Multiple sequence alignment - TraesCS6B01G121600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G121600 chr6B 100.000 2681 0 0 1 2681 116287384 116290064 0.000000e+00 4951.0
1 TraesCS6B01G121600 chr6B 95.545 1661 60 6 437 2085 116209636 116211294 0.000000e+00 2645.0
2 TraesCS6B01G121600 chr6B 90.271 627 27 16 2084 2681 116213195 116213816 0.000000e+00 789.0
3 TraesCS6B01G121600 chr6B 95.862 435 16 1 1 435 603774982 603774550 0.000000e+00 702.0
4 TraesCS6B01G121600 chr6B 77.195 934 134 47 765 1668 116119984 116120868 3.120000e-129 472.0
5 TraesCS6B01G121600 chr6B 82.759 232 32 8 952 1180 116125744 116125970 1.630000e-47 200.0
6 TraesCS6B01G121600 chr6B 95.000 60 3 0 1859 1918 116121063 116121122 7.900000e-16 95.3
7 TraesCS6B01G121600 chr6B 94.545 55 3 0 2072 2126 116136615 116136669 4.760000e-13 86.1
8 TraesCS6B01G121600 chr6A 92.289 843 51 10 881 1717 60583846 60584680 0.000000e+00 1184.0
9 TraesCS6B01G121600 chr6A 83.359 649 83 17 884 1526 60622867 60623496 6.440000e-161 577.0
10 TraesCS6B01G121600 chr6A 93.778 225 12 2 572 795 60583335 60583558 1.190000e-88 337.0
11 TraesCS6B01G121600 chr6A 84.753 223 13 9 2167 2370 60590514 60590734 1.260000e-48 204.0
12 TraesCS6B01G121600 chr6A 79.505 283 36 17 1884 2150 60590141 60590417 5.900000e-42 182.0
13 TraesCS6B01G121600 chr6D 88.854 942 76 17 813 1745 54829011 54828090 0.000000e+00 1131.0
14 TraesCS6B01G121600 chr6D 81.159 897 110 30 826 1706 54788748 54787895 0.000000e+00 665.0
15 TraesCS6B01G121600 chr6D 84.615 403 22 14 1756 2118 54828039 54827637 5.450000e-97 364.0
16 TraesCS6B01G121600 chr6D 85.068 221 14 11 2167 2370 54827523 54827305 9.730000e-50 207.0
17 TraesCS6B01G121600 chr4B 96.092 435 15 1 1 435 670396808 670396376 0.000000e+00 708.0
18 TraesCS6B01G121600 chr4B 90.741 54 2 3 2536 2589 667508227 667508177 4.790000e-08 69.4
19 TraesCS6B01G121600 chr5D 95.662 438 17 1 1 438 47518955 47518520 0.000000e+00 702.0
20 TraesCS6B01G121600 chr5D 95.642 436 17 1 1 436 88169696 88169263 0.000000e+00 699.0
21 TraesCS6B01G121600 chr1D 95.465 441 18 1 1 441 11500052 11499614 0.000000e+00 702.0
22 TraesCS6B01G121600 chr4A 95.632 435 17 1 1 435 624884167 624884599 0.000000e+00 697.0
23 TraesCS6B01G121600 chr2D 95.632 435 17 1 1 435 16055495 16055063 0.000000e+00 697.0
24 TraesCS6B01G121600 chr2A 95.632 435 15 2 1 435 680550514 680550084 0.000000e+00 695.0
25 TraesCS6B01G121600 chr2B 95.023 442 18 3 1 442 144032577 144033014 0.000000e+00 691.0
26 TraesCS6B01G121600 chr7A 96.970 33 1 0 2543 2575 17680568 17680600 3.730000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G121600 chr6B 116287384 116290064 2680 False 4951.000000 4951 100.0000 1 2681 1 chr6B.!!$F3 2680
1 TraesCS6B01G121600 chr6B 116209636 116213816 4180 False 1717.000000 2645 92.9080 437 2681 2 chr6B.!!$F5 2244
2 TraesCS6B01G121600 chr6B 116119984 116121122 1138 False 283.650000 472 86.0975 765 1918 2 chr6B.!!$F4 1153
3 TraesCS6B01G121600 chr6A 60583335 60584680 1345 False 760.500000 1184 93.0335 572 1717 2 chr6A.!!$F2 1145
4 TraesCS6B01G121600 chr6A 60622867 60623496 629 False 577.000000 577 83.3590 884 1526 1 chr6A.!!$F1 642
5 TraesCS6B01G121600 chr6D 54787895 54788748 853 True 665.000000 665 81.1590 826 1706 1 chr6D.!!$R1 880
6 TraesCS6B01G121600 chr6D 54827305 54829011 1706 True 567.333333 1131 86.1790 813 2370 3 chr6D.!!$R2 1557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.036010 AAGACCTGTGGAAGATGGCG 60.036 55.0 0.00 0.0 0.0 5.69 F
163 164 0.165944 GAGTGCGTTTGACCGGATTG 59.834 55.0 9.46 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 1590 1.129326 GTTTGACGAGTGAGTGACGG 58.871 55.0 0.0 0.0 0.00 4.79 R
2058 2493 1.518367 TCCCACCAGGAACAGAAAGT 58.482 50.0 0.0 0.0 43.78 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.969238 CGATGTGCGGAGATGGGC 60.969 66.667 0.00 0.00 36.03 5.36
25 26 2.507944 GATGTGCGGAGATGGGCT 59.492 61.111 0.00 0.00 0.00 5.19
26 27 1.596477 GATGTGCGGAGATGGGCTC 60.596 63.158 0.00 0.00 43.17 4.70
27 28 3.451556 ATGTGCGGAGATGGGCTCG 62.452 63.158 0.00 0.00 44.91 5.03
40 41 4.567385 GCTCGCGCAGGAGGAGAG 62.567 72.222 8.75 4.91 34.56 3.20
41 42 3.898509 CTCGCGCAGGAGGAGAGG 61.899 72.222 8.75 0.00 0.00 3.69
42 43 4.742649 TCGCGCAGGAGGAGAGGT 62.743 66.667 8.75 0.00 0.00 3.85
43 44 3.764466 CGCGCAGGAGGAGAGGTT 61.764 66.667 8.75 0.00 0.00 3.50
44 45 2.125350 GCGCAGGAGGAGAGGTTG 60.125 66.667 0.30 0.00 0.00 3.77
45 46 2.125350 CGCAGGAGGAGAGGTTGC 60.125 66.667 0.00 0.00 0.00 4.17
46 47 2.654079 CGCAGGAGGAGAGGTTGCT 61.654 63.158 0.00 0.00 32.80 3.91
47 48 1.078567 GCAGGAGGAGAGGTTGCTG 60.079 63.158 0.00 0.00 36.05 4.41
48 49 1.835927 GCAGGAGGAGAGGTTGCTGT 61.836 60.000 0.00 0.00 35.48 4.40
49 50 0.248843 CAGGAGGAGAGGTTGCTGTC 59.751 60.000 0.00 0.00 0.00 3.51
50 51 0.116143 AGGAGGAGAGGTTGCTGTCT 59.884 55.000 0.00 0.00 0.00 3.41
51 52 0.248843 GGAGGAGAGGTTGCTGTCTG 59.751 60.000 0.00 0.00 0.00 3.51
52 53 0.248843 GAGGAGAGGTTGCTGTCTGG 59.751 60.000 0.00 0.00 0.00 3.86
53 54 1.376553 GGAGAGGTTGCTGTCTGGC 60.377 63.158 0.00 0.00 0.00 4.85
54 55 1.739562 GAGAGGTTGCTGTCTGGCG 60.740 63.158 0.00 0.00 34.52 5.69
55 56 2.031163 GAGGTTGCTGTCTGGCGT 59.969 61.111 0.00 0.00 34.52 5.68
56 57 2.029844 GAGGTTGCTGTCTGGCGTC 61.030 63.158 0.00 0.00 34.52 5.19
57 58 2.280797 GGTTGCTGTCTGGCGTCA 60.281 61.111 0.00 0.00 34.52 4.35
58 59 1.672356 GGTTGCTGTCTGGCGTCAT 60.672 57.895 0.00 0.00 34.52 3.06
59 60 1.499056 GTTGCTGTCTGGCGTCATG 59.501 57.895 0.00 0.00 34.52 3.07
60 61 1.672030 TTGCTGTCTGGCGTCATGG 60.672 57.895 0.00 0.00 34.52 3.66
61 62 2.046892 GCTGTCTGGCGTCATGGT 60.047 61.111 0.00 0.00 0.00 3.55
62 63 2.393768 GCTGTCTGGCGTCATGGTG 61.394 63.158 0.00 0.00 0.00 4.17
63 64 1.293179 CTGTCTGGCGTCATGGTGA 59.707 57.895 0.00 0.00 0.00 4.02
64 65 1.005037 TGTCTGGCGTCATGGTGAC 60.005 57.895 0.00 0.00 43.65 3.67
72 73 2.665777 GTCATGGTGACGTCGATGG 58.334 57.895 11.62 0.00 37.67 3.51
73 74 1.153647 TCATGGTGACGTCGATGGC 60.154 57.895 11.62 6.55 0.00 4.40
74 75 1.153568 CATGGTGACGTCGATGGCT 60.154 57.895 12.67 0.00 0.00 4.75
75 76 1.153568 ATGGTGACGTCGATGGCTG 60.154 57.895 12.67 0.00 0.00 4.85
76 77 1.604147 ATGGTGACGTCGATGGCTGA 61.604 55.000 12.67 0.00 0.00 4.26
77 78 1.517257 GGTGACGTCGATGGCTGAG 60.517 63.158 12.67 0.00 0.00 3.35
78 79 1.213013 GTGACGTCGATGGCTGAGT 59.787 57.895 12.67 0.00 0.00 3.41
79 80 1.073216 GTGACGTCGATGGCTGAGTG 61.073 60.000 12.67 0.00 0.00 3.51
80 81 1.517257 GACGTCGATGGCTGAGTGG 60.517 63.158 9.90 0.00 0.00 4.00
81 82 2.887568 CGTCGATGGCTGAGTGGC 60.888 66.667 0.00 0.00 42.18 5.01
89 90 3.978272 GCTGAGTGGCCAGACAAG 58.022 61.111 5.11 2.54 36.29 3.16
