Multiple sequence alignment - TraesCS6B01G121700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G121700 chr6B 100.000 2649 0 0 1 2649 116351015 116353663 0.000000e+00 4892
1 TraesCS6B01G121700 chr6B 79.717 848 108 34 748 1550 116106841 116107669 2.980000e-154 555
2 TraesCS6B01G121700 chr6A 89.474 1615 108 29 13 1604 60715603 60717178 0.000000e+00 1984
3 TraesCS6B01G121700 chr6A 89.918 486 23 7 2129 2604 60717653 60718122 1.050000e-168 603
4 TraesCS6B01G121700 chr6A 80.071 843 101 34 748 1544 60492464 60493285 4.950000e-157 564
5 TraesCS6B01G121700 chr6A 91.736 121 6 3 1601 1717 60717304 60717424 5.870000e-37 165
6 TraesCS6B01G121700 chr6D 80.872 826 95 30 748 1544 46860977 46861768 2.270000e-165 592


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G121700 chr6B 116351015 116353663 2648 False 4892.000000 4892 100.000 1 2649 1 chr6B.!!$F2 2648
1 TraesCS6B01G121700 chr6B 116106841 116107669 828 False 555.000000 555 79.717 748 1550 1 chr6B.!!$F1 802
2 TraesCS6B01G121700 chr6A 60715603 60718122 2519 False 917.333333 1984 90.376 13 2604 3 chr6A.!!$F2 2591
3 TraesCS6B01G121700 chr6A 60492464 60493285 821 False 564.000000 564 80.071 748 1544 1 chr6A.!!$F1 796
4 TraesCS6B01G121700 chr6D 46860977 46861768 791 False 592.000000 592 80.872 748 1544 1 chr6D.!!$F1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 355 0.324943 TCCCTGTCAACCAGCTAAGC 59.675 55.0 0.0 0.0 40.06 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 2251 0.032615 TTTTGGGCCAGGAGTTGTGT 60.033 50.0 6.23 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.153489 CACCACAGAGCGGATCCTG 60.153 63.158 10.75 3.48 36.53 3.86
91 92 4.487948 CACCTTGCAAGTCACCATTAATG 58.512 43.478 24.35 8.58 0.00 1.90
116 119 1.672881 GCGGAGACCATTGATTTGAGG 59.327 52.381 0.00 0.00 0.00 3.86
118 121 2.726821 GGAGACCATTGATTTGAGGCA 58.273 47.619 0.00 0.00 0.00 4.75
148 151 4.516321 CACATCAACTTGAGACAATGGACA 59.484 41.667 0.00 0.00 0.00 4.02
150 153 3.743521 TCAACTTGAGACAATGGACAGG 58.256 45.455 0.00 0.00 0.00 4.00
154 157 1.450312 GAGACAATGGACAGGCCGG 60.450 63.158 0.00 0.00 40.66 6.13
186 189 2.506472 GAGGCCAAGGACCGGATC 59.494 66.667 9.46 1.18 0.00 3.36
193 196 2.370445 AAGGACCGGATCTGGCAGG 61.370 63.158 21.17 0.68 0.00 4.85
217 220 3.390521 CCAGCTAGGACGGTGGCA 61.391 66.667 0.00 0.00 44.54 4.92
299 303 2.592574 CGCATGACGGGGATGCAT 60.593 61.111 0.00 0.00 45.50 3.96
309 313 1.202734 CGGGGATGCATTCACAGATCT 60.203 52.381 8.27 0.00 0.00 2.75
311 315 2.158711 GGGGATGCATTCACAGATCTGA 60.159 50.000 29.27 7.43 0.00 3.27
312 316 2.877168 GGGATGCATTCACAGATCTGAC 59.123 50.000 29.27 10.85 0.00 3.51
313 317 2.543012 GGATGCATTCACAGATCTGACG 59.457 50.000 29.27 18.40 0.00 4.35
318 322 3.428725 GCATTCACAGATCTGACGTCTCT 60.429 47.826 29.27 8.59 0.00 3.10
335 339 1.807742 CTCTATCGACGGATGAGTCCC 59.192 57.143 0.00 0.00 41.83 4.46
336 340 1.420514 TCTATCGACGGATGAGTCCCT 59.579 52.381 0.00 0.00 41.83 4.20
348 352 1.267121 GAGTCCCTGTCAACCAGCTA 58.733 55.000 0.00 0.00 40.06 3.32
351 355 0.324943 TCCCTGTCAACCAGCTAAGC 59.675 55.000 0.00 0.00 40.06 3.09
352 356 0.326264 CCCTGTCAACCAGCTAAGCT 59.674 55.000 0.00 0.00 40.06 3.74
353 357 1.677217 CCCTGTCAACCAGCTAAGCTC 60.677 57.143 0.00 0.00 40.06 4.09
354 358 1.354040 CTGTCAACCAGCTAAGCTCG 58.646 55.000 0.00 0.00 36.40 5.03
359 377 0.614979 AACCAGCTAAGCTCGAGGGA 60.615 55.000 15.58 0.00 36.40 4.20
363 381 1.175983 AGCTAAGCTCGAGGGATCCG 61.176 60.000 15.58 0.00 30.62 4.18
385 403 4.677151 AGGGGCGGGAAGAAGGGT 62.677 66.667 0.00 0.00 0.00 4.34
393 411 1.298667 GGAAGAAGGGTGGCGCTAA 59.701 57.895 7.64 0.00 0.00 3.09
476 494 0.449388 GAATGGCCGTTCAAGCTGAG 59.551 55.000 29.20 0.00 0.00 3.35
481 499 2.328099 CCGTTCAAGCTGAGGTGGC 61.328 63.158 0.00 0.00 0.00 5.01
517 535 6.478512 AAAAAGAAACTGAGGTGGCAAATA 57.521 33.333 0.00 0.00 0.00 1.40
522 540 4.322057 AACTGAGGTGGCAAATAATCCT 57.678 40.909 0.00 0.00 0.00 3.24
558 576 6.482524 AGGTGGTAAATTAACCTCTTTCTCC 58.517 40.000 0.00 0.00 40.34 3.71
569 587 9.997172 ATTAACCTCTTTCTCCTTTTAATGGAT 57.003 29.630 0.00 0.00 32.56 3.41
602 620 7.581213 TCCTACATTTTGCTCAGAAAAGAAA 57.419 32.000 0.00 0.00 0.00 2.52
615 633 7.308229 GCTCAGAAAAGAAAAGCATTCTAGACA 60.308 37.037 5.34 0.00 31.25 3.41
616 634 8.450578 TCAGAAAAGAAAAGCATTCTAGACAA 57.549 30.769 5.34 0.00 31.25 3.18
622 640 7.750229 AGAAAAGCATTCTAGACAATTCACA 57.250 32.000 3.20 0.00 0.00 3.58
690 708 3.910817 GCATTGGGCACATCAACAA 57.089 47.368 0.00 0.00 43.97 2.83
694 712 3.119029 GCATTGGGCACATCAACAACTAT 60.119 43.478 0.00 0.00 43.97 2.12
704 722 7.975616 GGCACATCAACAACTATGATACAAAAT 59.024 33.333 0.00 0.00 35.80 1.82
708 726 8.810427 CATCAACAACTATGATACAAAATTGGC 58.190 33.333 0.00 0.00 35.80 4.52
713 731 8.462016 ACAACTATGATACAAAATTGGCTCTTC 58.538 33.333 0.00 0.00 0.00 2.87
722 740 2.262774 ATTGGCTCTTCCTCGCCCAG 62.263 60.000 0.00 0.00 45.71 4.45
738 760 3.155501 GCCCAGTCATATCGTAGTACCT 58.844 50.000 0.00 0.00 0.00 3.08
859 883 3.706594 CCTGCTGAGTTCTATCCTTGGTA 59.293 47.826 0.00 0.00 0.00 3.25
878 902 5.982465 GGTAATTACCGCCGTAACATTAA 57.018 39.130 18.70 0.00 37.28 1.40
879 903 6.356757 GGTAATTACCGCCGTAACATTAAA 57.643 37.500 18.70 0.00 37.28 1.52
905 929 5.153513 CACCATGTAATCCAAACAAACTCG 58.846 41.667 0.00 0.00 0.00 4.18
907 931 5.710099 ACCATGTAATCCAAACAAACTCGAT 59.290 36.000 0.00 0.00 0.00 3.59
921 945 7.531280 ACAAACTCGATCATCTCTACAATTG 57.469 36.000 3.24 3.24 0.00 2.32
1036 1081 1.816835 CAAGCCACAACTCATCAGCAT 59.183 47.619 0.00 0.00 0.00 3.79
1113 1177 0.894835 TCGTGATCCTACTGCAAGCA 59.105 50.000 0.00 0.00 37.60 3.91
1129 1208 2.468670 GCATCCACGTTATGCGCCA 61.469 57.895 14.86 0.00 46.11 5.69
