Multiple sequence alignment - TraesCS6B01G121400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G121400 chr6B 100.000 4058 0 0 1 4058 116246425 116250482 0.000000e+00 7494
1 TraesCS6B01G121400 chr6B 92.517 294 17 4 3 292 116290843 116291135 2.260000e-112 416
2 TraesCS6B01G121400 chr3B 95.813 3009 81 5 1068 4058 321773828 321776809 0.000000e+00 4817
3 TraesCS6B01G121400 chr6A 85.844 2098 243 27 1984 4058 431194854 431192788 0.000000e+00 2180
4 TraesCS6B01G121400 chr6A 85.842 1561 202 6 377 1936 431196646 431195104 0.000000e+00 1640
5 TraesCS6B01G121400 chr5A 85.729 1002 117 13 3075 4056 168840334 168839339 0.000000e+00 1035
6 TraesCS6B01G121400 chr1A 91.667 360 28 2 3699 4057 568938018 568938376 7.830000e-137 497


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G121400 chr6B 116246425 116250482 4057 False 7494 7494 100.000 1 4058 1 chr6B.!!$F1 4057
1 TraesCS6B01G121400 chr3B 321773828 321776809 2981 False 4817 4817 95.813 1068 4058 1 chr3B.!!$F1 2990
2 TraesCS6B01G121400 chr6A 431192788 431196646 3858 True 1910 2180 85.843 377 4058 2 chr6A.!!$R1 3681
3 TraesCS6B01G121400 chr5A 168839339 168840334 995 True 1035 1035 85.729 3075 4056 1 chr5A.!!$R1 981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.039035 TTCACCCTTCCGGAAATGGG 59.961 55.0 30.84 30.84 44.89 4.00 F
994 995 0.105453 AGGTATCATCTCCCGCACCT 60.105 55.0 0.00 0.00 0.00 4.00 F
1102 1103 0.032813 CATGGTCCAATCCCTGGCTT 60.033 55.0 0.00 0.00 45.98 4.35 F
2146 2374 0.246360 CGGTGCACATGGACACTCTA 59.754 55.0 20.43 0.00 38.19 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1015 0.232303 CGCGATTACTGAAATCCGCC 59.768 55.0 0.00 0.00 40.91 6.13 R
2464 2692 0.035152 TCATCATCCGGCACAGCTTT 60.035 50.0 0.00 0.00 0.00 3.51 R
2998 3226 0.251354 GCACTGAAGCCCTCATGAGA 59.749 55.0 24.62 1.62 32.14 3.27 R
3805 4051 0.385849 TCGAAACGAAAGCGACGCTA 60.386 50.0 24.77 0.03 38.25 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.462034 TTTTTCAGTTTGCATCGGTTTTG 57.538 34.783 0.00 0.00 0.00 2.44
33 34 2.791383 TCAGTTTGCATCGGTTTTGG 57.209 45.000 0.00 0.00 0.00 3.28
34 35 2.028130 TCAGTTTGCATCGGTTTTGGT 58.972 42.857 0.00 0.00 0.00 3.67
35 36 2.428890 TCAGTTTGCATCGGTTTTGGTT 59.571 40.909 0.00 0.00 0.00 3.67
36 37 3.632604 TCAGTTTGCATCGGTTTTGGTTA 59.367 39.130 0.00 0.00 0.00 2.85
37 38 4.098044 TCAGTTTGCATCGGTTTTGGTTAA 59.902 37.500 0.00 0.00 0.00 2.01
38 39 4.987912 CAGTTTGCATCGGTTTTGGTTAAT 59.012 37.500 0.00 0.00 0.00 1.40
39 40 5.465056 CAGTTTGCATCGGTTTTGGTTAATT 59.535 36.000 0.00 0.00 0.00 1.40
40 41 5.465056 AGTTTGCATCGGTTTTGGTTAATTG 59.535 36.000 0.00 0.00 0.00 2.32
41 42 3.321497 TGCATCGGTTTTGGTTAATTGC 58.679 40.909 0.00 0.00 0.00 3.56
42 43 3.006323 TGCATCGGTTTTGGTTAATTGCT 59.994 39.130 0.00 0.00 0.00 3.91
43 44 3.612423 GCATCGGTTTTGGTTAATTGCTC 59.388 43.478 0.00 0.00 0.00 4.26
44 45 3.926821 TCGGTTTTGGTTAATTGCTCC 57.073 42.857 0.00 0.00 0.00 4.70
45 46 3.223435 TCGGTTTTGGTTAATTGCTCCA 58.777 40.909 0.00 0.00 0.00 3.86
46 47 3.254657 TCGGTTTTGGTTAATTGCTCCAG 59.745 43.478 0.00 0.00 32.63 3.86
47 48 3.325870 GGTTTTGGTTAATTGCTCCAGC 58.674 45.455 0.00 0.00 42.50 4.85
48 49 3.006859 GGTTTTGGTTAATTGCTCCAGCT 59.993 43.478 0.00 0.00 42.66 4.24
49 50 4.237724 GTTTTGGTTAATTGCTCCAGCTC 58.762 43.478 0.00 0.00 42.66 4.09
50 51 3.439857 TTGGTTAATTGCTCCAGCTCT 57.560 42.857 0.00 0.00 42.66 4.09
51 52 3.439857 TGGTTAATTGCTCCAGCTCTT 57.560 42.857 0.00 0.00 42.66 2.85
52 53 3.766545 TGGTTAATTGCTCCAGCTCTTT 58.233 40.909 0.00 0.00 42.66 2.52
53 54 4.151883 TGGTTAATTGCTCCAGCTCTTTT 58.848 39.130 0.00 0.00 42.66 2.27
54 55 4.588528 TGGTTAATTGCTCCAGCTCTTTTT 59.411 37.500 0.00 0.00 42.66 1.94
73 74 5.713792 TTTTTGGGATGTTAATTGCTCGA 57.286 34.783 0.00 0.00 0.00 4.04
74 75 5.713792 TTTTGGGATGTTAATTGCTCGAA 57.286 34.783 0.00 0.00 0.00 3.71
75 76 4.695217 TTGGGATGTTAATTGCTCGAAC 57.305 40.909 0.00 0.00 0.00 3.95
76 77 3.950397 TGGGATGTTAATTGCTCGAACT 58.050 40.909 0.00 0.00 0.00 3.01
77 78 5.092554 TGGGATGTTAATTGCTCGAACTA 57.907 39.130 0.00 0.00 0.00 2.24
78 79 5.116180 TGGGATGTTAATTGCTCGAACTAG 58.884 41.667 0.00 0.00 0.00 2.57
79 80 4.511826 GGGATGTTAATTGCTCGAACTAGG 59.488 45.833 0.00 0.00 0.00 3.02
80 81 5.357257 GGATGTTAATTGCTCGAACTAGGA 58.643 41.667 0.00 0.00 0.00 2.94
81 82 5.992217 GGATGTTAATTGCTCGAACTAGGAT 59.008 40.000 0.00 0.00 0.00 3.24
82 83 6.073548 GGATGTTAATTGCTCGAACTAGGATG 60.074 42.308 0.00 0.00 0.00 3.51
83 84 5.116180 TGTTAATTGCTCGAACTAGGATGG 58.884 41.667 0.00 0.00 0.00 3.51
84 85 2.918712 ATTGCTCGAACTAGGATGGG 57.081 50.000 0.00 0.00 0.00 4.00
85 86 1.860641 TTGCTCGAACTAGGATGGGA 58.139 50.000 0.00 0.00 0.00 4.37
86 87 1.860641 TGCTCGAACTAGGATGGGAA 58.139 50.000 0.00 0.00 0.00 3.97
87 88 2.184533 TGCTCGAACTAGGATGGGAAA 58.815 47.619 0.00 0.00 0.00 3.13
88 89 2.168521 TGCTCGAACTAGGATGGGAAAG 59.831 50.000 0.00 0.00 0.00 2.62
89 90 2.827652 CTCGAACTAGGATGGGAAAGC 58.172 52.381 0.00 0.00 0.00 3.51
90 91 2.168521 CTCGAACTAGGATGGGAAAGCA 59.831 50.000 0.00 0.00 0.00 3.91
91 92 2.168521 TCGAACTAGGATGGGAAAGCAG 59.831 50.000 0.00 0.00 0.00 4.24
92 93 2.293170 GAACTAGGATGGGAAAGCAGC 58.707 52.381 0.00 0.00 0.00 5.25
93 94 1.289160 ACTAGGATGGGAAAGCAGCA 58.711 50.000 0.00 0.00 0.00 4.41
94 95 1.635487 ACTAGGATGGGAAAGCAGCAA 59.365 47.619 0.00 0.00 0.00 3.91
95 96 2.295885 CTAGGATGGGAAAGCAGCAAG 58.704 52.381 0.00 0.00 0.00 4.01
96 97 0.407139 AGGATGGGAAAGCAGCAAGT 59.593 50.000 0.00 0.00 0.00 3.16
97 98 1.203100 AGGATGGGAAAGCAGCAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
98 99 1.620323 GGATGGGAAAGCAGCAAGTTT 59.380 47.619 0.00 0.00 0.00 2.66
99 100 2.353109 GGATGGGAAAGCAGCAAGTTTC 60.353 50.000 0.00 0.00 32.79 2.78
100 101 2.071778 TGGGAAAGCAGCAAGTTTCT 57.928 45.000 0.00 0.00 33.85 2.52
101 102 1.682854 TGGGAAAGCAGCAAGTTTCTG 59.317 47.619 0.00 0.00 33.85 3.02
102 103 1.000171 GGGAAAGCAGCAAGTTTCTGG 60.000 52.381 4.66 0.00 33.85 3.86
103 104 1.683385 GGAAAGCAGCAAGTTTCTGGT 59.317 47.619 1.13 1.13 43.28 4.00
104 105 2.544486 GGAAAGCAGCAAGTTTCTGGTG 60.544 50.000 7.99 0.00 45.54 4.17
105 106 1.035139 AAGCAGCAAGTTTCTGGTGG 58.965 50.000 7.99 0.00 43.49 4.61
106 107 0.825010 AGCAGCAAGTTTCTGGTGGG 60.825 55.000 6.42 0.00 43.49 4.61
107 108 1.809567 GCAGCAAGTTTCTGGTGGGG 61.810 60.000 4.66 0.00 43.49 4.96
108 109 1.531602 AGCAAGTTTCTGGTGGGGC 60.532 57.895 0.00 0.00 0.00 5.80
109 110 2.919494 GCAAGTTTCTGGTGGGGCG 61.919 63.158 0.00 0.00 0.00 6.13
110 111 2.115266 AAGTTTCTGGTGGGGCGG 59.885 61.111 0.00 0.00 0.00 6.13
111 112 2.763645 AAGTTTCTGGTGGGGCGGT 61.764 57.895 0.00 0.00 0.00 5.68
112 113 2.203437 GTTTCTGGTGGGGCGGTT 60.203 61.111 0.00 0.00 0.00 4.44
113 114 2.203422 TTTCTGGTGGGGCGGTTG 60.203 61.111 0.00 0.00 0.00 3.77
114 115 3.063197 TTTCTGGTGGGGCGGTTGT 62.063 57.895 0.00 0.00 0.00 3.32
115 116 2.575455 TTTCTGGTGGGGCGGTTGTT 62.575 55.000 0.00 0.00 0.00 2.83
116 117 1.706995 TTCTGGTGGGGCGGTTGTTA 61.707 55.000 0.00 0.00 0.00 2.41
117 118 1.969589 CTGGTGGGGCGGTTGTTAC 60.970 63.158 0.00 0.00 0.00 2.50