90 91 1.673665 GCTGAGTGGCCAGACAAGG 60.674 63.158 5.11 0.00 36.29 3.61
91 92 1.757306 CTGAGTGGCCAGACAAGGT 59.243 57.895 5.11 0.00 36.29 3.50
92 93 0.976641 CTGAGTGGCCAGACAAGGTA 59.023 55.000 5.11 0.00 36.29 3.08
93 94 0.976641 TGAGTGGCCAGACAAGGTAG 59.023 55.000 5.11 0.00 0.00 3.18
94 95 1.267121 GAGTGGCCAGACAAGGTAGA 58.733 55.000 5.11 0.00 0.00 2.59
95 96 1.623811 GAGTGGCCAGACAAGGTAGAA 59.376 52.381 5.11 0.00 0.00 2.10
96 97 1.625818 AGTGGCCAGACAAGGTAGAAG 59.374 52.381 5.11 0.00 0.00 2.85
97 98 0.324943 TGGCCAGACAAGGTAGAAGC 59.675 55.000 0.00 0.00 0.00 3.86
98 99 0.393132 GGCCAGACAAGGTAGAAGCC 60.393 60.000 0.00 0.00 0.00 4.35
99 100 0.615850 GCCAGACAAGGTAGAAGCCT 59.384 55.000 0.00 0.00 41.41 4.58
100 101 1.406205 GCCAGACAAGGTAGAAGCCTC 60.406 57.143 0.00 0.00 38.03 4.70
101 102 1.902508 CCAGACAAGGTAGAAGCCTCA 59.097 52.381 0.00 0.00 38.03 3.86
102 103 2.303022 CCAGACAAGGTAGAAGCCTCAA 59.697 50.000 0.00 0.00 38.03 3.02
103 104 3.054802 CCAGACAAGGTAGAAGCCTCAAT 60.055 47.826 0.00 0.00 38.03 2.57
104 105 4.162320 CCAGACAAGGTAGAAGCCTCAATA 59.838 45.833 0.00 0.00 38.03 1.90
105 106 5.163258 CCAGACAAGGTAGAAGCCTCAATAT 60.163 44.000 0.00 0.00 38.03 1.28
106 107 5.757320 CAGACAAGGTAGAAGCCTCAATATG 59.243 44.000 0.00 0.00 38.03 1.78
107 108 5.663106 AGACAAGGTAGAAGCCTCAATATGA 59.337 40.000 0.00 0.00 38.03 2.15
108 109 6.328672 AGACAAGGTAGAAGCCTCAATATGAT 59.671 38.462 0.00 0.00 38.03 2.45
109 110 6.529220 ACAAGGTAGAAGCCTCAATATGATC 58.471 40.000 0.00 0.00 38.03 2.92
110 111 6.328672 ACAAGGTAGAAGCCTCAATATGATCT 59.671 38.462 0.00 0.00 38.03 2.75
111 112 6.357579 AGGTAGAAGCCTCAATATGATCTG 57.642 41.667 0.00 0.00 32.39 2.90
112 113 6.080682 AGGTAGAAGCCTCAATATGATCTGA 58.919 40.000 0.00 0.00 32.39 3.27
113 114 6.556495 AGGTAGAAGCCTCAATATGATCTGAA 59.444 38.462 0.00 0.00 32.39 3.02
114 115 6.873076 GGTAGAAGCCTCAATATGATCTGAAG 59.127 42.308 0.00 0.00 0.00 3.02
115 116 6.744175 AGAAGCCTCAATATGATCTGAAGA 57.256 37.500 0.00 0.00 0.00 2.87
116 117 6.523840 AGAAGCCTCAATATGATCTGAAGAC 58.476 40.000 0.00 0.00 0.00 3.01
117 118 5.226194 AGCCTCAATATGATCTGAAGACC 57.774 43.478 0.00 0.00 0.00 3.85
118 119 4.906664 AGCCTCAATATGATCTGAAGACCT 59.093 41.667 0.00 0.00 0.00 3.85
119 120 4.996122 GCCTCAATATGATCTGAAGACCTG 59.004 45.833 0.00 0.00 0.00 4.00
120 121 5.454471 GCCTCAATATGATCTGAAGACCTGT 60.454 44.000 0.00 0.00 0.00 4.00
121 122 5.990386 CCTCAATATGATCTGAAGACCTGTG 59.010 44.000 0.00 0.00 0.00 3.66
122 123 5.922053 TCAATATGATCTGAAGACCTGTGG 58.078 41.667 0.00 0.00 0.00 4.17
123 124 5.662657 TCAATATGATCTGAAGACCTGTGGA 59.337 40.000 0.00 0.00 0.00 4.02
124 125 6.156775 TCAATATGATCTGAAGACCTGTGGAA 59.843 38.462 0.00 0.00 0.00 3.53
125 126 3.969287 TGATCTGAAGACCTGTGGAAG 57.031 47.619 0.00 0.00 0.00 3.46
126 127 3.510459 TGATCTGAAGACCTGTGGAAGA 58.490 45.455 0.00 0.00 0.00 2.87
127 128 4.099633 TGATCTGAAGACCTGTGGAAGAT 58.900 43.478 0.00 0.00 0.00 2.40
128 129 3.969287 TCTGAAGACCTGTGGAAGATG 57.031 47.619 0.00 0.00 0.00 2.90
129 130 2.568956 TCTGAAGACCTGTGGAAGATGG 59.431 50.000 0.00 0.00 0.00 3.51
130 131 1.003580 TGAAGACCTGTGGAAGATGGC 59.996 52.381 0.00 0.00 0.00 4.40
131 132 0.036010 AAGACCTGTGGAAGATGGCG 60.036 55.000 0.00 0.00 0.00 5.69
132 133 1.450312 GACCTGTGGAAGATGGCGG 60.450 63.158 0.00 0.00 0.00 6.13
133 134 2.825836 CCTGTGGAAGATGGCGGC 60.826 66.667 0.00 0.00 0.00 6.53
134 135 3.197790 CTGTGGAAGATGGCGGCG 61.198 66.667 0.51 0.51 0.00 6.46
135 136 3.664025 CTGTGGAAGATGGCGGCGA 62.664 63.158 12.98 0.00 0.00 5.54
136 137 2.203070 GTGGAAGATGGCGGCGAT 60.203 61.111 12.98 0.00 0.00 4.58
137 138 2.203056 TGGAAGATGGCGGCGATG 60.203 61.111 12.98 0.00 0.00 3.84
138 139 2.108976 GGAAGATGGCGGCGATGA 59.891 61.111 12.98 0.00 0.00 2.92
139 140 2.247437 GGAAGATGGCGGCGATGAC 61.247 63.158 12.98 0.00 0.00 3.06
140 141 1.521457 GAAGATGGCGGCGATGACA 60.521 57.895 12.98 3.44 0.00 3.58
141 142 1.766143 GAAGATGGCGGCGATGACAC 61.766 60.000 12.98 0.00 0.00 3.67
142 143 2.511373 GATGGCGGCGATGACACA 60.511 61.111 12.98 0.00 0.00 3.72
143 144 2.813179 GATGGCGGCGATGACACAC 61.813 63.158 12.98 0.00 0.00 3.82
146 147 3.545481 GCGGCGATGACACACGAG 61.545 66.667 12.98 0.00 0.00 4.18
147 148 2.126463 CGGCGATGACACACGAGT 60.126 61.111 0.00 0.00 0.00 4.18
160 161 2.355363 CGAGTGCGTTTGACCGGA 60.355 61.111 9.46 0.00 0.00 5.14
161 162 1.736645 CGAGTGCGTTTGACCGGAT 60.737 57.895 9.46 0.00 0.00 4.18
162 163 1.289109 CGAGTGCGTTTGACCGGATT 61.289 55.000 9.46 0.00 0.00 3.01
163 164 0.165944 GAGTGCGTTTGACCGGATTG 59.834 55.000 9.46 0.00 0.00 2.67
164 165 0.534203 AGTGCGTTTGACCGGATTGT 60.534 50.000 9.46 0.00 0.00 2.71
165 166 0.385473 GTGCGTTTGACCGGATTGTG 60.385 55.000 9.46 0.00 0.00 3.33
166 167 1.442017 GCGTTTGACCGGATTGTGC 60.442 57.895 9.46 0.21 0.00 4.57
167 168 1.209127 CGTTTGACCGGATTGTGCC 59.791 57.895 9.46 0.00 0.00 5.01
168 169 1.584495 GTTTGACCGGATTGTGCCC 59.416 57.895 9.46 0.00 0.00 5.36
169 170 1.605165 TTTGACCGGATTGTGCCCC 60.605 57.895 9.46 0.00 0.00 5.80
170 171 2.359015 TTTGACCGGATTGTGCCCCA 62.359 55.000 9.46 0.00 0.00 4.96
171 172 2.438434 GACCGGATTGTGCCCCAG 60.438 66.667 9.46 0.00 0.00 4.45
172 173 2.933287 ACCGGATTGTGCCCCAGA 60.933 61.111 9.46 0.00 0.00 3.86
173 174 2.438434 CCGGATTGTGCCCCAGAC 60.438 66.667 0.00 0.00 0.00 3.51
174 175 2.438434 CGGATTGTGCCCCAGACC 60.438 66.667 0.00 0.00 0.00 3.85
175 176 2.043953 GGATTGTGCCCCAGACCC 60.044 66.667 0.00 0.00 0.00 4.46
176 177 2.763215 GATTGTGCCCCAGACCCA 59.237 61.111 0.00 0.00 0.00 4.51
177 178 1.379044 GATTGTGCCCCAGACCCAG 60.379 63.158 0.00 0.00 0.00 4.45
178 179 2.142292 GATTGTGCCCCAGACCCAGT 62.142 60.000 0.00 0.00 0.00 4.00
179 180 0.844661 ATTGTGCCCCAGACCCAGTA 60.845 55.000 0.00 0.00 0.00 2.74
180 181 0.844661 TTGTGCCCCAGACCCAGTAT 60.845 55.000 0.00 0.00 0.00 2.12
181 182 1.224592 GTGCCCCAGACCCAGTATG 59.775 63.158 0.00 0.00 0.00 2.39
182 183 1.229820 TGCCCCAGACCCAGTATGT 60.230 57.895 0.00 0.00 0.00 2.29
183 184 1.224592 GCCCCAGACCCAGTATGTG 59.775 63.158 0.00 0.00 0.00 3.21
185 186 1.224592 CCCAGACCCAGTATGTGGC 59.775 63.158 0.00 0.00 46.45 5.01
186 187 1.274703 CCCAGACCCAGTATGTGGCT 61.275 60.000 0.00 0.00 46.45 4.75
187 188 0.179000 CCAGACCCAGTATGTGGCTC 59.821 60.000 0.00 0.00 46.45 4.70
188 189 0.179100 CAGACCCAGTATGTGGCTCG 60.179 60.000 0.00 0.00 46.45 5.03
189 190 1.144057 GACCCAGTATGTGGCTCGG 59.856 63.158 0.00 0.00 46.45 4.63
190 191 1.305802 ACCCAGTATGTGGCTCGGA 60.306 57.895 0.00 0.00 46.45 4.55
191 192 0.691078 ACCCAGTATGTGGCTCGGAT 60.691 55.000 0.00 0.00 46.45 4.18
192 193 0.250038 CCCAGTATGTGGCTCGGATG 60.250 60.000 0.00 0.00 46.45 3.51
193 194 0.250038 CCAGTATGTGGCTCGGATGG 60.250 60.000 0.00 0.00 40.39 3.51
