Multiple sequence alignment - TraesCS6B01G120300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G120300 chr6B 100.000 3116 0 0 1 3116 115523944 115527059 0.000000e+00 5755.0
1 TraesCS6B01G120300 chr6B 93.769 1637 86 3 1156 2776 114879949 114881585 0.000000e+00 2444.0
2 TraesCS6B01G120300 chr6B 92.453 1643 94 9 1156 2776 115060418 115062052 0.000000e+00 2320.0
3 TraesCS6B01G120300 chr6B 96.055 1166 43 1 1614 2776 115022557 115023722 0.000000e+00 1895.0
4 TraesCS6B01G120300 chr6B 93.454 993 51 6 639 1618 115012563 115013554 0.000000e+00 1461.0
5 TraesCS6B01G120300 chr6B 94.565 644 35 0 1 644 114976319 114976962 0.000000e+00 996.0
6 TraesCS6B01G120300 chr6B 92.791 541 35 4 431 969 115057783 115058321 0.000000e+00 780.0
7 TraesCS6B01G120300 chr6B 87.143 700 73 7 432 1129 115059614 115060298 0.000000e+00 778.0
8 TraesCS6B01G120300 chr6B 86.733 701 75 9 431 1129 114879145 114879829 0.000000e+00 763.0
9 TraesCS6B01G120300 chr6B 99.125 343 3 0 2774 3116 63754682 63755024 4.420000e-173 617.0
10 TraesCS6B01G120300 chr6B 99.118 340 3 0 2777 3116 114323662 114324001 2.050000e-171 612.0
11 TraesCS6B01G120300 chr6B 98.837 344 3 1 2774 3116 484089838 484089495 2.050000e-171 612.0
12 TraesCS6B01G120300 chr6B 94.014 284 14 1 151 434 115057293 115057573 7.990000e-116 427.0
13 TraesCS6B01G120300 chr6B 92.226 283 21 1 152 434 115059190 115059471 1.740000e-107 399.0
14 TraesCS6B01G120300 chr6B 91.166 283 24 1 152 434 114869107 114869388 1.750000e-102 383.0
15 TraesCS6B01G120300 chr6B 72.713 623 126 31 2134 2724 71356563 71355953 5.340000e-38 169.0
16 TraesCS6B01G120300 chr6B 100.000 45 0 0 1 45 114869066 114869110 1.990000e-12 84.2
17 TraesCS6B01G120300 chr6B 97.500 40 1 0 1 40 115057256 115057295 5.580000e-08 69.4
18 TraesCS6B01G120300 chr6D 95.451 2792 108 4 1 2776 46441926 46444714 0.000000e+00 4434.0
19 TraesCS6B01G120300 chr6D 82.683 1282 203 11 1478 2755 46778330 46779596 0.000000e+00 1120.0
20 TraesCS6B01G120300 chr6D 83.784 222 30 4 943 1160 46777517 46777736 4.070000e-49 206.0
21 TraesCS6B01G120300 chr6D 75.414 362 76 11 2370 2724 10441397 10441752 2.490000e-36 163.0
22 TraesCS6B01G120300 chr3D 80.493 1297 230 18 1502 2776 569895117 569896412 0.000000e+00 972.0
23 TraesCS6B01G120300 chr3D 80.245 1306 234 16 1493 2776 567412542 567411239 0.000000e+00 961.0
24 TraesCS6B01G120300 chr3D 84.010 394 59 4 433 822 537590395 537590788 2.930000e-100 375.0
25 TraesCS6B01G120300 chr5B 99.412 340 2 0 2777 3116 710102752 710102413 4.420000e-173 617.0
26 TraesCS6B01G120300 chr5B 99.118 340 3 0 2777 3116 445509971 445509632 2.050000e-171 612.0
27 TraesCS6B01G120300 chr4B 98.291 351 5 1 2766 3116 177352867 177352518 5.710000e-172 614.0
28 TraesCS6B01G120300 chr4B 73.841 604 130 20 2138 2724 667351189 667350597 6.770000e-52 215.0
29 TraesCS6B01G120300 chr7B 97.207 358 5 3 2762 3116 112941173 112941528 4.450000e-168 601.0
30 TraesCS6B01G120300 chr4A 97.450 353 8 1 2764 3116 645844995 645845346 4.450000e-168 601.0
31 TraesCS6B01G120300 chr3B 94.072 388 15 7 2735 3116 677216118 677215733 1.610000e-162 582.0
32 TraesCS6B01G120300 chr3B 89.565 115 12 0 39 153 511379588 511379702 2.500000e-31 147.0
33 TraesCS6B01G120300 chr3B 91.045 67 5 1 1291 1356 756606695 756606761 4.280000e-14 89.8
34 TraesCS6B01G120300 chr1A 92.920 113 6 2 42 153 501028799 501028910 2.490000e-36 163.0
35 TraesCS6B01G120300 chr1A 88.889 108 12 0 111 218 6471985 6471878 1.950000e-27 134.0
36 TraesCS6B01G120300 chr1D 88.333 120 11 2 41 160 278464006 278463890 1.170000e-29 141.0
37 TraesCS6B01G120300 chr2D 92.632 95 7 0 60 154 521705018 521704924 1.510000e-28 137.0
38 TraesCS6B01G120300 chr2D 86.842 114 11 3 42 153 443085442 443085331 1.170000e-24 124.0
39 TraesCS6B01G120300 chr2D 85.714 119 11 4 42 154 296205906 296206024 1.520000e-23 121.0
40 TraesCS6B01G120300 chr7A 81.618 136 25 0 1627 1762 686771121 686771256 2.540000e-21 113.0
41 TraesCS6B01G120300 chr2A 90.588 85 7 1 69 153 461563828 461563745 9.130000e-21 111.0
42 TraesCS6B01G120300 chr2B 86.364 66 6 2 18 80 781785489 781785424 5.580000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G120300 chr6B 115523944 115527059 3115 False 5755.000000 5755 100.000000 1 3116 1 chr6B.!!$F6 3115
1 TraesCS6B01G120300 chr6B 115022557 115023722 1165 False 1895.000000 1895 96.055000 1614 2776 1 chr6B.!!$F5 1162
2 TraesCS6B01G120300 chr6B 114879145 114881585 2440 False 1603.500000 2444 90.251000 431 2776 2 chr6B.!!$F8 2345
3 TraesCS6B01G120300 chr6B 115012563 115013554 991 False 1461.000000 1461 93.454000 639 1618 1 chr6B.!!$F4 979
4 TraesCS6B01G120300 chr6B 114976319 114976962 643 False 996.000000 996 94.565000 1 644 1 chr6B.!!$F3 643
5 TraesCS6B01G120300 chr6B 115057256 115062052 4796 False 795.566667 2320 92.687833 1 2776 6 chr6B.!!$F9 2775
6 TraesCS6B01G120300 chr6D 46441926 46444714 2788 False 4434.000000 4434 95.451000 1 2776 1 chr6D.!!$F2 2775
7 TraesCS6B01G120300 chr6D 46777517 46779596 2079 False 663.000000 1120 83.233500 943 2755 2 chr6D.!!$F3 1812
8 TraesCS6B01G120300 chr3D 569895117 569896412 1295 False 972.000000 972 80.493000 1502 2776 1 chr3D.!!$F2 1274
9 TraesCS6B01G120300 chr3D 567411239 567412542 1303 True 961.000000 961 80.245000 1493 2776 1 chr3D.!!$R1 1283