118 119 2.113562 GGTGGGGCGGTTGTTACA 59.886 61.111 0.00 0.00 0.00 2.41
119 120 1.969589 GGTGGGGCGGTTGTTACAG 60.970 63.158 0.00 0.00 0.00 2.74
120 121 1.969589 GTGGGGCGGTTGTTACAGG 60.970 63.158 0.00 0.00 0.00 4.00
121 122 2.433004 GGGGCGGTTGTTACAGGT 59.567 61.111 0.00 0.00 0.00 4.00
122 123 1.228337 GGGGCGGTTGTTACAGGTT 60.228 57.895 0.00 0.00 0.00 3.50
123 124 0.824595 GGGGCGGTTGTTACAGGTTT 60.825 55.000 0.00 0.00 0.00 3.27
124 125 0.594602 GGGCGGTTGTTACAGGTTTC 59.405 55.000 0.00 0.00 0.00 2.78
125 126 0.594602 GGCGGTTGTTACAGGTTTCC 59.405 55.000 0.00 0.00 0.00 3.13
126 127 1.601166 GCGGTTGTTACAGGTTTCCT 58.399 50.000 0.00 0.00 0.00 3.36
127 128 1.951602 GCGGTTGTTACAGGTTTCCTT 59.048 47.619 0.00 0.00 0.00 3.36
128 129 2.031420 GCGGTTGTTACAGGTTTCCTTC 60.031 50.000 0.00 0.00 0.00 3.46
129 130 3.473625 CGGTTGTTACAGGTTTCCTTCT 58.526 45.455 0.00 0.00 0.00 2.85
130 131 3.881089 CGGTTGTTACAGGTTTCCTTCTT 59.119 43.478 0.00 0.00 0.00 2.52
131 132 4.024302 CGGTTGTTACAGGTTTCCTTCTTC 60.024 45.833 0.00 0.00 0.00 2.87
132 133 4.277672 GGTTGTTACAGGTTTCCTTCTTCC 59.722 45.833 0.00 0.00 0.00 3.46
133 134 5.131067 GTTGTTACAGGTTTCCTTCTTCCT 58.869 41.667 0.00 0.00 0.00 3.36
134 135 5.382664 TGTTACAGGTTTCCTTCTTCCTT 57.617 39.130 0.00 0.00 0.00 3.36
135 136 5.762279 TGTTACAGGTTTCCTTCTTCCTTT 58.238 37.500 0.00 0.00 0.00 3.11
136 137 5.826208 TGTTACAGGTTTCCTTCTTCCTTTC 59.174 40.000 0.00 0.00 0.00 2.62
137 138 4.519906 ACAGGTTTCCTTCTTCCTTTCA 57.480 40.909 0.00 0.00 0.00 2.69
138 139 4.207955 ACAGGTTTCCTTCTTCCTTTCAC 58.792 43.478 0.00 0.00 0.00 3.18
139 140 3.570125 CAGGTTTCCTTCTTCCTTTCACC 59.430 47.826 0.00 0.00 0.00 4.02
140 141 2.891580 GGTTTCCTTCTTCCTTTCACCC 59.108 50.000 0.00 0.00 0.00 4.61
141 142 3.436615 GGTTTCCTTCTTCCTTTCACCCT 60.437 47.826 0.00 0.00 0.00 4.34
142 143 4.215908 GTTTCCTTCTTCCTTTCACCCTT 58.784 43.478 0.00 0.00 0.00 3.95
143 144 3.790089 TCCTTCTTCCTTTCACCCTTC 57.210 47.619 0.00 0.00 0.00 3.46
144 145 2.375509 TCCTTCTTCCTTTCACCCTTCC 59.624 50.000 0.00 0.00 0.00 3.46
145 146 2.427506 CTTCTTCCTTTCACCCTTCCG 58.572 52.381 0.00 0.00 0.00 4.30
146 147 0.690762 TCTTCCTTTCACCCTTCCGG 59.309 55.000 0.00 0.00 37.81 5.14
147 148 0.690762 CTTCCTTTCACCCTTCCGGA 59.309 55.000 0.00 0.00 34.64 5.14
148 149 1.073284 CTTCCTTTCACCCTTCCGGAA 59.927 52.381 17.73 17.73 34.64 4.30
149 150 1.142060 TCCTTTCACCCTTCCGGAAA 58.858 50.000 19.39 0.00 34.64 3.13
150 151 1.708551 TCCTTTCACCCTTCCGGAAAT 59.291 47.619 19.39 3.76 34.64 2.17
151 152 1.818674 CCTTTCACCCTTCCGGAAATG 59.181 52.381 19.39 16.18 34.64 2.32
152 153 1.818674 CTTTCACCCTTCCGGAAATGG 59.181 52.381 24.20 24.20 34.64 3.16
153 154 0.039035 TTCACCCTTCCGGAAATGGG 59.961 55.000 30.84 30.84 44.89 4.00
154 155 2.052104 CACCCTTCCGGAAATGGGC 61.052 63.158 31.88 0.00 43.25 5.36
155 156 2.442087 CCCTTCCGGAAATGGGCC 60.442 66.667 24.43 0.00 32.49 5.80
156 157 2.683475 CCTTCCGGAAATGGGCCT 59.317 61.111 19.39 0.00 0.00 5.19
157 158 1.453928 CCTTCCGGAAATGGGCCTC 60.454 63.158 19.39 0.00 0.00 4.70
158 159 1.819632 CTTCCGGAAATGGGCCTCG 60.820 63.158 19.39 0.00 0.00 4.63
159 160 2.252072 CTTCCGGAAATGGGCCTCGA 62.252 60.000 19.39 0.00 0.00 4.04
160 161 1.632018 TTCCGGAAATGGGCCTCGAT 61.632 55.000 16.28 0.00 0.00 3.59
161 162 0.761323 TCCGGAAATGGGCCTCGATA 60.761 55.000 0.00 0.00 0.00 2.92
162 163 0.320771 CCGGAAATGGGCCTCGATAG 60.321 60.000 4.53 0.00 0.00 2.08
163 164 0.393077 CGGAAATGGGCCTCGATAGT 59.607 55.000 4.53 0.00 37.40 2.12
164 165 1.873903 CGGAAATGGGCCTCGATAGTG 60.874 57.143 4.53 0.00 37.40 2.74
165 166 1.141053 GGAAATGGGCCTCGATAGTGT 59.859 52.381 4.53 0.00 37.40 3.55
166 167 2.421529 GGAAATGGGCCTCGATAGTGTT 60.422 50.000 4.53 0.00 37.40 3.32
167 168 2.332063 AATGGGCCTCGATAGTGTTG 57.668 50.000 4.53 0.00 37.40 3.33
168 169 0.179045 ATGGGCCTCGATAGTGTTGC 60.179 55.000 4.53 0.00 37.40 4.17
169 170 1.220749 GGGCCTCGATAGTGTTGCA 59.779 57.895 0.84 0.00 37.40 4.08
170 171 1.090052 GGGCCTCGATAGTGTTGCAC 61.090 60.000 0.84 0.00 37.40 4.57
171 172 0.391130 GGCCTCGATAGTGTTGCACA 60.391 55.000 0.00 0.00 36.74 4.57
172 173 1.656652 GCCTCGATAGTGTTGCACAT 58.343 50.000 2.01 0.00 36.74 3.21
173 174 1.328680 GCCTCGATAGTGTTGCACATG 59.671 52.381 2.01 0.00 36.74 3.21
174 175 1.935873 CCTCGATAGTGTTGCACATGG 59.064 52.381 0.00 0.00 36.74 3.66
175 176 1.328680 CTCGATAGTGTTGCACATGGC 59.671 52.381 0.00 0.00 36.74 4.40
176 177 0.378257 CGATAGTGTTGCACATGGCC 59.622 55.000 0.00 0.00 43.89 5.36
177 178 1.462616 GATAGTGTTGCACATGGCCA 58.537 50.000 8.56 8.56 43.89 5.36
178 179 2.026641 GATAGTGTTGCACATGGCCAT 58.973 47.619 14.09 14.09 43.89 4.40
179 180 1.462616 TAGTGTTGCACATGGCCATC 58.537 50.000 17.61 5.48 43.89 3.51
180 181 0.540133 AGTGTTGCACATGGCCATCA 60.540 50.000 17.61 8.59 43.89 3.07
181 182 0.108992 GTGTTGCACATGGCCATCAG 60.109 55.000 17.61 12.58 43.89 2.90
182 183 0.540133 TGTTGCACATGGCCATCAGT 60.540 50.000 17.61 9.37 43.89 3.41
183 184 1.271817 TGTTGCACATGGCCATCAGTA 60.272 47.619 17.61 8.02 43.89 2.74
184 185 1.402968 GTTGCACATGGCCATCAGTAG 59.597 52.381 17.61 6.89 43.89 2.57
185 186 0.620030 TGCACATGGCCATCAGTAGT 59.380 50.000 17.61 7.65 43.89 2.73
186 187 1.019673 GCACATGGCCATCAGTAGTG 58.980 55.000 22.63 22.63 36.11 2.74
187 188 1.679944 GCACATGGCCATCAGTAGTGT 60.680 52.381 25.61 15.44 36.11 3.55
188 189 2.715046 CACATGGCCATCAGTAGTGTT 58.285 47.619 17.61 0.00 0.00 3.32
189 190 2.679837 CACATGGCCATCAGTAGTGTTC 59.320 50.000 17.61 0.00 0.00 3.18
190 191 2.573462 ACATGGCCATCAGTAGTGTTCT 59.427 45.455 17.61 0.00 0.00 3.01
191 192 3.201290 CATGGCCATCAGTAGTGTTCTC 58.799 50.000 17.61 0.00 0.00 2.87
192 193 2.256306 TGGCCATCAGTAGTGTTCTCA 58.744 47.619 0.00 0.00 0.00 3.27
193 194 2.028112 TGGCCATCAGTAGTGTTCTCAC 60.028 50.000 0.00 0.00 44.15 3.51
194 195 2.028112 GGCCATCAGTAGTGTTCTCACA 60.028 50.000 0.00 0.00 46.01 3.58
195 196 3.557054 GGCCATCAGTAGTGTTCTCACAA 60.557 47.826 0.00 0.00 46.01 3.33
196 197 4.065088 GCCATCAGTAGTGTTCTCACAAA 58.935 43.478 0.00 0.00 46.01 2.83
197 198 4.515191 GCCATCAGTAGTGTTCTCACAAAA 59.485 41.667 0.00 0.00 46.01 2.44
198 199 5.182001 GCCATCAGTAGTGTTCTCACAAAAT 59.818 40.000 0.00 0.00 46.01 1.82
199 200 6.294176 GCCATCAGTAGTGTTCTCACAAAATT 60.294 38.462 0.00 0.00 46.01 1.82
200 201 7.651808 CCATCAGTAGTGTTCTCACAAAATTT 58.348 34.615 0.00 0.00 46.01 1.82
201 202 7.805071 CCATCAGTAGTGTTCTCACAAAATTTC 59.195 37.037 0.00 0.00 46.01 2.17
202 203 8.562892 CATCAGTAGTGTTCTCACAAAATTTCT 58.437 33.333 0.00 0.00 46.01 2.52
203 204 8.142994 TCAGTAGTGTTCTCACAAAATTTCTC 57.857 34.615 0.00 0.00 46.01 2.87
204 205 7.768582 TCAGTAGTGTTCTCACAAAATTTCTCA 59.231 33.333 0.00 0.00 46.01 3.27
205 206 8.562892 CAGTAGTGTTCTCACAAAATTTCTCAT 58.437 33.333 0.00 0.00 46.01 2.90
206 207 9.125026 AGTAGTGTTCTCACAAAATTTCTCATT 57.875 29.630 0.00 0.00 46.01 2.57
207 208 9.736023 GTAGTGTTCTCACAAAATTTCTCATTT 57.264 29.630 0.00 0.00 46.01 2.32
209 210 9.305925 AGTGTTCTCACAAAATTTCTCATTTTC 57.694 29.630 0.00 0.00 46.01 2.29