1356 1438 2.112297 GCCAAGGTGGTGGACGAA 59.888 61.111 0.00 0.00 41.65 3.85
1386 1468 1.607467 GCAGGGGTGCAAGGACAAT 60.607 57.895 0.00 0.00 34.41 2.71
1491 1585 2.496828 GAAGCCCACCATGCAAGCAC 62.497 60.000 0.00 0.00 0.00 4.40
1581 1675 3.055458 TGTTATCGATGGAGTCAAGGCAA 60.055 43.478 8.54 0.00 0.00 4.52
1586 1680 2.508526 GATGGAGTCAAGGCAAGTGTT 58.491 47.619 0.00 0.00 0.00 3.32
1625 1848 1.693627 TCTCGATGGGTAGGAGCTTC 58.306 55.000 0.00 0.00 0.00 3.86
1680 1903 4.511082 CGGATTTGCCAAAACTGTTTTCAT 59.489 37.500 15.17 3.83 35.94 2.57
1688 1915 6.705381 TGCCAAAACTGTTTTCATTTAGATGG 59.295 34.615 15.17 11.87 33.93 3.51
1690 1917 7.441017 CCAAAACTGTTTTCATTTAGATGGGA 58.559 34.615 15.17 0.00 33.93 4.37
1709 1936 4.994852 TGGGAATTAACAAAGTCTCGTCTG 59.005 41.667 0.00 0.00 0.00 3.51
1717 1944 5.049398 ACAAAGTCTCGTCTGACTCATAC 57.951 43.478 6.21 0.00 45.49 2.39
1736 2116 7.761704 ACTCATACACTGTGAACACTGATATTC 59.238 37.037 15.86 0.00 34.80 1.75
1739 2119 3.062639 CACTGTGAACACTGATATTCGCC 59.937 47.826 16.28 0.00 35.00 5.54
1752 2132 1.504359 ATTCGCCTGACGTTCGAAAA 58.496 45.000 15.73 0.00 43.93 2.29
1813 2193 4.427661 GCACGAGCTGCCGTCTCT 62.428 66.667 12.13 0.00 41.29 3.10
1814 2194 3.052620 GCACGAGCTGCCGTCTCTA 62.053 63.158 12.13 0.00 41.29 2.43
1815 2195 1.226435 CACGAGCTGCCGTCTCTAC 60.226 63.158 12.13 0.00 41.29 2.59
1816 2196 2.408241 ACGAGCTGCCGTCTCTACC 61.408 63.158 9.77 0.00 38.56 3.18
1817 2197 2.409651 GAGCTGCCGTCTCTACCG 59.590 66.667 0.00 0.00 0.00 4.02
1818 2198 2.045242 AGCTGCCGTCTCTACCGA 60.045 61.111 0.00 0.00 0.00 4.69
1819 2199 1.654954 GAGCTGCCGTCTCTACCGAA 61.655 60.000 0.00 0.00 0.00 4.30
1820 2200 1.516603 GCTGCCGTCTCTACCGAAC 60.517 63.158 0.00 0.00 0.00 3.95
1821 2201 1.226323 CTGCCGTCTCTACCGAACG 60.226 63.158 0.00 0.00 0.00 3.95
1822 2202 1.642037 CTGCCGTCTCTACCGAACGA 61.642 60.000 0.00 0.00 0.00 3.85
1823 2203 1.226239 GCCGTCTCTACCGAACGAC 60.226 63.158 0.00 0.00 0.00 4.34
1824 2204 1.427020 CCGTCTCTACCGAACGACC 59.573 63.158 0.00 0.00 0.00 4.79
1825 2205 1.300971 CCGTCTCTACCGAACGACCA 61.301 60.000 0.00 0.00 0.00 4.02
1826 2206 0.731417 CGTCTCTACCGAACGACCAT 59.269 55.000 0.00 0.00 0.00 3.55
1827 2207 1.531264 CGTCTCTACCGAACGACCATG 60.531 57.143 0.00 0.00 0.00 3.66
1828 2208 0.454600 TCTCTACCGAACGACCATGC 59.545 55.000 0.00 0.00 0.00 4.06
1829 2209 0.866061 CTCTACCGAACGACCATGCG 60.866 60.000 0.00 0.00 37.29 4.73
1830 2210 2.507547 TACCGAACGACCATGCGC 60.508 61.111 0.00 0.00 33.86 6.09
1831 2211 3.284133 TACCGAACGACCATGCGCA 62.284 57.895 14.96 14.96 33.86 6.09
1832 2212 2.566057 TACCGAACGACCATGCGCAT 62.566 55.000 19.28 19.28 33.86 4.73
1833 2213 2.321060 CGAACGACCATGCGCATC 59.679 61.111 22.51 9.99 33.86 3.91
1834 2214 2.321060 GAACGACCATGCGCATCG 59.679 61.111 25.53 25.53 41.60 3.84
1847 2227 3.197790 CATCGCTTCGGCTGGGTG 61.198 66.667 0.00 0.00 39.13 4.61
1848 2228 4.473520 ATCGCTTCGGCTGGGTGG 62.474 66.667 0.00 0.00 39.13 4.61
1868 2248 0.519077 GCTGAGGCCTTTTTCTGTCG 59.481 55.000 6.77 0.00 0.00 4.35
1869 2249 1.160137 CTGAGGCCTTTTTCTGTCGG 58.840 55.000 6.77 0.00 0.00 4.79
1870 2250 0.250727 TGAGGCCTTTTTCTGTCGGG 60.251 55.000 6.77 0.00 0.00 5.14
1871 2251 0.036306 GAGGCCTTTTTCTGTCGGGA 59.964 55.000 6.77 0.00 0.00 5.14
1872 2252 0.250770 AGGCCTTTTTCTGTCGGGAC 60.251 55.000 0.00 0.00 0.00 4.46
1873 2253 0.536460 GGCCTTTTTCTGTCGGGACA 60.536 55.000 0.00 1.05 39.32 4.02
1874 2254 0.591659 GCCTTTTTCTGTCGGGACAC 59.408 55.000 0.00 0.00 36.21 3.67
1875 2255 1.961793 CCTTTTTCTGTCGGGACACA 58.038 50.000 0.00 0.00 36.21 3.72
1876 2256 2.294074 CCTTTTTCTGTCGGGACACAA 58.706 47.619 0.00 0.00 36.21 3.33
1877 2257 2.032924 CCTTTTTCTGTCGGGACACAAC 59.967 50.000 0.00 0.00 36.21 3.32
1878 2258 2.702592 TTTTCTGTCGGGACACAACT 57.297 45.000 0.00 0.00 36.21 3.16
1879 2259 2.234300 TTTCTGTCGGGACACAACTC 57.766 50.000 0.00 0.00 36.21 3.01
1880 2260 0.391597 TTCTGTCGGGACACAACTCC 59.608 55.000 0.00 0.00 36.21 3.85
1881 2261 0.469331 TCTGTCGGGACACAACTCCT 60.469 55.000 0.00 0.00 36.21 3.69
1882 2262 0.319900 CTGTCGGGACACAACTCCTG 60.320 60.000 0.00 0.00 37.99 3.86
1883 2263 1.004918 GTCGGGACACAACTCCTGG 60.005 63.158 0.00 0.00 37.31 4.45
1884 2264 2.358737 CGGGACACAACTCCTGGC 60.359 66.667 0.00 0.00 33.46 4.85
1885 2265 2.034221 GGGACACAACTCCTGGCC 59.966 66.667 0.00 0.00 0.00 5.36
1886 2266 2.034221 GGACACAACTCCTGGCCC 59.966 66.667 0.00 0.00 0.00 5.80
1887 2267 2.829384 GGACACAACTCCTGGCCCA 61.829 63.158 0.00 0.00 0.00 5.36
1888 2268 1.150536 GACACAACTCCTGGCCCAA 59.849 57.895 0.00 0.00 0.00 4.12
1889 2269 0.467290 GACACAACTCCTGGCCCAAA 60.467 55.000 0.00 0.00 0.00 3.28
1890 2270 0.032615 ACACAACTCCTGGCCCAAAA 60.033 50.000 0.00 0.00 0.00 2.44
1891 2271 0.389025 CACAACTCCTGGCCCAAAAC 59.611 55.000 0.00 0.00 0.00 2.43
1892 2272 0.032615 ACAACTCCTGGCCCAAAACA 60.033 50.000 0.00 0.00 0.00 2.83
1893 2273 1.118838 CAACTCCTGGCCCAAAACAA 58.881 50.000 0.00 0.00 0.00 2.83
1894 2274 1.693606 CAACTCCTGGCCCAAAACAAT 59.306 47.619 0.00 0.00 0.00 2.71
1895 2275 1.632589 ACTCCTGGCCCAAAACAATC 58.367 50.000 0.00 0.00 0.00 2.67
1896 2276 0.897621 CTCCTGGCCCAAAACAATCC 59.102 55.000 0.00 0.00 0.00 3.01
1897 2277 0.189574 TCCTGGCCCAAAACAATCCA 59.810 50.000 0.00 0.00 0.00 3.41
1898 2278 0.609662 CCTGGCCCAAAACAATCCAG 59.390 55.000 0.00 0.00 42.87 3.86
1899 2279 1.341080 CTGGCCCAAAACAATCCAGT 58.659 50.000 0.00 0.00 39.45 4.00
1900 2280 1.693606 CTGGCCCAAAACAATCCAGTT 59.306 47.619 0.00 0.00 39.45 3.16
1901 2281 2.104622 CTGGCCCAAAACAATCCAGTTT 59.895 45.455 0.00 0.00 43.13 2.66
1902 2282 2.103941 TGGCCCAAAACAATCCAGTTTC 59.896 45.455 0.00 0.00 40.60 2.78