10 TraesCS6B01G120300 chr4B 667350597 667351189 592 True 215.000000 215 73.841000 2138 2724 1 chr4B.!!$R2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 1031 0.695803 ATCAGGGGAGATGACCACCC 60.696 60.0 0.0 0.0 43.69 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2427 4899 0.466189 CCACCAGCAACCAGTTGTCT 60.466 55.0 11.88 6.95 42.31 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.784969 AGAGTTATGCATGTATTACTCCCTCT 59.215 38.462 28.15 14.53 37.40 3.69
51 52 7.950684 AGAGTTATGCATGTATTACTCCCTCTA 59.049 37.037 28.15 0.00 37.40 2.43
95 96 9.631257 TTCTAGATATTCATTCATTTTGCTCCA 57.369 29.630 0.00 0.00 0.00 3.86
171 172 5.244626 GGAGTACTTGGTAGTGGTTTACTCA 59.755 44.000 0.00 0.00 40.89 3.41
313 314 4.082125 AGGTCACAATTTCATTCCAGTCC 58.918 43.478 0.00 0.00 0.00 3.85
318 319 3.770933 ACAATTTCATTCCAGTCCCCATG 59.229 43.478 0.00 0.00 0.00 3.66
334 335 3.441163 CCCATGCATTCTTTGTGATTCG 58.559 45.455 0.00 0.00 0.00 3.34
473 687 4.320456 CAGCAGCCCACGAGGTGT 62.320 66.667 0.00 0.00 37.57 4.16
474 688 4.008933 AGCAGCCCACGAGGTGTC 62.009 66.667 0.00 0.00 37.57 3.67
479 693 2.584391 GCCCACGAGGTGTCTTCCT 61.584 63.158 0.00 0.00 40.97 3.36
492 706 1.303074 CTTCCTGGCTTCTGCTGCA 60.303 57.895 0.88 0.88 39.59 4.41
527 741 1.817941 CCCCCGATGCGTTGGTAAG 60.818 63.158 11.45 0.00 0.00 2.34
609 825 3.935203 GACAAAAATCATCTCGCCTCTCA 59.065 43.478 0.00 0.00 0.00 3.27
807 1023 3.509517 GCTGCAAATCAGGGGAGAT 57.490 52.632 0.00 0.00 43.06 2.75
815 1031 0.695803 ATCAGGGGAGATGACCACCC 60.696 60.000 0.00 0.00 43.69 4.61
1114 3150 4.998033 AGTGCACCTTTTCTTCTAGTTAGC 59.002 41.667 14.63 0.00 0.00 3.09
1386 3727 2.096248 GGGAGGTAGATAGGCGATGAG 58.904 57.143 0.00 0.00 0.00 2.90
1521 3962 1.821136 GGCTGCTGCTATTTCAGGTTT 59.179 47.619 15.64 0.00 39.59 3.27
1526 3967 4.334552 TGCTGCTATTTCAGGTTTGATCA 58.665 39.130 0.00 0.00 34.74 2.92
1591 4032 1.907807 GCAATGCCTGTTGACCCCA 60.908 57.895 0.00 0.00 0.00 4.96
1638 4079 2.557924 CCTTCTCATCGAGATCCTCCTG 59.442 54.545 0.00 0.00 38.56 3.86
1746 4187 3.249189 TTCCGCAAGCTCCACCCT 61.249 61.111 0.00 0.00 0.00 4.34
1787 4234 1.701031 TTCAAGACCAGGGCGAACCA 61.701 55.000 0.00 0.00 43.89 3.67
1812 4259 1.305219 GCTTTGTGCCGATGCTACCA 61.305 55.000 0.00 0.00 38.71 3.25
1940 4402 0.461870 TGCGATGAAGAACCCGGATG 60.462 55.000 0.73 0.00 0.00 3.51
1995 4457 1.340248 AGAGGCATGGTTATCGTACCG 59.660 52.381 0.00 0.00 41.28 4.02
2035 4497 1.407979 ACCAGGACGGCTATTTCTACG 59.592 52.381 0.00 0.00 39.03 3.51
2357 4822 1.573829 CGAACCATGTTGTCACGGGG 61.574 60.000 0.00 0.00 30.37 5.73
2427 4899 1.517361 CATCTGGCTACGCACAGGA 59.483 57.895 0.00 0.00 35.47 3.86
2483 4955 5.759763 TGCGTGAGATGTATGCTAAATTGAT 59.240 36.000 0.00 0.00 0.00 2.57
2577 5049 2.029828 GGGTCGATGCCTAGTCTATGTG 60.030 54.545 0.00 0.00 0.00 3.21
2607 5080 3.877508 AGTGCAGGAAGTTGTGTAAAGTC 59.122 43.478 0.00 0.00 0.00 3.01
2655 5128 1.078426 GGGTCGTGTCCATCCTTGG 60.078 63.158 0.00 0.00 45.15 3.61
2772 5245 3.001330 GTGTGGTCGCATTAGAAGCATAC 59.999 47.826 0.00 0.00 0.00 2.39
2776 5249 3.809832 GGTCGCATTAGAAGCATACATGT 59.190 43.478 2.69 2.69 0.00 3.21
2777 5250 4.319046 GGTCGCATTAGAAGCATACATGTG 60.319 45.833 9.11 0.00 0.00 3.21
2778 5251 4.271049 GTCGCATTAGAAGCATACATGTGT 59.729 41.667 9.11 0.00 0.00 3.72
2779 5252 4.875536 TCGCATTAGAAGCATACATGTGTT 59.124 37.500 9.11 0.00 0.00 3.32
2780 5253 4.965762 CGCATTAGAAGCATACATGTGTTG 59.034 41.667 9.11 7.42 0.00 3.33
2781 5254 5.276270 GCATTAGAAGCATACATGTGTTGG 58.724 41.667 9.11 0.00 0.00 3.77
2782 5255 5.066375 GCATTAGAAGCATACATGTGTTGGA 59.934 40.000 9.11 0.00 0.00 3.53
2783 5256 6.404623 GCATTAGAAGCATACATGTGTTGGAA 60.405 38.462 9.11 0.00 0.00 3.53
2784 5257 7.537715 CATTAGAAGCATACATGTGTTGGAAA 58.462 34.615 9.11 0.00 0.00 3.13
2785 5258 7.701539 TTAGAAGCATACATGTGTTGGAAAT 57.298 32.000 9.11 0.00 0.00 2.17
2786 5259 8.800370 TTAGAAGCATACATGTGTTGGAAATA 57.200 30.769 9.11 0.00 0.00 1.40
2787 5260 7.886629 AGAAGCATACATGTGTTGGAAATAT 57.113 32.000 9.11 0.00 0.00 1.28
2788 5261 7.709947 AGAAGCATACATGTGTTGGAAATATG 58.290 34.615 9.11 1.74 0.00 1.78
2789 5262 5.835257 AGCATACATGTGTTGGAAATATGC 58.165 37.500 9.11 12.10 42.30 3.14
2790 5263 4.984161 GCATACATGTGTTGGAAATATGCC 59.016 41.667 9.11 0.00 38.19 4.40
2791 5264 5.531634 CATACATGTGTTGGAAATATGCCC 58.468 41.667 9.11 0.00 0.00 5.36
2792 5265 3.711863 ACATGTGTTGGAAATATGCCCT 58.288 40.909 0.00 0.00 0.00 5.19
2793 5266 4.865905 ACATGTGTTGGAAATATGCCCTA 58.134 39.130 0.00 0.00 0.00 3.53
2794 5267 4.889409 ACATGTGTTGGAAATATGCCCTAG 59.111 41.667 0.00 0.00 0.00 3.02
2795 5268 4.853468 TGTGTTGGAAATATGCCCTAGA 57.147 40.909 0.00 0.00 0.00 2.43
2796 5269 4.780815 TGTGTTGGAAATATGCCCTAGAG 58.219 43.478 0.00 0.00 0.00 2.43
2797 5270 4.137543 GTGTTGGAAATATGCCCTAGAGG 58.862 47.826 0.00 0.00 39.47 3.69
2813 5286 7.839680 CCCTAGAGGCAATAATAAATTGGTT 57.160 36.000 0.00 0.00 0.00 3.67
2814 5287 8.934023 CCCTAGAGGCAATAATAAATTGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
2815 5288 9.533831 CCCTAGAGGCAATAATAAATTGGTTAT 57.466 33.333 0.00 0.00 33.58 1.89
2893 5366 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
2894 5367 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
2895 5368 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
2896 5369 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
2897 5370 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
2898 5371 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
2899 5372 3.941483 GGAAACTCAGATACATGTGTGGG 59.059 47.826 9.11 5.82 0.00 4.61
2900 5373 4.565652 GGAAACTCAGATACATGTGTGGGT 60.566 45.833 9.11 6.49 0.00 4.51