210 211 9.086336 GTGTTCTCACAAAATTTCTCATTTTCA 57.914 29.630 0.00 0.00 43.37 2.69
211 212 9.304731 TGTTCTCACAAAATTTCTCATTTTCAG 57.695 29.630 0.00 0.00 0.00 3.02
212 213 7.935338 TCTCACAAAATTTCTCATTTTCAGC 57.065 32.000 0.00 0.00 0.00 4.26
213 214 6.925165 TCTCACAAAATTTCTCATTTTCAGCC 59.075 34.615 0.00 0.00 0.00 4.85
214 215 6.819284 TCACAAAATTTCTCATTTTCAGCCT 58.181 32.000 0.00 0.00 0.00 4.58
215 216 7.950512 TCACAAAATTTCTCATTTTCAGCCTA 58.049 30.769 0.00 0.00 0.00 3.93
216 217 8.587608 TCACAAAATTTCTCATTTTCAGCCTAT 58.412 29.630 0.00 0.00 0.00 2.57
217 218 8.653338 CACAAAATTTCTCATTTTCAGCCTATG 58.347 33.333 0.00 0.00 0.00 2.23
218 219 8.370182 ACAAAATTTCTCATTTTCAGCCTATGT 58.630 29.630 0.00 0.00 0.00 2.29
219 220 9.859427 CAAAATTTCTCATTTTCAGCCTATGTA 57.141 29.630 0.00 0.00 0.00 2.29
220 221 9.860898 AAAATTTCTCATTTTCAGCCTATGTAC 57.139 29.630 0.00 0.00 0.00 2.90
221 222 6.662414 TTTCTCATTTTCAGCCTATGTACG 57.338 37.500 0.00 0.00 0.00 3.67
222 223 5.339008 TCTCATTTTCAGCCTATGTACGT 57.661 39.130 0.00 0.00 0.00 3.57
223 224 5.730550 TCTCATTTTCAGCCTATGTACGTT 58.269 37.500 0.00 0.00 0.00 3.99
224 225 6.170506 TCTCATTTTCAGCCTATGTACGTTT 58.829 36.000 0.00 0.00 0.00 3.60
225 226 6.653320 TCTCATTTTCAGCCTATGTACGTTTT 59.347 34.615 0.00 0.00 0.00 2.43
226 227 6.837992 TCATTTTCAGCCTATGTACGTTTTC 58.162 36.000 0.00 0.00 0.00 2.29
227 228 6.653320 TCATTTTCAGCCTATGTACGTTTTCT 59.347 34.615 0.00 0.00 0.00 2.52
228 229 6.870971 TTTTCAGCCTATGTACGTTTTCTT 57.129 33.333 0.00 0.00 0.00 2.52
229 230 6.870971 TTTCAGCCTATGTACGTTTTCTTT 57.129 33.333 0.00 0.00 0.00 2.52
230 231 6.870971 TTCAGCCTATGTACGTTTTCTTTT 57.129 33.333 0.00 0.00 0.00 2.27
231 232 6.476243 TCAGCCTATGTACGTTTTCTTTTC 57.524 37.500 0.00 0.00 0.00 2.29
232 233 6.228258 TCAGCCTATGTACGTTTTCTTTTCT 58.772 36.000 0.00 0.00 0.00 2.52
233 234 6.708949 TCAGCCTATGTACGTTTTCTTTTCTT 59.291 34.615 0.00 0.00 0.00 2.52
234 235 7.227910 TCAGCCTATGTACGTTTTCTTTTCTTT 59.772 33.333 0.00 0.00 0.00 2.52
235 236 7.860872 CAGCCTATGTACGTTTTCTTTTCTTTT 59.139 33.333 0.00 0.00 0.00 2.27
236 237 8.410912 AGCCTATGTACGTTTTCTTTTCTTTTT 58.589 29.630 0.00 0.00 0.00 1.94
261 262 9.895138 TTTAGACTGGTTATAGTAAATCAACCC 57.105 33.333 0.00 0.00 39.79 4.11
262 263 6.896883 AGACTGGTTATAGTAAATCAACCCC 58.103 40.000 0.00 0.00 39.79 4.95
263 264 6.677076 AGACTGGTTATAGTAAATCAACCCCT 59.323 38.462 0.00 0.00 39.79 4.79
264 265 6.659824 ACTGGTTATAGTAAATCAACCCCTG 58.340 40.000 0.00 0.00 39.79 4.45
265 266 6.445786 ACTGGTTATAGTAAATCAACCCCTGA 59.554 38.462 0.00 0.00 39.79 3.86
266 267 6.655930 TGGTTATAGTAAATCAACCCCTGAC 58.344 40.000 0.00 0.00 39.79 3.51
267 268 6.215841 TGGTTATAGTAAATCAACCCCTGACA 59.784 38.462 0.00 0.00 39.79 3.58
268 269 6.541278 GGTTATAGTAAATCAACCCCTGACAC 59.459 42.308 0.00 0.00 36.69 3.67
269 270 7.336396 GTTATAGTAAATCAACCCCTGACACT 58.664 38.462 0.00 0.00 36.69 3.55
270 271 8.480501 GTTATAGTAAATCAACCCCTGACACTA 58.519 37.037 0.00 0.00 36.69 2.74
271 272 5.422214 AGTAAATCAACCCCTGACACTAG 57.578 43.478 0.00 0.00 36.69 2.57
272 273 5.091552 AGTAAATCAACCCCTGACACTAGA 58.908 41.667 0.00 0.00 36.69 2.43
273 274 4.559862 AAATCAACCCCTGACACTAGAG 57.440 45.455 0.00 0.00 36.69 2.43
274 275 2.992847 TCAACCCCTGACACTAGAGA 57.007 50.000 0.00 0.00 0.00 3.10
275 276 2.808919 TCAACCCCTGACACTAGAGAG 58.191 52.381 0.00 0.00 0.00 3.20
276 277 2.378886 TCAACCCCTGACACTAGAGAGA 59.621 50.000 0.00 0.00 0.00 3.10
277 278 2.757868 CAACCCCTGACACTAGAGAGAG 59.242 54.545 0.00 0.00 0.00 3.20
278 279 2.280103 ACCCCTGACACTAGAGAGAGA 58.720 52.381 0.00 0.00 0.00 3.10
279 280 2.856231 ACCCCTGACACTAGAGAGAGAT 59.144 50.000 0.00 0.00 0.00 2.75
280 281 4.048600 ACCCCTGACACTAGAGAGAGATA 58.951 47.826 0.00 0.00 0.00 1.98
281 282 4.667858 ACCCCTGACACTAGAGAGAGATAT 59.332 45.833 0.00 0.00 0.00 1.63
282 283 5.222048 ACCCCTGACACTAGAGAGAGATATC 60.222 48.000 0.00 0.00 0.00 1.63
283 284 5.222027 CCCCTGACACTAGAGAGAGATATCA 60.222 48.000 5.32 0.00 0.00 2.15
284 285 6.303054 CCCTGACACTAGAGAGAGATATCAA 58.697 44.000 5.32 0.00 0.00 2.57
285 286 6.775142 CCCTGACACTAGAGAGAGATATCAAA 59.225 42.308 5.32 0.00 0.00 2.69
286 287 7.040478 CCCTGACACTAGAGAGAGATATCAAAG 60.040 44.444 5.32 0.00 0.00 2.77
287 288 7.040478 CCTGACACTAGAGAGAGATATCAAAGG 60.040 44.444 5.32 0.00 0.00 3.11
288 289 7.578203 TGACACTAGAGAGAGATATCAAAGGA 58.422 38.462 5.32 0.00 0.00 3.36
289 290 8.055790 TGACACTAGAGAGAGATATCAAAGGAA 58.944 37.037 5.32 0.00 0.00 3.36
290 291 8.830915 ACACTAGAGAGAGATATCAAAGGAAA 57.169 34.615 5.32 0.00 0.00 3.13
291 292 9.261035 ACACTAGAGAGAGATATCAAAGGAAAA 57.739 33.333 5.32 0.00 0.00 2.29
300 301 9.401058 AGAGATATCAAAGGAAAAACATACAGG 57.599 33.333 5.32 0.00 0.00 4.00
301 302 9.396022 GAGATATCAAAGGAAAAACATACAGGA 57.604 33.333 5.32 0.00 0.00 3.86
302 303 9.401058 AGATATCAAAGGAAAAACATACAGGAG 57.599 33.333 5.32 0.00 0.00 3.69
303 304 6.840780 ATCAAAGGAAAAACATACAGGAGG 57.159 37.500 0.00 0.00 0.00 4.30
304 305 5.076873 TCAAAGGAAAAACATACAGGAGGG 58.923 41.667 0.00 0.00 0.00 4.30
305 306 3.087370 AGGAAAAACATACAGGAGGGC 57.913 47.619 0.00 0.00 0.00 5.19
306 307 2.649816 AGGAAAAACATACAGGAGGGCT 59.350 45.455 0.00 0.00 0.00 5.19
307 308 3.017442 GGAAAAACATACAGGAGGGCTC 58.983 50.000 0.00 0.00 0.00 4.70
320 321 4.097361 GGCTCCCCAACGGTCCTC 62.097 72.222 0.00 0.00 0.00 3.71
321 322 3.003763 GCTCCCCAACGGTCCTCT 61.004 66.667 0.00 0.00 0.00 3.69
322 323 3.020237 GCTCCCCAACGGTCCTCTC 62.020 68.421 0.00 0.00 0.00 3.20
323 324 2.678934 TCCCCAACGGTCCTCTCG 60.679 66.667 0.00 0.00 0.00 4.04
324 325 2.995574 CCCCAACGGTCCTCTCGT 60.996 66.667 0.00 0.00 43.14 4.18
328 329 3.374332 AACGGTCCTCTCGTTCCC 58.626 61.111 0.00 0.00 46.12 3.97
329 330 1.532316 AACGGTCCTCTCGTTCCCA 60.532 57.895 0.00 0.00 46.12 4.37
330 331 1.117142 AACGGTCCTCTCGTTCCCAA 61.117 55.000 0.00 0.00 46.12 4.12
331 332 1.215647 CGGTCCTCTCGTTCCCAAG 59.784 63.158 0.00 0.00 0.00 3.61
332 333 1.079057 GGTCCTCTCGTTCCCAAGC 60.079 63.158 0.00 0.00 0.00 4.01
333 334 1.545706 GGTCCTCTCGTTCCCAAGCT 61.546 60.000 0.00 0.00 0.00 3.74
334 335 0.108567 GTCCTCTCGTTCCCAAGCTC 60.109 60.000 0.00 0.00 0.00 4.09
335 336 1.219393 CCTCTCGTTCCCAAGCTCC 59.781 63.158 0.00 0.00 0.00 4.70
336 337 1.219393 CTCTCGTTCCCAAGCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
337 338 2.245438 CTCTCGTTCCCAAGCTCCCC 62.245 65.000 0.00 0.00 0.00 4.81
338 339 3.327404 TCGTTCCCAAGCTCCCCC 61.327 66.667 0.00 0.00 0.00 5.40
339 340 4.778143 CGTTCCCAAGCTCCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
340 341 4.426313 GTTCCCAAGCTCCCCCGG 62.426 72.222 0.00 0.00 0.00 5.73
351 352 4.506255 CCCCCGGCCTCCAACATC 62.506 72.222 0.00 0.00 0.00 3.06
352 353 4.506255 CCCCGGCCTCCAACATCC 62.506 72.222 0.00 0.00 0.00 3.51
353 354 4.506255 CCCGGCCTCCAACATCCC 62.506 72.222 0.00 0.00 0.00 3.85
354 355 3.727258 CCGGCCTCCAACATCCCA 61.727 66.667 0.00 0.00 0.00 4.37
355 356 2.354729 CGGCCTCCAACATCCCAA 59.645 61.111 0.00 0.00 0.00 4.12
356 357 1.076777 CGGCCTCCAACATCCCAAT 60.077 57.895 0.00 0.00 0.00 3.16