1903 2283 2.368548 GGCCCAAAACAATCCAGTTTCT 59.631 45.455 0.00 0.00 40.60 2.52
1904 2284 3.554960 GGCCCAAAACAATCCAGTTTCTC 60.555 47.826 0.00 0.00 40.60 2.87
1905 2285 3.321968 GCCCAAAACAATCCAGTTTCTCT 59.678 43.478 0.00 0.00 40.60 3.10
1906 2286 4.522789 GCCCAAAACAATCCAGTTTCTCTA 59.477 41.667 0.00 0.00 40.60 2.43
1907 2287 5.335976 GCCCAAAACAATCCAGTTTCTCTAG 60.336 44.000 0.00 0.00 40.60 2.43
1908 2288 6.003950 CCCAAAACAATCCAGTTTCTCTAGA 58.996 40.000 0.00 0.00 40.60 2.43
1909 2289 6.490040 CCCAAAACAATCCAGTTTCTCTAGAA 59.510 38.462 0.00 0.00 40.60 2.10
1910 2290 7.014230 CCCAAAACAATCCAGTTTCTCTAGAAA 59.986 37.037 1.00 1.00 40.60 2.52
1911 2291 8.413229 CCAAAACAATCCAGTTTCTCTAGAAAA 58.587 33.333 6.72 0.00 44.58 2.29
1912 2292 9.971922 CAAAACAATCCAGTTTCTCTAGAAAAT 57.028 29.630 6.72 3.26 44.58 1.82
1966 2346 9.541143 AACAGAAAACTAACATTTTATTGTGGG 57.459 29.630 0.00 0.00 33.34 4.61
1967 2347 8.147704 ACAGAAAACTAACATTTTATTGTGGGG 58.852 33.333 0.00 0.00 32.52 4.96
1968 2348 8.364142 CAGAAAACTAACATTTTATTGTGGGGA 58.636 33.333 0.00 0.00 31.90 4.81
1969 2349 8.929487 AGAAAACTAACATTTTATTGTGGGGAA 58.071 29.630 0.00 0.00 31.90 3.97
1970 2350 9.549078 GAAAACTAACATTTTATTGTGGGGAAA 57.451 29.630 0.00 0.00 31.90 3.13
1974 2354 9.762381 ACTAACATTTTATTGTGGGGAAATAGA 57.238 29.630 0.00 0.00 0.00 1.98
1977 2357 8.429237 ACATTTTATTGTGGGGAAATAGAACA 57.571 30.769 0.00 0.00 0.00 3.18
1978 2358 8.311109 ACATTTTATTGTGGGGAAATAGAACAC 58.689 33.333 0.00 0.00 0.00 3.32
1979 2359 8.531146 CATTTTATTGTGGGGAAATAGAACACT 58.469 33.333 0.00 0.00 33.44 3.55
1980 2360 7.696992 TTTATTGTGGGGAAATAGAACACTC 57.303 36.000 0.00 0.00 33.44 3.51
1981 2361 4.715534 TTGTGGGGAAATAGAACACTCA 57.284 40.909 0.00 0.00 33.44 3.41
1982 2362 4.015872 TGTGGGGAAATAGAACACTCAC 57.984 45.455 0.00 0.00 33.44 3.51
1983 2363 3.392947 TGTGGGGAAATAGAACACTCACA 59.607 43.478 0.00 0.00 33.44 3.58
1984 2364 4.042809 TGTGGGGAAATAGAACACTCACAT 59.957 41.667 0.00 0.00 33.44 3.21
1985 2365 5.010282 GTGGGGAAATAGAACACTCACATT 58.990 41.667 0.00 0.00 0.00 2.71
1986 2366 5.009631 TGGGGAAATAGAACACTCACATTG 58.990 41.667 0.00 0.00 0.00 2.82
1987 2367 5.222027 TGGGGAAATAGAACACTCACATTGA 60.222 40.000 0.00 0.00 0.00 2.57
1988 2368 5.888161 GGGGAAATAGAACACTCACATTGAT 59.112 40.000 0.00 0.00 0.00 2.57
1989 2369 6.378280 GGGGAAATAGAACACTCACATTGATT 59.622 38.462 0.00 0.00 0.00 2.57
1990 2370 7.556275 GGGGAAATAGAACACTCACATTGATTA 59.444 37.037 0.00 0.00 0.00 1.75
1991 2371 8.398665 GGGAAATAGAACACTCACATTGATTAC 58.601 37.037 0.00 0.00 0.00 1.89
1992 2372 8.946085 GGAAATAGAACACTCACATTGATTACA 58.054 33.333 0.00 0.00 0.00 2.41
1997 2377 8.846943 AGAACACTCACATTGATTACATACAA 57.153 30.769 0.00 0.00 0.00 2.41
1998 2378 9.283768 AGAACACTCACATTGATTACATACAAA 57.716 29.630 0.00 0.00 0.00 2.83
1999 2379 9.891828 GAACACTCACATTGATTACATACAAAA 57.108 29.630 0.00 0.00 0.00 2.44
2026 2406 9.793259 AAATATCATGGTAATTTCCGTCATAGT 57.207 29.630 0.00 0.00 0.00 2.12
2029 2409 8.603242 ATCATGGTAATTTCCGTCATAGTAAC 57.397 34.615 0.00 0.00 0.00 2.50
2030 2410 7.557724 TCATGGTAATTTCCGTCATAGTAACA 58.442 34.615 0.00 0.00 0.00 2.41
2031 2411 8.041919 TCATGGTAATTTCCGTCATAGTAACAA 58.958 33.333 0.00 0.00 0.00 2.83
2032 2412 8.670135 CATGGTAATTTCCGTCATAGTAACAAA 58.330 33.333 0.00 0.00 0.00 2.83
2033 2413 8.618702 TGGTAATTTCCGTCATAGTAACAAAA 57.381 30.769 0.00 0.00 0.00 2.44
2034 2414 9.064706 TGGTAATTTCCGTCATAGTAACAAAAA 57.935 29.630 0.00 0.00 0.00 1.94
2059 2439 9.467258 AAATAAAAATATGTCATGGCAGAATCG 57.533 29.630 6.04 0.00 0.00 3.34
2060 2440 6.455360 AAAAATATGTCATGGCAGAATCGT 57.545 33.333 6.04 0.00 0.00 3.73
2061 2441 7.566760 AAAAATATGTCATGGCAGAATCGTA 57.433 32.000 6.04 0.00 0.00 3.43
2062 2442 6.791887 AAATATGTCATGGCAGAATCGTAG 57.208 37.500 6.04 0.00 0.00 3.51
2063 2443 3.827008 ATGTCATGGCAGAATCGTAGT 57.173 42.857 6.04 0.00 0.00 2.73
2064 2444 3.165058 TGTCATGGCAGAATCGTAGTC 57.835 47.619 0.00 0.00 0.00 2.59
2065 2445 2.495669 TGTCATGGCAGAATCGTAGTCA 59.504 45.455 0.00 0.00 0.00 3.41
2066 2446 3.056179 TGTCATGGCAGAATCGTAGTCAA 60.056 43.478 0.00 0.00 0.00 3.18
2067 2447 3.932710 GTCATGGCAGAATCGTAGTCAAA 59.067 43.478 0.00 0.00 0.00 2.69
2068 2448 4.033358 GTCATGGCAGAATCGTAGTCAAAG 59.967 45.833 0.00 0.00 0.00 2.77
2069 2449 3.678056 TGGCAGAATCGTAGTCAAAGT 57.322 42.857 0.00 0.00 0.00 2.66
2070 2450 4.794278 TGGCAGAATCGTAGTCAAAGTA 57.206 40.909 0.00 0.00 0.00 2.24
2071 2451 5.142061 TGGCAGAATCGTAGTCAAAGTAA 57.858 39.130 0.00 0.00 0.00 2.24
2072 2452 5.543714 TGGCAGAATCGTAGTCAAAGTAAA 58.456 37.500 0.00 0.00 0.00 2.01
2073 2453 5.992829 TGGCAGAATCGTAGTCAAAGTAAAA 59.007 36.000 0.00 0.00 0.00 1.52
2074 2454 6.653320 TGGCAGAATCGTAGTCAAAGTAAAAT 59.347 34.615 0.00 0.00 0.00 1.82
2075 2455 7.174253 TGGCAGAATCGTAGTCAAAGTAAAATT 59.826 33.333 0.00 0.00 0.00 1.82
2076 2456 8.021396 GGCAGAATCGTAGTCAAAGTAAAATTT 58.979 33.333 0.00 0.00 0.00 1.82
2077 2457 9.052080 GCAGAATCGTAGTCAAAGTAAAATTTC 57.948 33.333 0.00 0.00 0.00 2.17
2082 2462 8.231304 TCGTAGTCAAAGTAAAATTTCTACGG 57.769 34.615 21.56 10.63 44.87 4.02
2083 2463 6.952083 CGTAGTCAAAGTAAAATTTCTACGGC 59.048 38.462 17.40 0.38 42.74 5.68
2084 2464 6.870971 AGTCAAAGTAAAATTTCTACGGCA 57.129 33.333 0.00 0.00 0.00 5.69
2085 2465 7.266922 AGTCAAAGTAAAATTTCTACGGCAA 57.733 32.000 0.00 0.00 0.00 4.52
2086 2466 7.708998 AGTCAAAGTAAAATTTCTACGGCAAA 58.291 30.769 0.00 0.00 0.00 3.68
2087 2467 8.357402 AGTCAAAGTAAAATTTCTACGGCAAAT 58.643 29.630 0.00 0.00 0.00 2.32
2088 2468 8.974408 GTCAAAGTAAAATTTCTACGGCAAATT 58.026 29.630 0.00 0.00 35.40 1.82
