 58.758 47.619 0.00 0.00 0.00 3.01
1815 4405 1.548582 CCCAGACCCAGCAATTTGACT 60.549 52.381 0.00 0.00 0.00 3.41
1816 4406 0.890683 CCCAGACCCAGCAATTTGAC 59.109 55.000 0.00 0.00 0.00 3.18
1817 4407 0.482446 ACCCAGACCCAGCAATTTGA 59.518 50.000 0.00 0.00 0.00 2.69
1818 4408 0.890683 GACCCAGACCCAGCAATTTG 59.109 55.000 0.00 0.00 0.00 2.32
1819 4409 0.482446 TGACCCAGACCCAGCAATTT 59.518 50.000 0.00 0.00 0.00 1.82
1820 4410 0.251341 GTGACCCAGACCCAGCAATT 60.251 55.000 0.00 0.00 0.00 2.32
1821 4411 1.380302 GTGACCCAGACCCAGCAAT 59.620 57.895 0.00 0.00 0.00 3.56
1822 4412 2.075566 TGTGACCCAGACCCAGCAA 61.076 57.895 0.00 0.00 0.00 3.91
1823 4413 2.447572 TGTGACCCAGACCCAGCA 60.448 61.111 0.00 0.00 0.00 4.41
1824 4414 2.032681 GTGTGACCCAGACCCAGC 59.967 66.667 0.00 0.00 0.00 4.85
1825 4415 1.071471 GTGTGTGACCCAGACCCAG 59.929 63.158 0.00 0.00 31.28 4.45
1826 4416 1.383943 AGTGTGTGACCCAGACCCA 60.384 57.895 0.00 0.00 38.07 4.51
1827 4417 1.071471 CAGTGTGTGACCCAGACCC 59.929 63.158 0.00 0.00 38.07 4.46
1828 4418 1.071471 CCAGTGTGTGACCCAGACC 59.929 63.158 0.00 0.00 38.07 3.85
1829 4419 0.249911 GACCAGTGTGTGACCCAGAC 60.250 60.000 0.00 0.00 37.60 3.51
1830 4420 1.407656 GGACCAGTGTGTGACCCAGA 61.408 60.000 0.00 0.00 0.00 3.86
1831 4421 1.071471 GGACCAGTGTGTGACCCAG 59.929 63.158 0.00 0.00 0.00 4.45
1832 4422 1.690985 TGGACCAGTGTGTGACCCA 60.691 57.895 0.00 0.00 0.00 4.51
1833 4423 1.071471 CTGGACCAGTGTGTGACCC 59.929 63.158 13.84 0.00 0.00 4.46
1834 4424 1.598130 GCTGGACCAGTGTGTGACC 60.598 63.158 22.58 0.00 33.43 4.02
1835 4425 1.956170 CGCTGGACCAGTGTGTGAC 60.956 63.158 24.41 5.05 37.23 3.67
1836 4426 2.421314 CGCTGGACCAGTGTGTGA 59.579 61.111 24.41 0.00 37.23 3.58
1837 4427 3.349006 GCGCTGGACCAGTGTGTG 61.349 66.667 30.70 11.64 43.09 3.82
1838 4428 3.860605 TGCGCTGGACCAGTGTGT 61.861 61.111 30.70 0.00 43.09 3.72
1839 4429 3.349006 GTGCGCTGGACCAGTGTG 61.349 66.667 30.70 18.42 43.09 3.82
1840 4430 3.521529 GAGTGCGCTGGACCAGTGT 62.522 63.158 30.70 15.43 43.09 3.55
1841 4431 2.740055 GAGTGCGCTGGACCAGTG 60.740 66.667 27.60 27.60 43.89 3.66
1842 4432 2.919856 AGAGTGCGCTGGACCAGT 60.920 61.111 22.58 1.99 33.43 4.00
1843 4433 2.125753 GAGAGTGCGCTGGACCAG 60.126 66.667 17.83 17.83 34.12 4.00
1844 4434 2.917227 TGAGAGTGCGCTGGACCA 60.917 61.111 3.44 0.00 0.00 4.02
1845 4435 2.433318 GTGAGAGTGCGCTGGACC 60.433 66.667 3.44 0.00 0.00 4.46
1846 4436 2.433318 GGTGAGAGTGCGCTGGAC 60.433 66.667 3.44 0.00 0.00 4.02
1847 4437 4.056125 CGGTGAGAGTGCGCTGGA 62.056 66.667 3.44 0.00 0.00 3.86
1872 4462 1.354155 CCACTGCAGCATACGCATG 59.646 57.895 15.27 1.23 42.27 4.06
1873 4463 2.475466 GCCACTGCAGCATACGCAT 61.475 57.895 15.27 0.00 42.27 4.73
1874 4464 3.126879 GCCACTGCAGCATACGCA 61.127 61.111 15.27 0.00 42.27 5.24
1875 4465 3.880846 GGCCACTGCAGCATACGC 61.881 66.667 15.27 8.05 40.13 4.42
1876 4466 3.566853 CGGCCACTGCAGCATACG 61.567 66.667 15.27 10.34 40.13 3.06
1877 4467 2.436646 ACGGCCACTGCAGCATAC 60.437 61.111 15.27 0.31 40.13 2.39
1878 4468 2.125147 GACGGCCACTGCAGCATA 60.125 61.111 15.27 0.00 40.13 3.14
1879 4469 3.633609 ATGACGGCCACTGCAGCAT 62.634 57.895 15.27 4.15 40.13 3.79
1880 4470 4.334118 ATGACGGCCACTGCAGCA 62.334 61.111 15.27 1.46 40.13 4.41
1881 4471 3.503363 GATGACGGCCACTGCAGC 61.503 66.667 15.27 0.00 40.13 5.25