357 358 1.103398 CGGCCTCCAACATCCCAATC 61.103 60.000 0.00 0.00 0.00 2.67
358 359 1.103398 GGCCTCCAACATCCCAATCG 61.103 60.000 0.00 0.00 0.00 3.34
359 360 1.103398 GCCTCCAACATCCCAATCGG 61.103 60.000 0.00 0.00 0.00 4.18
360 361 1.103398 CCTCCAACATCCCAATCGGC 61.103 60.000 0.00 0.00 0.00 5.54
361 362 1.439353 CTCCAACATCCCAATCGGCG 61.439 60.000 0.00 0.00 0.00 6.46
362 363 2.480610 CCAACATCCCAATCGGCGG 61.481 63.158 7.21 0.00 0.00 6.13
363 364 2.828549 AACATCCCAATCGGCGGC 60.829 61.111 7.21 0.00 0.00 6.53
364 365 4.875713 ACATCCCAATCGGCGGCC 62.876 66.667 9.54 9.54 0.00 6.13
440 441 0.884704 CCAGATAACGCCCCCATTCG 60.885 60.000 0.00 0.00 0.00 3.34
456 457 2.234300 TTCGGTCTGCTTCTTTTCGT 57.766 45.000 0.00 0.00 0.00 3.85
459 460 2.069273 CGGTCTGCTTCTTTTCGTGAT 58.931 47.619 0.00 0.00 0.00 3.06
462 463 3.120511 GGTCTGCTTCTTTTCGTGATGTC 60.121 47.826 0.00 0.00 0.00 3.06
465 466 2.475111 TGCTTCTTTTCGTGATGTCGTC 59.525 45.455 0.00 0.00 0.00 4.20
467 468 2.410785 TCTTTTCGTGATGTCGTCGT 57.589 45.000 0.00 0.00 0.00 4.34
469 470 3.117794 TCTTTTCGTGATGTCGTCGTTT 58.882 40.909 0.00 0.00 0.00 3.60
471 472 1.411394 TTCGTGATGTCGTCGTTTCC 58.589 50.000 0.00 0.00 0.00 3.13
472 473 0.726787 TCGTGATGTCGTCGTTTCCG 60.727 55.000 0.00 0.00 0.00 4.30
483 484 1.372499 CGTTTCCGGCTCGTCTTCA 60.372 57.895 0.00 0.00 0.00 3.02
484 485 1.615107 CGTTTCCGGCTCGTCTTCAC 61.615 60.000 0.00 0.00 0.00 3.18
528 529 1.585668 CGCGCTACTTCTGTTGATCTG 59.414 52.381 5.56 0.00 0.00 2.90
534 535 3.045601 ACTTCTGTTGATCTGGAACCG 57.954 47.619 0.00 0.00 0.00 4.44
538 539 1.001974 CTGTTGATCTGGAACCGGACA 59.998 52.381 9.46 2.84 33.73 4.02
539 540 1.001974 TGTTGATCTGGAACCGGACAG 59.998 52.381 9.46 13.85 33.73 3.51
545 546 4.047059 GGAACCGGACAGCGACGA 62.047 66.667 9.46 0.00 0.00 4.20
546 547 2.804090 GAACCGGACAGCGACGAC 60.804 66.667 9.46 0.00 0.00 4.34
548 549 1.915614 GAACCGGACAGCGACGACTA 61.916 60.000 9.46 0.00 0.00 2.59
575 576 1.888018 TGAGGAATCGTCGTCACCC 59.112 57.895 0.00 0.00 42.31 4.61
578 579 2.181021 GAATCGTCGTCACCCGCT 59.819 61.111 0.00 0.00 36.19 5.52
591 592 2.186903 CCGCTCCGTTATGTGGCT 59.813 61.111 0.00 0.00 0.00 4.75
594 595 2.813179 GCTCCGTTATGTGGCTGCG 61.813 63.158 0.00 0.00 0.00 5.18
654 655 0.547075 TTCCTCGGTGGTTGTTTGGA 59.453 50.000 0.00 0.00 37.07 3.53
670 671 4.464597 TGTTTGGAAGGTGTTTTAAGTGCT 59.535 37.500 0.00 0.00 0.00 4.40
676 677 4.164843 AGGTGTTTTAAGTGCTTGGAGA 57.835 40.909 0.00 0.00 0.00 3.71
686 687 3.636231 CTTGGAGACGGGCCACCA 61.636 66.667 4.39 4.40 34.56 4.17
687 688 2.933287 TTGGAGACGGGCCACCAT 60.933 61.111 4.39 0.00 34.56 3.55
694 695 1.134098 AGACGGGCCACCATAAATCTG 60.134 52.381 4.39 0.00 36.13 2.90
707 708 2.496899 AAATCTGAATGCTCCGGTGT 57.503 45.000 0.00 0.00 0.00 4.16
711 712 1.278985 TCTGAATGCTCCGGTGTGATT 59.721 47.619 0.00 1.84 0.00 2.57
721 722 1.299541 CGGTGTGATTAGATGCCACC 58.700 55.000 0.00 0.00 41.69 4.61
738 739 2.358247 CGCTGTTGGCTAACGGGT 60.358 61.111 21.69 0.00 42.30 5.28
786 787 0.108138 CAGATTCGTCACACCCTCCC 60.108 60.000 0.00 0.00 0.00 4.30
789 790 2.765705 ATTCGTCACACCCTCCCCCT 62.766 60.000 0.00 0.00 0.00 4.79
791 792 3.009714 GTCACACCCTCCCCCTCC 61.010 72.222 0.00 0.00 0.00 4.30
810 811 1.765657 GCCTCCCAGATCTGAGCCT 60.766 63.158 24.62 0.00 0.00 4.58
815 816 2.071262 CCAGATCTGAGCCTGGCCT 61.071 63.158 24.62 2.26 42.84 5.19
826 827 3.767806 CTGGCCTCTCTGCTCGCA 61.768 66.667 3.32 0.00 0.00 5.10
897 898 1.880027 CCTTGTGACTTGGCCAACTAC 59.120 52.381 16.05 13.95 0.00 2.73
902 903 0.984995 GACTTGGCCAACTACCCTCT 59.015 55.000 16.05 0.00 0.00 3.69
903 904 0.984995 ACTTGGCCAACTACCCTCTC 59.015 55.000 16.05 0.00 0.00 3.20
906 907 0.714180 TGGCCAACTACCCTCTCCTA 59.286 55.000 0.61 0.00 0.00 2.94
909 910 1.689892 GCCAACTACCCTCTCCTAGCT 60.690 57.143 0.00 0.00 0.00 3.32
922 923 1.439644 CTAGCTCAGTCCCGCTTCC 59.560 63.158 0.00 0.00 37.68 3.46
941 942 1.628340 CCCTGGCGGAATATACATCCA 59.372 52.381 0.00 0.00 36.74 3.41
960 961 2.190578 GGGGATCCAGTTCTGCGG 59.809 66.667 15.23 0.00 0.00 5.69
994 995 0.105453 AGGTATCATCTCCCGCACCT 60.105 55.000 0.00 0.00 0.00 4.00
996 997 0.318762 GTATCATCTCCCGCACCTCC 59.681 60.000 0.00 0.00 0.00 4.30
997 998 0.105709 TATCATCTCCCGCACCTCCA 60.106 55.000 0.00 0.00 0.00 3.86
1014 1015 3.890145 CAGGATGGATGAGCTCGAG 57.110 57.895 8.45 8.45 0.00 4.04
1026 1027 1.153549 GCTCGAGGCGGATTTCAGT 60.154 57.895 15.58 0.00 0.00 3.41
1031 1032 1.787155 CGAGGCGGATTTCAGTAATCG 59.213 52.381 0.00 0.00 43.01 3.34
1033 1034 0.232303 GGCGGATTTCAGTAATCGCG 59.768 55.000 0.00 0.00 43.01 5.87
1035 1036 0.232303 CGGATTTCAGTAATCGCGCC 59.768 55.000 0.00 0.00 43.01 6.53
1036 1037 1.583054 GGATTTCAGTAATCGCGCCT 58.417 50.000 0.00 0.00 43.01 5.52
1041 1042 0.458260 TCAGTAATCGCGCCTTGCTA 59.542 50.000 0.00 0.00 43.27 3.49
1052 1053 1.302752 CCTTGCTAGCCACTGTGCA 60.303 57.895 13.29 0.00 0.00 4.57
1102 1103 0.032813 CATGGTCCAATCCCTGGCTT 60.033 55.000 0.00 0.00 45.98 4.35
1109 1110 0.548031 CAATCCCTGGCTTGGCTCTA 59.452 55.000 0.00 0.00 0.00 2.43
1110 1111 1.144503 CAATCCCTGGCTTGGCTCTAT 59.855 52.381 0.00 0.00 0.00 1.98
1181 1182 2.171237 TCTTCATCACATTCGCCTCCAT 59.829 45.455 0.00 0.00 0.00 3.41
1291 1292 2.617274 GCGAGCAGCGGGAAACTTT 61.617 57.895 1.23 0.00 41.29 2.66
1293 1294 1.081175 GAGCAGCGGGAAACTTTGC 60.081 57.895 0.00 0.00 35.09 3.68
1320 1321 1.826720 TGCAAGATTGGATTTGAGGGC 59.173 47.619 0.00 0.00 0.00 5.19
1326 1327 0.252148 TTGGATTTGAGGGCATGCCA 60.252 50.000 36.56 17.73 37.98 4.92
1534 1535 1.143073 ACAAGGACTTTCCGCTTTCCT 59.857 47.619 0.00 0.00 42.75 3.36
1587 1588 1.821061 CTCTTGTCCACCCGCTCACT 61.821 60.000 0.00 0.00 0.00 3.41
1968 1969 4.423209 GGTGGCTCCCCCTCTCCT 62.423 72.222 0.00 0.00 0.00 3.69
2002 2205 4.351938 CGGTCGTGGGTTCTGCGA 62.352 66.667 0.00 0.00 0.00 5.10
2092 2295 4.386951 CGCCCACGGTGGATGTGA 62.387 66.667 28.36 0.00 40.96 3.58
2093 2296 2.746277 GCCCACGGTGGATGTGAC 60.746 66.667 28.36 6.63 40.96 3.67
2094 2297 2.434185 CCCACGGTGGATGTGACG 60.434 66.667 28.36 5.84 40.96 4.35
2095 2298 3.118454 CCACGGTGGATGTGACGC 61.118 66.667 22.77 0.00 40.96 5.19
2096 2299 2.356913 CACGGTGGATGTGACGCA 60.357 61.111 0.00 0.00 39.73 5.24
2097 2300 1.741401 CACGGTGGATGTGACGCAT 60.741 57.895 0.00 0.00 39.73 4.73
2105 2308 2.161831 ATGTGACGCATCAACACGG 58.838 52.632 0.00 0.00 36.31 4.94
2106 2309 0.602638 ATGTGACGCATCAACACGGT 60.603 50.000 0.00 0.00 36.31 4.83
2107 2310 1.204062 GTGACGCATCAACACGGTG 59.796 57.895 6.58 6.58 36.31 4.94
2146 2374 0.246360 CGGTGCACATGGACACTCTA 59.754 55.000 20.43 0.00 38.19 2.43
2281 2509 2.357034 GAGTCACGCTCCGCCAAA 60.357 61.111 0.00 0.00 38.27 3.28
2329 2557 1.248785 ATCGGAGGCGTGTACACAGT 61.249 55.000 24.98 9.01 0.00 3.55
2410 2638 4.289101 TGGCATGCCCAGCACTGT 62.289 61.111 33.44 0.00 43.04 3.55
2444 2672 0.742635 GTAGTGCCTTCCTCAGCTGC 60.743 60.000 9.47 0.00 0.00 5.25
2464 2692 0.970427 TGGTGCTATGGAGACGCTGA 60.970 55.000 0.00 0.00 0.00 4.26
2516 2744 3.882025 GGCTCTGAAGTTGCCGAG 58.118 61.111 0.00 0.00 37.11 4.63