194 195 0.250038 CAGTATGTGGCTCGGATGGG 60.250 60.000 0.00 0.00 0.00 4.00
195 196 1.071471 GTATGTGGCTCGGATGGGG 59.929 63.158 0.00 0.00 0.00 4.96
196 197 2.818169 TATGTGGCTCGGATGGGGC 61.818 63.158 0.00 0.00 0.00 5.80
198 199 4.115199 GTGGCTCGGATGGGGCTT 62.115 66.667 0.00 0.00 0.00 4.35
199 200 3.797353 TGGCTCGGATGGGGCTTC 61.797 66.667 0.00 0.00 0.00 3.86
200 201 4.570874 GGCTCGGATGGGGCTTCC 62.571 72.222 0.00 0.00 0.00 3.46
205 206 4.164258 GGATGGGGCTTCCGAATG 57.836 61.111 0.00 0.00 38.76 2.67
206 207 1.531748 GGATGGGGCTTCCGAATGA 59.468 57.895 0.00 0.00 38.76 2.57
207 208 0.536006 GGATGGGGCTTCCGAATGAG 60.536 60.000 0.00 0.00 38.76 2.90
208 209 0.181350 GATGGGGCTTCCGAATGAGT 59.819 55.000 0.00 0.00 38.76 3.41
209 210 0.625849 ATGGGGCTTCCGAATGAGTT 59.374 50.000 0.00 0.00 38.76 3.01
210 211 0.404040 TGGGGCTTCCGAATGAGTTT 59.596 50.000 0.00 0.00 38.76 2.66
211 212 1.095600 GGGGCTTCCGAATGAGTTTC 58.904 55.000 0.00 0.00 0.00 2.78
228 229 3.590824 CGGCTTCCGGCTTTTGAT 58.409 55.556 0.00 0.00 44.15 2.57
229 230 1.137404 CGGCTTCCGGCTTTTGATG 59.863 57.895 0.00 0.00 44.15 3.07
230 231 1.586154 CGGCTTCCGGCTTTTGATGT 61.586 55.000 0.00 0.00 44.15 3.06
231 232 0.603065 GGCTTCCGGCTTTTGATGTT 59.397 50.000 0.00 0.00 41.46 2.71
232 233 1.000843 GGCTTCCGGCTTTTGATGTTT 59.999 47.619 0.00 0.00 41.46 2.83
233 234 2.061028 GCTTCCGGCTTTTGATGTTTG 58.939 47.619 0.00 0.00 38.06 2.93
234 235 2.676076 CTTCCGGCTTTTGATGTTTGG 58.324 47.619 0.00 0.00 0.00 3.28
235 236 0.316841 TCCGGCTTTTGATGTTTGGC 59.683 50.000 0.00 0.00 0.00 4.52
236 237 0.318120 CCGGCTTTTGATGTTTGGCT 59.682 50.000 0.00 0.00 0.00 4.75
237 238 1.270252 CCGGCTTTTGATGTTTGGCTT 60.270 47.619 0.00 0.00 0.00 4.35
238 239 2.029470 CCGGCTTTTGATGTTTGGCTTA 60.029 45.455 0.00 0.00 0.00 3.09
239 240 3.244976 CGGCTTTTGATGTTTGGCTTAG 58.755 45.455 0.00 0.00 0.00 2.18
240 241 3.588955 GGCTTTTGATGTTTGGCTTAGG 58.411 45.455 0.00 0.00 0.00 2.69
241 242 3.006859 GGCTTTTGATGTTTGGCTTAGGT 59.993 43.478 0.00 0.00 0.00 3.08
242 243 3.989817 GCTTTTGATGTTTGGCTTAGGTG 59.010 43.478 0.00 0.00 0.00 4.00
243 244 4.559153 CTTTTGATGTTTGGCTTAGGTGG 58.441 43.478 0.00 0.00 0.00 4.61
244 245 2.214376 TGATGTTTGGCTTAGGTGGG 57.786 50.000 0.00 0.00 0.00 4.61
245 246 1.427368 TGATGTTTGGCTTAGGTGGGT 59.573 47.619 0.00 0.00 0.00 4.51
246 247 1.818674 GATGTTTGGCTTAGGTGGGTG 59.181 52.381 0.00 0.00 0.00 4.61
247 248 0.178975 TGTTTGGCTTAGGTGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
248 249 0.178973 GTTTGGCTTAGGTGGGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
249 250 0.558712 TTTGGCTTAGGTGGGTGGTT 59.441 50.000 0.00 0.00 0.00 3.67
250 251 0.558712 TTGGCTTAGGTGGGTGGTTT 59.441 50.000 0.00 0.00 0.00 3.27
251 252 0.178975 TGGCTTAGGTGGGTGGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
252 253 0.898326 GGCTTAGGTGGGTGGTTTGG 60.898 60.000 0.00 0.00 0.00 3.28
253 254 0.898326 GCTTAGGTGGGTGGTTTGGG 60.898 60.000 0.00 0.00 0.00 4.12
254 255 0.481128 CTTAGGTGGGTGGTTTGGGT 59.519 55.000 0.00 0.00 0.00 4.51
255 256 1.706305 CTTAGGTGGGTGGTTTGGGTA 59.294 52.381 0.00 0.00 0.00 3.69
256 257 1.364269 TAGGTGGGTGGTTTGGGTAG 58.636 55.000 0.00 0.00 0.00 3.18
257 258 0.699922 AGGTGGGTGGTTTGGGTAGT 60.700 55.000 0.00 0.00 0.00 2.73
258 259 0.538746 GGTGGGTGGTTTGGGTAGTG 60.539 60.000 0.00 0.00 0.00 2.74
259 260 0.538746 GTGGGTGGTTTGGGTAGTGG 60.539 60.000 0.00 0.00 0.00 4.00
260 261 1.605451 GGGTGGTTTGGGTAGTGGC 60.605 63.158 0.00 0.00 0.00 5.01
261 262 1.605451 GGTGGTTTGGGTAGTGGCC 60.605 63.158 0.00 0.00 0.00 5.36
269 270 2.506472 GGTAGTGGCCCAGCTAGC 59.494 66.667 6.62 6.62 0.00 3.42
270 271 2.367202 GGTAGTGGCCCAGCTAGCA 61.367 63.158 18.83 0.00 36.18 3.49
271 272 1.153349 GTAGTGGCCCAGCTAGCAC 60.153 63.158 18.83 4.90 0.00 4.40
272 273 2.367202 TAGTGGCCCAGCTAGCACC 61.367 63.158 18.83 12.89 0.00 5.01
273 274 4.803908 GTGGCCCAGCTAGCACCC 62.804 72.222 18.83 11.35 0.00 4.61
276 277 3.732849 GCCCAGCTAGCACCCCTT 61.733 66.667 18.83 0.00 0.00 3.95
277 278 2.592308 CCCAGCTAGCACCCCTTC 59.408 66.667 18.83 0.00 0.00 3.46
278 279 2.300967 CCCAGCTAGCACCCCTTCA 61.301 63.158 18.83 0.00 0.00 3.02
279 280 1.639635 CCCAGCTAGCACCCCTTCAT 61.640 60.000 18.83 0.00 0.00 2.57
280 281 0.179034 CCAGCTAGCACCCCTTCATC 60.179 60.000 18.83 0.00 0.00 2.92
281 282 0.543277 CAGCTAGCACCCCTTCATCA 59.457 55.000 18.83 0.00 0.00 3.07
282 283 1.142465 CAGCTAGCACCCCTTCATCAT 59.858 52.381 18.83 0.00 0.00 2.45
283 284 1.849039 AGCTAGCACCCCTTCATCATT 59.151 47.619 18.83 0.00 0.00 2.57
284 285 2.243221 AGCTAGCACCCCTTCATCATTT 59.757 45.455 18.83 0.00 0.00 2.32
285 286 3.026694 GCTAGCACCCCTTCATCATTTT 58.973 45.455 10.63 0.00 0.00 1.82
286 287 3.181483 GCTAGCACCCCTTCATCATTTTG 60.181 47.826 10.63 0.00 0.00 2.44
287 288 2.181975 AGCACCCCTTCATCATTTTGG 58.818 47.619 0.00 0.00 0.00 3.28
288 289 2.178580 GCACCCCTTCATCATTTTGGA 58.821 47.619 0.00 0.00 0.00 3.53
289 290 2.767960 GCACCCCTTCATCATTTTGGAT 59.232 45.455 0.00 0.00 0.00 3.41
290 291 3.960102 GCACCCCTTCATCATTTTGGATA 59.040 43.478 0.00 0.00 0.00 2.59
291 292 4.038402 GCACCCCTTCATCATTTTGGATAG 59.962 45.833 0.00 0.00 0.00 2.08
292 293 4.586001 CACCCCTTCATCATTTTGGATAGG 59.414 45.833 0.00 0.00 0.00 2.57
293 294 4.482025 ACCCCTTCATCATTTTGGATAGGA 59.518 41.667 0.00 0.00 0.00 2.94
294 295 5.075493 CCCCTTCATCATTTTGGATAGGAG 58.925 45.833 0.00 0.00 0.00 3.69
295 296 5.399497 CCCCTTCATCATTTTGGATAGGAGT 60.399 44.000 0.00 0.00 0.00 3.85
296 297 6.183361 CCCCTTCATCATTTTGGATAGGAGTA 60.183 42.308 0.00 0.00 0.00 2.59
297 298 6.939163 CCCTTCATCATTTTGGATAGGAGTAG 59.061 42.308 0.00 0.00 0.00 2.57
298 299 6.429385 CCTTCATCATTTTGGATAGGAGTAGC 59.571 42.308 0.00 0.00 0.00 3.58
299 300 5.541845 TCATCATTTTGGATAGGAGTAGCG 58.458 41.667 0.00 0.00 0.00 4.26
300 301 4.336889 TCATTTTGGATAGGAGTAGCGG 57.663 45.455 0.00 0.00 0.00 5.52
301 302 2.614829 TTTTGGATAGGAGTAGCGGC 57.385 50.000 0.00 0.00 0.00 6.53
302 303 1.491668 TTTGGATAGGAGTAGCGGCA 58.508 50.000 1.45 0.00 0.00 5.69
303 304 1.717032 TTGGATAGGAGTAGCGGCAT 58.283 50.000 1.45 0.00 0.00 4.40
304 305 2.597578 TGGATAGGAGTAGCGGCATA 57.402 50.000 1.45 0.00 0.00 3.14
305 306 3.101643 TGGATAGGAGTAGCGGCATAT 57.898 47.619 1.45 0.00 0.00 1.78
306 307 2.760650 TGGATAGGAGTAGCGGCATATG 59.239 50.000 1.45 0.00 0.00 1.78
307 308 2.761208 GGATAGGAGTAGCGGCATATGT 59.239 50.000 1.45 0.00 0.00 2.29
308 309 3.195825 GGATAGGAGTAGCGGCATATGTT 59.804 47.826 1.45 0.00 0.00 2.71
309 310 2.533266 AGGAGTAGCGGCATATGTTG 57.467 50.000 1.45 0.00 0.00 3.33
320 321 3.088194 GCATATGTTGCCAAGATGGTG 57.912 47.619 4.29 0.00 46.15 4.17
321 322 2.223876 GCATATGTTGCCAAGATGGTGG 60.224 50.000 4.29 0.00 46.15 4.61
