Multiple sequence alignment - TraesCS6B01G119500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G119500 chr6B 100.000 3093 0 0 2600 5692 114159100 114162192 0.000000e+00 5712.0
1 TraesCS6B01G119500 chr6B 100.000 2284 0 0 1 2284 114156501 114158784 0.000000e+00 4218.0
2 TraesCS6B01G119500 chr6B 98.182 55 1 0 3677 3731 18041523 18041469 4.690000e-16 97.1
3 TraesCS6B01G119500 chr6D 87.931 2784 243 53 2600 5338 45902888 45905623 0.000000e+00 3193.0
4 TraesCS6B01G119500 chr6D 86.317 2134 112 79 185 2233 45900736 45902774 0.000000e+00 2158.0
5 TraesCS6B01G119500 chr6D 91.189 227 12 4 2058 2284 137598216 137598434 9.270000e-78 302.0
6 TraesCS6B01G119500 chr6D 91.071 224 12 4 2061 2284 433573834 433573619 4.310000e-76 296.0
7 TraesCS6B01G119500 chr6D 80.669 269 27 13 5407 5651 45905642 45905909 9.740000e-43 185.0
8 TraesCS6B01G119500 chr6D 94.828 58 3 0 3671 3728 433213477 433213534 2.180000e-14 91.6
9 TraesCS6B01G119500 chr6D 100.000 36 0 0 150 185 45900676 45900711 3.680000e-07 67.6
10 TraesCS6B01G119500 chr6A 85.597 1583 144 35 3763 5310 60022486 60024019 0.000000e+00 1583.0
11 TraesCS6B01G119500 chr6A 92.891 1055 48 18 2600 3635 60021324 60022370 0.000000e+00 1507.0
12 TraesCS6B01G119500 chr6A 86.272 1486 82 46 89 1491 60019065 60020511 0.000000e+00 1502.0
13 TraesCS6B01G119500 chr6A 91.575 724 41 8 1514 2233 60020502 60021209 0.000000e+00 981.0
14 TraesCS6B01G119500 chr6A 86.000 250 19 6 4943 5191 60056610 60056844 2.630000e-63 254.0
15 TraesCS6B01G119500 chr3B 90.982 499 23 8 883 1381 704477424 704476948 0.000000e+00 652.0
16 TraesCS6B01G119500 chr2D 91.518 224 11 4 2061 2284 41557384 41557169 9.270000e-78 302.0
17 TraesCS6B01G119500 chr2D 90.749 227 13 4 2058 2284 6444578 6444796 4.310000e-76 296.0
18 TraesCS6B01G119500 chr2D 83.938 193 20 7 1866 2052 42426749 42426562 2.110000e-39 174.0
19 TraesCS6B01G119500 chr7D 91.071 224 12 4 2061 2284 602335824 602335609 4.310000e-76 296.0
20 TraesCS6B01G119500 chr3D 91.071 224 12 4 2061 2284 549879436 549879221 4.310000e-76 296.0
21 TraesCS6B01G119500 chr1D 91.071 224 12 4 2061 2284 9154867 9154652 4.310000e-76 296.0
22 TraesCS6B01G119500 chr1D 95.238 42 1 1 2600 2640 478688470 478688511 1.320000e-06 65.8
23 TraesCS6B01G119500 chrUn 91.031 223 12 4 2062 2284 69186900 69186686 1.550000e-75 294.0
24 TraesCS6B01G119500 chrUn 85.366 123 10 5 1661 1776 87480037 87480158 2.790000e-23 121.0
25 TraesCS6B01G119500 chrUn 92.857 42 2 1 2600 2640 339130173 339130132 6.160000e-05 60.2
26 TraesCS6B01G119500 chrUn 92.857 42 2 1 2600 2640 395146754 395146795 6.160000e-05 60.2
27 TraesCS6B01G119500 chrUn 92.857 42 2 1 2600 2640 452364232 452364191 6.160000e-05 60.2
28 TraesCS6B01G119500 chrUn 92.857 42 2 1 2600 2640 464676117 464676076 6.160000e-05 60.2
29 TraesCS6B01G119500 chr1B 94.444 144 7 1 1660 1803 601100500 601100642 2.670000e-53 220.0
30 TraesCS6B01G119500 chr2B 88.108 185 17 4 1660 1840 789983419 789983602 1.240000e-51 215.0
31 TraesCS6B01G119500 chr2B 88.202 178 16 3 1667 1840 790077622 790077798 2.080000e-49 207.0
32 TraesCS6B01G119500 chr4A 90.625 96 8 1 1660 1755 706701165 706701071 5.990000e-25 126.0
33 TraesCS6B01G119500 chr4A 98.113 53 1 0 3676 3728 576036369 576036421 6.070000e-15 93.5
34 TraesCS6B01G119500 chr7A 98.182 55 1 0 3677 3731 610080458 610080404 4.690000e-16 97.1
35 TraesCS6B01G119500 chr4D 95.082 61 2 1 3672 3731 448165110 448165050 1.690000e-15 95.3
36 TraesCS6B01G119500 chr4D 92.857 42 2 1 2600 2640 5121847 5121806 6.160000e-05 60.2
37 TraesCS6B01G119500 chr4D 92.857 42 2 1 2600 2640 8333279 8333320 6.160000e-05 60.2