2755 2983 3.093057 AGACGCAAGAAGACTCTACCAT 58.907 45.455 0.00 0.00 43.62 3.55
2895 3123 0.463654 AACAGGTGACGCAGAAAGCA 60.464 50.000 0.00 0.00 46.13 3.91
2998 3226 4.792068 TGAAGTGGACTTTGATGAACCTT 58.208 39.130 0.00 0.00 36.11 3.50
3023 3251 1.143684 TGAGGGCTTCAGTGCTTTCTT 59.856 47.619 0.00 0.00 0.00 2.52
3077 3305 2.700897 AGTGTCCTGTACTGCTCTTGTT 59.299 45.455 0.00 0.00 0.00 2.83
3115 3343 1.276138 TCATGGCGATGTCAGAGTGTT 59.724 47.619 8.66 0.00 0.00 3.32
3212 3440 4.989279 ACATTTCACTTGCTTGTGTTCT 57.011 36.364 8.92 0.00 38.90 3.01
3476 3704 2.982488 AGGACAAAGTCAGATTCCTGGT 59.018 45.455 0.00 0.00 40.76 4.00
3662 3908 3.548745 CTGGTGTAATGATCAGGAGCA 57.451 47.619 0.09 0.05 0.00 4.26
3706 3952 3.751518 AGGGTGTTGTTCAATAGTGACC 58.248 45.455 0.00 0.00 31.90 4.02
3790 4036 0.536260 CCTTCTCCTGACCTGCTCTG 59.464 60.000 0.00 0.00 0.00 3.35
3805 4051 1.353694 GCTCTGGGGATATGCCAAGAT 59.646 52.381 19.92 0.00 38.95 2.40
3841 4087 6.038492 TCGTTTCGAGAATTTTTGGGTTAAGT 59.962 34.615 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.331168 CCAAAACCGATGCAAACTGAAAAA 59.669 37.500 0.00 0.00 0.00 1.94
11 12 3.868077 CCAAAACCGATGCAAACTGAAAA 59.132 39.130 0.00 0.00 0.00 2.29
12 13 3.118956 ACCAAAACCGATGCAAACTGAAA 60.119 39.130 0.00 0.00 0.00 2.69
13 14 2.428890 ACCAAAACCGATGCAAACTGAA 59.571 40.909 0.00 0.00 0.00 3.02
14 15 2.028130 ACCAAAACCGATGCAAACTGA 58.972 42.857 0.00 0.00 0.00 3.41
15 16 2.507339 ACCAAAACCGATGCAAACTG 57.493 45.000 0.00 0.00 0.00 3.16
16 17 4.657436 TTAACCAAAACCGATGCAAACT 57.343 36.364 0.00 0.00 0.00 2.66
17 18 5.674989 CAATTAACCAAAACCGATGCAAAC 58.325 37.500 0.00 0.00 0.00 2.93
18 19 4.212214 GCAATTAACCAAAACCGATGCAAA 59.788 37.500 0.00 0.00 0.00 3.68
19 20 3.743396 GCAATTAACCAAAACCGATGCAA 59.257 39.130 0.00 0.00 0.00 4.08
20 21 3.006323 AGCAATTAACCAAAACCGATGCA 59.994 39.130 0.00 0.00 33.89 3.96
21 22 3.584834 AGCAATTAACCAAAACCGATGC 58.415 40.909 0.00 0.00 0.00 3.91
22 23 4.173256 GGAGCAATTAACCAAAACCGATG 58.827 43.478 0.00 0.00 0.00 3.84
23 24 3.829601 TGGAGCAATTAACCAAAACCGAT 59.170 39.130 0.00 0.00 0.00 4.18
24 25 3.223435 TGGAGCAATTAACCAAAACCGA 58.777 40.909 0.00 0.00 0.00 4.69
25 26 3.574614 CTGGAGCAATTAACCAAAACCG 58.425 45.455 0.00 0.00 33.14 4.44
26 27 3.006859 AGCTGGAGCAATTAACCAAAACC 59.993 43.478 0.65 0.00 45.16 3.27
27 28 4.021981 AGAGCTGGAGCAATTAACCAAAAC 60.022 41.667 0.00 0.00 45.16 2.43
28 29 4.151883 AGAGCTGGAGCAATTAACCAAAA 58.848 39.130 0.00 0.00 45.16 2.44
29 30 3.766545 AGAGCTGGAGCAATTAACCAAA 58.233 40.909 0.00 0.00 45.16 3.28
30 31 3.439857 AGAGCTGGAGCAATTAACCAA 57.560 42.857 0.00 0.00 45.16 3.67
31 32 3.439857 AAGAGCTGGAGCAATTAACCA 57.560 42.857 0.00 0.00 45.16 3.67
32 33 4.790765 AAAAGAGCTGGAGCAATTAACC 57.209 40.909 0.00 0.00 45.16 2.85
51 52 5.713792 TCGAGCAATTAACATCCCAAAAA 57.286 34.783 0.00 0.00 0.00 1.94
52 53 5.242838 AGTTCGAGCAATTAACATCCCAAAA 59.757 36.000 1.01 0.00 0.00 2.44
53 54 4.764823 AGTTCGAGCAATTAACATCCCAAA 59.235 37.500 1.01 0.00 0.00 3.28
54 55 4.331968 AGTTCGAGCAATTAACATCCCAA 58.668 39.130 1.01 0.00 0.00 4.12
55 56 3.950397 AGTTCGAGCAATTAACATCCCA 58.050 40.909 1.01 0.00 0.00 4.37
56 57 4.511826 CCTAGTTCGAGCAATTAACATCCC 59.488 45.833 1.01 0.00 0.00 3.85
57 58 5.357257 TCCTAGTTCGAGCAATTAACATCC 58.643 41.667 1.01 0.00 0.00 3.51
58 59 6.073548 CCATCCTAGTTCGAGCAATTAACATC 60.074 42.308 1.01 0.00 0.00 3.06
59 60 5.760253 CCATCCTAGTTCGAGCAATTAACAT 59.240 40.000 1.01 0.00 0.00 2.71
60 61 5.116180 CCATCCTAGTTCGAGCAATTAACA 58.884 41.667 1.01 0.00 0.00 2.41
61 62 4.511826 CCCATCCTAGTTCGAGCAATTAAC 59.488 45.833 1.01 0.00 0.00 2.01
62 63 4.407621 TCCCATCCTAGTTCGAGCAATTAA 59.592 41.667 1.01 0.00 0.00 1.40
63 64 3.964688 TCCCATCCTAGTTCGAGCAATTA 59.035 43.478 1.01 0.00 0.00 1.40
64 65 2.771943 TCCCATCCTAGTTCGAGCAATT 59.228 45.455 1.01 0.00 0.00 2.32
65 66 2.398588 TCCCATCCTAGTTCGAGCAAT 58.601 47.619 1.01 0.00 0.00 3.56
66 67 1.860641 TCCCATCCTAGTTCGAGCAA 58.139 50.000 1.01 0.00 0.00 3.91
67 68 1.860641 TTCCCATCCTAGTTCGAGCA 58.139 50.000 1.01 0.00 0.00 4.26
68 69 2.827652 CTTTCCCATCCTAGTTCGAGC 58.172 52.381 0.00 0.00 0.00 5.03
69 70 2.168521 TGCTTTCCCATCCTAGTTCGAG 59.831 50.000 0.00 0.00 0.00 4.04
70 71 2.168521 CTGCTTTCCCATCCTAGTTCGA 59.831 50.000 0.00 0.00 0.00 3.71
71 72 2.555199 CTGCTTTCCCATCCTAGTTCG 58.445 52.381 0.00 0.00 0.00 3.95
72 73 2.293170 GCTGCTTTCCCATCCTAGTTC 58.707 52.381 0.00 0.00 0.00 3.01
73 74 1.635487 TGCTGCTTTCCCATCCTAGTT 59.365 47.619 0.00 0.00 0.00 2.24
74 75 1.289160 TGCTGCTTTCCCATCCTAGT 58.711 50.000 0.00 0.00 0.00 2.57
75 76 2.295885 CTTGCTGCTTTCCCATCCTAG 58.704 52.381 0.00 0.00 0.00 3.02
76 77 1.635487 ACTTGCTGCTTTCCCATCCTA 59.365 47.619 0.00 0.00 0.00 2.94
77 78 0.407139 ACTTGCTGCTTTCCCATCCT 59.593 50.000 0.00 0.00 0.00 3.24
78 79 1.260544 AACTTGCTGCTTTCCCATCC 58.739 50.000 0.00 0.00 0.00 3.51
79 80 2.560105 AGAAACTTGCTGCTTTCCCATC 59.440 45.455 0.00 0.00 0.00 3.51
80 81 2.298163 CAGAAACTTGCTGCTTTCCCAT 59.702 45.455 0.00 0.00 0.00 4.00
81 82 1.682854 CAGAAACTTGCTGCTTTCCCA 59.317 47.619 0.00 0.00 0.00 4.37
82 83 1.000171 CCAGAAACTTGCTGCTTTCCC 60.000 52.381 0.00 0.00 32.06 3.97
83 84 1.683385 ACCAGAAACTTGCTGCTTTCC 59.317 47.619 0.00 0.00 32.06 3.13
84 85 2.544486 CCACCAGAAACTTGCTGCTTTC 60.544 50.000 0.00 2.96 32.06 2.62
85 86 1.410153 CCACCAGAAACTTGCTGCTTT 59.590 47.619 0.00 0.00 32.06 3.51
86 87 1.035139 CCACCAGAAACTTGCTGCTT 58.965 50.000 0.00 0.00 32.06 3.91
87 88 0.825010 CCCACCAGAAACTTGCTGCT 60.825 55.000 0.00 0.00 32.06 4.24
88 89 1.662044 CCCACCAGAAACTTGCTGC 59.338 57.895 0.00 0.00 32.06 5.25
89 90 1.809567 GCCCCACCAGAAACTTGCTG 61.810 60.000 0.00 0.00 0.00 4.41
90 91 1.531602 GCCCCACCAGAAACTTGCT 60.532 57.895 0.00 0.00 0.00 3.91
91 92 2.919494 CGCCCCACCAGAAACTTGC 61.919 63.158 0.00 0.00 0.00 4.01
92 93 2.268076 CCGCCCCACCAGAAACTTG 61.268 63.158 0.00 0.00 0.00 3.16
93 94 2.115266 CCGCCCCACCAGAAACTT 59.885 61.111 0.00 0.00 0.00 2.66
94 95 2.763645 AACCGCCCCACCAGAAACT 61.764 57.895 0.00 0.00 0.00 2.66
95 96 2.203437 AACCGCCCCACCAGAAAC 60.203 61.111 0.00 0.00 0.00 2.78
96 97 2.203422 CAACCGCCCCACCAGAAA 60.203 61.111 0.00 0.00 0.00 2.52
97 98 1.706995 TAACAACCGCCCCACCAGAA 61.707 55.000 0.00 0.00 0.00 3.02
98 99 2.148052 TAACAACCGCCCCACCAGA 61.148 57.895 0.00 0.00 0.00 3.86
99 100 1.969589 GTAACAACCGCCCCACCAG 60.970 63.158 0.00 0.00 0.00 4.00
100 101 2.113562 GTAACAACCGCCCCACCA 59.886 61.111 0.00 0.00 0.00 4.17
101 102 1.969589 CTGTAACAACCGCCCCACC 60.970 63.158 0.00 0.00 0.00 4.61
102 103 1.969589 CCTGTAACAACCGCCCCAC 60.970 63.158 0.00 0.00 0.00 4.61
103 104 1.997256 AACCTGTAACAACCGCCCCA 61.997 55.000 0.00 0.00 0.00 4.96
104 105 0.824595 AAACCTGTAACAACCGCCCC 60.825 55.000 0.00 0.00 0.00 5.80
105 106 0.594602 GAAACCTGTAACAACCGCCC 59.405 55.000 0.00 0.00 0.00 6.13
106 107 0.594602 GGAAACCTGTAACAACCGCC 59.405 55.000 0.00 0.00 0.00 6.13
107 108 1.601166 AGGAAACCTGTAACAACCGC 58.399 50.000 0.00 0.00 29.57 5.68