2089 2469 9.187455 TCAAAGTAAAATTTCTACGGCAAATTC 57.813 29.630 0.00 0.00 33.24 2.17
2090 2470 8.973378 CAAAGTAAAATTTCTACGGCAAATTCA 58.027 29.630 0.00 0.00 33.24 2.57
2091 2471 9.705290 AAAGTAAAATTTCTACGGCAAATTCAT 57.295 25.926 0.00 0.00 33.24 2.57
2101 2481 9.729023 TTCTACGGCAAATTCATATTACAATTG 57.271 29.630 3.24 3.24 0.00 2.32
2102 2482 9.114952 TCTACGGCAAATTCATATTACAATTGA 57.885 29.630 13.59 0.00 0.00 2.57
2103 2483 9.729023 CTACGGCAAATTCATATTACAATTGAA 57.271 29.630 13.59 2.61 34.18 2.69
2104 2484 8.994429 ACGGCAAATTCATATTACAATTGAAA 57.006 26.923 13.59 0.00 33.45 2.69
2105 2485 9.598517 ACGGCAAATTCATATTACAATTGAAAT 57.401 25.926 13.59 0.00 33.45 2.17
2106 2486 9.852481 CGGCAAATTCATATTACAATTGAAATG 57.148 29.630 13.59 9.57 33.45 2.32
2107 2487 9.654417 GGCAAATTCATATTACAATTGAAATGC 57.346 29.630 13.59 9.04 41.08 3.56
2108 2488 9.654417 GCAAATTCATATTACAATTGAAATGCC 57.346 29.630 13.59 0.00 38.72 4.40
2112 2492 8.890124 TTCATATTACAATTGAAATGCCATGG 57.110 30.769 13.59 7.63 0.00 3.66
2113 2493 6.930164 TCATATTACAATTGAAATGCCATGGC 59.070 34.615 30.54 30.54 42.35 4.40
2126 2506 2.772287 GCCATGGCAGATTCCTAGTAC 58.228 52.381 32.08 0.00 41.49 2.73
2127 2507 2.104792 GCCATGGCAGATTCCTAGTACA 59.895 50.000 32.08 0.00 41.49 2.90
2128 2508 3.244700 GCCATGGCAGATTCCTAGTACAT 60.245 47.826 32.08 0.00 41.49 2.29
2129 2509 4.747931 GCCATGGCAGATTCCTAGTACATT 60.748 45.833 32.08 0.00 41.49 2.71
2130 2510 5.380043 CCATGGCAGATTCCTAGTACATTT 58.620 41.667 0.00 0.00 0.00 2.32
2131 2511 5.240183 CCATGGCAGATTCCTAGTACATTTG 59.760 44.000 0.00 0.00 0.00 2.32
2132 2512 4.780815 TGGCAGATTCCTAGTACATTTGG 58.219 43.478 0.00 0.00 0.00 3.28
2133 2513 3.565902 GGCAGATTCCTAGTACATTTGGC 59.434 47.826 0.00 0.00 0.00 4.52
2134 2514 4.199310 GCAGATTCCTAGTACATTTGGCA 58.801 43.478 0.00 0.00 0.00 4.92
2293 2682 8.614994 ATGCTACGTCATTAAAAGTAAAATGC 57.385 30.769 0.00 0.00 33.91 3.56
2296 2685 7.007995 GCTACGTCATTAAAAGTAAAATGCCAC 59.992 37.037 0.00 0.00 33.91 5.01
2320 2709 6.310467 ACGGCAAAAGAAAGAGAAAAAGTTTC 59.690 34.615 0.00 0.00 0.00 2.78
2347 2736 6.648725 GCCATGGCAAAAATGTAGAGTAAAAA 59.351 34.615 32.08 0.00 41.49 1.94
2385 2774 2.413837 CAGGGGTACACGACAAAGAAG 58.586 52.381 0.00 0.00 0.00 2.85
2399 2788 4.985538 ACAAAGAAGGCTTCCAACATCTA 58.014 39.130 23.09 0.00 31.82 1.98
2400 2789 4.762251 ACAAAGAAGGCTTCCAACATCTAC 59.238 41.667 23.09 0.00 31.82 2.59
2401 2790 4.917906 AAGAAGGCTTCCAACATCTACT 57.082 40.909 23.09 0.00 0.00 2.57
2402 2791 6.173339 CAAAGAAGGCTTCCAACATCTACTA 58.827 40.000 23.09 0.00 31.82 1.82
2403 2792 5.606348 AGAAGGCTTCCAACATCTACTAG 57.394 43.478 23.09 0.00 0.00 2.57
2404 2793 4.407296 AGAAGGCTTCCAACATCTACTAGG 59.593 45.833 23.09 0.00 0.00 3.02
2405 2794 3.041946 AGGCTTCCAACATCTACTAGGG 58.958 50.000 0.00 0.00 0.00 3.53
2406 2795 3.039011 GGCTTCCAACATCTACTAGGGA 58.961 50.000 0.00 0.00 0.00 4.20
2407 2796 3.070302 GGCTTCCAACATCTACTAGGGAG 59.930 52.174 0.00 0.00 0.00 4.30
2408 2797 3.493524 GCTTCCAACATCTACTAGGGAGC 60.494 52.174 0.00 0.00 43.22 4.70
2409 2798 2.679082 TCCAACATCTACTAGGGAGCC 58.321 52.381 0.00 0.00 0.00 4.70
2410 2799 1.341531 CCAACATCTACTAGGGAGCCG 59.658 57.143 0.00 0.00 0.00 5.52
2426 2815 0.388520 GCCGGCAAGACATGGAAAAC 60.389 55.000 24.80 0.00 0.00 2.43
2523 2913 9.566432 AAAATGGAATTAAACTTGCCATGTTAA 57.434 25.926 0.00 0.00 39.19 2.01
2583 2973 7.032580 TGCCGTGGAGAATATTGTAAAATTTG 58.967 34.615 0.00 0.00 0.00 2.32
2585 2975 6.475402 CCGTGGAGAATATTGTAAAATTTGCC 59.525 38.462 0.00 0.00 0.00 4.52
2586 2976 7.032580 CGTGGAGAATATTGTAAAATTTGCCA 58.967 34.615 0.00 0.00 0.00 4.92
2587 2977 7.706179 CGTGGAGAATATTGTAAAATTTGCCAT 59.294 33.333 0.00 0.00 0.00 4.40
2588 2978 8.819974 GTGGAGAATATTGTAAAATTTGCCATG 58.180 33.333 0.00 0.00 0.00 3.66
2589 2979 7.495279 TGGAGAATATTGTAAAATTTGCCATGC 59.505 33.333 0.00 0.00 0.00 4.06
2590 2980 7.041848 GGAGAATATTGTAAAATTTGCCATGCC 60.042 37.037 0.00 0.00 0.00 4.40
2591 2981 7.337167 AGAATATTGTAAAATTTGCCATGCCA 58.663 30.769 0.00 0.00 0.00 4.92
2592 2982 7.828223 AGAATATTGTAAAATTTGCCATGCCAA 59.172 29.630 0.00 0.00 0.00 4.52
2593 2983 7.934855 ATATTGTAAAATTTGCCATGCCAAA 57.065 28.000 4.08 4.08 38.87 3.28
2594 2984 6.645790 ATTGTAAAATTTGCCATGCCAAAA 57.354 29.167 5.88 0.00 38.12 2.44
2595 2985 5.686159 TGTAAAATTTGCCATGCCAAAAG 57.314 34.783 5.88 0.00 38.12 2.27
2596 2986 5.128919 TGTAAAATTTGCCATGCCAAAAGT 58.871 33.333 5.88 0.00 38.12 2.66
2597 2987 6.291377 TGTAAAATTTGCCATGCCAAAAGTA 58.709 32.000 5.88 0.00 38.12 2.24
2598 2988 6.767902 TGTAAAATTTGCCATGCCAAAAGTAA 59.232 30.769 5.88 0.00 38.12 2.24
2599 2989 6.705863 AAAATTTGCCATGCCAAAAGTAAA 57.294 29.167 5.88 0.00 38.12 2.01
2600 2990 6.705863 AAATTTGCCATGCCAAAAGTAAAA 57.294 29.167 5.88 0.00 38.12 1.52
2601 2991 6.897706 AATTTGCCATGCCAAAAGTAAAAT 57.102 29.167 5.88 0.00 38.12 1.82
2602 2992 6.897706 ATTTGCCATGCCAAAAGTAAAATT 57.102 29.167 5.88 0.00 38.12 1.82
2603 2993 5.686159 TTGCCATGCCAAAAGTAAAATTG 57.314 34.783 0.00 0.00 0.00 2.32
2604 2994 3.501445 TGCCATGCCAAAAGTAAAATTGC 59.499 39.130 0.00 0.00 0.00 3.56
2605 2995 3.424697 GCCATGCCAAAAGTAAAATTGCG 60.425 43.478 0.00 0.00 0.00 4.85
2606 2996 3.993081 CCATGCCAAAAGTAAAATTGCGA 59.007 39.130 0.00 0.00 0.00 5.10
2607 2997 4.630940 CCATGCCAAAAGTAAAATTGCGAT 59.369 37.500 0.00 0.00 0.00 4.58
2608 2998 5.809562 CCATGCCAAAAGTAAAATTGCGATA 59.190 36.000 0.00 0.00 0.00 2.92
2609 2999 6.019640 CCATGCCAAAAGTAAAATTGCGATAG 60.020 38.462 0.00 0.00 0.00 2.08
2641 3031 8.441312 AGCATAGAAAATTAAATTTGCCATGG 57.559 30.769 7.63 7.63 31.77 3.66
2642 3032 7.012610 AGCATAGAAAATTAAATTTGCCATGGC 59.987 33.333 30.54 30.54 42.35 4.40