322 323 3.289836 CATATGTTGCCAAGATGGTGGA 58.710 45.455 0.00 0.00 41.65 4.02
323 324 2.537633 ATGTTGCCAAGATGGTGGAT 57.462 45.000 0.00 0.00 41.65 3.41
324 325 2.307496 TGTTGCCAAGATGGTGGATT 57.693 45.000 0.00 0.00 41.65 3.01
325 326 2.170166 TGTTGCCAAGATGGTGGATTC 58.830 47.619 0.00 0.00 41.65 2.52
326 327 2.170166 GTTGCCAAGATGGTGGATTCA 58.830 47.619 0.00 0.00 41.65 2.57
327 328 2.133281 TGCCAAGATGGTGGATTCAG 57.867 50.000 0.00 0.00 41.65 3.02
328 329 1.341285 TGCCAAGATGGTGGATTCAGG 60.341 52.381 0.00 0.00 41.65 3.86
329 330 1.396653 CCAAGATGGTGGATTCAGGC 58.603 55.000 0.00 0.00 41.65 4.85
330 331 1.341285 CCAAGATGGTGGATTCAGGCA 60.341 52.381 0.00 0.00 41.65 4.75
331 332 2.449464 CAAGATGGTGGATTCAGGCAA 58.551 47.619 0.00 0.00 0.00 4.52
332 333 2.827322 CAAGATGGTGGATTCAGGCAAA 59.173 45.455 0.00 0.00 0.00 3.68
333 334 3.393426 AGATGGTGGATTCAGGCAAAT 57.607 42.857 0.00 0.00 0.00 2.32
334 335 3.716431 AGATGGTGGATTCAGGCAAATT 58.284 40.909 0.00 0.00 0.00 1.82
335 336 3.449737 AGATGGTGGATTCAGGCAAATTG 59.550 43.478 0.00 0.00 0.00 2.32
336 337 2.607499 TGGTGGATTCAGGCAAATTGT 58.393 42.857 0.00 0.00 0.00 2.71
337 338 2.971330 TGGTGGATTCAGGCAAATTGTT 59.029 40.909 0.00 0.00 0.00 2.83
338 339 3.244146 TGGTGGATTCAGGCAAATTGTTG 60.244 43.478 0.00 0.00 37.83 3.33
339 340 3.244181 GGTGGATTCAGGCAAATTGTTGT 60.244 43.478 0.00 0.00 37.06 3.32
340 341 4.021544 GGTGGATTCAGGCAAATTGTTGTA 60.022 41.667 0.00 0.00 37.06 2.41
341 342 5.510520 GGTGGATTCAGGCAAATTGTTGTAA 60.511 40.000 0.00 0.00 37.06 2.41
342 343 6.165577 GTGGATTCAGGCAAATTGTTGTAAT 58.834 36.000 0.00 0.00 37.06 1.89
343 344 7.319646 GTGGATTCAGGCAAATTGTTGTAATA 58.680 34.615 0.00 0.00 37.06 0.98
344 345 7.275560 GTGGATTCAGGCAAATTGTTGTAATAC 59.724 37.037 0.00 0.00 37.06 1.89
345 346 7.178274 TGGATTCAGGCAAATTGTTGTAATACT 59.822 33.333 0.00 0.00 37.06 2.12
346 347 8.034804 GGATTCAGGCAAATTGTTGTAATACTT 58.965 33.333 0.00 0.00 37.06 2.24
347 348 9.423061 GATTCAGGCAAATTGTTGTAATACTTT 57.577 29.630 0.00 0.00 37.06 2.66
348 349 8.586570 TTCAGGCAAATTGTTGTAATACTTTG 57.413 30.769 0.00 0.00 37.06 2.77
349 350 7.721402 TCAGGCAAATTGTTGTAATACTTTGT 58.279 30.769 0.00 0.00 37.06 2.83
350 351 8.851145 TCAGGCAAATTGTTGTAATACTTTGTA 58.149 29.630 0.00 0.00 37.06 2.41
351 352 9.469807 CAGGCAAATTGTTGTAATACTTTGTAA 57.530 29.630 0.00 0.00 37.06 2.41
352 353 9.691362 AGGCAAATTGTTGTAATACTTTGTAAG 57.309 29.630 0.00 0.00 37.06 2.34
353 354 8.921670 GGCAAATTGTTGTAATACTTTGTAAGG 58.078 33.333 0.00 0.00 37.06 2.69
354 355 9.471084 GCAAATTGTTGTAATACTTTGTAAGGT 57.529 29.630 0.00 0.00 37.06 3.50
357 358 9.582648 AATTGTTGTAATACTTTGTAAGGTCCT 57.417 29.630 0.00 0.00 0.00 3.85
358 359 8.611654 TTGTTGTAATACTTTGTAAGGTCCTC 57.388 34.615 0.00 0.00 0.00 3.71
359 360 6.869913 TGTTGTAATACTTTGTAAGGTCCTCG 59.130 38.462 0.00 0.00 0.00 4.63
360 361 6.839124 TGTAATACTTTGTAAGGTCCTCGA 57.161 37.500 0.00 0.00 0.00 4.04
361 362 6.860080 TGTAATACTTTGTAAGGTCCTCGAG 58.140 40.000 5.13 5.13 0.00 4.04
362 363 6.660521 TGTAATACTTTGTAAGGTCCTCGAGA 59.339 38.462 15.71 0.00 0.00 4.04
363 364 6.600882 AATACTTTGTAAGGTCCTCGAGAA 57.399 37.500 15.71 0.00 0.00 2.87
364 365 6.793505 ATACTTTGTAAGGTCCTCGAGAAT 57.206 37.500 15.71 0.00 0.00 2.40
365 366 7.893124 ATACTTTGTAAGGTCCTCGAGAATA 57.107 36.000 15.71 0.00 0.00 1.75
366 367 6.600882 ACTTTGTAAGGTCCTCGAGAATAA 57.399 37.500 15.71 0.00 0.00 1.40
367 368 7.184067 ACTTTGTAAGGTCCTCGAGAATAAT 57.816 36.000 15.71 0.00 0.00 1.28
368 369 8.302515 ACTTTGTAAGGTCCTCGAGAATAATA 57.697 34.615 15.71 0.00 0.00 0.98
369 370 8.755977 ACTTTGTAAGGTCCTCGAGAATAATAA 58.244 33.333 15.71 0.00 0.00 1.40
370 371 9.595823 CTTTGTAAGGTCCTCGAGAATAATAAA 57.404 33.333 15.71 5.00 0.00 1.40
377 378 9.765795 AGGTCCTCGAGAATAATAAATAAAGTG 57.234 33.333 15.71 0.00 0.00 3.16
378 379 8.989980 GGTCCTCGAGAATAATAAATAAAGTGG 58.010 37.037 15.71 0.00 0.00 4.00
379 380 9.543783 GTCCTCGAGAATAATAAATAAAGTGGT 57.456 33.333 15.71 0.00 0.00 4.16
392 393 6.699575 AATAAAGTGGTTGTATGCATCTCC 57.300 37.500 0.19 2.39 0.00 3.71
393 394 2.717639 AGTGGTTGTATGCATCTCCC 57.282 50.000 0.19 0.00 0.00 4.30
394 395 1.915489 AGTGGTTGTATGCATCTCCCA 59.085 47.619 0.19 2.59 0.00 4.37
395 396 2.092753 AGTGGTTGTATGCATCTCCCAG 60.093 50.000 0.19 0.00 0.00 4.45
396 397 2.092968 GTGGTTGTATGCATCTCCCAGA 60.093 50.000 0.19 0.00 0.00 3.86
397 398 2.779430 TGGTTGTATGCATCTCCCAGAT 59.221 45.455 0.19 0.00 34.74 2.90
405 406 1.129917 CATCTCCCAGATGCAGAGGT 58.870 55.000 0.61 0.00 44.69 3.85
406 407 1.070445 CATCTCCCAGATGCAGAGGTC 59.930 57.143 0.61 0.00 44.69 3.85
407 408 1.039785 TCTCCCAGATGCAGAGGTCG 61.040 60.000 0.00 0.00 0.00 4.79
408 409 2.025767 CTCCCAGATGCAGAGGTCGG 62.026 65.000 0.00 0.00 0.00 4.79
409 410 2.503061 CCAGATGCAGAGGTCGGG 59.497 66.667 0.00 0.00 0.00 5.14
410 411 2.503061 CAGATGCAGAGGTCGGGG 59.497 66.667 0.00 0.00 0.00 5.73
411 412 2.765807 AGATGCAGAGGTCGGGGG 60.766 66.667 0.00 0.00 0.00 5.40
412 413 3.083997 GATGCAGAGGTCGGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
413 414 3.083997 ATGCAGAGGTCGGGGGTC 61.084 66.667 0.00 0.00 0.00 4.46
414 415 3.924013 ATGCAGAGGTCGGGGGTCA 62.924 63.158 0.00 0.00 0.00 4.02
415 416 3.083997 GCAGAGGTCGGGGGTCAT 61.084 66.667 0.00 0.00 0.00 3.06
416 417 3.095347 GCAGAGGTCGGGGGTCATC 62.095 68.421 0.00 0.00 0.00 2.92
417 418 2.041819 AGAGGTCGGGGGTCATCC 60.042 66.667 0.00 0.00 0.00 3.51
418 419 2.041819 GAGGTCGGGGGTCATCCT 60.042 66.667 0.00 0.00 35.33 3.24
419 420 2.041819 AGGTCGGGGGTCATCCTC 60.042 66.667 0.00 0.00 35.33 3.71
463 464 7.549134 CACATTCTAGATTACTAGTGGTGCAAA 59.451 37.037 5.39 0.00 44.45 3.68
464 465 7.766278 ACATTCTAGATTACTAGTGGTGCAAAG 59.234 37.037 5.39 0.00 44.45 2.77
468 469 6.360370 AGATTACTAGTGGTGCAAAGAGAA 57.640 37.500 5.39 0.00 0.00 2.87
469 470 6.402222 AGATTACTAGTGGTGCAAAGAGAAG 58.598 40.000 5.39 0.00 0.00 2.85
470 471 5.546621 TTACTAGTGGTGCAAAGAGAAGT 57.453 39.130 5.39 0.00 0.00 3.01
509 512 9.575868 TTCATTGTCTATTTTGGTTGTAAGGTA 57.424 29.630 0.00 0.00 0.00 3.08
510 513 9.226606 TCATTGTCTATTTTGGTTGTAAGGTAG 57.773 33.333 0.00 0.00 0.00 3.18
529 532 7.304497 AGGTAGCTAGAAAGAGAAGAAAACA 57.696 36.000 0.00 0.00 0.00 2.83
538 541 8.134202 AGAAAGAGAAGAAAACAAGGGAAAAA 57.866 30.769 0.00 0.00 0.00 1.94
662 665 7.466050 GCAGTTTTAATTATTCTCGGAGGAGTG 60.466 40.741 4.96 0.00 41.26 3.51
752 756 8.058847 TGTATAGCCCTAATGACCATTTCTTTT 58.941 33.333 0.17 0.00 32.50 2.27
933 1174 4.305956 CCCCCAAAGGCTGCTGGT 62.306 66.667 13.32 0.00 0.00 4.00
1284 1534 2.755952 TGCTCTCCCTGCTACTCATA 57.244 50.000 0.00 0.00 0.00 2.15
1401 1669 5.688621 CCAATTTCGCTTATGATGTGATTGG 59.311 40.000 0.00 0.00 31.87 3.16