108 109 3.473625 AGAAGGAAACCTGTAACAACCG 58.526 45.455 0.00 0.00 32.13 4.44
109 110 4.277672 GGAAGAAGGAAACCTGTAACAACC 59.722 45.833 0.00 0.00 32.13 3.77
110 111 5.131067 AGGAAGAAGGAAACCTGTAACAAC 58.869 41.667 0.00 0.00 32.13 3.32
111 112 5.382664 AGGAAGAAGGAAACCTGTAACAA 57.617 39.130 0.00 0.00 32.13 2.83
112 113 5.382664 AAGGAAGAAGGAAACCTGTAACA 57.617 39.130 0.00 0.00 32.13 2.41
113 114 5.826208 TGAAAGGAAGAAGGAAACCTGTAAC 59.174 40.000 0.00 0.00 32.13 2.50
114 115 5.826208 GTGAAAGGAAGAAGGAAACCTGTAA 59.174 40.000 0.00 0.00 32.13 2.41
115 116 5.374071 GTGAAAGGAAGAAGGAAACCTGTA 58.626 41.667 0.00 0.00 32.13 2.74
116 117 4.207955 GTGAAAGGAAGAAGGAAACCTGT 58.792 43.478 0.00 0.00 32.13 4.00
117 118 3.570125 GGTGAAAGGAAGAAGGAAACCTG 59.430 47.826 0.00 0.00 32.13 4.00
118 119 3.436615 GGGTGAAAGGAAGAAGGAAACCT 60.437 47.826 0.00 0.00 33.87 3.50
119 120 2.891580 GGGTGAAAGGAAGAAGGAAACC 59.108 50.000 0.00 0.00 0.00 3.27
120 121 3.833732 AGGGTGAAAGGAAGAAGGAAAC 58.166 45.455 0.00 0.00 0.00 2.78
121 122 4.470602 GAAGGGTGAAAGGAAGAAGGAAA 58.529 43.478 0.00 0.00 0.00 3.13
122 123 3.181433 GGAAGGGTGAAAGGAAGAAGGAA 60.181 47.826 0.00 0.00 0.00 3.36
123 124 2.375509 GGAAGGGTGAAAGGAAGAAGGA 59.624 50.000 0.00 0.00 0.00 3.36
124 125 2.796557 GGAAGGGTGAAAGGAAGAAGG 58.203 52.381 0.00 0.00 0.00 3.46
125 126 2.427506 CGGAAGGGTGAAAGGAAGAAG 58.572 52.381 0.00 0.00 0.00 2.85
126 127 2.561478 CGGAAGGGTGAAAGGAAGAA 57.439 50.000 0.00 0.00 0.00 2.52
140 141 1.819632 CGAGGCCCATTTCCGGAAG 60.820 63.158 17.97 6.73 0.00 3.46
141 142 1.632018 ATCGAGGCCCATTTCCGGAA 61.632 55.000 14.35 14.35 0.00 4.30
142 143 0.761323 TATCGAGGCCCATTTCCGGA 60.761 55.000 0.00 0.00 0.00 5.14
143 144 0.320771 CTATCGAGGCCCATTTCCGG 60.321 60.000 0.00 0.00 0.00 5.14
144 145 0.393077 ACTATCGAGGCCCATTTCCG 59.607 55.000 0.00 0.00 0.00 4.30
145 146 1.141053 ACACTATCGAGGCCCATTTCC 59.859 52.381 0.00 0.00 0.00 3.13
146 147 2.614057 CAACACTATCGAGGCCCATTTC 59.386 50.000 0.00 0.00 0.00 2.17
147 148 2.643551 CAACACTATCGAGGCCCATTT 58.356 47.619 0.00 0.00 0.00 2.32
148 149 1.747206 GCAACACTATCGAGGCCCATT 60.747 52.381 0.00 0.00 0.00 3.16
149 150 0.179045 GCAACACTATCGAGGCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
150 151 1.220749 GCAACACTATCGAGGCCCA 59.779 57.895 0.00 0.00 0.00 5.36
151 152 1.090052 GTGCAACACTATCGAGGCCC 61.090 60.000 0.00 0.00 36.32 5.80
152 153 0.391130 TGTGCAACACTATCGAGGCC 60.391 55.000 0.00 0.00 45.67 5.19
153 154 3.137484 TGTGCAACACTATCGAGGC 57.863 52.632 0.00 0.00 45.67 4.70
164 165 1.402968 CTACTGATGGCCATGTGCAAC 59.597 52.381 26.56 8.07 43.89 4.17
165 166 1.004628 ACTACTGATGGCCATGTGCAA 59.995 47.619 26.56 3.48 43.89 4.08
166 167 0.620030 ACTACTGATGGCCATGTGCA 59.380 50.000 26.56 14.45 43.89 4.57
167 168 1.019673 CACTACTGATGGCCATGTGC 58.980 55.000 26.56 9.77 40.16 4.57
168 169 2.408271 ACACTACTGATGGCCATGTG 57.592 50.000 26.56 25.15 0.00 3.21
169 170 2.573462 AGAACACTACTGATGGCCATGT 59.427 45.455 26.56 18.53 0.00 3.21
170 171 3.201290 GAGAACACTACTGATGGCCATG 58.799 50.000 26.56 12.78 0.00 3.66
171 172 2.840038 TGAGAACACTACTGATGGCCAT 59.160 45.455 20.96 20.96 0.00 4.40
172 173 2.028112 GTGAGAACACTACTGATGGCCA 60.028 50.000 8.56 8.56 42.99 5.36
173 174 2.028112 TGTGAGAACACTACTGATGGCC 60.028 50.000 0.00 0.00 46.07 5.36
174 175 3.319137 TGTGAGAACACTACTGATGGC 57.681 47.619 0.00 0.00 46.07 4.40
175 176 6.808008 ATTTTGTGAGAACACTACTGATGG 57.192 37.500 0.00 0.00 46.07 3.51
176 177 8.562892 AGAAATTTTGTGAGAACACTACTGATG 58.437 33.333 0.00 0.00 46.07 3.07
177 178 8.682936 AGAAATTTTGTGAGAACACTACTGAT 57.317 30.769 0.00 0.00 46.07 2.90
178 179 7.768582 TGAGAAATTTTGTGAGAACACTACTGA 59.231 33.333 0.00 0.00 46.07 3.41
179 180 7.919690 TGAGAAATTTTGTGAGAACACTACTG 58.080 34.615 0.00 0.00 46.07 2.74
180 181 8.682936 ATGAGAAATTTTGTGAGAACACTACT 57.317 30.769 0.00 0.00 46.07 2.57
181 182 9.736023 AAATGAGAAATTTTGTGAGAACACTAC 57.264 29.630 0.00 0.00 46.07 2.73
183 184 9.305925 GAAAATGAGAAATTTTGTGAGAACACT 57.694 29.630 1.01 0.00 46.07 3.55
184 185 9.086336 TGAAAATGAGAAATTTTGTGAGAACAC 57.914 29.630 1.01 0.00 46.09 3.32
185 186 9.304731 CTGAAAATGAGAAATTTTGTGAGAACA 57.695 29.630 1.01 0.00 32.03 3.18
186 187 8.271487 GCTGAAAATGAGAAATTTTGTGAGAAC 58.729 33.333 1.01 0.00 32.03 3.01
187 188 7.439056 GGCTGAAAATGAGAAATTTTGTGAGAA 59.561 33.333 1.01 0.00 32.03 2.87
188 189 6.925165 GGCTGAAAATGAGAAATTTTGTGAGA 59.075 34.615 1.01 0.00 32.03 3.27
189 190 6.927381 AGGCTGAAAATGAGAAATTTTGTGAG 59.073 34.615 1.01 0.00 32.03 3.51
190 191 6.819284 AGGCTGAAAATGAGAAATTTTGTGA 58.181 32.000 1.01 0.00 32.03 3.58
191 192 8.653338 CATAGGCTGAAAATGAGAAATTTTGTG 58.347 33.333 0.00 0.00 32.03 3.33
192 193 8.370182 ACATAGGCTGAAAATGAGAAATTTTGT 58.630 29.630 0.00 0.00 32.03 2.83
193 194 8.767478 ACATAGGCTGAAAATGAGAAATTTTG 57.233 30.769 0.00 0.00 32.03 2.44
194 195 9.860898 GTACATAGGCTGAAAATGAGAAATTTT 57.139 29.630 0.00 0.00 34.30 1.82
195 196 8.184192 CGTACATAGGCTGAAAATGAGAAATTT 58.816 33.333 0.00 0.00 0.00 1.82
196 197 7.336931 ACGTACATAGGCTGAAAATGAGAAATT 59.663 33.333 0.00 0.00 0.00 1.82
197 198 6.823689 ACGTACATAGGCTGAAAATGAGAAAT 59.176 34.615 0.00 0.00 0.00 2.17
198 199 6.170506 ACGTACATAGGCTGAAAATGAGAAA 58.829 36.000 0.00 0.00 0.00 2.52
199 200 5.730550 ACGTACATAGGCTGAAAATGAGAA 58.269 37.500 0.00 0.00 0.00 2.87
200 201 5.339008 ACGTACATAGGCTGAAAATGAGA 57.661 39.130 0.00 0.00 0.00 3.27
201 202 6.422776 AAACGTACATAGGCTGAAAATGAG 57.577 37.500 0.00 0.00 0.00 2.90
202 203 6.653320 AGAAAACGTACATAGGCTGAAAATGA 59.347 34.615 0.00 0.00 0.00 2.57
203 204 6.842163 AGAAAACGTACATAGGCTGAAAATG 58.158 36.000 0.00 0.00 0.00 2.32
204 205 7.448748 AAGAAAACGTACATAGGCTGAAAAT 57.551 32.000 0.00 0.00 0.00 1.82
205 206 6.870971 AAGAAAACGTACATAGGCTGAAAA 57.129 33.333 0.00 0.00 0.00 2.29
206 207 6.870971 AAAGAAAACGTACATAGGCTGAAA 57.129 33.333 0.00 0.00 0.00 2.69
207 208 6.708949 AGAAAAGAAAACGTACATAGGCTGAA 59.291 34.615 0.00 0.00 0.00 3.02
208 209 6.228258 AGAAAAGAAAACGTACATAGGCTGA 58.772 36.000 0.00 0.00 0.00 4.26
209 210 6.481954 AGAAAAGAAAACGTACATAGGCTG 57.518 37.500 0.00 0.00 0.00 4.85
210 211 7.506328 AAAGAAAAGAAAACGTACATAGGCT 57.494 32.000 0.00 0.00 0.00 4.58
211 212 8.570096 AAAAAGAAAAGAAAACGTACATAGGC 57.430 30.769 0.00 0.00 0.00 3.93
235 236 9.895138 GGGTTGATTTACTATAACCAGTCTAAA 57.105 33.333 0.00 0.00 43.33 1.85
236 237 8.488668 GGGGTTGATTTACTATAACCAGTCTAA 58.511 37.037 0.00 0.00 43.33 2.10
237 238 7.847848 AGGGGTTGATTTACTATAACCAGTCTA 59.152 37.037 0.00 0.00 43.33 2.59
238 239 6.677076 AGGGGTTGATTTACTATAACCAGTCT 59.323 38.462 0.00 0.00 43.33 3.24
239 240 6.766467 CAGGGGTTGATTTACTATAACCAGTC 59.234 42.308 0.00 0.00 43.33 3.51
240 241 6.445786 TCAGGGGTTGATTTACTATAACCAGT 59.554 38.462 0.00 0.00 43.33 4.00
241 242 6.766467 GTCAGGGGTTGATTTACTATAACCAG 59.234 42.308 0.00 0.00 43.33 4.00
242 243 6.215841 TGTCAGGGGTTGATTTACTATAACCA 59.784 38.462 0.00 0.00 43.33 3.67
243 244 6.541278 GTGTCAGGGGTTGATTTACTATAACC 59.459 42.308 0.00 0.00 41.37 2.85