2643 3033 5.799681 AGAAAATTAAATTTGCCATGGCG 57.200 34.783 30.87 0.00 45.51 5.69
2644 3034 5.486526 AGAAAATTAAATTTGCCATGGCGA 58.513 33.333 30.87 27.42 45.51 5.54
2645 3035 5.581874 AGAAAATTAAATTTGCCATGGCGAG 59.418 36.000 30.87 0.00 45.51 5.03
2646 3036 4.734398 AATTAAATTTGCCATGGCGAGA 57.266 36.364 30.87 19.35 45.51 4.04
2647 3037 3.781079 TTAAATTTGCCATGGCGAGAG 57.219 42.857 30.87 0.00 45.51 3.20
2648 3038 1.549203 AAATTTGCCATGGCGAGAGT 58.451 45.000 30.87 15.78 45.51 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.038343 CCCTCCAAATGTTGTTGCGG 60.038 55.000 0.00 0.00 0.00 5.69
1 2 0.038343 CCCCTCCAAATGTTGTTGCG 60.038 55.000 0.00 0.00 0.00 4.85
2 3 0.320683 GCCCCTCCAAATGTTGTTGC 60.321 55.000 0.00 0.00 0.00 4.17
3 4 1.047002 TGCCCCTCCAAATGTTGTTG 58.953 50.000 0.00 0.00 0.00 3.33
4 5 1.416030 GTTGCCCCTCCAAATGTTGTT 59.584 47.619 0.00 0.00 0.00 2.83
5 6 1.047801 GTTGCCCCTCCAAATGTTGT 58.952 50.000 0.00 0.00 0.00 3.32
6 7 0.321346 GGTTGCCCCTCCAAATGTTG 59.679 55.000 0.00 0.00 0.00 3.33
7 8 0.105246 TGGTTGCCCCTCCAAATGTT 60.105 50.000 0.00 0.00 0.00 2.71
8 9 0.831711 GTGGTTGCCCCTCCAAATGT 60.832 55.000 0.00 0.00 35.38 2.71
9 10 1.543944 GGTGGTTGCCCCTCCAAATG 61.544 60.000 5.90 0.00 44.87 2.32
11 12 2.200092 GGTGGTTGCCCCTCCAAA 59.800 61.111 5.90 0.00 44.87 3.28
14 15 3.868200 CTGTGGTGGTTGCCCCTCC 62.868 68.421 4.15 4.15 45.59 4.30
43 44 3.991725 CTCTTGCTCTGCAGCCCCC 62.992 68.421 9.47 0.00 46.26 5.40
91 92 2.029838 ATCAATGGTCTCCGCTTGAC 57.970 50.000 5.99 0.00 33.04 3.18
116 119 4.120331 GTTGATGTGGGCGCCTGC 62.120 66.667 28.56 19.48 41.71 4.85
118 121 1.973281 CAAGTTGATGTGGGCGCCT 60.973 57.895 28.56 5.85 0.00 5.52
132 135 1.271597 GGCCTGTCCATTGTCTCAAGT 60.272 52.381 0.00 0.00 34.01 3.16
154 157 3.330720 CTCCTCCCACCCACCCAC 61.331 72.222 0.00 0.00 0.00 4.61
162 165 2.610859 TCCTTGGCCTCCTCCCAC 60.611 66.667 3.32 0.00 30.65 4.61
193 196 1.274447 ACCGTCCTAGCTGGTGTTAAC 59.726 52.381 0.00 0.00 33.91 2.01
209 212 1.561769 TTCCTGGATGATGCCACCGT 61.562 55.000 0.00 0.00 33.52 4.83
216 219 1.242076 GCCGGATTTCCTGGATGATG 58.758 55.000 5.05 0.00 33.48 3.07
217 220 0.250467 CGCCGGATTTCCTGGATGAT 60.250 55.000 5.05 0.00 33.48 2.45
299 303 4.271291 CGATAGAGACGTCAGATCTGTGAA 59.729 45.833 21.92 0.10 39.76 3.18
313 317 2.481185 GGACTCATCCGTCGATAGAGAC 59.519 54.545 12.55 7.76 40.24 3.36
336 340 0.966179 TCGAGCTTAGCTGGTTGACA 59.034 50.000 13.01 0.00 39.88 3.58
348 352 2.840102 CCCGGATCCCTCGAGCTT 60.840 66.667 6.99 0.00 0.00 3.74
351 355 4.220163 TCCCCCGGATCCCTCGAG 62.220 72.222 0.73 5.13 0.00 4.04
352 356 4.220163 CTCCCCCGGATCCCTCGA 62.220 72.222 0.73 0.00 0.00 4.04
354 358 4.964241 CCCTCCCCCGGATCCCTC 62.964 77.778 0.73 0.00 0.00 4.30
367 385 3.798511 CCCTTCTTCCCGCCCCTC 61.799 72.222 0.00 0.00 0.00 4.30
430 448 2.284921 CCTCTCCTGGAGTGGCCA 60.285 66.667 26.80 0.00 46.96 5.36
431 449 2.039624 TCCTCTCCTGGAGTGGCC 59.960 66.667 31.02 0.00 41.47 5.36
432 450 3.627690 CTCCTCTCCTGGAGTGGC 58.372 66.667 31.02 0.00 46.33 5.01
442 460 2.439104 ATTCAGGCCCGCTCCTCTC 61.439 63.158 0.00 0.00 33.25 3.20
443 461 2.366167 ATTCAGGCCCGCTCCTCT 60.366 61.111 0.00 0.00 33.25 3.69
444 462 2.203126 CATTCAGGCCCGCTCCTC 60.203 66.667 0.00 0.00 33.25 3.71
445 463 3.801997 CCATTCAGGCCCGCTCCT 61.802 66.667 0.00 0.00 36.78 3.69
454 472 0.962356 AGCTTGAACGGCCATTCAGG 60.962 55.000 18.38 18.38 39.68 3.86
463 481 2.328099 GCCACCTCAGCTTGAACGG 61.328 63.158 0.00 0.00 0.00 4.44
464 482 1.165907 TTGCCACCTCAGCTTGAACG 61.166 55.000 0.00 0.00 0.00 3.95
467 485 2.877097 TATTTGCCACCTCAGCTTGA 57.123 45.000 0.00 0.00 0.00 3.02
469 487 3.026694 GGATTATTTGCCACCTCAGCTT 58.973 45.455 0.00 0.00 0.00 3.74
470 488 2.243221 AGGATTATTTGCCACCTCAGCT 59.757 45.455 0.00 0.00 0.00 4.24
558 576 3.317430 GGAGCTCTGCCATCCATTAAAAG 59.683 47.826 14.64 0.00 33.08 2.27
569 587 2.715046 CAAAATGTAGGAGCTCTGCCA 58.285 47.619 14.64 7.88 0.00 4.92
602 620 7.876936 ATCATGTGAATTGTCTAGAATGCTT 57.123 32.000 0.00 0.00 0.00 3.91
636 654 7.307694 CAACATCATGTAGTTGTTGCAGTAAT 58.692 34.615 18.48 0.00 45.58 1.89
690 708 7.349598 AGGAAGAGCCAATTTTGTATCATAGT 58.650 34.615 0.00 0.00 40.02 2.12
694 712 4.635765 CGAGGAAGAGCCAATTTTGTATCA 59.364 41.667 0.00 0.00 40.02 2.15
708 726 1.403814 TATGACTGGGCGAGGAAGAG 58.596 55.000 0.51 0.00 0.00 2.85
713 731 1.200252 CTACGATATGACTGGGCGAGG 59.800 57.143 0.51 0.00 0.00 4.63
722 740 5.859521 ATCGTGAGGTACTACGATATGAC 57.140 43.478 22.35 0.99 45.57 3.06
801 825 4.079253 AGACGATGGCACCAATTTTTAGT 58.921 39.130 0.00 0.00 0.00 2.24
802 826 4.396166 AGAGACGATGGCACCAATTTTTAG 59.604 41.667 0.00 0.00 0.00 1.85
803 827 4.331968 AGAGACGATGGCACCAATTTTTA 58.668 39.130 0.00 0.00 0.00 1.52
804 828 3.157087 AGAGACGATGGCACCAATTTTT 58.843 40.909 0.00 0.00 0.00 1.94
805 829 2.795329 AGAGACGATGGCACCAATTTT 58.205 42.857 0.00 0.00 0.00 1.82
807 831 2.906354 GTAGAGACGATGGCACCAATT 58.094 47.619 0.00 0.00 0.00 2.32
808 832 2.604046 GTAGAGACGATGGCACCAAT 57.396 50.000 0.00 0.00 0.00 3.16
859 883 5.642919 TGTCTTTAATGTTACGGCGGTAATT 59.357 36.000 18.43 12.58 40.53 1.40
868 892 8.120465 GGATTACATGGTGTCTTTAATGTTACG 58.880 37.037 0.00 0.00 35.07 3.18
876 900 7.825331 TTGTTTGGATTACATGGTGTCTTTA 57.175 32.000 0.00 0.00 0.00 1.85
878 902 6.323739 AGTTTGTTTGGATTACATGGTGTCTT 59.676 34.615 0.00 0.00 0.00 3.01
879 903 5.833131 AGTTTGTTTGGATTACATGGTGTCT 59.167 36.000 0.00 0.00 0.00 3.41
905 929 5.994668 GGGGAACTCAATTGTAGAGATGATC 59.005 44.000 5.13 0.00 36.91 2.92
907 931 5.032846 AGGGGAACTCAATTGTAGAGATGA 58.967 41.667 5.13 0.00 36.91 2.92
921 945 0.460459 GCTGCGTTAGAGGGGAACTC 60.460 60.000 0.00 0.00 46.98 3.01