2901 5374 5.338056 GGAAACTCAGATACATGTGTGGGTA 60.338 44.000 9.11 0.00 0.00 3.69
2902 5375 4.737855 ACTCAGATACATGTGTGGGTAC 57.262 45.455 9.11 0.00 0.00 3.34
2903 5376 4.093743 ACTCAGATACATGTGTGGGTACA 58.906 43.478 9.11 0.00 34.63 2.90
2904 5377 4.716784 ACTCAGATACATGTGTGGGTACAT 59.283 41.667 9.11 0.00 41.77 2.29
2905 5378 5.897250 ACTCAGATACATGTGTGGGTACATA 59.103 40.000 9.11 0.00 39.17 2.29
2906 5379 6.040955 ACTCAGATACATGTGTGGGTACATAG 59.959 42.308 9.11 0.00 39.17 2.23
2907 5380 6.133356 TCAGATACATGTGTGGGTACATAGA 58.867 40.000 9.11 0.00 39.17 1.98
2908 5381 6.040504 TCAGATACATGTGTGGGTACATAGAC 59.959 42.308 9.11 0.00 39.17 2.59
2909 5382 5.897250 AGATACATGTGTGGGTACATAGACA 59.103 40.000 9.11 0.00 39.17 3.41
2910 5383 4.901197 ACATGTGTGGGTACATAGACAA 57.099 40.909 0.00 0.00 39.17 3.18
2911 5384 4.575885 ACATGTGTGGGTACATAGACAAC 58.424 43.478 0.00 0.00 39.17 3.32
2912 5385 4.041075 ACATGTGTGGGTACATAGACAACA 59.959 41.667 0.00 0.00 39.17 3.33
2913 5386 3.997762 TGTGTGGGTACATAGACAACAC 58.002 45.455 0.00 0.00 39.39 3.32
2914 5387 3.244284 TGTGTGGGTACATAGACAACACC 60.244 47.826 0.00 0.00 39.39 4.16
2915 5388 2.973406 TGTGGGTACATAGACAACACCA 59.027 45.455 0.00 0.00 31.47 4.17
2916 5389 3.585289 TGTGGGTACATAGACAACACCAT 59.415 43.478 0.00 0.00 31.47 3.55
2917 5390 3.938963 GTGGGTACATAGACAACACCATG 59.061 47.826 0.00 0.00 0.00 3.66
2918 5391 3.585289 TGGGTACATAGACAACACCATGT 59.415 43.478 0.00 0.00 35.81 3.21
2927 5400 4.546829 GACAACACCATGTCCCTAGTAA 57.453 45.455 0.00 0.00 43.11 2.24
2928 5401 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
2929 5402 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
2930 5403 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
2931 5404 2.119495 CACCATGTCCCTAGTAAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
2932 5405 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
2933 5406 2.022918 ACCATGTCCCTAGTAAGCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
2934 5407 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
2935 5408 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
2936 5409 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
2937 5410 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
2938 5411 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
2939 5412 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
2940 5413 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
2941 5414 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
2942 5415 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
2943 5416 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
2944 5417 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
2945 5418 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
2946 5419 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
2947 5420 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
2948 5421 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
2949 5422 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
2950 5423 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
2951 5424 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
2952 5425 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
2953 5426 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
2954 5427 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
2955 5428 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
2956 5429 4.238514 AGTTGACTAGCTCGTTGATCAAC 58.761 43.478 25.68 25.68 43.94 3.18
2957 5430 3.934457 TGACTAGCTCGTTGATCAACA 57.066 42.857 32.06 20.24 41.20 3.33
2958 5431 3.838120 TGACTAGCTCGTTGATCAACAG 58.162 45.455 32.06 26.93 41.20 3.16
2959 5432 3.506067 TGACTAGCTCGTTGATCAACAGA 59.494 43.478 32.06 26.81 41.20 3.41
2960 5433 4.158579 TGACTAGCTCGTTGATCAACAGAT 59.841 41.667 32.06 26.87 41.20 2.90
2961 5434 4.428209 ACTAGCTCGTTGATCAACAGATG 58.572 43.478 32.06 22.34 41.20 2.90
2962 5435 2.625737 AGCTCGTTGATCAACAGATGG 58.374 47.619 32.06 18.60 41.20 3.51
2963 5436 2.027745 AGCTCGTTGATCAACAGATGGT 60.028 45.455 32.06 23.11 41.20 3.55
2964 5437 2.744202 GCTCGTTGATCAACAGATGGTT 59.256 45.455 32.06 0.00 41.20 3.67
2965 5438 3.932710 GCTCGTTGATCAACAGATGGTTA 59.067 43.478 32.06 11.38 41.20 2.85
2966 5439 4.201724 GCTCGTTGATCAACAGATGGTTAC 60.202 45.833 32.06 13.42 41.20 2.50
2967 5440 3.924073 TCGTTGATCAACAGATGGTTACG 59.076 43.478 32.06 18.35 41.20 3.18
2968 5441 3.062099 CGTTGATCAACAGATGGTTACGG 59.938 47.826 32.06 12.08 41.20 4.02
2969 5442 3.973206 TGATCAACAGATGGTTACGGT 57.027 42.857 0.00 0.00 37.72 4.83
2970 5443 4.280436 TGATCAACAGATGGTTACGGTT 57.720 40.909 0.00 0.00 37.72 4.44
2971 5444 4.647611 TGATCAACAGATGGTTACGGTTT 58.352 39.130 0.00 0.00 37.72 3.27
2972 5445 4.693566 TGATCAACAGATGGTTACGGTTTC 59.306 41.667 0.00 0.00 37.72 2.78
2973 5446 3.404899 TCAACAGATGGTTACGGTTTCC 58.595 45.455 0.00 0.00 37.72 3.13
2974 5447 3.071892 TCAACAGATGGTTACGGTTTCCT 59.928 43.478 0.00 0.00 37.72 3.36
2975 5448 3.053831 ACAGATGGTTACGGTTTCCTG 57.946 47.619 0.00 0.00 0.00 3.86
2976 5449 2.635915 ACAGATGGTTACGGTTTCCTGA 59.364 45.455 0.00 0.00 0.00 3.86
2977 5450 3.000727 CAGATGGTTACGGTTTCCTGAC 58.999 50.000 0.00 0.00 0.00 3.51
2978 5451 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
2979 5452 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
2980 5453 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
2981 5454 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