1882 4472 1.434622 GATGATGACGGCCACTGCAG 61.435 60.000 13.48 13.48 40.13 4.41
1883 4473 1.450134 GATGATGACGGCCACTGCA 60.450 57.895 2.24 0.00 40.13 4.41
1884 4474 0.816825 ATGATGATGACGGCCACTGC 60.817 55.000 2.24 0.00 0.00 4.40
1885 4475 1.202615 AGATGATGATGACGGCCACTG 60.203 52.381 2.24 0.00 0.00 3.66
1886 4476 1.126488 AGATGATGATGACGGCCACT 58.874 50.000 2.24 0.00 0.00 4.00
1887 4477 1.869767 GAAGATGATGATGACGGCCAC 59.130 52.381 2.24 0.00 0.00 5.01
1888 4478 1.202687 GGAAGATGATGATGACGGCCA 60.203 52.381 2.24 0.00 0.00 5.36
1889 4479 1.202687 TGGAAGATGATGATGACGGCC 60.203 52.381 0.00 0.00 0.00 6.13
1890 4480 1.869767 GTGGAAGATGATGATGACGGC 59.130 52.381 0.00 0.00 0.00 5.68
1891 4481 2.158914 TGGTGGAAGATGATGATGACGG 60.159 50.000 0.00 0.00 0.00 4.79
1892 4482 2.868583 GTGGTGGAAGATGATGATGACG 59.131 50.000 0.00 0.00 0.00 4.35
1893 4483 4.148128 AGTGGTGGAAGATGATGATGAC 57.852 45.455 0.00 0.00 0.00 3.06
1894 4484 4.964897 ACTAGTGGTGGAAGATGATGATGA 59.035 41.667 0.00 0.00 0.00 2.92
1895 4485 5.287674 ACTAGTGGTGGAAGATGATGATG 57.712 43.478 0.00 0.00 0.00 3.07
1896 4486 6.377080 TCTACTAGTGGTGGAAGATGATGAT 58.623 40.000 5.39 0.00 32.47 2.45
1897 4487 5.766590 TCTACTAGTGGTGGAAGATGATGA 58.233 41.667 5.39 0.00 32.47 2.92
1898 4488 6.471233 TTCTACTAGTGGTGGAAGATGATG 57.529 41.667 5.39 0.00 39.83 3.07
1899 4489 7.038302 TGTTTTCTACTAGTGGTGGAAGATGAT 60.038 37.037 5.39 0.00 44.16 2.45
1900 4490 6.269077 TGTTTTCTACTAGTGGTGGAAGATGA 59.731 38.462 5.39 0.00 44.16 2.92
1901 4491 6.464222 TGTTTTCTACTAGTGGTGGAAGATG 58.536 40.000 5.39 0.00 44.16 2.90
1902 4492 6.681729 TGTTTTCTACTAGTGGTGGAAGAT 57.318 37.500 5.39 0.00 44.16 2.40
1903 4493 6.463897 CCTTGTTTTCTACTAGTGGTGGAAGA 60.464 42.308 5.39 0.00 44.16 2.87
1904 4494 5.701290 CCTTGTTTTCTACTAGTGGTGGAAG 59.299 44.000 5.39 3.10 44.16 3.46
1905 4495 5.617252 CCTTGTTTTCTACTAGTGGTGGAA 58.383 41.667 5.39 1.12 42.32 3.53
1906 4496 4.504340 GCCTTGTTTTCTACTAGTGGTGGA 60.504 45.833 5.39 0.00 33.58 4.02
1907 4497 3.751698 GCCTTGTTTTCTACTAGTGGTGG 59.248 47.826 5.39 0.34 0.00 4.61
1908 4498 4.642429 AGCCTTGTTTTCTACTAGTGGTG 58.358 43.478 5.39 0.00 0.00 4.17
1909 4499 4.976540 AGCCTTGTTTTCTACTAGTGGT 57.023 40.909 5.39 0.00 0.00 4.16
1910 4500 5.107065 CGAAAGCCTTGTTTTCTACTAGTGG 60.107 44.000 5.39 1.87 32.09 4.00
2033 4628 4.047125 CCGGGACCAATGCCCACT 62.047 66.667 0.00 0.00 46.36 4.00
2068 4663 1.488705 TTCGTGCCAGGAACCAGGAT 61.489 55.000 6.47 0.00 0.00 3.24
2112 4707 3.714798 ACCGGGACAAATATATGTGGTCT 59.285 43.478 6.32 0.00 32.57 3.85
2114 4709 4.457466 GAACCGGGACAAATATATGTGGT 58.543 43.478 6.32 0.00 32.57 4.16
2142 4737 4.452733 CCCTCTGTCCCGGTTCGC 62.453 72.222 0.00 0.00 0.00 4.70
2177 4779 1.193323 TTTATCCCGGTTCGTGGCTA 58.807 50.000 0.00 0.00 0.00 3.93
2199 4801 5.163447 GGCGATGAGGTATATATAGGCAACA 60.163 44.000 0.00 0.00 41.41 3.33
2327 4930 1.641577 CTTAACTAGTGTGGCTCGGC 58.358 55.000 0.00 0.00 0.00 5.54
2354 4957 1.480137 CTGGAGGTCGAGCTTCAAGAT 59.520 52.381 24.97 0.00 0.00 2.40
2374 4977 0.183731 ATCTCGGGGAAAATGGAGGC 59.816 55.000 0.00 0.00 0.00 4.70
2375 4978 2.689983 CAAATCTCGGGGAAAATGGAGG 59.310 50.000 0.00 0.00 0.00 4.30
2418 5021 1.152419 TCAAGACGGGGACAGGACA 60.152 57.895 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.