1036 1081 4.648626 GCTGCTGTGGCCTGTGGA 62.649 66.667 3.32 0.00 37.74 4.02
1113 1177 1.165907 CCATGGCGCATAACGTGGAT 61.166 55.000 15.22 0.00 44.69 3.41
1129 1208 2.669569 GTCGTGGTGCTGTGCCAT 60.670 61.111 0.00 0.00 38.40 4.40
1161 1243 0.035439 ACCCATTCCACGTCATGACC 60.035 55.000 20.03 2.90 0.00 4.02
1356 1438 2.270205 CCCTGCTTGGAGTCGCAT 59.730 61.111 0.00 0.00 38.35 4.73
1386 1468 0.750546 CGAGGGAGGTGACCACGATA 60.751 60.000 3.63 0.00 34.98 2.92
1491 1585 1.374758 GAGACTGCTCAACGGTGGG 60.375 63.158 0.00 0.00 40.96 4.61
1557 1651 3.116300 CCTTGACTCCATCGATAACACG 58.884 50.000 0.00 0.00 0.00 4.49
1569 1663 2.808543 CAGTAACACTTGCCTTGACTCC 59.191 50.000 0.00 0.00 0.00 3.85
1581 1675 4.317671 ACTTAGCAACGACAGTAACACT 57.682 40.909 0.00 0.00 0.00 3.55
1586 1680 6.025896 CGAGAATTACTTAGCAACGACAGTA 58.974 40.000 0.00 0.00 0.00 2.74
1625 1848 0.226734 CTACGTACTCGAGCTCGACG 59.773 60.000 33.64 33.64 44.22 5.12
1680 1903 7.881232 ACGAGACTTTGTTAATTCCCATCTAAA 59.119 33.333 0.00 0.00 0.00 1.85
1688 1915 5.927115 AGTCAGACGAGACTTTGTTAATTCC 59.073 40.000 0.00 0.00 46.26 3.01
1704 1931 3.831715 TCACAGTGTATGAGTCAGACG 57.168 47.619 12.96 1.98 0.00 4.18
1709 1936 4.871513 TCAGTGTTCACAGTGTATGAGTC 58.128 43.478 13.32 0.00 45.17 3.36
1717 1944 3.062639 GGCGAATATCAGTGTTCACAGTG 59.937 47.826 8.28 8.28 46.05 3.66
1752 2132 2.048597 TGCGATCGTGCCGAACTT 60.049 55.556 17.81 0.00 39.99 2.66
1784 2164 1.069227 AGCTCGTGCCGAACATTTTTC 60.069 47.619 5.73 0.00 40.80 2.29
1799 2179 2.409651 GGTAGAGACGGCAGCTCG 59.590 66.667 0.00 0.00 37.46 5.03
1800 2180 1.654954 TTCGGTAGAGACGGCAGCTC 61.655 60.000 0.00 1.27 0.00 4.09
1801 2181 1.677966 TTCGGTAGAGACGGCAGCT 60.678 57.895 0.00 0.00 0.00 4.24
1802 2182 1.516603 GTTCGGTAGAGACGGCAGC 60.517 63.158 0.00 0.00 0.00 5.25
1803 2183 1.226323 CGTTCGGTAGAGACGGCAG 60.226 63.158 0.00 0.00 0.00 4.85
1804 2184 1.672030 TCGTTCGGTAGAGACGGCA 60.672 57.895 0.00 0.00 0.00 5.69
1805 2185 1.226239 GTCGTTCGGTAGAGACGGC 60.226 63.158 0.00 0.00 0.00 5.68
1806 2186 1.300971 TGGTCGTTCGGTAGAGACGG 61.301 60.000 0.00 0.00 34.68 4.79
1807 2187 0.731417 ATGGTCGTTCGGTAGAGACG 59.269 55.000 0.00 0.00 34.68 4.18
1808 2188 1.798079 GCATGGTCGTTCGGTAGAGAC 60.798 57.143 0.00 0.00 0.00 3.36
1809 2189 0.454600 GCATGGTCGTTCGGTAGAGA 59.545 55.000 0.00 0.00 0.00 3.10
1810 2190 0.866061 CGCATGGTCGTTCGGTAGAG 60.866 60.000 0.00 0.00 0.00 2.43
1811 2191 1.138036 CGCATGGTCGTTCGGTAGA 59.862 57.895 0.00 0.00 0.00 2.59
1812 2192 2.514013 GCGCATGGTCGTTCGGTAG 61.514 63.158 0.30 0.00 0.00 3.18
1813 2193 2.507547 GCGCATGGTCGTTCGGTA 60.508 61.111 0.30 0.00 0.00 4.02
1814 2194 3.950794 ATGCGCATGGTCGTTCGGT 62.951 57.895 24.69 0.00 0.00 4.69
1815 2195 3.155470 GATGCGCATGGTCGTTCGG 62.155 63.158 30.76 0.00 0.00 4.30
1816 2196 2.321060 GATGCGCATGGTCGTTCG 59.679 61.111 30.76 0.00 0.00 3.95
1817 2197 2.321060 CGATGCGCATGGTCGTTC 59.679 61.111 30.76 11.58 0.00 3.95
1830 2210 3.197790 CACCCAGCCGAAGCGATG 61.198 66.667 0.00 0.00 46.67 3.84
1831 2211 4.473520 CCACCCAGCCGAAGCGAT 62.474 66.667 0.00 0.00 46.67 4.58
1849 2229 0.519077 CGACAGAAAAAGGCCTCAGC 59.481 55.000 5.23 0.00 38.76 4.26
1850 2230 1.160137 CCGACAGAAAAAGGCCTCAG 58.840 55.000 5.23 0.00 0.00 3.35
1851 2231 0.250727 CCCGACAGAAAAAGGCCTCA 60.251 55.000 5.23 0.00 0.00 3.86
1852 2232 0.036306 TCCCGACAGAAAAAGGCCTC 59.964 55.000 5.23 0.00 0.00 4.70
1853 2233 0.250770 GTCCCGACAGAAAAAGGCCT 60.251 55.000 0.00 0.00 0.00 5.19
1854 2234 0.536460 TGTCCCGACAGAAAAAGGCC 60.536 55.000 0.00 0.00 36.21 5.19
1855 2235 0.591659 GTGTCCCGACAGAAAAAGGC 59.408 55.000 0.00 0.00 42.74 4.35
1856 2236 1.961793 TGTGTCCCGACAGAAAAAGG 58.038 50.000 0.00 0.00 42.74 3.11
1857 2237 2.943033 AGTTGTGTCCCGACAGAAAAAG 59.057 45.455 8.80 0.00 44.49 2.27
1858 2238 2.940410 GAGTTGTGTCCCGACAGAAAAA 59.060 45.455 8.80 0.00 44.49 1.94
1859 2239 2.557317 GAGTTGTGTCCCGACAGAAAA 58.443 47.619 8.80 0.00 44.49 2.29
1860 2240 1.202604 GGAGTTGTGTCCCGACAGAAA 60.203 52.381 8.80 0.00 44.49 2.52
1861 2241 0.391597 GGAGTTGTGTCCCGACAGAA 59.608 55.000 3.48 3.48 42.74 3.02
1862 2242 0.469331 AGGAGTTGTGTCCCGACAGA 60.469 55.000 0.00 0.00 42.74 3.41
1863 2243 0.319900 CAGGAGTTGTGTCCCGACAG 60.320 60.000 0.00 0.00 42.74 3.51
1864 2244 1.745890 CAGGAGTTGTGTCCCGACA 59.254 57.895 0.00 0.00 37.31 4.35
1865 2245 1.004918 CCAGGAGTTGTGTCCCGAC 60.005 63.158 0.00 0.00 37.31 4.79
1866 2246 2.879233 GCCAGGAGTTGTGTCCCGA 61.879 63.158 0.00 0.00 37.31 5.14
1867 2247 2.358737 GCCAGGAGTTGTGTCCCG 60.359 66.667 0.00 0.00 37.31 5.14
1868 2248 2.034221 GGCCAGGAGTTGTGTCCC 59.966 66.667 0.00 0.00 37.31 4.46
1869 2249 2.034221 GGGCCAGGAGTTGTGTCC 59.966 66.667 4.39 0.00 36.79 4.02
1870 2250 0.467290 TTTGGGCCAGGAGTTGTGTC 60.467 55.000 6.23 0.00 0.00 3.67
1871 2251 0.032615 TTTTGGGCCAGGAGTTGTGT 60.033 50.000 6.23 0.00 0.00 3.72
1872 2252 0.389025 GTTTTGGGCCAGGAGTTGTG 59.611 55.000 6.23 0.00 0.00 3.33
1873 2253 0.032615 TGTTTTGGGCCAGGAGTTGT 60.033 50.000 6.23 0.00 0.00 3.32
1874 2254 1.118838 TTGTTTTGGGCCAGGAGTTG 58.881 50.000 6.23 0.00 0.00 3.16
1875 2255 1.970640 GATTGTTTTGGGCCAGGAGTT 59.029 47.619 6.23 0.00 0.00 3.01
1876 2256 1.632589 GATTGTTTTGGGCCAGGAGT 58.367 50.000 6.23 0.00 0.00 3.85
1877 2257 0.897621 GGATTGTTTTGGGCCAGGAG 59.102 55.000 6.23 0.00 0.00 3.69
1878 2258 0.189574 TGGATTGTTTTGGGCCAGGA 59.810 50.000 6.23 0.00 0.00 3.86
1879 2259 0.609662 CTGGATTGTTTTGGGCCAGG 59.390 55.000 6.23 0.00 41.81 4.45
1881 2261 1.799933 AACTGGATTGTTTTGGGCCA 58.200 45.000 0.00 0.00 0.00 5.36
1882 2262 2.368548 AGAAACTGGATTGTTTTGGGCC 59.631 45.455 0.00 0.00 39.86 5.80