1435 1706 3.624777 GTCAAGGATGATGTGGATGGTT 58.375 45.455 0.00 0.00 38.01 3.67
1600 1880 0.179161 CAAGCTCCTACTCACCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
1601 1881 1.935327 AAGCTCCTACTCACCGTCGC 61.935 60.000 0.00 0.00 0.00 5.19
1620 1900 1.078918 CTTCTCCATCCGTGCTGCA 60.079 57.895 0.00 0.00 0.00 4.41
1639 1919 4.783621 TGGCGCTGTGGAGGATGC 62.784 66.667 7.64 0.00 0.00 3.91
1760 2158 0.036388 TAGGCCGCCAAGAAGAAGTG 60.036 55.000 13.15 0.00 0.00 3.16
1846 2248 5.789502 ATGTAATCATGTACTCGTAGCCACG 60.790 44.000 0.00 0.00 40.04 4.94
1929 2333 4.332268 GCTCTGATGAAGTGATGAAGAACC 59.668 45.833 0.00 0.00 0.00 3.62
2181 4584 5.707298 ACCTATCTGAGTTCAACAACCAATG 59.293 40.000 0.00 0.00 32.22 2.82
2231 4650 5.899547 TCAGCTCCTCTCACCTAATATTCAA 59.100 40.000 0.00 0.00 0.00 2.69
2312 4731 1.334384 GCCAACAAACCCAACCACCT 61.334 55.000 0.00 0.00 0.00 4.00
2329 4750 0.035056 CCTCCACCAGTCCATTCACC 60.035 60.000 0.00 0.00 0.00 4.02
2341 4769 1.295020 CATTCACCCCACTCCCCTAA 58.705 55.000 0.00 0.00 0.00 2.69
2390 4818 1.194772 CGCTTTCTTCCAGGACGTTTC 59.805 52.381 0.00 0.00 0.00 2.78
2391 4819 2.495084 GCTTTCTTCCAGGACGTTTCT 58.505 47.619 0.00 0.00 0.00 2.52
2398 4845 0.389817 CCAGGACGTTTCTCGCATCA 60.390 55.000 0.00 0.00 44.19 3.07
2430 4877 1.792949 CATGGCGCTTTCCTACGTATC 59.207 52.381 7.64 0.00 0.00 2.24
2522 4969 9.557338 GGTGTTATAATACTACTTATCTCGCTG 57.443 37.037 11.56 0.00 0.00 5.18
2540 4987 2.366916 GCTGACATGTGGCCTCTATACT 59.633 50.000 1.15 0.00 0.00 2.12
2541 4988 3.574396 GCTGACATGTGGCCTCTATACTA 59.426 47.826 1.15 0.00 0.00 1.82
2549 4996 8.275040 ACATGTGGCCTCTATACTATTTCTTTT 58.725 33.333 3.32 0.00 0.00 2.27
2579 5026 9.346725 GAAACTGCATCCTTTATTAAAGTTCAG 57.653 33.333 13.68 14.57 36.77 3.02
2648 5095 4.832266 ACACAGATAATGTTGGGCAAAAGA 59.168 37.500 0.00 0.00 41.41 2.52
2653 5100 5.884792 AGATAATGTTGGGCAAAAGAGAGAG 59.115 40.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.969238 GCCCATCTCCGCACATCG 60.969 66.667 0.00 0.00 38.08 3.84
8 9 1.596477 GAGCCCATCTCCGCACATC 60.596 63.158 0.00 0.00 35.77 3.06
9 10 2.507944 GAGCCCATCTCCGCACAT 59.492 61.111 0.00 0.00 35.77 3.21
10 11 4.147449 CGAGCCCATCTCCGCACA 62.147 66.667 0.00 0.00 38.62 4.57
24 25 3.898509 CCTCTCCTCCTGCGCGAG 61.899 72.222 12.10 3.83 0.00 5.03
25 26 4.742649 ACCTCTCCTCCTGCGCGA 62.743 66.667 12.10 0.00 0.00 5.87
26 27 3.764466 AACCTCTCCTCCTGCGCG 61.764 66.667 0.00 0.00 0.00 6.86
27 28 2.125350 CAACCTCTCCTCCTGCGC 60.125 66.667 0.00 0.00 0.00 6.09
28 29 2.125350 GCAACCTCTCCTCCTGCG 60.125 66.667 0.00 0.00 0.00 5.18
29 30 1.078567 CAGCAACCTCTCCTCCTGC 60.079 63.158 0.00 0.00 0.00 4.85
30 31 0.248843 GACAGCAACCTCTCCTCCTG 59.751 60.000 0.00 0.00 0.00 3.86
31 32 0.116143 AGACAGCAACCTCTCCTCCT 59.884 55.000 0.00 0.00 0.00 3.69
32 33 0.248843 CAGACAGCAACCTCTCCTCC 59.751 60.000 0.00 0.00 0.00 4.30
33 34 0.248843 CCAGACAGCAACCTCTCCTC 59.751 60.000 0.00 0.00 0.00 3.71
34 35 1.835927 GCCAGACAGCAACCTCTCCT 61.836 60.000 0.00 0.00 0.00 3.69
35 36 1.376553 GCCAGACAGCAACCTCTCC 60.377 63.158 0.00 0.00 0.00 3.71
36 37 1.739562 CGCCAGACAGCAACCTCTC 60.740 63.158 0.00 0.00 0.00 3.20
37 38 2.345244 CGCCAGACAGCAACCTCT 59.655 61.111 0.00 0.00 0.00 3.69
38 39 2.029844 GACGCCAGACAGCAACCTC 61.030 63.158 0.00 0.00 0.00 3.85
39 40 2.031163 GACGCCAGACAGCAACCT 59.969 61.111 0.00 0.00 0.00 3.50
40 41 1.672356 ATGACGCCAGACAGCAACC 60.672 57.895 0.00 0.00 0.00 3.77
41 42 1.499056 CATGACGCCAGACAGCAAC 59.501 57.895 0.00 0.00 0.00 4.17
42 43 1.672030 CCATGACGCCAGACAGCAA 60.672 57.895 0.00 0.00 0.00 3.91
43 44 2.046988 CCATGACGCCAGACAGCA 60.047 61.111 0.00 0.00 0.00 4.41
44 45 2.046892 ACCATGACGCCAGACAGC 60.047 61.111 0.00 0.00 0.00 4.40
45 46 1.016130 GTCACCATGACGCCAGACAG 61.016 60.000 0.00 0.00 37.67 3.51
46 47 1.005037 GTCACCATGACGCCAGACA 60.005 57.895 0.00 0.00 37.67 3.41
47 48 3.876300 GTCACCATGACGCCAGAC 58.124 61.111 0.00 0.00 37.67 3.51
54 55 1.421410 GCCATCGACGTCACCATGAC 61.421 60.000 17.16 3.17 43.65 3.06
55 56 1.153647 GCCATCGACGTCACCATGA 60.154 57.895 17.16 4.35 0.00 3.07
56 57 1.153568 AGCCATCGACGTCACCATG 60.154 57.895 17.16 13.34 0.00 3.66
57 58 1.153568 CAGCCATCGACGTCACCAT 60.154 57.895 17.16 0.84 0.00 3.55
58 59 2.212900 CTCAGCCATCGACGTCACCA 62.213 60.000 17.16 0.00 0.00 4.17
59 60 1.517257 CTCAGCCATCGACGTCACC 60.517 63.158 17.16 0.00 0.00 4.02
60 61 1.073216 CACTCAGCCATCGACGTCAC 61.073 60.000 17.16 0.00 0.00 3.67
61 62 1.212751 CACTCAGCCATCGACGTCA 59.787 57.895 17.16 3.13 0.00 4.35
62 63 1.517257 CCACTCAGCCATCGACGTC 60.517 63.158 5.18 5.18 0.00 4.34
63 64 2.573869 CCACTCAGCCATCGACGT 59.426 61.111 0.00 0.00 0.00 4.34
64 65 2.887568 GCCACTCAGCCATCGACG 60.888 66.667 0.00 0.00 0.00 5.12
72 73 1.673665 CCTTGTCTGGCCACTCAGC 60.674 63.158 0.00 0.00 34.91 4.26
73 74 0.976641 TACCTTGTCTGGCCACTCAG 59.023 55.000 0.00 0.00 36.17 3.35
74 75 0.976641 CTACCTTGTCTGGCCACTCA 59.023 55.000 0.00 0.14 0.00 3.41
75 76 1.267121 TCTACCTTGTCTGGCCACTC 58.733 55.000 0.00 0.00 0.00 3.51
76 77 1.625818 CTTCTACCTTGTCTGGCCACT 59.374 52.381 0.00 0.00 0.00 4.00
77 78 1.946283 GCTTCTACCTTGTCTGGCCAC 60.946 57.143 0.00 0.00 0.00 5.01
78 79 0.324943 GCTTCTACCTTGTCTGGCCA 59.675 55.000 4.71 4.71 0.00 5.36
79 80 0.393132 GGCTTCTACCTTGTCTGGCC 60.393 60.000 0.00 0.00 0.00 5.36
80 81 0.615850 AGGCTTCTACCTTGTCTGGC 59.384 55.000 0.00 0.00 36.28 4.85
81 82 1.902508 TGAGGCTTCTACCTTGTCTGG 59.097 52.381 0.00 0.00 41.32 3.86
82 83 3.685139 TTGAGGCTTCTACCTTGTCTG 57.315 47.619 0.00 0.00 41.32 3.51
83 84 5.663106 TCATATTGAGGCTTCTACCTTGTCT 59.337 40.000 0.00 0.00 41.32 3.41
84 85 5.918608 TCATATTGAGGCTTCTACCTTGTC 58.081 41.667 0.00 0.00 41.32 3.18
85 86 5.957771 TCATATTGAGGCTTCTACCTTGT 57.042 39.130 0.00 0.00 41.32 3.16
86 87 6.649973 CAGATCATATTGAGGCTTCTACCTTG 59.350 42.308 0.00 0.00 41.32 3.61
87 88 6.556495 TCAGATCATATTGAGGCTTCTACCTT 59.444 38.462 0.00 0.00 41.32 3.50
88 89 6.080682 TCAGATCATATTGAGGCTTCTACCT 58.919 40.000 0.00 0.00 45.04 3.08
89 90 6.352016 TCAGATCATATTGAGGCTTCTACC 57.648 41.667 0.00 0.00 0.00 3.18
90 91 7.598493 GTCTTCAGATCATATTGAGGCTTCTAC 59.402 40.741 0.00 0.00 0.00 2.59
91 92 7.256119 GGTCTTCAGATCATATTGAGGCTTCTA 60.256 40.741 0.00 0.00 0.00 2.10
92 93 6.464180 GGTCTTCAGATCATATTGAGGCTTCT 60.464 42.308 0.00 0.00 0.00 2.85
93 94 5.700373 GGTCTTCAGATCATATTGAGGCTTC 59.300 44.000 0.00 0.00 0.00 3.86
94 95 5.369110 AGGTCTTCAGATCATATTGAGGCTT 59.631 40.000 0.00 0.00 0.00 4.35
95 96 4.906664 AGGTCTTCAGATCATATTGAGGCT 59.093 41.667 0.00 0.00 0.00 4.58
96 97 4.996122 CAGGTCTTCAGATCATATTGAGGC 59.004 45.833 0.00 0.00 0.00 4.70
97 98 5.990386 CACAGGTCTTCAGATCATATTGAGG 59.010 44.000 0.00 0.00 0.00 3.86