244 245 7.336396 AGTGTCAGGGGTTGATTTACTATAAC 58.664 38.462 0.00 0.00 38.29 1.89
245 246 7.504926 AGTGTCAGGGGTTGATTTACTATAA 57.495 36.000 0.00 0.00 38.29 0.98
246 247 8.063153 TCTAGTGTCAGGGGTTGATTTACTATA 58.937 37.037 0.00 0.00 38.29 1.31
247 248 6.901300 TCTAGTGTCAGGGGTTGATTTACTAT 59.099 38.462 0.00 0.00 38.29 2.12
248 249 6.258354 TCTAGTGTCAGGGGTTGATTTACTA 58.742 40.000 0.00 0.00 38.29 1.82
249 250 5.091552 TCTAGTGTCAGGGGTTGATTTACT 58.908 41.667 0.00 0.00 38.29 2.24
250 251 5.187186 TCTCTAGTGTCAGGGGTTGATTTAC 59.813 44.000 0.00 0.00 38.29 2.01
251 252 5.338632 TCTCTAGTGTCAGGGGTTGATTTA 58.661 41.667 0.00 0.00 38.29 1.40
252 253 4.168101 TCTCTAGTGTCAGGGGTTGATTT 58.832 43.478 0.00 0.00 38.29 2.17
253 254 3.772025 CTCTCTAGTGTCAGGGGTTGATT 59.228 47.826 0.00 0.00 38.29 2.57
254 255 3.011821 TCTCTCTAGTGTCAGGGGTTGAT 59.988 47.826 0.00 0.00 38.29 2.57
255 256 2.378886 TCTCTCTAGTGTCAGGGGTTGA 59.621 50.000 0.00 0.00 0.00 3.18
256 257 2.757868 CTCTCTCTAGTGTCAGGGGTTG 59.242 54.545 0.00 0.00 0.00 3.77
257 258 2.650322 TCTCTCTCTAGTGTCAGGGGTT 59.350 50.000 0.00 0.00 0.00 4.11
258 259 2.280103 TCTCTCTCTAGTGTCAGGGGT 58.720 52.381 0.00 0.00 0.00 4.95
259 260 3.593442 ATCTCTCTCTAGTGTCAGGGG 57.407 52.381 0.00 0.00 0.00 4.79
260 261 5.875224 TGATATCTCTCTCTAGTGTCAGGG 58.125 45.833 3.98 0.00 0.00 4.45
261 262 7.040478 CCTTTGATATCTCTCTCTAGTGTCAGG 60.040 44.444 3.98 0.00 0.00 3.86
262 263 7.719193 TCCTTTGATATCTCTCTCTAGTGTCAG 59.281 40.741 3.98 0.00 0.00 3.51
263 264 7.578203 TCCTTTGATATCTCTCTCTAGTGTCA 58.422 38.462 3.98 0.00 0.00 3.58
264 265 8.458573 TTCCTTTGATATCTCTCTCTAGTGTC 57.541 38.462 3.98 0.00 0.00 3.67
265 266 8.830915 TTTCCTTTGATATCTCTCTCTAGTGT 57.169 34.615 3.98 0.00 0.00 3.55
274 275 9.401058 CCTGTATGTTTTTCCTTTGATATCTCT 57.599 33.333 3.98 0.00 0.00 3.10
275 276 9.396022 TCCTGTATGTTTTTCCTTTGATATCTC 57.604 33.333 3.98 0.00 0.00 2.75
276 277 9.401058 CTCCTGTATGTTTTTCCTTTGATATCT 57.599 33.333 3.98 0.00 0.00 1.98
277 278 8.624776 CCTCCTGTATGTTTTTCCTTTGATATC 58.375 37.037 0.00 0.00 0.00 1.63
278 279 7.561356 CCCTCCTGTATGTTTTTCCTTTGATAT 59.439 37.037 0.00 0.00 0.00 1.63
279 280 6.889722 CCCTCCTGTATGTTTTTCCTTTGATA 59.110 38.462 0.00 0.00 0.00 2.15
280 281 5.716703 CCCTCCTGTATGTTTTTCCTTTGAT 59.283 40.000 0.00 0.00 0.00 2.57
281 282 5.076873 CCCTCCTGTATGTTTTTCCTTTGA 58.923 41.667 0.00 0.00 0.00 2.69
282 283 4.321974 GCCCTCCTGTATGTTTTTCCTTTG 60.322 45.833 0.00 0.00 0.00 2.77
283 284 3.832490 GCCCTCCTGTATGTTTTTCCTTT 59.168 43.478 0.00 0.00 0.00 3.11
284 285 3.076032 AGCCCTCCTGTATGTTTTTCCTT 59.924 43.478 0.00 0.00 0.00 3.36
285 286 2.649816 AGCCCTCCTGTATGTTTTTCCT 59.350 45.455 0.00 0.00 0.00 3.36
286 287 3.017442 GAGCCCTCCTGTATGTTTTTCC 58.983 50.000 0.00 0.00 0.00 3.13
287 288 3.017442 GGAGCCCTCCTGTATGTTTTTC 58.983 50.000 7.08 0.00 46.16 2.29
288 289 3.087370 GGAGCCCTCCTGTATGTTTTT 57.913 47.619 7.08 0.00 46.16 1.94
289 290 2.808906 GGAGCCCTCCTGTATGTTTT 57.191 50.000 7.08 0.00 46.16 2.43
300 301 4.097361 GACCGTTGGGGAGCCCTC 62.097 72.222 5.38 0.00 45.70 4.30
303 304 4.097361 GAGGACCGTTGGGGAGCC 62.097 72.222 0.00 0.00 39.97 4.70
304 305 3.003763 AGAGGACCGTTGGGGAGC 61.004 66.667 0.00 0.00 39.97 4.70
305 306 2.711922 CGAGAGGACCGTTGGGGAG 61.712 68.421 0.00 0.00 39.97 4.30
306 307 2.678934 CGAGAGGACCGTTGGGGA 60.679 66.667 0.00 0.00 39.97 4.81
307 308 2.580601 AACGAGAGGACCGTTGGGG 61.581 63.158 0.00 0.00 46.77 4.96
308 309 3.057337 AACGAGAGGACCGTTGGG 58.943 61.111 0.00 0.00 46.77 4.12
312 313 1.532316 TTGGGAACGAGAGGACCGT 60.532 57.895 0.00 0.00 42.61 4.83
313 314 1.215647 CTTGGGAACGAGAGGACCG 59.784 63.158 0.00 0.00 45.46 4.79
314 315 1.079057 GCTTGGGAACGAGAGGACC 60.079 63.158 0.00 0.00 45.46 4.46
315 316 0.108567 GAGCTTGGGAACGAGAGGAC 60.109 60.000 0.00 0.00 45.46 3.85
316 317 1.258445 GGAGCTTGGGAACGAGAGGA 61.258 60.000 0.00 0.00 45.46 3.71
317 318 1.219393 GGAGCTTGGGAACGAGAGG 59.781 63.158 0.00 0.00 45.46 3.69
318 319 1.219393 GGGAGCTTGGGAACGAGAG 59.781 63.158 0.00 0.00 45.46 3.20
319 320 2.291043 GGGGAGCTTGGGAACGAGA 61.291 63.158 0.00 0.00 45.46 4.04
320 321 2.269241 GGGGAGCTTGGGAACGAG 59.731 66.667 0.00 0.00 45.38 4.18
321 322 3.327404 GGGGGAGCTTGGGAACGA 61.327 66.667 0.00 0.00 0.00 3.85
322 323 4.778143 CGGGGGAGCTTGGGAACG 62.778 72.222 0.00 0.00 0.00 3.95
323 324 4.426313 CCGGGGGAGCTTGGGAAC 62.426 72.222 0.00 0.00 0.00 3.62
334 335 4.506255 GATGTTGGAGGCCGGGGG 62.506 72.222 2.18 0.00 0.00 5.40
335 336 4.506255 GGATGTTGGAGGCCGGGG 62.506 72.222 2.18 0.00 0.00 5.73
336 337 4.506255 GGGATGTTGGAGGCCGGG 62.506 72.222 2.18 0.00 0.00 5.73
337 338 2.572333 ATTGGGATGTTGGAGGCCGG 62.572 60.000 0.00 0.00 0.00 6.13
338 339 1.076777 ATTGGGATGTTGGAGGCCG 60.077 57.895 0.00 0.00 0.00 6.13
339 340 1.103398 CGATTGGGATGTTGGAGGCC 61.103 60.000 0.00 0.00 0.00 5.19
340 341 1.103398 CCGATTGGGATGTTGGAGGC 61.103 60.000 0.00 0.00 38.47 4.70
341 342 1.103398 GCCGATTGGGATGTTGGAGG 61.103 60.000 0.00 0.00 38.47 4.30
342 343 1.439353 CGCCGATTGGGATGTTGGAG 61.439 60.000 0.00 0.00 38.47 3.86
343 344 1.451207 CGCCGATTGGGATGTTGGA 60.451 57.895 0.00 0.00 38.47 3.53
344 345 2.480610 CCGCCGATTGGGATGTTGG 61.481 63.158 0.00 0.00 38.47 3.77
345 346 3.110139 CCGCCGATTGGGATGTTG 58.890 61.111 0.00 0.00 38.47 3.33
346 347 2.828549 GCCGCCGATTGGGATGTT 60.829 61.111 0.00 0.00 38.47 2.71
347 348 4.875713 GGCCGCCGATTGGGATGT 62.876 66.667 0.00 0.00 38.47 3.06
440 441 2.808543 ACATCACGAAAAGAAGCAGACC 59.191 45.455 0.00 0.00 0.00 3.85
446 447 2.724690 ACGACGACATCACGAAAAGAAG 59.275 45.455 0.00 0.00 37.03 2.85
467 468 0.599204 GTGTGAAGACGAGCCGGAAA 60.599 55.000 5.05 0.00 0.00 3.13
469 470 2.649034 GTGTGAAGACGAGCCGGA 59.351 61.111 5.05 0.00 0.00 5.14
471 472 3.470567 GCGTGTGAAGACGAGCCG 61.471 66.667 3.96 0.00 42.10 5.52
472 473 3.470567 CGCGTGTGAAGACGAGCC 61.471 66.667 3.96 0.00 42.10 4.70
510 511 3.510388 TCCAGATCAACAGAAGTAGCG 57.490 47.619 0.00 0.00 0.00 4.26
511 512 3.935828 GGTTCCAGATCAACAGAAGTAGC 59.064 47.826 0.00 0.00 0.00 3.58
514 515 2.289694 CCGGTTCCAGATCAACAGAAGT 60.290 50.000 0.00 0.00 0.00 3.01
516 517 1.974957 TCCGGTTCCAGATCAACAGAA 59.025 47.619 0.00 0.00 0.00 3.02
528 529 4.047059 TCGTCGCTGTCCGGTTCC 62.047 66.667 0.00 0.00 37.59 3.62
534 535 1.400846 TGAATCTAGTCGTCGCTGTCC 59.599 52.381 0.00 0.00 0.00 4.02
538 539 2.747989 TCACTTGAATCTAGTCGTCGCT 59.252 45.455 0.00 0.00 0.00 4.93
539 540 3.102276 CTCACTTGAATCTAGTCGTCGC 58.898 50.000 0.00 0.00 0.00 5.19
545 546 5.449314 CGACGATTCCTCACTTGAATCTAGT 60.449 44.000 10.29 0.00 43.76 2.57
546 547 4.973051 CGACGATTCCTCACTTGAATCTAG 59.027 45.833 10.29 0.00 43.76 2.43
548 549 3.193691 ACGACGATTCCTCACTTGAATCT 59.806 43.478 0.00 0.12 43.76 2.40
575 576 2.813179 GCAGCCACATAACGGAGCG 61.813 63.158 0.00 0.00 0.00 5.03
578 579 1.447140 GACGCAGCCACATAACGGA 60.447 57.895 0.00 0.00 0.00 4.69
621 622 0.182299 GAGGAATCTGAGGCTTGGGG 59.818 60.000 0.00 0.00 0.00 4.96
627 628 1.144936 CCACCGAGGAATCTGAGGC 59.855 63.158 0.00 0.00 41.22 4.70