2982 5455 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
2983 5456 1.646912 TACGGTTTCCTGACCATGGA 58.353 50.000 21.47 0.00 39.78 3.41
2984 5457 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
2985 5458 0.036164 CGGTTTCCTGACCATGGACA 59.964 55.000 21.47 18.47 39.78 4.02
2986 5459 1.340017 CGGTTTCCTGACCATGGACAT 60.340 52.381 21.47 0.00 39.78 3.06
2987 5460 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
2988 5461 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
2989 5462 2.493278 GTTTCCTGACCATGGACATTGG 59.507 50.000 21.47 16.85 32.65 3.16
2990 5463 1.667595 TCCTGACCATGGACATTGGA 58.332 50.000 21.47 18.93 0.00 3.53
2991 5464 2.207988 TCCTGACCATGGACATTGGAT 58.792 47.619 21.47 0.00 0.00 3.41
2992 5465 2.092267 TCCTGACCATGGACATTGGATG 60.092 50.000 21.47 5.31 0.00 3.51
3005 5478 5.801350 ACATTGGATGTCGTTGATAACAG 57.199 39.130 0.00 0.00 39.92 3.16
3006 5479 4.635765 ACATTGGATGTCGTTGATAACAGG 59.364 41.667 0.00 0.00 39.92 4.00
3007 5480 4.545208 TTGGATGTCGTTGATAACAGGA 57.455 40.909 0.00 0.00 0.00 3.86
3008 5481 4.753516 TGGATGTCGTTGATAACAGGAT 57.246 40.909 0.00 0.00 0.00 3.24
3009 5482 4.693283 TGGATGTCGTTGATAACAGGATC 58.307 43.478 0.00 0.00 0.00 3.36
3010 5483 4.161377 TGGATGTCGTTGATAACAGGATCA 59.839 41.667 0.00 0.00 33.96 2.92
3011 5484 4.508124 GGATGTCGTTGATAACAGGATCAC 59.492 45.833 0.00 0.00 35.56 3.06
3012 5485 4.529109 TGTCGTTGATAACAGGATCACA 57.471 40.909 0.00 0.00 35.56 3.58
3013 5486 5.084818 TGTCGTTGATAACAGGATCACAT 57.915 39.130 0.00 0.00 35.56 3.21
3014 5487 5.109210 TGTCGTTGATAACAGGATCACATC 58.891 41.667 0.00 0.00 35.56 3.06
3015 5488 5.109210 GTCGTTGATAACAGGATCACATCA 58.891 41.667 0.00 0.00 35.56 3.07
3016 5489 5.755375 GTCGTTGATAACAGGATCACATCAT 59.245 40.000 0.00 0.00 35.56 2.45
3017 5490 6.258727 GTCGTTGATAACAGGATCACATCATT 59.741 38.462 0.00 0.00 35.56 2.57
3018 5491 7.438160 GTCGTTGATAACAGGATCACATCATTA 59.562 37.037 0.00 0.00 35.56 1.90
3019 5492 7.653311 TCGTTGATAACAGGATCACATCATTAG 59.347 37.037 0.00 0.00 35.56 1.73
3020 5493 7.095481 CGTTGATAACAGGATCACATCATTAGG 60.095 40.741 0.00 0.00 35.56 2.69
3021 5494 7.616528 TGATAACAGGATCACATCATTAGGA 57.383 36.000 0.00 0.00 30.75 2.94
3022 5495 7.674120 TGATAACAGGATCACATCATTAGGAG 58.326 38.462 0.00 0.00 30.75 3.69
3023 5496 7.510343 TGATAACAGGATCACATCATTAGGAGA 59.490 37.037 0.00 0.00 30.75 3.71
3024 5497 6.566079 AACAGGATCACATCATTAGGAGAA 57.434 37.500 0.00 0.00 0.00 2.87
3025 5498 6.760440 ACAGGATCACATCATTAGGAGAAT 57.240 37.500 0.00 0.00 0.00 2.40
3026 5499 6.531923 ACAGGATCACATCATTAGGAGAATG 58.468 40.000 0.00 0.00 0.00 2.67
3027 5500 6.328410 ACAGGATCACATCATTAGGAGAATGA 59.672 38.462 2.66 2.66 40.50 2.57
3028 5501 7.017353 ACAGGATCACATCATTAGGAGAATGAT 59.983 37.037 6.90 6.90 45.40 2.45
3036 5509 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
3037 5510 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
3038 5511 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
3039 5512 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
3040 5513 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
3041 5514 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
3042 5515 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
3043 5516 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
3044 5517 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
3045 5518 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
3046 5519 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
3047 5520 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
3048 5521 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
3049 5522 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
3050 5523 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
3051 5524 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
3052 5525 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
3053 5526 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
3054 5527 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
3055 5528 2.644676 GACAAGACCCAATCCTAAGCC 58.355 52.381 0.00 0.00 0.00 4.35
3056 5529 2.239907 GACAAGACCCAATCCTAAGCCT 59.760 50.000 0.00 0.00 0.00 4.58
3057 5530 3.454812 GACAAGACCCAATCCTAAGCCTA 59.545 47.826 0.00 0.00 0.00 3.93
3058 5531 3.456277 ACAAGACCCAATCCTAAGCCTAG 59.544 47.826 0.00 0.00 0.00 3.02
3059 5532 2.050918 AGACCCAATCCTAAGCCTAGC 58.949 52.381 0.00 0.00 0.00 3.42
3060 5533 1.768870 GACCCAATCCTAAGCCTAGCA 59.231 52.381 0.00 0.00 0.00 3.49
3061 5534 1.490910 ACCCAATCCTAAGCCTAGCAC 59.509 52.381 0.00 0.00 0.00 4.40
3062 5535 1.490490 CCCAATCCTAAGCCTAGCACA 59.510 52.381 0.00 0.00 0.00 4.57
3063 5536 2.092429 CCCAATCCTAAGCCTAGCACAA 60.092 50.000 0.00 0.00 0.00 3.33
3064 5537 3.620488 CCAATCCTAAGCCTAGCACAAA 58.380 45.455 0.00 0.00 0.00 2.83
3065 5538 3.629398 CCAATCCTAAGCCTAGCACAAAG 59.371 47.826 0.00 0.00 0.00 2.77
3066 5539 4.517285 CAATCCTAAGCCTAGCACAAAGA 58.483 43.478 0.00 0.00 0.00 2.52
3067 5540 5.128919 CAATCCTAAGCCTAGCACAAAGAT 58.871 41.667 0.00 0.00 0.00 2.40
3068 5541 4.408182 TCCTAAGCCTAGCACAAAGATC 57.592 45.455 0.00 0.00 0.00 2.75
3069 5542 3.126831 CCTAAGCCTAGCACAAAGATCG 58.873 50.000 0.00 0.00 0.00 3.69
3070 5543 2.770164 AAGCCTAGCACAAAGATCGT 57.230 45.000 0.00 0.00 0.00 3.73
3071 5544 3.887621 AAGCCTAGCACAAAGATCGTA 57.112 42.857 0.00 0.00 0.00 3.43
3072 5545 3.444703 AGCCTAGCACAAAGATCGTAG 57.555 47.619 0.00 0.00 0.00 3.51