98 99 5.990386 CCACAGGTCTTCAGATCATATTGAG 59.010 44.000 0.00 0.00 0.00 3.02
99 100 5.662657 TCCACAGGTCTTCAGATCATATTGA 59.337 40.000 0.00 0.00 0.00 2.57
100 101 5.922053 TCCACAGGTCTTCAGATCATATTG 58.078 41.667 0.00 0.00 0.00 1.90
101 102 6.385176 TCTTCCACAGGTCTTCAGATCATATT 59.615 38.462 0.00 0.00 0.00 1.28
102 103 5.901853 TCTTCCACAGGTCTTCAGATCATAT 59.098 40.000 0.00 0.00 0.00 1.78
103 104 5.272402 TCTTCCACAGGTCTTCAGATCATA 58.728 41.667 0.00 0.00 0.00 2.15
104 105 4.099633 TCTTCCACAGGTCTTCAGATCAT 58.900 43.478 0.00 0.00 0.00 2.45
105 106 3.510459 TCTTCCACAGGTCTTCAGATCA 58.490 45.455 0.00 0.00 0.00 2.92
106 107 4.440880 CATCTTCCACAGGTCTTCAGATC 58.559 47.826 0.00 0.00 0.00 2.75
107 108 3.199508 CCATCTTCCACAGGTCTTCAGAT 59.800 47.826 0.00 0.00 0.00 2.90
108 109 2.568956 CCATCTTCCACAGGTCTTCAGA 59.431 50.000 0.00 0.00 0.00 3.27
109 110 2.938756 GCCATCTTCCACAGGTCTTCAG 60.939 54.545 0.00 0.00 0.00 3.02
110 111 1.003580 GCCATCTTCCACAGGTCTTCA 59.996 52.381 0.00 0.00 0.00 3.02
111 112 1.743996 GCCATCTTCCACAGGTCTTC 58.256 55.000 0.00 0.00 0.00 2.87
112 113 0.036010 CGCCATCTTCCACAGGTCTT 60.036 55.000 0.00 0.00 0.00 3.01
113 114 1.599047 CGCCATCTTCCACAGGTCT 59.401 57.895 0.00 0.00 0.00 3.85
114 115 1.450312 CCGCCATCTTCCACAGGTC 60.450 63.158 0.00 0.00 0.00 3.85
115 116 2.671070 CCGCCATCTTCCACAGGT 59.329 61.111 0.00 0.00 0.00 4.00
116 117 2.825836 GCCGCCATCTTCCACAGG 60.826 66.667 0.00 0.00 0.00 4.00
117 118 2.930385 ATCGCCGCCATCTTCCACAG 62.930 60.000 0.00 0.00 0.00 3.66
118 119 3.030168 ATCGCCGCCATCTTCCACA 62.030 57.895 0.00 0.00 0.00 4.17
119 120 2.203070 ATCGCCGCCATCTTCCAC 60.203 61.111 0.00 0.00 0.00 4.02
120 121 2.203056 CATCGCCGCCATCTTCCA 60.203 61.111 0.00 0.00 0.00 3.53
121 122 2.108976 TCATCGCCGCCATCTTCC 59.891 61.111 0.00 0.00 0.00 3.46
122 123 1.521457 TGTCATCGCCGCCATCTTC 60.521 57.895 0.00 0.00 0.00 2.87
123 124 1.815421 GTGTCATCGCCGCCATCTT 60.815 57.895 0.00 0.00 0.00 2.40
124 125 2.202932 GTGTCATCGCCGCCATCT 60.203 61.111 0.00 0.00 0.00 2.90
125 126 2.511373 TGTGTCATCGCCGCCATC 60.511 61.111 0.00 0.00 0.00 3.51
126 127 2.819595 GTGTGTCATCGCCGCCAT 60.820 61.111 0.00 0.00 0.00 4.40
129 130 3.545481 CTCGTGTGTCATCGCCGC 61.545 66.667 0.00 0.00 0.00 6.53
130 131 2.126463 ACTCGTGTGTCATCGCCG 60.126 61.111 0.00 0.00 0.00 6.46
131 132 2.730672 GCACTCGTGTGTCATCGCC 61.731 63.158 18.01 0.00 45.44 5.54
132 133 2.772189 GCACTCGTGTGTCATCGC 59.228 61.111 18.01 0.00 45.44 4.58
133 134 3.064178 CGCACTCGTGTGTCATCG 58.936 61.111 18.01 9.68 45.44 3.84
143 144 1.289109 AATCCGGTCAAACGCACTCG 61.289 55.000 0.00 0.00 42.43 4.18
144 145 0.165944 CAATCCGGTCAAACGCACTC 59.834 55.000 0.00 0.00 0.00 3.51
145 146 0.534203 ACAATCCGGTCAAACGCACT 60.534 50.000 0.00 0.00 0.00 4.40
146 147 0.385473 CACAATCCGGTCAAACGCAC 60.385 55.000 0.00 0.00 0.00 5.34
147 148 1.945522 CACAATCCGGTCAAACGCA 59.054 52.632 0.00 0.00 0.00 5.24
148 149 1.442017 GCACAATCCGGTCAAACGC 60.442 57.895 0.00 0.00 0.00 4.84
149 150 1.209127 GGCACAATCCGGTCAAACG 59.791 57.895 0.00 0.00 0.00 3.60
150 151 1.584495 GGGCACAATCCGGTCAAAC 59.416 57.895 0.00 0.00 0.00 2.93
151 152 1.605165 GGGGCACAATCCGGTCAAA 60.605 57.895 0.00 0.00 0.00 2.69
152 153 2.034999 GGGGCACAATCCGGTCAA 59.965 61.111 0.00 0.00 0.00 3.18
153 154 3.253061 TGGGGCACAATCCGGTCA 61.253 61.111 0.00 0.00 0.00 4.02
154 155 2.438434 CTGGGGCACAATCCGGTC 60.438 66.667 0.00 0.00 0.00 4.79
155 156 2.933287 TCTGGGGCACAATCCGGT 60.933 61.111 0.00 0.00 0.00 5.28
156 157 2.438434 GTCTGGGGCACAATCCGG 60.438 66.667 0.00 0.00 0.00 5.14
157 158 2.438434 GGTCTGGGGCACAATCCG 60.438 66.667 0.00 0.00 0.00 4.18
158 159 2.043953 GGGTCTGGGGCACAATCC 60.044 66.667 0.00 0.00 0.00 3.01
159 160 1.379044 CTGGGTCTGGGGCACAATC 60.379 63.158 0.00 0.00 0.00 2.67
160 161 0.844661 TACTGGGTCTGGGGCACAAT 60.845 55.000 0.00 0.00 0.00 2.71
161 162 0.844661 ATACTGGGTCTGGGGCACAA 60.845 55.000 0.00 0.00 0.00 3.33
162 163 1.229820 ATACTGGGTCTGGGGCACA 60.230 57.895 0.00 0.00 0.00 4.57
163 164 1.224592 CATACTGGGTCTGGGGCAC 59.775 63.158 0.00 0.00 0.00 5.01
164 165 1.229820 ACATACTGGGTCTGGGGCA 60.230 57.895 0.00 0.00 0.00 5.36
165 166 1.224592 CACATACTGGGTCTGGGGC 59.775 63.158 0.00 0.00 0.00 5.80
166 167 1.915228 CCACATACTGGGTCTGGGG 59.085 63.158 0.00 0.00 36.18 4.96
167 168 1.224592 GCCACATACTGGGTCTGGG 59.775 63.158 0.00 0.00 41.02 4.45
168 169 4.963878 GCCACATACTGGGTCTGG 57.036 61.111 0.00 0.00 41.02 3.86
173 174 0.250038 CATCCGAGCCACATACTGGG 60.250 60.000 0.00 0.00 41.02 4.45
174 175 0.250038 CCATCCGAGCCACATACTGG 60.250 60.000 0.00 0.00 44.08 4.00
175 176 0.250038 CCCATCCGAGCCACATACTG 60.250 60.000 0.00 0.00 0.00 2.74
176 177 1.410850 CCCCATCCGAGCCACATACT 61.411 60.000 0.00 0.00 0.00 2.12
177 178 1.071471 CCCCATCCGAGCCACATAC 59.929 63.158 0.00 0.00 0.00 2.39
178 179 2.818169 GCCCCATCCGAGCCACATA 61.818 63.158 0.00 0.00 0.00 2.29
179 180 4.195334 GCCCCATCCGAGCCACAT 62.195 66.667 0.00 0.00 0.00 3.21
181 182 4.115199 AAGCCCCATCCGAGCCAC 62.115 66.667 0.00 0.00 0.00 5.01
182 183 3.797353 GAAGCCCCATCCGAGCCA 61.797 66.667 0.00 0.00 0.00 4.75
183 184 4.570874 GGAAGCCCCATCCGAGCC 62.571 72.222 0.00 0.00 34.14 4.70
188 189 0.536006 CTCATTCGGAAGCCCCATCC 60.536 60.000 0.00 0.00 34.14 3.51
189 190 0.181350 ACTCATTCGGAAGCCCCATC 59.819 55.000 0.00 0.00 34.14 3.51
190 191 0.625849 AACTCATTCGGAAGCCCCAT 59.374 50.000 0.00 0.00 34.14 4.00
191 192 0.404040 AAACTCATTCGGAAGCCCCA 59.596 50.000 0.00 0.00 34.14 4.96
192 193 1.095600 GAAACTCATTCGGAAGCCCC 58.904 55.000 0.00 0.00 0.00 5.80
212 213 0.603065 AACATCAAAAGCCGGAAGCC 59.397 50.000 5.05 0.00 45.47 4.35
213 214 2.061028 CAAACATCAAAAGCCGGAAGC 58.939 47.619 5.05 0.00 44.25 3.86
214 215 2.676076 CCAAACATCAAAAGCCGGAAG 58.324 47.619 5.05 0.00 0.00 3.46
215 216 1.270041 GCCAAACATCAAAAGCCGGAA 60.270 47.619 5.05 0.00 0.00 4.30
216 217 0.316841 GCCAAACATCAAAAGCCGGA 59.683 50.000 5.05 0.00 0.00 5.14
217 218 0.318120 AGCCAAACATCAAAAGCCGG 59.682 50.000 0.00 0.00 0.00 6.13
218 219 2.153366 AAGCCAAACATCAAAAGCCG 57.847 45.000 0.00 0.00 0.00 5.52
219 220 3.006859 ACCTAAGCCAAACATCAAAAGCC 59.993 43.478 0.00 0.00 0.00 4.35
220 221 3.989817 CACCTAAGCCAAACATCAAAAGC 59.010 43.478 0.00 0.00 0.00 3.51
221 222 4.559153 CCACCTAAGCCAAACATCAAAAG 58.441 43.478 0.00 0.00 0.00 2.27
222 223 3.323403 CCCACCTAAGCCAAACATCAAAA 59.677 43.478 0.00 0.00 0.00 2.44
223 224 2.896685 CCCACCTAAGCCAAACATCAAA 59.103 45.455 0.00 0.00 0.00 2.69
224 225 2.158385 ACCCACCTAAGCCAAACATCAA 60.158 45.455 0.00 0.00 0.00 2.57
225 226 1.427368 ACCCACCTAAGCCAAACATCA 59.573 47.619 0.00 0.00 0.00 3.07