1883 2263 3.321968 AGAGAAACTGGATTGTTTTGGGC 59.678 43.478 0.00 0.00 39.86 5.36
1884 2264 6.003950 TCTAGAGAAACTGGATTGTTTTGGG 58.996 40.000 0.00 0.00 39.86 4.12
1885 2265 7.510549 TTCTAGAGAAACTGGATTGTTTTGG 57.489 36.000 0.00 0.00 39.86 3.28
1886 2266 9.971922 ATTTTCTAGAGAAACTGGATTGTTTTG 57.028 29.630 4.18 0.00 43.01 2.44
1940 2320 9.541143 CCCACAATAAAATGTTAGTTTTCTGTT 57.459 29.630 0.00 0.00 33.62 3.16
1941 2321 8.147704 CCCCACAATAAAATGTTAGTTTTCTGT 58.852 33.333 0.00 0.00 33.62 3.41
1942 2322 8.364142 TCCCCACAATAAAATGTTAGTTTTCTG 58.636 33.333 0.00 0.00 33.62 3.02
1943 2323 8.485578 TCCCCACAATAAAATGTTAGTTTTCT 57.514 30.769 0.00 0.00 33.62 2.52
1944 2324 9.549078 TTTCCCCACAATAAAATGTTAGTTTTC 57.451 29.630 0.00 0.00 33.62 2.29
1948 2328 9.762381 TCTATTTCCCCACAATAAAATGTTAGT 57.238 29.630 0.00 0.00 0.00 2.24
1951 2331 8.875168 TGTTCTATTTCCCCACAATAAAATGTT 58.125 29.630 0.00 0.00 0.00 2.71
1952 2332 8.311109 GTGTTCTATTTCCCCACAATAAAATGT 58.689 33.333 0.00 0.00 0.00 2.71
1953 2333 8.531146 AGTGTTCTATTTCCCCACAATAAAATG 58.469 33.333 0.00 0.00 0.00 2.32
1954 2334 8.664669 AGTGTTCTATTTCCCCACAATAAAAT 57.335 30.769 0.00 0.00 0.00 1.82
1955 2335 7.726291 TGAGTGTTCTATTTCCCCACAATAAAA 59.274 33.333 0.00 0.00 0.00 1.52
1956 2336 7.175990 GTGAGTGTTCTATTTCCCCACAATAAA 59.824 37.037 0.00 0.00 0.00 1.40
1957 2337 6.657541 GTGAGTGTTCTATTTCCCCACAATAA 59.342 38.462 0.00 0.00 0.00 1.40
1958 2338 6.177610 GTGAGTGTTCTATTTCCCCACAATA 58.822 40.000 0.00 0.00 0.00 1.90
1959 2339 5.010282 GTGAGTGTTCTATTTCCCCACAAT 58.990 41.667 0.00 0.00 0.00 2.71
1960 2340 4.141367 TGTGAGTGTTCTATTTCCCCACAA 60.141 41.667 0.00 0.00 0.00 3.33
1961 2341 3.392947 TGTGAGTGTTCTATTTCCCCACA 59.607 43.478 0.00 0.00 0.00 4.17
1962 2342 4.015872 TGTGAGTGTTCTATTTCCCCAC 57.984 45.455 0.00 0.00 0.00 4.61
1963 2343 4.927267 ATGTGAGTGTTCTATTTCCCCA 57.073 40.909 0.00 0.00 0.00 4.96
1964 2344 5.253330 TCAATGTGAGTGTTCTATTTCCCC 58.747 41.667 0.00 0.00 0.00 4.81
1965 2345 7.396540 AATCAATGTGAGTGTTCTATTTCCC 57.603 36.000 0.00 0.00 0.00 3.97
1966 2346 8.946085 TGTAATCAATGTGAGTGTTCTATTTCC 58.054 33.333 0.00 0.00 0.00 3.13
1971 2351 9.936759 TTGTATGTAATCAATGTGAGTGTTCTA 57.063 29.630 0.00 0.00 0.00 2.10
1972 2352 8.846943 TTGTATGTAATCAATGTGAGTGTTCT 57.153 30.769 0.00 0.00 0.00 3.01
1973 2353 9.891828 TTTTGTATGTAATCAATGTGAGTGTTC 57.108 29.630 0.00 0.00 0.00 3.18
2000 2380 9.793259 ACTATGACGGAAATTACCATGATATTT 57.207 29.630 0.00 0.00 0.00 1.40
2003 2383 9.701098 GTTACTATGACGGAAATTACCATGATA 57.299 33.333 0.00 0.00 0.00 2.15
2004 2384 8.208224 TGTTACTATGACGGAAATTACCATGAT 58.792 33.333 0.00 0.00 0.00 2.45
2005 2385 7.557724 TGTTACTATGACGGAAATTACCATGA 58.442 34.615 0.00 0.00 0.00 3.07
2006 2386 7.780008 TGTTACTATGACGGAAATTACCATG 57.220 36.000 0.00 0.00 0.00 3.66
2007 2387 8.795842 TTTGTTACTATGACGGAAATTACCAT 57.204 30.769 0.00 0.00 0.00 3.55
2008 2388 8.618702 TTTTGTTACTATGACGGAAATTACCA 57.381 30.769 0.00 0.00 0.00 3.25
2033 2413 9.467258 CGATTCTGCCATGACATATTTTTATTT 57.533 29.630 0.00 0.00 0.00 1.40
2034 2414 8.632679 ACGATTCTGCCATGACATATTTTTATT 58.367 29.630 0.00 0.00 0.00 1.40
2035 2415 8.169977 ACGATTCTGCCATGACATATTTTTAT 57.830 30.769 0.00 0.00 0.00 1.40
2036 2416 7.566760 ACGATTCTGCCATGACATATTTTTA 57.433 32.000 0.00 0.00 0.00 1.52
2037 2417 6.455360 ACGATTCTGCCATGACATATTTTT 57.545 33.333 0.00 0.00 0.00 1.94
2038 2418 6.767902 ACTACGATTCTGCCATGACATATTTT 59.232 34.615 0.00 0.00 0.00 1.82
2039 2419 6.291377 ACTACGATTCTGCCATGACATATTT 58.709 36.000 0.00 0.00 0.00 1.40
2040 2420 5.858381 ACTACGATTCTGCCATGACATATT 58.142 37.500 0.00 0.00 0.00 1.28
2041 2421 5.011023 TGACTACGATTCTGCCATGACATAT 59.989 40.000 0.00 0.00 0.00 1.78
2042 2422 4.340950 TGACTACGATTCTGCCATGACATA 59.659 41.667 0.00 0.00 0.00 2.29
2043 2423 3.132824 TGACTACGATTCTGCCATGACAT 59.867 43.478 0.00 0.00 0.00 3.06
2044 2424 2.495669 TGACTACGATTCTGCCATGACA 59.504 45.455 0.00 0.00 0.00 3.58
2045 2425 3.165058 TGACTACGATTCTGCCATGAC 57.835 47.619 0.00 0.00 0.00 3.06
2046 2426 3.885724 TTGACTACGATTCTGCCATGA 57.114 42.857 0.00 0.00 0.00 3.07
2047 2427 3.935203 ACTTTGACTACGATTCTGCCATG 59.065 43.478 0.00 0.00 0.00 3.66
2048 2428 4.207891 ACTTTGACTACGATTCTGCCAT 57.792 40.909 0.00 0.00 0.00 4.40
2049 2429 3.678056 ACTTTGACTACGATTCTGCCA 57.322 42.857 0.00 0.00 0.00 4.92
2050 2430 6.476243 TTTTACTTTGACTACGATTCTGCC 57.524 37.500 0.00 0.00 0.00 4.85
2051 2431 8.950403 AAATTTTACTTTGACTACGATTCTGC 57.050 30.769 0.00 0.00 0.00 4.26
2058 2438 6.952083 GCCGTAGAAATTTTACTTTGACTACG 59.048 38.462 17.89 17.89 45.89 3.51
2059 2439 7.799784 TGCCGTAGAAATTTTACTTTGACTAC 58.200 34.615 0.00 0.00 0.00 2.73
2060 2440 7.966246 TGCCGTAGAAATTTTACTTTGACTA 57.034 32.000 0.00 0.00 0.00 2.59
2061 2441 6.870971 TGCCGTAGAAATTTTACTTTGACT 57.129 33.333 0.00 0.00 0.00 3.41
2062 2442 7.917720 TTTGCCGTAGAAATTTTACTTTGAC 57.082 32.000 0.00 0.00 0.00 3.18
2063 2443 9.187455 GAATTTGCCGTAGAAATTTTACTTTGA 57.813 29.630 0.00 0.00 34.00 2.69
2064 2444 8.973378 TGAATTTGCCGTAGAAATTTTACTTTG 58.027 29.630 0.00 0.00 34.00 2.77
2065 2445 9.705290 ATGAATTTGCCGTAGAAATTTTACTTT 57.295 25.926 0.00 0.00 34.00 2.66
2075 2455 9.729023 CAATTGTAATATGAATTTGCCGTAGAA 57.271 29.630 0.00 0.00 0.00 2.10
2076 2456 9.114952 TCAATTGTAATATGAATTTGCCGTAGA 57.885 29.630 5.13 0.00 0.00 2.59
2077 2457 9.729023 TTCAATTGTAATATGAATTTGCCGTAG 57.271 29.630 5.13 0.00 0.00 3.51
2079 2459 8.994429 TTTCAATTGTAATATGAATTTGCCGT 57.006 26.923 5.13 0.00 33.45 5.68
2080 2460 9.852481 CATTTCAATTGTAATATGAATTTGCCG 57.148 29.630 9.64 0.00 33.45 5.69
2081 2461 9.654417 GCATTTCAATTGTAATATGAATTTGCC 57.346 29.630 9.64 0.00 37.01 4.52