3073 5546 2.761208 AGCCTAGCACAAAGATCGTAGT 59.239 45.455 0.00 0.00 0.00 2.73
3074 5547 3.195825 AGCCTAGCACAAAGATCGTAGTT 59.804 43.478 0.00 0.00 0.00 2.24
3075 5548 3.552294 GCCTAGCACAAAGATCGTAGTTC 59.448 47.826 0.00 0.00 0.00 3.01
3076 5549 3.791887 CCTAGCACAAAGATCGTAGTTCG 59.208 47.826 0.00 0.00 41.41 3.95
3077 5550 3.299340 AGCACAAAGATCGTAGTTCGT 57.701 42.857 0.00 0.00 40.80 3.85
3078 5551 4.430137 AGCACAAAGATCGTAGTTCGTA 57.570 40.909 0.00 0.00 40.80 3.43
3079 5552 4.995124 AGCACAAAGATCGTAGTTCGTAT 58.005 39.130 0.00 0.00 40.80 3.06
3080 5553 4.798907 AGCACAAAGATCGTAGTTCGTATG 59.201 41.667 0.00 0.00 40.80 2.39
3081 5554 4.548346 GCACAAAGATCGTAGTTCGTATGC 60.548 45.833 0.00 0.00 40.80 3.14
3082 5555 4.798907 CACAAAGATCGTAGTTCGTATGCT 59.201 41.667 0.00 0.00 40.80 3.79
3083 5556 5.969435 CACAAAGATCGTAGTTCGTATGCTA 59.031 40.000 0.00 0.00 40.80 3.49
3084 5557 6.471198 CACAAAGATCGTAGTTCGTATGCTAA 59.529 38.462 0.00 0.00 40.80 3.09
3085 5558 7.008901 CACAAAGATCGTAGTTCGTATGCTAAA 59.991 37.037 0.00 0.00 40.80 1.85
3086 5559 7.220300 ACAAAGATCGTAGTTCGTATGCTAAAG 59.780 37.037 0.00 0.00 40.80 1.85
3087 5560 5.213675 AGATCGTAGTTCGTATGCTAAAGC 58.786 41.667 0.00 0.00 40.80 3.51
3088 5561 4.627611 TCGTAGTTCGTATGCTAAAGCT 57.372 40.909 3.26 0.00 40.27 3.74
3089 5562 4.990257 TCGTAGTTCGTATGCTAAAGCTT 58.010 39.130 3.26 0.00 40.27 3.74
3090 5563 5.404946 TCGTAGTTCGTATGCTAAAGCTTT 58.595 37.500 17.30 17.30 40.27 3.51
3091 5564 5.865552 TCGTAGTTCGTATGCTAAAGCTTTT 59.134 36.000 18.47 1.19 40.27 2.27
3092 5565 6.034256 TCGTAGTTCGTATGCTAAAGCTTTTC 59.966 38.462 18.47 10.34 40.27 2.29
3093 5566 6.034683 CGTAGTTCGTATGCTAAAGCTTTTCT 59.965 38.462 18.47 2.60 37.04 2.52
3094 5567 7.219535 CGTAGTTCGTATGCTAAAGCTTTTCTA 59.780 37.037 18.47 4.25 37.04 2.10
3095 5568 7.900782 AGTTCGTATGCTAAAGCTTTTCTAA 57.099 32.000 18.47 0.00 42.66 2.10
3096 5569 8.494016 AGTTCGTATGCTAAAGCTTTTCTAAT 57.506 30.769 18.47 8.96 42.66 1.73
3097 5570 8.391106 AGTTCGTATGCTAAAGCTTTTCTAATG 58.609 33.333 18.47 5.69 42.66 1.90
3098 5571 7.246674 TCGTATGCTAAAGCTTTTCTAATGG 57.753 36.000 18.47 3.26 42.66 3.16
3099 5572 5.909610 CGTATGCTAAAGCTTTTCTAATGGC 59.090 40.000 18.47 5.97 42.66 4.40
3100 5573 5.920193 ATGCTAAAGCTTTTCTAATGGCA 57.080 34.783 18.47 11.97 42.66 4.92
3101 5574 5.720371 TGCTAAAGCTTTTCTAATGGCAA 57.280 34.783 18.47 0.00 42.66 4.52
3102 5575 5.713025 TGCTAAAGCTTTTCTAATGGCAAG 58.287 37.500 18.47 5.49 42.66 4.01
3103 5576 5.243730 TGCTAAAGCTTTTCTAATGGCAAGT 59.756 36.000 18.47 0.00 42.66 3.16
3104 5577 6.432783 TGCTAAAGCTTTTCTAATGGCAAGTA 59.567 34.615 18.47 0.96 42.66 2.24
3105 5578 7.122650 TGCTAAAGCTTTTCTAATGGCAAGTAT 59.877 33.333 18.47 0.00 42.66 2.12
3106 5579 7.645735 GCTAAAGCTTTTCTAATGGCAAGTATC 59.354 37.037 18.47 0.00 38.21 2.24
3107 5580 7.466746 AAAGCTTTTCTAATGGCAAGTATCA 57.533 32.000 5.69 0.00 0.00 2.15
3108 5581 7.651027 AAGCTTTTCTAATGGCAAGTATCAT 57.349 32.000 0.00 0.00 0.00 2.45
3109 5582 7.651027 AGCTTTTCTAATGGCAAGTATCATT 57.349 32.000 0.00 0.00 37.38 2.57
3110 5583 8.071177 AGCTTTTCTAATGGCAAGTATCATTT 57.929 30.769 0.00 0.00 35.50 2.32
3111 5584 8.193438 AGCTTTTCTAATGGCAAGTATCATTTC 58.807 33.333 0.00 0.00 35.50 2.17
3112 5585 7.436376 GCTTTTCTAATGGCAAGTATCATTTCC 59.564 37.037 0.00 0.00 35.50 3.13
3113 5586 8.593945 TTTTCTAATGGCAAGTATCATTTCCT 57.406 30.769 0.00 0.00 35.50 3.36
3114 5587 8.593945 TTTCTAATGGCAAGTATCATTTCCTT 57.406 30.769 0.00 0.00 35.50 3.36
3115 5588 9.693739 TTTCTAATGGCAAGTATCATTTCCTTA 57.306 29.630 0.00 0.00 35.50 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 3.181472 CCTTTTTGCAACCTGAAGAAGCT 60.181 43.478 0.00 0.00 0.00 3.74
313 314 3.441163 CGAATCACAAAGAATGCATGGG 58.559 45.455 0.00 0.00 0.00 4.00
318 319 4.150451 CCAAAACCGAATCACAAAGAATGC 59.850 41.667 0.00 0.00 0.00 3.56
334 335 3.530535 ACATGAGCAACAAACCAAAACC 58.469 40.909 0.00 0.00 0.00 3.27
473 687 1.002868 GCAGCAGAAGCCAGGAAGA 60.003 57.895 0.00 0.00 43.56 2.87
474 688 0.680280 ATGCAGCAGAAGCCAGGAAG 60.680 55.000 0.00 0.00 43.56 3.46
492 706 0.831307 GGGTAGGTTCGAAGAGGCAT 59.169 55.000 0.00 0.00 38.43 4.40
527 741 2.215942 ACAGTGGCAAAGGGGTAATC 57.784 50.000 0.00 0.00 0.00 1.75
609 825 0.482446 ATCGCCAGAGAGAGGGAGAT 59.518 55.000 0.00 0.00 38.64 2.75
703 919 4.369591 AGGATGGGGGTGGAGGCA 62.370 66.667 0.00 0.00 0.00 4.75
807 1023 3.702048 GTGGCTAGCGGGTGGTCA 61.702 66.667 9.00 0.00 0.00 4.02
815 1031 2.507102 CGACTGTGGTGGCTAGCG 60.507 66.667 9.00 0.00 0.00 4.26
896 1112 2.131776 AGTACCTTCAGCGAGCTAGT 57.868 50.000 0.00 0.00 0.00 2.57
1114 3150 7.745594 CCGCAAAACCAATTCATCTTTTATTTG 59.254 33.333 0.00 0.00 0.00 2.32
1183 3496 2.016315 TCGGGGATGGGGAGGTCTA 61.016 63.158 0.00 0.00 0.00 2.59
1386 3727 1.630878 AGTGGGGAATCTCAACTGGAC 59.369 52.381 0.00 0.00 0.00 4.02
1445 3786 6.672266 TCACAAAGTTATGGAGAGAGAAGT 57.328 37.500 0.00 0.00 0.00 3.01
1521 3962 3.072915 ACACTGAGTTGGGAACATGATCA 59.927 43.478 0.00 0.00 42.32 2.92
1526 3967 2.092429 ACACACACTGAGTTGGGAACAT 60.092 45.455 4.47 0.00 42.32 2.71
1591 4032 1.079819 CGTCGAGCACCTTGGACAT 60.080 57.895 0.00 0.00 0.00 3.06
1638 4079 1.070957 GGTGGGGTAGCCGATTAGC 59.929 63.158 4.56 0.00 0.00 3.09
1812 4259 0.549950 CATCATTCTCTGGGGGCTGT 59.450 55.000 0.00 0.00 0.00 4.40
1940 4402 3.122948 CGGGTTGCGCACTATATGTATTC 59.877 47.826 11.12 0.00 0.00 1.75
1995 4457 1.148273 TCCGTAGCATGGGAATGGC 59.852 57.895 0.00 0.00 0.00 4.40
2035 4497 7.536855 TCTTCGAATAGGAGTTTACAGAACTC 58.463 38.462 9.77 9.77 44.38 3.01