226 227 1.818674 CACCCACCTAAGCCAAACATC 59.181 52.381 0.00 0.00 0.00 3.06
227 228 1.549950 CCACCCACCTAAGCCAAACAT 60.550 52.381 0.00 0.00 0.00 2.71
228 229 0.178975 CCACCCACCTAAGCCAAACA 60.179 55.000 0.00 0.00 0.00 2.83
229 230 0.178973 ACCACCCACCTAAGCCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
230 231 0.558712 AACCACCCACCTAAGCCAAA 59.441 50.000 0.00 0.00 0.00 3.28
231 232 0.558712 AAACCACCCACCTAAGCCAA 59.441 50.000 0.00 0.00 0.00 4.52
232 233 0.178975 CAAACCACCCACCTAAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
233 234 0.898326 CCAAACCACCCACCTAAGCC 60.898 60.000 0.00 0.00 0.00 4.35
234 235 0.898326 CCCAAACCACCCACCTAAGC 60.898 60.000 0.00 0.00 0.00 3.09
235 236 0.481128 ACCCAAACCACCCACCTAAG 59.519 55.000 0.00 0.00 0.00 2.18
236 237 1.706305 CTACCCAAACCACCCACCTAA 59.294 52.381 0.00 0.00 0.00 2.69
237 238 1.364269 CTACCCAAACCACCCACCTA 58.636 55.000 0.00 0.00 0.00 3.08
238 239 0.699922 ACTACCCAAACCACCCACCT 60.700 55.000 0.00 0.00 0.00 4.00
239 240 0.538746 CACTACCCAAACCACCCACC 60.539 60.000 0.00 0.00 0.00 4.61
240 241 0.538746 CCACTACCCAAACCACCCAC 60.539 60.000 0.00 0.00 0.00 4.61
241 242 1.847686 CCACTACCCAAACCACCCA 59.152 57.895 0.00 0.00 0.00 4.51
242 243 1.605451 GCCACTACCCAAACCACCC 60.605 63.158 0.00 0.00 0.00 4.61
243 244 1.605451 GGCCACTACCCAAACCACC 60.605 63.158 0.00 0.00 0.00 4.61
244 245 4.090723 GGCCACTACCCAAACCAC 57.909 61.111 0.00 0.00 0.00 4.16
252 253 2.367202 TGCTAGCTGGGCCACTACC 61.367 63.158 17.23 1.99 0.00 3.18
253 254 1.153349 GTGCTAGCTGGGCCACTAC 60.153 63.158 17.23 5.65 0.00 2.73
254 255 2.367202 GGTGCTAGCTGGGCCACTA 61.367 63.158 17.23 8.85 0.00 2.74
255 256 3.721706 GGTGCTAGCTGGGCCACT 61.722 66.667 17.23 8.06 0.00 4.00
256 257 4.803908 GGGTGCTAGCTGGGCCAC 62.804 72.222 17.23 4.06 0.00 5.01
259 260 3.705934 GAAGGGGTGCTAGCTGGGC 62.706 68.421 17.23 0.81 0.00 5.36
260 261 1.639635 ATGAAGGGGTGCTAGCTGGG 61.640 60.000 17.23 0.00 0.00 4.45
261 262 0.179034 GATGAAGGGGTGCTAGCTGG 60.179 60.000 17.23 0.00 0.00 4.85
262 263 0.543277 TGATGAAGGGGTGCTAGCTG 59.457 55.000 17.23 0.00 0.00 4.24
263 264 1.516110 ATGATGAAGGGGTGCTAGCT 58.484 50.000 17.23 0.00 0.00 3.32
264 265 2.355010 AATGATGAAGGGGTGCTAGC 57.645 50.000 8.10 8.10 0.00 3.42
265 266 3.382546 CCAAAATGATGAAGGGGTGCTAG 59.617 47.826 0.00 0.00 0.00 3.42
266 267 3.011144 TCCAAAATGATGAAGGGGTGCTA 59.989 43.478 0.00 0.00 0.00 3.49
267 268 2.181975 CCAAAATGATGAAGGGGTGCT 58.818 47.619 0.00 0.00 0.00 4.40
268 269 2.178580 TCCAAAATGATGAAGGGGTGC 58.821 47.619 0.00 0.00 0.00 5.01
269 270 4.586001 CCTATCCAAAATGATGAAGGGGTG 59.414 45.833 0.00 0.00 0.00 4.61
270 271 4.482025 TCCTATCCAAAATGATGAAGGGGT 59.518 41.667 0.00 0.00 0.00 4.95
271 272 5.065613 TCCTATCCAAAATGATGAAGGGG 57.934 43.478 0.00 0.00 0.00 4.79
272 273 5.699143 ACTCCTATCCAAAATGATGAAGGG 58.301 41.667 0.00 0.00 0.00 3.95
273 274 6.429385 GCTACTCCTATCCAAAATGATGAAGG 59.571 42.308 0.00 0.00 0.00 3.46
274 275 6.146837 CGCTACTCCTATCCAAAATGATGAAG 59.853 42.308 0.00 0.00 0.00 3.02
275 276 5.991606 CGCTACTCCTATCCAAAATGATGAA 59.008 40.000 0.00 0.00 0.00 2.57
276 277 5.511373 CCGCTACTCCTATCCAAAATGATGA 60.511 44.000 0.00 0.00 0.00 2.92
277 278 4.692625 CCGCTACTCCTATCCAAAATGATG 59.307 45.833 0.00 0.00 0.00 3.07
278 279 4.804261 GCCGCTACTCCTATCCAAAATGAT 60.804 45.833 0.00 0.00 0.00 2.45
279 280 3.494398 GCCGCTACTCCTATCCAAAATGA 60.494 47.826 0.00 0.00 0.00 2.57
280 281 2.808543 GCCGCTACTCCTATCCAAAATG 59.191 50.000 0.00 0.00 0.00 2.32
281 282 2.438021 TGCCGCTACTCCTATCCAAAAT 59.562 45.455 0.00 0.00 0.00 1.82
282 283 1.834896 TGCCGCTACTCCTATCCAAAA 59.165 47.619 0.00 0.00 0.00 2.44
283 284 1.491668 TGCCGCTACTCCTATCCAAA 58.508 50.000 0.00 0.00 0.00 3.28
284 285 1.717032 ATGCCGCTACTCCTATCCAA 58.283 50.000 0.00 0.00 0.00 3.53
285 286 2.597578 TATGCCGCTACTCCTATCCA 57.402 50.000 0.00 0.00 0.00 3.41
286 287 2.761208 ACATATGCCGCTACTCCTATCC 59.239 50.000 1.58 0.00 0.00 2.59
287 288 4.177026 CAACATATGCCGCTACTCCTATC 58.823 47.826 1.58 0.00 0.00 2.08
288 289 4.193826 CAACATATGCCGCTACTCCTAT 57.806 45.455 1.58 0.00 0.00 2.57
289 290 3.660501 CAACATATGCCGCTACTCCTA 57.339 47.619 1.58 0.00 0.00 2.94
290 291 2.533266 CAACATATGCCGCTACTCCT 57.467 50.000 1.58 0.00 0.00 3.69
306 307 2.165030 CTGAATCCACCATCTTGGCAAC 59.835 50.000 0.00 0.00 42.67 4.17
307 308 2.449464 CTGAATCCACCATCTTGGCAA 58.551 47.619 0.00 0.00 42.67 4.52
308 309 1.341285 CCTGAATCCACCATCTTGGCA 60.341 52.381 0.00 0.00 42.67 4.92
309 310 1.396653 CCTGAATCCACCATCTTGGC 58.603 55.000 0.00 0.00 42.67 4.52
310 311 1.341285 TGCCTGAATCCACCATCTTGG 60.341 52.381 0.00 0.00 45.02 3.61
311 312 2.133281 TGCCTGAATCCACCATCTTG 57.867 50.000 0.00 0.00 0.00 3.02
312 313 2.905415 TTGCCTGAATCCACCATCTT 57.095 45.000 0.00 0.00 0.00 2.40
313 314 2.905415 TTTGCCTGAATCCACCATCT 57.095 45.000 0.00 0.00 0.00 2.90
314 315 3.196254 ACAATTTGCCTGAATCCACCATC 59.804 43.478 0.00 0.00 0.00 3.51
315 316 3.175594 ACAATTTGCCTGAATCCACCAT 58.824 40.909 0.00 0.00 0.00 3.55
316 317 2.607499 ACAATTTGCCTGAATCCACCA 58.393 42.857 0.00 0.00 0.00 4.17
317 318 3.244181 ACAACAATTTGCCTGAATCCACC 60.244 43.478 6.18 0.00 36.00 4.61
318 319 3.993920 ACAACAATTTGCCTGAATCCAC 58.006 40.909 6.18 0.00 36.00 4.02
319 320 5.798125 TTACAACAATTTGCCTGAATCCA 57.202 34.783 6.18 0.00 36.00 3.41
320 321 7.547227 AGTATTACAACAATTTGCCTGAATCC 58.453 34.615 6.18 0.00 36.00 3.01
321 322 8.986477 AAGTATTACAACAATTTGCCTGAATC 57.014 30.769 6.18 0.00 36.00 2.52
322 323 9.206870 CAAAGTATTACAACAATTTGCCTGAAT 57.793 29.630 6.18 0.99 36.00 2.57
323 324 8.200792 ACAAAGTATTACAACAATTTGCCTGAA 58.799 29.630 6.18 0.00 36.00 3.02
324 325 7.721402 ACAAAGTATTACAACAATTTGCCTGA 58.279 30.769 6.18 0.00 36.00 3.86
325 326 7.945033 ACAAAGTATTACAACAATTTGCCTG 57.055 32.000 0.00 0.00 36.00 4.85
326 327 9.691362 CTTACAAAGTATTACAACAATTTGCCT 57.309 29.630 0.00 0.00 36.00 4.75
327 328 8.921670 CCTTACAAAGTATTACAACAATTTGCC 58.078 33.333 0.00 0.00 36.00 4.52
328 329 9.471084 ACCTTACAAAGTATTACAACAATTTGC 57.529 29.630 0.00 0.00 36.00 3.68
331 332 9.582648 AGGACCTTACAAAGTATTACAACAATT 57.417 29.630 0.00 0.00 0.00 2.32
332 333 9.227777 GAGGACCTTACAAAGTATTACAACAAT 57.772 33.333 0.00 0.00 0.00 2.71
333 334 7.385752 CGAGGACCTTACAAAGTATTACAACAA 59.614 37.037 0.00 0.00 0.00 2.83
334 335 6.869913 CGAGGACCTTACAAAGTATTACAACA 59.130 38.462 0.00 0.00 0.00 3.33
335 336 7.092716 TCGAGGACCTTACAAAGTATTACAAC 58.907 38.462 0.00 0.00 0.00 3.32
336 337 7.177216 TCTCGAGGACCTTACAAAGTATTACAA 59.823 37.037 13.56 0.00 0.00 2.41
337 338 6.660521 TCTCGAGGACCTTACAAAGTATTACA 59.339 38.462 13.56 0.00 0.00 2.41
338 339 7.093322 TCTCGAGGACCTTACAAAGTATTAC 57.907 40.000 13.56 0.00 0.00 1.89