2082 2462 9.654417 GGCATTTCAATTGTAATATGAATTTGC 57.346 29.630 9.64 8.17 39.41 3.68
2086 2466 9.496873 CCATGGCATTTCAATTGTAATATGAAT 57.503 29.630 15.30 5.31 33.45 2.57
2087 2467 7.441760 GCCATGGCATTTCAATTGTAATATGAA 59.558 33.333 32.08 3.75 41.49 2.57
2088 2468 6.930164 GCCATGGCATTTCAATTGTAATATGA 59.070 34.615 32.08 3.76 41.49 2.15
2089 2469 7.124347 GCCATGGCATTTCAATTGTAATATG 57.876 36.000 32.08 9.89 41.49 1.78
2106 2486 2.104792 TGTACTAGGAATCTGCCATGGC 59.895 50.000 30.54 30.54 42.35 4.40
2107 2487 4.630644 ATGTACTAGGAATCTGCCATGG 57.369 45.455 7.63 7.63 0.00 3.66
2108 2488 5.240183 CCAAATGTACTAGGAATCTGCCATG 59.760 44.000 0.00 0.00 0.00 3.66
2109 2489 5.380043 CCAAATGTACTAGGAATCTGCCAT 58.620 41.667 0.00 0.00 0.00 4.40
2110 2490 4.780815 CCAAATGTACTAGGAATCTGCCA 58.219 43.478 0.00 0.00 0.00 4.92
2111 2491 3.565902 GCCAAATGTACTAGGAATCTGCC 59.434 47.826 0.00 0.00 0.00 4.85
2112 2492 4.199310 TGCCAAATGTACTAGGAATCTGC 58.801 43.478 0.00 0.00 0.00 4.26
2113 2493 5.824624 ACATGCCAAATGTACTAGGAATCTG 59.175 40.000 0.00 0.00 0.00 2.90
2114 2494 6.006275 ACATGCCAAATGTACTAGGAATCT 57.994 37.500 0.00 0.00 0.00 2.40
2115 2495 5.822519 TGACATGCCAAATGTACTAGGAATC 59.177 40.000 0.00 0.00 31.52 2.52
2116 2496 5.754782 TGACATGCCAAATGTACTAGGAAT 58.245 37.500 0.00 0.00 31.52 3.01
2117 2497 5.172687 TGACATGCCAAATGTACTAGGAA 57.827 39.130 0.00 0.00 31.52 3.36
2118 2498 4.835284 TGACATGCCAAATGTACTAGGA 57.165 40.909 0.00 0.00 31.52 2.94
2119 2499 5.185454 TCTTGACATGCCAAATGTACTAGG 58.815 41.667 0.00 0.00 31.52 3.02
2120 2500 6.741992 TTCTTGACATGCCAAATGTACTAG 57.258 37.500 0.00 0.00 31.52 2.57
2121 2501 7.309133 CCTTTTCTTGACATGCCAAATGTACTA 60.309 37.037 0.00 0.00 31.52 1.82
2122 2502 6.403866 TTTTCTTGACATGCCAAATGTACT 57.596 33.333 0.00 0.00 31.52 2.73
2123 2503 5.634859 CCTTTTCTTGACATGCCAAATGTAC 59.365 40.000 0.00 0.00 31.52 2.90
2124 2504 5.538053 TCCTTTTCTTGACATGCCAAATGTA 59.462 36.000 0.00 0.00 31.52 2.29
2125 2505 4.344679 TCCTTTTCTTGACATGCCAAATGT 59.655 37.500 0.00 0.00 34.52 2.71
2126 2506 4.885413 TCCTTTTCTTGACATGCCAAATG 58.115 39.130 0.00 0.00 0.00 2.32
2127 2507 5.246656 TCATCCTTTTCTTGACATGCCAAAT 59.753 36.000 0.00 0.00 0.00 2.32
2128 2508 4.588106 TCATCCTTTTCTTGACATGCCAAA 59.412 37.500 0.00 0.00 0.00 3.28
2129 2509 4.151121 TCATCCTTTTCTTGACATGCCAA 58.849 39.130 0.00 0.00 0.00 4.52
2130 2510 3.765381 TCATCCTTTTCTTGACATGCCA 58.235 40.909 0.00 0.00 0.00 4.92
2131 2511 4.789012 TTCATCCTTTTCTTGACATGCC 57.211 40.909 0.00 0.00 0.00 4.40
2132 2512 8.650714 GTTAAATTCATCCTTTTCTTGACATGC 58.349 33.333 0.00 0.00 0.00 4.06
2133 2513 9.695526 TGTTAAATTCATCCTTTTCTTGACATG 57.304 29.630 0.00 0.00 0.00 3.21
2206 2586 7.814107 CACTGCAAATTTACTTCCACATACATT 59.186 33.333 0.00 0.00 0.00 2.71
2211 2591 4.832266 TCCACTGCAAATTTACTTCCACAT 59.168 37.500 0.00 0.00 0.00 3.21
2216 2596 7.917505 CCATATTCTCCACTGCAAATTTACTTC 59.082 37.037 0.00 0.00 0.00 3.01
2274 2661 5.285134 CCGTGGCATTTTACTTTTAATGACG 59.715 40.000 0.00 0.00 41.65 4.35
2293 2682 3.708563 TTTCTCTTTCTTTTGCCGTGG 57.291 42.857 0.00 0.00 0.00 4.94
2296 2685 6.531594 AGAAACTTTTTCTCTTTCTTTTGCCG 59.468 34.615 0.00 0.00 31.52 5.69
2347 2736 1.348696 CTGGCTTTTCCCTGGCAAATT 59.651 47.619 0.00 0.00 38.26 1.82
2385 2774 3.039011 TCCCTAGTAGATGTTGGAAGCC 58.961 50.000 0.00 0.00 0.00 4.35
2399 2788 2.038975 TCTTGCCGGCTCCCTAGT 59.961 61.111 29.70 0.00 0.00 2.57
2400 2789 1.690219 ATGTCTTGCCGGCTCCCTAG 61.690 60.000 29.70 16.13 0.00 3.02
2401 2790 1.689233 ATGTCTTGCCGGCTCCCTA 60.689 57.895 29.70 11.90 0.00 3.53
2402 2791 3.011517 ATGTCTTGCCGGCTCCCT 61.012 61.111 29.70 4.38 0.00 4.20
2403 2792 2.825836 CATGTCTTGCCGGCTCCC 60.826 66.667 29.70 13.26 0.00 4.30
2404 2793 2.819984 TTCCATGTCTTGCCGGCTCC 62.820 60.000 29.70 12.89 0.00 4.70
2405 2794 0.960364 TTTCCATGTCTTGCCGGCTC 60.960 55.000 29.70 15.44 0.00 4.70
2406 2795 0.539438 TTTTCCATGTCTTGCCGGCT 60.539 50.000 29.70 1.94 0.00 5.52
2407 2796 0.388520 GTTTTCCATGTCTTGCCGGC 60.389 55.000 22.73 22.73 0.00 6.13
2408 2797 0.958091 TGTTTTCCATGTCTTGCCGG 59.042 50.000 0.00 0.00 0.00 6.13
2409 2798 2.034558 AGTTGTTTTCCATGTCTTGCCG 59.965 45.455 0.00 0.00 0.00 5.69
2410 2799 3.733443 AGTTGTTTTCCATGTCTTGCC 57.267 42.857 0.00 0.00 0.00 4.52
2426 2815 3.731089 ACCATGGCATCAACAAAAGTTG 58.269 40.909 13.04 2.09 35.78 3.16
2500 2890 9.566432 TTTTTAACATGGCAAGTTTAATTCCAT 57.434 25.926 13.77 0.00 37.99 3.41
2501 2891 8.964476 TTTTTAACATGGCAAGTTTAATTCCA 57.036 26.923 13.77 0.00 0.00 3.53
2520 2910 8.607459 CACACACATGCCAACTTTAATTTTTAA 58.393 29.630 0.00 0.00 0.00 1.52
2523 2913 6.344500 TCACACACATGCCAACTTTAATTTT 58.656 32.000 0.00 0.00 0.00 1.82
2561 2951 7.032580 TGGCAAATTTTACAATATTCTCCACG 58.967 34.615 0.00 0.00 0.00 4.94
2583 2973 3.424697 CGCAATTTTACTTTTGGCATGGC 60.425 43.478 13.29 13.29 0.00 4.40
2585 2975 5.783100 ATCGCAATTTTACTTTTGGCATG 57.217 34.783 0.00 0.00 0.00 4.06
2586 2976 5.519927 GCTATCGCAATTTTACTTTTGGCAT 59.480 36.000 0.00 0.00 35.78 4.40
2587 2977 4.862018 GCTATCGCAATTTTACTTTTGGCA 59.138 37.500 0.00 0.00 35.78 4.92
2588 2978 4.862018 TGCTATCGCAATTTTACTTTTGGC 59.138 37.500 0.00 0.00 44.62 4.52
2615 3005 8.895737 CCATGGCAAATTTAATTTTCTATGCTT 58.104 29.630 16.27 2.84 34.70 3.91
2616 3006 7.012610 GCCATGGCAAATTTAATTTTCTATGCT 59.987 33.333 32.08 0.00 34.70 3.79
2617 3007 7.134163 GCCATGGCAAATTTAATTTTCTATGC 58.866 34.615 32.08 10.44 34.70 3.14
2621 3011 5.486526 TCGCCATGGCAAATTTAATTTTCT 58.513 33.333 34.93 0.00 42.06 2.52
2627 3017 3.088532 ACTCTCGCCATGGCAAATTTAA 58.911 40.909 34.93 12.36 42.06 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.