2427 4899 0.466189 CCACCAGCAACCAGTTGTCT 60.466 55.000 11.88 6.95 42.31 3.41
2483 4955 4.646040 CCCAATTTGTAAGATCAGGCATCA 59.354 41.667 0.00 0.00 33.29 3.07
2577 5049 2.749621 CAACTTCCTGCACTTGATACCC 59.250 50.000 0.00 0.00 0.00 3.69
2607 5080 3.998099 TCCTCGCTTGTCATCTCATAG 57.002 47.619 0.00 0.00 0.00 2.23
2655 5128 1.959282 GTGGGAGGCCAAATCATCATC 59.041 52.381 5.01 0.00 0.00 2.92
2772 5245 5.132502 TCTAGGGCATATTTCCAACACATG 58.867 41.667 0.00 0.00 0.00 3.21
2776 5249 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
2789 5262 7.839680 AACCAATTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
2867 5340 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
2868 5341 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
2869 5342 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
2870 5343 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
2871 5344 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
2872 5345 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
2873 5346 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
2874 5347 6.408548 CCCACACATGTATCTGAGTTTCCTAT 60.409 42.308 0.00 0.00 0.00 2.57
2875 5348 5.104941 CCCACACATGTATCTGAGTTTCCTA 60.105 44.000 0.00 0.00 0.00 2.94
2876 5349 4.323792 CCCACACATGTATCTGAGTTTCCT 60.324 45.833 0.00 0.00 0.00 3.36
2877 5350 3.941483 CCCACACATGTATCTGAGTTTCC 59.059 47.826 0.00 0.00 0.00 3.13
2878 5351 4.579869 ACCCACACATGTATCTGAGTTTC 58.420 43.478 0.00 0.00 0.00 2.78
2879 5352 4.640771 ACCCACACATGTATCTGAGTTT 57.359 40.909 0.00 0.00 0.00 2.66
2880 5353 4.530553 TGTACCCACACATGTATCTGAGTT 59.469 41.667 0.00 0.00 0.00 3.01
2881 5354 4.093743 TGTACCCACACATGTATCTGAGT 58.906 43.478 0.00 0.00 0.00 3.41
2882 5355 4.736126 TGTACCCACACATGTATCTGAG 57.264 45.455 0.00 0.00 0.00 3.35
2883 5356 6.040504 GTCTATGTACCCACACATGTATCTGA 59.959 42.308 0.00 0.00 39.46 3.27
2884 5357 6.183360 TGTCTATGTACCCACACATGTATCTG 60.183 42.308 0.00 0.00 39.46 2.90
2885 5358 5.897250 TGTCTATGTACCCACACATGTATCT 59.103 40.000 0.00 0.00 39.46 1.98
2886 5359 6.156748 TGTCTATGTACCCACACATGTATC 57.843 41.667 0.00 0.00 39.46 2.24
2887 5360 6.070481 TGTTGTCTATGTACCCACACATGTAT 60.070 38.462 0.00 0.00 39.46 2.29
2888 5361 5.246429 TGTTGTCTATGTACCCACACATGTA 59.754 40.000 0.00 0.00 39.46 2.29
2889 5362 4.041075 TGTTGTCTATGTACCCACACATGT 59.959 41.667 0.00 0.00 39.46 3.21
2890 5363 4.391830 GTGTTGTCTATGTACCCACACATG 59.608 45.833 0.00 0.00 39.46 3.21
2891 5364 4.564821 GGTGTTGTCTATGTACCCACACAT 60.565 45.833 0.00 0.00 41.88 3.21
2892 5365 3.244284 GGTGTTGTCTATGTACCCACACA 60.244 47.826 0.00 0.00 37.54 3.72
2893 5366 3.244284 TGGTGTTGTCTATGTACCCACAC 60.244 47.826 0.00 0.00 37.54 3.82
2894 5367 2.973406 TGGTGTTGTCTATGTACCCACA 59.027 45.455 0.00 0.00 39.52 4.17
2895 5368 3.688694 TGGTGTTGTCTATGTACCCAC 57.311 47.619 0.00 0.00 0.00 4.61
2896 5369 3.585289 ACATGGTGTTGTCTATGTACCCA 59.415 43.478 0.00 0.00 32.41 4.51
2897 5370 4.189231 GACATGGTGTTGTCTATGTACCC 58.811 47.826 0.00 0.00 42.22 3.69
2898 5371 4.189231 GGACATGGTGTTGTCTATGTACC 58.811 47.826 0.00 0.00 44.39 3.34
2899 5372 4.081087 AGGGACATGGTGTTGTCTATGTAC 60.081 45.833 0.00 0.00 44.39 2.90
2900 5373 4.101114 AGGGACATGGTGTTGTCTATGTA 58.899 43.478 0.00 0.00 44.39 2.29
2901 5374 2.912956 AGGGACATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 44.39 2.29
2902 5375 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
2903 5376 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
2904 5377 3.786553 ACTAGGGACATGGTGTTGTCTA 58.213 45.455 0.00 0.00 44.39 2.59
2905 5378 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
2906 5379 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
2907 5380 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
2908 5381 3.270877 GCTTACTAGGGACATGGTGTTG 58.729 50.000 0.00 0.00 0.00 3.33
2909 5382 2.238898 GGCTTACTAGGGACATGGTGTT 59.761 50.000 0.00 0.00 0.00 3.32
2910 5383 1.838077 GGCTTACTAGGGACATGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
2911 5384 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
2912 5385 2.022918 AGAGGCTTACTAGGGACATGGT 60.023 50.000 0.00 0.00 0.00 3.55
2913 5386 2.683768 AGAGGCTTACTAGGGACATGG 58.316 52.381 0.00 0.00 0.00 3.66
2914 5387 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
2915 5388 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
2916 5389 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
2917 5390 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
2918 5391 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
2919 5392 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
2920 5393 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
2921 5394 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
2922 5395 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
2923 5396 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
2924 5397 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
2925 5398 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
2926 5399 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
2927 5400 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
2928 5401 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
2929 5402 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
2930 5403 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
2931 5404 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