339 340 7.707624 TTCTCGAGGACCTTACAAAGTATTA 57.292 36.000 13.56 0.00 0.00 0.98
340 341 6.600882 TTCTCGAGGACCTTACAAAGTATT 57.399 37.500 13.56 0.00 0.00 1.89
341 342 6.793505 ATTCTCGAGGACCTTACAAAGTAT 57.206 37.500 13.56 0.00 0.00 2.12
342 343 7.707624 TTATTCTCGAGGACCTTACAAAGTA 57.292 36.000 13.56 0.00 0.00 2.24
343 344 6.600882 TTATTCTCGAGGACCTTACAAAGT 57.399 37.500 13.56 0.00 0.00 2.66
344 345 9.595823 TTTATTATTCTCGAGGACCTTACAAAG 57.404 33.333 13.56 0.00 0.00 2.77
351 352 9.765795 CACTTTATTTATTATTCTCGAGGACCT 57.234 33.333 13.56 0.00 0.00 3.85
352 353 8.989980 CCACTTTATTTATTATTCTCGAGGACC 58.010 37.037 13.56 0.00 0.00 4.46
353 354 9.543783 ACCACTTTATTTATTATTCTCGAGGAC 57.456 33.333 13.56 0.00 0.00 3.85
366 367 8.850156 GGAGATGCATACAACCACTTTATTTAT 58.150 33.333 0.00 0.00 0.00 1.40
367 368 7.284489 GGGAGATGCATACAACCACTTTATTTA 59.716 37.037 0.00 0.00 0.00 1.40
368 369 6.096846 GGGAGATGCATACAACCACTTTATTT 59.903 38.462 0.00 0.00 0.00 1.40
369 370 5.594317 GGGAGATGCATACAACCACTTTATT 59.406 40.000 0.00 0.00 0.00 1.40
370 371 5.133221 GGGAGATGCATACAACCACTTTAT 58.867 41.667 0.00 0.00 0.00 1.40
371 372 4.018870 TGGGAGATGCATACAACCACTTTA 60.019 41.667 0.00 0.00 0.00 1.85
372 373 3.245229 TGGGAGATGCATACAACCACTTT 60.245 43.478 0.00 0.00 0.00 2.66
373 374 2.308570 TGGGAGATGCATACAACCACTT 59.691 45.455 0.00 0.00 0.00 3.16
374 375 1.915489 TGGGAGATGCATACAACCACT 59.085 47.619 0.00 0.00 0.00 4.00
375 376 2.092968 TCTGGGAGATGCATACAACCAC 60.093 50.000 0.00 0.00 0.00 4.16
376 377 2.195727 TCTGGGAGATGCATACAACCA 58.804 47.619 0.00 5.45 0.00 3.67
377 378 3.144506 CATCTGGGAGATGCATACAACC 58.855 50.000 0.00 0.30 44.69 3.77
387 388 1.422531 GACCTCTGCATCTGGGAGAT 58.577 55.000 1.66 0.00 43.58 2.75
388 389 1.039785 CGACCTCTGCATCTGGGAGA 61.040 60.000 1.66 0.00 42.24 3.71
389 390 1.440893 CGACCTCTGCATCTGGGAG 59.559 63.158 0.00 0.00 36.05 4.30
390 391 2.060383 CCGACCTCTGCATCTGGGA 61.060 63.158 0.00 0.00 0.00 4.37
391 392 2.503061 CCGACCTCTGCATCTGGG 59.497 66.667 0.00 0.00 0.00 4.45
392 393 2.503061 CCCGACCTCTGCATCTGG 59.497 66.667 0.00 0.00 0.00 3.86
393 394 2.503061 CCCCGACCTCTGCATCTG 59.497 66.667 0.00 0.00 0.00 2.90
394 395 2.765807 CCCCCGACCTCTGCATCT 60.766 66.667 0.00 0.00 0.00 2.90
395 396 3.083997 ACCCCCGACCTCTGCATC 61.084 66.667 0.00 0.00 0.00 3.91
396 397 3.083997 GACCCCCGACCTCTGCAT 61.084 66.667 0.00 0.00 0.00 3.96
397 398 3.924013 ATGACCCCCGACCTCTGCA 62.924 63.158 0.00 0.00 0.00 4.41
398 399 3.083997 ATGACCCCCGACCTCTGC 61.084 66.667 0.00 0.00 0.00 4.26
399 400 2.435693 GGATGACCCCCGACCTCTG 61.436 68.421 0.00 0.00 0.00 3.35
400 401 2.041819 GGATGACCCCCGACCTCT 60.042 66.667 0.00 0.00 0.00 3.69
401 402 2.041819 AGGATGACCCCCGACCTC 60.042 66.667 0.00 0.00 36.73 3.85
402 403 2.041819 GAGGATGACCCCCGACCT 60.042 66.667 0.00 0.00 36.73 3.85
403 404 3.162154 GGAGGATGACCCCCGACC 61.162 72.222 0.00 0.00 36.73 4.79
404 405 1.272554 AAAGGAGGATGACCCCCGAC 61.273 60.000 0.00 0.00 36.73 4.79
405 406 0.549169 AAAAGGAGGATGACCCCCGA 60.549 55.000 0.00 0.00 36.73 5.14
406 407 0.331616 AAAAAGGAGGATGACCCCCG 59.668 55.000 0.00 0.00 36.73 5.73
433 434 9.823647 CACCACTAGTAATCTAGAATGTGATTT 57.176 33.333 0.00 0.00 44.52 2.17
434 435 7.928706 GCACCACTAGTAATCTAGAATGTGATT 59.071 37.037 17.71 0.00 44.52 2.57
435 436 7.069950 TGCACCACTAGTAATCTAGAATGTGAT 59.930 37.037 17.71 0.00 44.52 3.06
442 443 6.890268 TCTCTTTGCACCACTAGTAATCTAGA 59.110 38.462 8.91 0.00 44.52 2.43
444 445 7.178628 ACTTCTCTTTGCACCACTAGTAATCTA 59.821 37.037 0.00 0.00 0.00 1.98
463 464 6.611613 TGAAGTAATGATGTGGACTTCTCT 57.388 37.500 13.14 0.00 45.23 3.10
464 465 7.335422 ACAATGAAGTAATGATGTGGACTTCTC 59.665 37.037 13.14 0.00 45.23 2.87
468 469 6.715280 AGACAATGAAGTAATGATGTGGACT 58.285 36.000 0.00 0.00 0.00 3.85
469 470 6.992063 AGACAATGAAGTAATGATGTGGAC 57.008 37.500 0.00 0.00 0.00 4.02
470 471 9.685276 AAATAGACAATGAAGTAATGATGTGGA 57.315 29.630 0.00 0.00 0.00 4.02
499 502 7.828712 TCTTCTCTTTCTAGCTACCTTACAAC 58.171 38.462 0.00 0.00 0.00 3.32
509 512 6.000840 CCCTTGTTTTCTTCTCTTTCTAGCT 58.999 40.000 0.00 0.00 0.00 3.32
510 513 5.998363 TCCCTTGTTTTCTTCTCTTTCTAGC 59.002 40.000 0.00 0.00 0.00 3.42
542 545 7.234661 TGATATATTGATGCACCGTACCTAA 57.765 36.000 0.00 0.00 0.00 2.69
622 625 7.986085 ATTAAAACTGCTTGAGTCTGTACAT 57.014 32.000 0.00 0.00 31.73 2.29
662 665 3.865164 CAGCACAAAAGTTTCTCCCAAAC 59.135 43.478 0.00 0.00 0.00 2.93
868 877 2.362397 TCTCTCTCTCTCTCTCGCTCTC 59.638 54.545 0.00 0.00 0.00 3.20
933 1174 0.533308 GTGGCTGGGTTGTGTTACGA 60.533 55.000 0.00 0.00 0.00 3.43
1173 1423 1.899814 ACGAGGTAGAGGAATGTTGCA 59.100 47.619 0.00 0.00 0.00 4.08
1340 1590 1.129326 GTTTGACGAGTGAGTGACGG 58.871 55.000 0.00 0.00 0.00 4.79
1375 1636 3.038017 CACATCATAAGCGAAATTGGCG 58.962 45.455 0.00 0.00 35.00 5.69
1401 1669 4.458989 TCATCCTTGACCTACAACATTTGC 59.541 41.667 0.00 0.00 34.56 3.68
1600 1880 1.817099 CAGCACGGATGGAGAAGGC 60.817 63.158 0.00 0.00 0.00 4.35
1601 1881 1.817099 GCAGCACGGATGGAGAAGG 60.817 63.158 0.00 0.00 0.00 3.46
1620 1900 3.005539 ATCCTCCACAGCGCCACT 61.006 61.111 2.29 0.00 0.00 4.00
1670 2006 3.151554 ACGTACACTCATCACACTACCA 58.848 45.455 0.00 0.00 0.00 3.25
1760 2158 3.506455 TGTGTTAGATAGATAGCTCCGGC 59.494 47.826 0.00 0.00 39.06 6.13
1813 2215 8.807118 ACGAGTACATGATTACATAGAATGGAT 58.193 33.333 0.00 0.00 35.09 3.41
1846 2248 8.157476 ACCTGATTACATATACTGGAATTCACC 58.843 37.037 7.93 0.00 38.60 4.02
1929 2333 9.976511 AATGCAAAATGATTACATAGAATGGAG 57.023 29.630 0.00 0.00 35.50 3.86
2058 2493 1.518367 TCCCACCAGGAACAGAAAGT 58.482 50.000 0.00 0.00 43.78 2.66
2112 4450 3.506096 CTCTGCAGGCCATGTGCG 61.506 66.667 15.13 3.27 44.35 5.34
2126 4464 5.808540 CGCTACGTAGCTATCTATCTTCTCT 59.191 44.000 36.89 0.00 46.85 3.10
2162 4500 6.320926 TGATTTCATTGGTTGTTGAACTCAGA 59.679 34.615 0.00 0.00 36.92 3.27
2312 4731 1.497309 GGGGTGAATGGACTGGTGGA 61.497 60.000 0.00 0.00 0.00 4.02
2329 4750 0.183731 GCAAGGATTAGGGGAGTGGG 59.816 60.000 0.00 0.00 0.00 4.61
2341 4769 5.750352 ATGGAATTTTTGTGAGCAAGGAT 57.250 34.783 0.00 0.00 35.82 3.24
2390 4818 0.674581 TGCCTGTTTCCTGATGCGAG 60.675 55.000 0.00 0.00 0.00 5.03
2391 4819 0.955428 GTGCCTGTTTCCTGATGCGA 60.955 55.000 0.00 0.00 0.00 5.10
2398 4845 1.973281 CGCCATGTGCCTGTTTCCT 60.973 57.895 0.00 0.00 36.24 3.36
2518 4965 0.105593 ATAGAGGCCACATGTCAGCG 59.894 55.000 5.01 0.00 0.00 5.18
2522 4969 6.998802 AGAAATAGTATAGAGGCCACATGTC 58.001 40.000 5.01 0.00 0.00 3.06
2549 4996 9.077885 ACTTTAATAAAGGATGCAGTTTCTCAA 57.922 29.630 16.15 0.00 42.82 3.02
2663 5110 4.734652 TCCATTCCTTTCGGGCAC 57.265 55.556 0.00 0.00 34.39 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.