632 633 2.504367 CAAACAACCACCGAGGAATCT 58.496 47.619 0.00 0.00 41.22 2.40
654 655 4.338400 GTCTCCAAGCACTTAAAACACCTT 59.662 41.667 0.00 0.00 0.00 3.50
670 671 1.202099 TTATGGTGGCCCGTCTCCAA 61.202 55.000 0.00 0.00 35.01 3.53
676 677 0.916086 TCAGATTTATGGTGGCCCGT 59.084 50.000 0.00 0.00 0.00 5.28
686 687 3.879295 CACACCGGAGCATTCAGATTTAT 59.121 43.478 9.46 0.00 0.00 1.40
687 688 3.055458 TCACACCGGAGCATTCAGATTTA 60.055 43.478 9.46 0.00 0.00 1.40
694 695 3.179443 TCTAATCACACCGGAGCATTC 57.821 47.619 9.46 0.00 0.00 2.67
707 708 0.541392 ACAGCGGTGGCATCTAATCA 59.459 50.000 20.20 0.00 43.41 2.57
711 712 1.078497 CCAACAGCGGTGGCATCTA 60.078 57.895 20.20 0.00 43.41 1.98
732 733 2.159085 GCTTCTAGCTATGTGACCCGTT 60.159 50.000 0.00 0.00 38.45 4.44
758 759 1.107114 TGACGAATCTGGAGAGGAGC 58.893 55.000 0.00 0.00 0.00 4.70
786 787 3.237741 GATCTGGGAGGCGGAGGG 61.238 72.222 0.00 0.00 0.00 4.30
789 790 1.456518 CTCAGATCTGGGAGGCGGA 60.457 63.158 18.40 0.00 31.13 5.54
791 792 2.420890 GCTCAGATCTGGGAGGCG 59.579 66.667 27.21 7.57 31.13 5.52
794 795 2.134991 CCAGGCTCAGATCTGGGAG 58.865 63.158 27.21 16.20 44.99 4.30
795 796 4.388465 CCAGGCTCAGATCTGGGA 57.612 61.111 27.21 5.29 44.99 4.37
810 811 4.074526 GTGCGAGCAGAGAGGCCA 62.075 66.667 5.01 0.00 0.00 5.36
812 813 3.714871 GAGGTGCGAGCAGAGAGGC 62.715 68.421 0.00 0.00 0.00 4.70
815 816 3.443925 CGGAGGTGCGAGCAGAGA 61.444 66.667 0.00 0.00 0.00 3.10
834 835 3.589654 CTCTTGCGAAGACCGGCCA 62.590 63.158 0.00 0.00 39.04 5.36
836 837 2.815647 CCTCTTGCGAAGACCGGC 60.816 66.667 0.00 0.00 39.04 6.13
838 839 2.815647 GCCCTCTTGCGAAGACCG 60.816 66.667 0.00 0.00 42.21 4.79
886 887 0.178873 AGGAGAGGGTAGTTGGCCAA 60.179 55.000 16.05 16.05 0.00 4.52
897 898 0.469144 GGGACTGAGCTAGGAGAGGG 60.469 65.000 0.00 0.00 0.00 4.30
902 903 1.000486 AAGCGGGACTGAGCTAGGA 60.000 57.895 0.00 0.00 43.78 2.94
903 904 1.439644 GAAGCGGGACTGAGCTAGG 59.560 63.158 0.00 0.00 43.78 3.02
906 907 3.394836 GGGAAGCGGGACTGAGCT 61.395 66.667 0.00 0.00 46.97 4.09
909 910 3.003173 CCAGGGAAGCGGGACTGA 61.003 66.667 0.00 0.00 32.86 3.41
922 923 3.273434 CATGGATGTATATTCCGCCAGG 58.727 50.000 0.00 0.00 35.94 4.45
941 942 1.528824 CGCAGAACTGGATCCCCAT 59.471 57.895 9.90 0.00 42.59 4.00
960 961 4.154347 CCTCCACTCCGCTCAGGC 62.154 72.222 0.00 0.00 40.77 4.85
996 997 0.317799 CCTCGAGCTCATCCATCCTG 59.682 60.000 15.40 0.00 0.00 3.86
997 998 1.470996 GCCTCGAGCTCATCCATCCT 61.471 60.000 15.40 0.00 38.99 3.24
1011 1012 1.787155 CGATTACTGAAATCCGCCTCG 59.213 52.381 0.00 0.00 40.91 4.63
1014 1015 0.232303 CGCGATTACTGAAATCCGCC 59.768 55.000 0.00 0.00 40.91 6.13
1017 1018 1.583054 AGGCGCGATTACTGAAATCC 58.417 50.000 12.10 0.00 40.91 3.01
1035 1036 1.303799 CCTGCACAGTGGCTAGCAAG 61.304 60.000 18.24 5.24 36.44 4.01
1036 1037 1.302752 CCTGCACAGTGGCTAGCAA 60.303 57.895 18.24 0.85 36.44 3.91
1058 1059 2.401766 GCAGACATGGCCGGTCTTG 61.402 63.158 23.16 19.55 42.77 3.02
1059 1060 2.045926 GCAGACATGGCCGGTCTT 60.046 61.111 23.16 0.00 42.77 3.01
1065 1066 3.512516 GCTTCCGCAGACATGGCC 61.513 66.667 0.00 0.00 35.78 5.36
1102 1103 0.468214 CTCTCGACCCCATAGAGCCA 60.468 60.000 0.00 0.00 31.11 4.75
1181 1182 0.321564 CACCCTCTCACAATCCGCAA 60.322 55.000 0.00 0.00 0.00 4.85
1291 1292 3.144657 TCCAATCTTGCAGAAGAAGCA 57.855 42.857 0.00 0.00 41.64 3.91
1293 1294 6.263516 TCAAATCCAATCTTGCAGAAGAAG 57.736 37.500 0.00 0.00 41.64 2.85
1320 1321 4.170062 CAGGCGTTCGCTGGCATG 62.170 66.667 16.40 0.00 34.48 4.06
1326 1327 4.379243 CACTCCCAGGCGTTCGCT 62.379 66.667 16.40 0.74 0.00 4.93
1968 1969 2.047274 GTAGTTGCCAGCGAGCCA 60.047 61.111 0.00 0.00 0.00 4.75
2087 2290 0.602638 ACCGTGTTGATGCGTCACAT 60.603 50.000 8.48 0.00 43.54 3.21
2088 2291 1.227409 ACCGTGTTGATGCGTCACA 60.227 52.632 8.48 7.56 33.11 3.58
2089 2292 1.204062 CACCGTGTTGATGCGTCAC 59.796 57.895 8.48 4.90 33.11 3.67
2090 2293 1.958715 CCACCGTGTTGATGCGTCA 60.959 57.895 3.97 3.97 0.00 4.35
2091 2294 1.959226 ACCACCGTGTTGATGCGTC 60.959 57.895 0.00 0.00 0.00 5.19
2092 2295 2.110213 ACCACCGTGTTGATGCGT 59.890 55.556 0.00 0.00 0.00 5.24
2093 2296 2.555782 CACCACCGTGTTGATGCG 59.444 61.111 0.00 0.00 35.10 4.73
2094 2297 1.452145 AACCACCACCGTGTTGATGC 61.452 55.000 0.00 0.00 38.41 3.91
2095 2298 0.591170 GAACCACCACCGTGTTGATG 59.409 55.000 0.00 0.00 38.41 3.07
2096 2299 0.472471 AGAACCACCACCGTGTTGAT 59.528 50.000 0.00 0.00 38.41 2.57
2097 2300 0.253610 AAGAACCACCACCGTGTTGA 59.746 50.000 0.00 0.00 38.41 3.18
2098 2301 0.661020 GAAGAACCACCACCGTGTTG 59.339 55.000 0.00 0.00 38.41 3.33
2099 2302 0.544697 AGAAGAACCACCACCGTGTT 59.455 50.000 0.00 0.00 38.41 3.32
2100 2303 0.544697 AAGAAGAACCACCACCGTGT 59.455 50.000 0.00 0.00 38.41 4.49
2101 2304 1.226746 GAAGAAGAACCACCACCGTG 58.773 55.000 0.00 0.00 39.91 4.94
2102 2305 0.834612 TGAAGAAGAACCACCACCGT 59.165 50.000 0.00 0.00 0.00 4.83
2103 2306 1.202651 ACTGAAGAAGAACCACCACCG 60.203 52.381 0.00 0.00 0.00 4.94
2104 2307 2.222027 CACTGAAGAAGAACCACCACC 58.778 52.381 0.00 0.00 0.00 4.61
2105 2308 2.222027 CCACTGAAGAAGAACCACCAC 58.778 52.381 0.00 0.00 0.00 4.16
2106 2309 1.142870 CCCACTGAAGAAGAACCACCA 59.857 52.381 0.00 0.00 0.00 4.17
2107 2310 1.897560 CCCACTGAAGAAGAACCACC 58.102 55.000 0.00 0.00 0.00 4.61
2193 2421 3.650950 ACCGACCATGGCAAGCCT 61.651 61.111 13.04 0.00 36.94 4.58
2246 2474 2.710902 CGTCCTGATGGAGGCGTCA 61.711 63.158 8.91 0.00 44.16 4.35
2421 2649 2.027653 AGCTGAGGAAGGCACTACTTTC 60.028 50.000 0.00 0.00 38.49 2.62
2426 2654 0.906756 AGCAGCTGAGGAAGGCACTA 60.907 55.000 20.43 0.00 38.49 2.74
2444 2672 0.529337 CAGCGTCTCCATAGCACCAG 60.529 60.000 0.00 0.00 0.00 4.00
2464 2692 0.035152 TCATCATCCGGCACAGCTTT 60.035 50.000 0.00 0.00 0.00 3.51
2755 2983 1.523524 GGCGAGGGGTAAAATCCGA 59.476 57.895 0.00 0.00 0.00 4.55
2781 3009 6.745450 CGCCATCACAATTTTTATTTAGACGT 59.255 34.615 0.00 0.00 0.00 4.34
2784 3012 5.741510 CGCGCCATCACAATTTTTATTTAGA 59.258 36.000 0.00 0.00 0.00 2.10
2895 3123 5.091261 AGAGCTTCAAGTATTCGTCCATT 57.909 39.130 0.00 0.00 0.00 3.16
2943 3171 2.799412 GAGAGCAGTAATCGCCTTGATG 59.201 50.000 0.00 0.00 37.39 3.07
2998 3226 0.251354 GCACTGAAGCCCTCATGAGA 59.749 55.000 24.62 1.62 32.14 3.27
3077 3305 5.163405 GCCATGATACTACCTCTGAAGAACA 60.163 44.000 0.00 0.00 0.00 3.18
3115 3343 5.081032 CCCCCTAACATTCCAAACTAACAA 58.919 41.667 0.00 0.00 0.00 2.83
3212 3440 4.323485 CCACCACAGCCAACTTAGATTCTA 60.323 45.833 0.00 0.00 0.00 2.10
3404 3632 1.216064 CATCCACTCCCTTCCATCCA 58.784 55.000 0.00 0.00 0.00 3.41
3476 3704 2.559478 CCCCCAATTTCCACAATCTCCA 60.559 50.000 0.00 0.00 0.00 3.86
3662 3908 4.574674 TCCAATCTTGCCATTACTGAGT 57.425 40.909 0.00 0.00 0.00 3.41
3706 3952 0.909623 ATGGGGTAAGTGTCTTCCCG 59.090 55.000 0.00 0.00 40.42 5.14
3790 4036 1.279271 ACGCTATCTTGGCATATCCCC 59.721 52.381 0.00 0.00 0.00 4.81
3805 4051 0.385849 TCGAAACGAAAGCGACGCTA 60.386 50.000 24.77 0.03 38.25 4.26
3841 4087 1.269998 CGTTTCCATAAAACCCGGCAA 59.730 47.619 0.00 0.00 43.66 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.