2932 5405 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
2933 5406 5.048294 TGTTGATCAACGAGCTAGTCAACTA 60.048 40.000 28.55 7.59 43.38 2.24
2934 5407 4.238514 GTTGATCAACGAGCTAGTCAACT 58.761 43.478 22.09 0.00 41.13 3.16
2935 5408 3.987868 TGTTGATCAACGAGCTAGTCAAC 59.012 43.478 28.55 16.99 43.94 3.18
2936 5409 4.022329 TCTGTTGATCAACGAGCTAGTCAA 60.022 41.667 28.55 10.18 43.94 3.18
2937 5410 3.506067 TCTGTTGATCAACGAGCTAGTCA 59.494 43.478 28.55 10.88 43.94 3.41
2938 5411 4.098055 TCTGTTGATCAACGAGCTAGTC 57.902 45.455 28.55 6.98 43.94 2.59
2939 5412 4.428209 CATCTGTTGATCAACGAGCTAGT 58.572 43.478 28.55 13.33 43.94 2.57
2940 5413 3.801050 CCATCTGTTGATCAACGAGCTAG 59.199 47.826 28.55 20.93 43.94 3.42
2941 5414 3.195610 ACCATCTGTTGATCAACGAGCTA 59.804 43.478 28.55 13.42 43.94 3.32
2942 5415 2.027745 ACCATCTGTTGATCAACGAGCT 60.028 45.455 28.55 17.34 43.94 4.09
2943 5416 2.350522 ACCATCTGTTGATCAACGAGC 58.649 47.619 28.55 10.03 43.94 5.03
2944 5417 4.031765 CGTAACCATCTGTTGATCAACGAG 59.968 45.833 28.55 24.84 43.94 4.18
2945 5418 3.924073 CGTAACCATCTGTTGATCAACGA 59.076 43.478 28.55 26.46 43.94 3.85
2946 5419 3.062099 CCGTAACCATCTGTTGATCAACG 59.938 47.826 28.55 23.04 43.94 4.10
2947 5420 4.000988 ACCGTAACCATCTGTTGATCAAC 58.999 43.478 28.10 28.10 37.83 3.18
2948 5421 4.280436 ACCGTAACCATCTGTTGATCAA 57.720 40.909 3.38 3.38 37.83 2.57
2949 5422 3.973206 ACCGTAACCATCTGTTGATCA 57.027 42.857 0.00 0.00 37.83 2.92
2950 5423 4.094442 GGAAACCGTAACCATCTGTTGATC 59.906 45.833 0.00 0.00 37.83 2.92
2951 5424 4.007659 GGAAACCGTAACCATCTGTTGAT 58.992 43.478 0.00 0.00 37.83 2.57
2952 5425 3.071892 AGGAAACCGTAACCATCTGTTGA 59.928 43.478 0.00 0.00 37.83 3.18
2953 5426 3.188460 CAGGAAACCGTAACCATCTGTTG 59.812 47.826 0.00 0.00 37.83 3.33
2954 5427 3.071892 TCAGGAAACCGTAACCATCTGTT 59.928 43.478 0.00 0.00 41.11 3.16
2955 5428 2.635915 TCAGGAAACCGTAACCATCTGT 59.364 45.455 0.00 0.00 0.00 3.41
2956 5429 3.000727 GTCAGGAAACCGTAACCATCTG 58.999 50.000 0.00 0.00 0.00 2.90
2957 5430 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
2958 5431 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
2959 5432 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
2960 5433 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
2961 5434 2.081462 CATGGTCAGGAAACCGTAACC 58.919 52.381 0.00 0.00 42.62 2.85
2962 5435 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
2963 5436 1.979308 TCCATGGTCAGGAAACCGTAA 59.021 47.619 12.58 0.00 42.62 3.18
2964 5437 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
2965 5438 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
2966 5439 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
2967 5440 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
2968 5441 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
2969 5442 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
2970 5443 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
2971 5444 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
2972 5445 2.304092 CATCCAATGTCCATGGTCAGG 58.696 52.381 16.79 13.14 39.09 3.86
2973 5446 3.008835 ACATCCAATGTCCATGGTCAG 57.991 47.619 16.79 4.75 39.92 3.51
2984 5457 4.875536 TCCTGTTATCAACGACATCCAATG 59.124 41.667 0.00 0.00 0.00 2.82
2985 5458 5.097742 TCCTGTTATCAACGACATCCAAT 57.902 39.130 0.00 0.00 0.00 3.16
2986 5459 4.545208 TCCTGTTATCAACGACATCCAA 57.455 40.909 0.00 0.00 0.00 3.53
2987 5460 4.161377 TGATCCTGTTATCAACGACATCCA 59.839 41.667 0.00 0.00 32.97 3.41
2988 5461 4.508124 GTGATCCTGTTATCAACGACATCC 59.492 45.833 0.00 0.00 37.61 3.51
2989 5462 5.109210 TGTGATCCTGTTATCAACGACATC 58.891 41.667 0.00 0.00 37.61 3.06
2990 5463 5.084818 TGTGATCCTGTTATCAACGACAT 57.915 39.130 0.00 0.00 37.61 3.06
2991 5464 4.529109 TGTGATCCTGTTATCAACGACA 57.471 40.909 0.00 0.00 37.61 4.35
2992 5465 5.109210 TGATGTGATCCTGTTATCAACGAC 58.891 41.667 0.00 0.00 37.61 4.34
2993 5466 5.337578 TGATGTGATCCTGTTATCAACGA 57.662 39.130 0.00 0.00 37.61 3.85
2994 5467 6.609237 AATGATGTGATCCTGTTATCAACG 57.391 37.500 0.00 0.00 37.61 4.10
2995 5468 7.933577 TCCTAATGATGTGATCCTGTTATCAAC 59.066 37.037 0.00 0.00 37.61 3.18
2996 5469 8.033178 TCCTAATGATGTGATCCTGTTATCAA 57.967 34.615 0.00 0.00 37.61 2.57
2997 5470 7.510343 TCTCCTAATGATGTGATCCTGTTATCA 59.490 37.037 0.00 0.00 33.48 2.15
2998 5471 7.901029 TCTCCTAATGATGTGATCCTGTTATC 58.099 38.462 0.00 0.00 0.00 1.75
2999 5472 7.862274 TCTCCTAATGATGTGATCCTGTTAT 57.138 36.000 0.00 0.00 0.00 1.89
3000 5473 7.675161 TTCTCCTAATGATGTGATCCTGTTA 57.325 36.000 0.00 0.00 0.00 2.41
3001 5474 6.566079 TTCTCCTAATGATGTGATCCTGTT 57.434 37.500 0.00 0.00 0.00 3.16
3002 5475 6.328410 TCATTCTCCTAATGATGTGATCCTGT 59.672 38.462 0.00 0.00 32.21 4.00
3003 5476 6.766429 TCATTCTCCTAATGATGTGATCCTG 58.234 40.000 0.00 0.00 32.21 3.86
3004 5477 7.571071 ATCATTCTCCTAATGATGTGATCCT 57.429 36.000 11.39 0.00 43.52 3.24
3012 5485 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
3013 5486 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
3014 5487 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
3015 5488 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
3016 5489 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
3017 5490 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
3018 5491 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
3019 5492 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
3020 5493 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
3021 5494 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
3022 5495 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
3023 5496 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
3024 5497 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
3025 5498 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
3026 5499 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
3027 5500 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
3028 5501 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
3029 5502 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
3030 5503 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
3031 5504 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
3032 5505 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
3033 5506 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
3034 5507 2.644676 GCTTAGGATTGGGTCTTGTCC 58.355 52.381 0.00 0.00 0.00 4.02
3035 5508 2.239907 AGGCTTAGGATTGGGTCTTGTC 59.760 50.000 0.00 0.00 0.00 3.18
3036 5509 2.279173 AGGCTTAGGATTGGGTCTTGT 58.721 47.619 0.00 0.00 0.00 3.16
3037 5510 3.745797 GCTAGGCTTAGGATTGGGTCTTG 60.746 52.174 4.88 0.00 0.00 3.02
3038 5511 2.439880 GCTAGGCTTAGGATTGGGTCTT 59.560 50.000 4.88 0.00 0.00 3.01
3039 5512 2.050918 GCTAGGCTTAGGATTGGGTCT 58.949 52.381 4.88 0.00 0.00 3.85
3040 5513 1.768870 TGCTAGGCTTAGGATTGGGTC 59.231 52.381 4.88 0.00 0.00 4.46
3041 5514 1.490910 GTGCTAGGCTTAGGATTGGGT 59.509 52.381 4.88 0.00 29.47 4.51
3042 5515 1.490490 TGTGCTAGGCTTAGGATTGGG 59.510 52.381 4.88 0.00 29.47 4.12
3043 5516 3.281727 TTGTGCTAGGCTTAGGATTGG 57.718 47.619 4.88 0.00 29.47 3.16
3044 5517 4.517285 TCTTTGTGCTAGGCTTAGGATTG 58.483 43.478 4.88 0.00 29.47 2.67
3045 5518 4.844349 TCTTTGTGCTAGGCTTAGGATT 57.156 40.909 4.88 0.00 29.47 3.01
3046 5519 4.502259 CGATCTTTGTGCTAGGCTTAGGAT 60.502 45.833 4.88 0.00 29.47 3.24
3047 5520 3.181475 CGATCTTTGTGCTAGGCTTAGGA 60.181 47.826 4.88 0.00 0.00 2.94
3048 5521 3.126831 CGATCTTTGTGCTAGGCTTAGG 58.873 50.000 4.88 0.00 0.00 2.69
3049 5522 3.786635 ACGATCTTTGTGCTAGGCTTAG 58.213 45.455 0.00 0.00 0.00 2.18
3050 5523 3.887621 ACGATCTTTGTGCTAGGCTTA 57.112 42.857 0.00 0.00 0.00 3.09
3051 5524 2.770164 ACGATCTTTGTGCTAGGCTT 57.230 45.000 0.00 0.00 0.00 4.35
3052 5525 2.761208 ACTACGATCTTTGTGCTAGGCT 59.239 45.455 0.00 0.00 0.00 4.58
3053 5526 3.166489 ACTACGATCTTTGTGCTAGGC 57.834 47.619 0.00 0.00 0.00 3.93
3054 5527 3.791887 CGAACTACGATCTTTGTGCTAGG 59.208 47.826 0.00 0.00 45.77 3.02
3055 5528 4.413087 ACGAACTACGATCTTTGTGCTAG 58.587 43.478 0.00 0.00 45.77 3.42
3056 5529 4.430137 ACGAACTACGATCTTTGTGCTA 57.570 40.909 0.00 0.00 45.77 3.49
3057 5530 3.299340 ACGAACTACGATCTTTGTGCT 57.701 42.857 0.00 0.00 45.77 4.40
3058 5531 4.548346 GCATACGAACTACGATCTTTGTGC 60.548 45.833 0.00 0.00 45.77 4.57
3059 5532 4.798907 AGCATACGAACTACGATCTTTGTG 59.201 41.667 0.00 0.00 45.77 3.33
3060 5533 4.995124 AGCATACGAACTACGATCTTTGT 58.005 39.130 0.00 0.00 45.77 2.83
3061 5534 7.445900 TTTAGCATACGAACTACGATCTTTG 57.554 36.000 0.00 0.00 45.77 2.77
3062 5535 6.198591 GCTTTAGCATACGAACTACGATCTTT 59.801 38.462 0.00 0.00 42.05 2.52
3063 5536 5.686397 GCTTTAGCATACGAACTACGATCTT 59.314 40.000 0.00 0.00 42.05 2.40
3064 5537 5.008811 AGCTTTAGCATACGAACTACGATCT 59.991 40.000 4.33 0.00 43.82 2.75
3065 5538 5.213675 AGCTTTAGCATACGAACTACGATC 58.786 41.667 4.33 0.00 43.82 3.69
3066 5539 5.184340 AGCTTTAGCATACGAACTACGAT 57.816 39.130 4.33 0.00 43.82 3.73
3067 5540 4.627611 AGCTTTAGCATACGAACTACGA 57.372 40.909 4.33 0.00 43.82 3.43
3068 5541 5.697848 AAAGCTTTAGCATACGAACTACG 57.302 39.130 10.72 0.00 45.16 3.51
3069 5542 7.292129 AGAAAAGCTTTAGCATACGAACTAC 57.708 36.000 13.10 0.00 45.16 2.73
3070 5543 8.991243 TTAGAAAAGCTTTAGCATACGAACTA 57.009 30.769 13.10 1.92 45.16 2.24
3071 5544 7.900782 TTAGAAAAGCTTTAGCATACGAACT 57.099 32.000 13.10 0.00 45.16 3.01
3072 5545 7.640240 CCATTAGAAAAGCTTTAGCATACGAAC 59.360 37.037 13.10 0.00 45.16 3.95
3073 5546 7.678690 GCCATTAGAAAAGCTTTAGCATACGAA 60.679 37.037 13.10 3.87 45.16 3.85
3074 5547 6.238374 GCCATTAGAAAAGCTTTAGCATACGA 60.238 38.462 13.10 0.00 45.16 3.43
3075 5548 5.909610 GCCATTAGAAAAGCTTTAGCATACG 59.090 40.000 13.10 0.00 45.16 3.06
3076 5549 6.795399 TGCCATTAGAAAAGCTTTAGCATAC 58.205 36.000 13.10 0.00 45.16 2.39
3077 5550 7.122650 ACTTGCCATTAGAAAAGCTTTAGCATA 59.877 33.333 13.10 0.54 45.16 3.14
3078 5551 5.920193 TGCCATTAGAAAAGCTTTAGCAT 57.080 34.783 13.10 0.00 45.16 3.79
3079 5552 5.243730 ACTTGCCATTAGAAAAGCTTTAGCA 59.756 36.000 13.10 9.99 45.16 3.49
3080 5553 5.714047 ACTTGCCATTAGAAAAGCTTTAGC 58.286 37.500 13.10 7.97 42.49 3.09
3081 5554 8.677300 TGATACTTGCCATTAGAAAAGCTTTAG 58.323 33.333 13.10 4.47 0.00 1.85
3082 5555 8.574251 TGATACTTGCCATTAGAAAAGCTTTA 57.426 30.769 13.10 0.00 0.00 1.85
3083 5556 7.466746 TGATACTTGCCATTAGAAAAGCTTT 57.533 32.000 5.69 5.69 0.00 3.51
3084 5557 7.651027 ATGATACTTGCCATTAGAAAAGCTT 57.349 32.000 0.00 0.00 0.00 3.74
3085 5558 7.651027 AATGATACTTGCCATTAGAAAAGCT 57.349 32.000 0.00 0.00 31.83 3.74
3086 5559 7.436376 GGAAATGATACTTGCCATTAGAAAAGC 59.564 37.037 0.00 0.00 33.13 3.51
3087 5560 8.689972 AGGAAATGATACTTGCCATTAGAAAAG 58.310 33.333 0.00 0.00 33.13 2.27
3088 5561 8.593945 AGGAAATGATACTTGCCATTAGAAAA 57.406 30.769 0.00 0.00 33.13 2.29
3089 5562 8.593945 AAGGAAATGATACTTGCCATTAGAAA 57.406 30.769 0.00 0.00 33.13 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.