38 TraesCS6B01G119500 chr5B 96.429 56 2 0 3677 3732 17770864 17770919 6.070000e-15 93.5
39 TraesCS6B01G119500 chr5B 91.429 70 2 3 3661 3728 683572113 683572180 6.070000e-15 93.5
40 TraesCS6B01G119500 chr5A 96.429 56 2 0 3676 3731 16634608 16634553 6.070000e-15 93.5
41 TraesCS6B01G119500 chr7B 90.909 66 4 1 3663 3728 637237443 637237506 2.830000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G119500 chr6B 114156501 114162192 5691 False 4965.00 5712 100.00000 1 5692 2 chr6B.!!$F1 5691
1 TraesCS6B01G119500 chr6D 45900676 45905909 5233 False 1400.90 3193 88.72925 150 5651 4 chr6D.!!$F3 5501
2 TraesCS6B01G119500 chr6A 60019065 60024019 4954 False 1393.25 1583 89.08375 89 5310 4 chr6A.!!$F2 5221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.029300 CCTCCAAACAACGCACACTG 59.971 55.0 0.00 0.00 0.00 3.66 F
53 54 0.034059 CACTGACAGGGTGACACCTC 59.966 60.0 23.72 14.15 39.34 3.85 F
219 250 0.034616 GGAAGGATGAGCCGATGAGG 59.965 60.0 0.00 0.00 43.43 3.86 F
351 408 0.249447 GTGCAAAGGGTGGAAGCAAC 60.249 55.0 0.00 0.00 36.91 4.17 F
1671 1816 0.315886 CAGCAGCAACTTTGGCATCA 59.684 50.0 0.00 0.00 0.00 3.07 F
3198 3365 0.404040 TGGAGCCCGTTTCCAGATTT 59.596 50.0 0.00 0.00 39.74 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1545 0.846427 AGATGATGGTGGTGGTGGGT 60.846 55.000 0.00 0.0 0.00 4.51 R
1414 1546 1.134098 GTAGATGATGGTGGTGGTGGG 60.134 57.143 0.00 0.0 0.00 4.61 R
1421 1561 1.487976 AGCAGTGGTAGATGATGGTGG 59.512 52.381 0.00 0.0 0.00 4.61 R
2236 2391 1.133792 ACTGCCCTGCTTGTGTTTAGT 60.134 47.619 0.00 0.0 0.00 2.24 R
3360 3534 1.202222 GCACAGGAATCCAATTCAGCG 60.202 52.381 0.61 0.0 41.03 5.18 R
4733 4962 0.171231 GCCTTTTTGCGTGGAGGATC 59.829 55.000 0.71 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.734843 TTTACTTTACTTTGCCCCTCCT 57.265 40.909 0.00 0.00 0.00 3.69
22 23 2.881111 ACTTTACTTTGCCCCTCCTC 57.119 50.000 0.00 0.00 0.00 3.71
23 24 1.354705 ACTTTACTTTGCCCCTCCTCC 59.645 52.381 0.00 0.00 0.00 4.30
24 25 1.354368 CTTTACTTTGCCCCTCCTCCA 59.646 52.381 0.00 0.00 0.00 3.86
25 26 1.451449 TTACTTTGCCCCTCCTCCAA 58.549 50.000 0.00 0.00 0.00 3.53
26 27 1.451449 TACTTTGCCCCTCCTCCAAA 58.549 50.000 0.00 0.00 0.00 3.28
27 28 0.178961 ACTTTGCCCCTCCTCCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
28 29 0.178964 CTTTGCCCCTCCTCCAAACA 60.179 55.000 0.00 0.00 0.00 2.83
29 30 0.263172 TTTGCCCCTCCTCCAAACAA 59.737 50.000 0.00 0.00 0.00 2.83
30 31 0.469144 TTGCCCCTCCTCCAAACAAC 60.469 55.000 0.00 0.00 0.00 3.32
31 32 1.971695 GCCCCTCCTCCAAACAACG 60.972 63.158 0.00 0.00 0.00 4.10
32 33 1.971695 CCCCTCCTCCAAACAACGC 60.972 63.158 0.00 0.00 0.00 4.84
33 34 1.228124 CCCTCCTCCAAACAACGCA 60.228 57.895 0.00 0.00 0.00 5.24
34 35 1.515521 CCCTCCTCCAAACAACGCAC 61.516 60.000 0.00 0.00 0.00 5.34
35 36 0.817634 CCTCCTCCAAACAACGCACA 60.818 55.000 0.00 0.00 0.00 4.57
36 37 0.307760 CTCCTCCAAACAACGCACAC 59.692 55.000 0.00 0.00 0.00 3.82
37 38 0.107410 TCCTCCAAACAACGCACACT 60.107 50.000 0.00 0.00 0.00 3.55
38 39 0.029300 CCTCCAAACAACGCACACTG 59.971 55.000 0.00 0.00 0.00 3.66
39 40 1.013596 CTCCAAACAACGCACACTGA 58.986 50.000 0.00 0.00 0.00 3.41
40 41 0.730265 TCCAAACAACGCACACTGAC 59.270 50.000 0.00 0.00 0.00 3.51
41 42 0.449786 CCAAACAACGCACACTGACA 59.550 50.000 0.00 0.00 0.00 3.58
42 43 1.531677 CCAAACAACGCACACTGACAG 60.532 52.381 0.00 0.00 0.00 3.51
43 44 0.732571 AAACAACGCACACTGACAGG 59.267 50.000 7.51 0.00 0.00 4.00
44 45 1.095228 AACAACGCACACTGACAGGG 61.095 55.000 2.23 2.23 0.00 4.45
45 46 1.523711 CAACGCACACTGACAGGGT 60.524 57.895 3.94 3.94 26.76 4.34
51 52 1.830145 ACACTGACAGGGTGACACC 59.170 57.895 16.86 16.86 38.01 4.16
52 53 0.691078 ACACTGACAGGGTGACACCT 60.691 55.000 23.72 4.43 43.08 4.00
53 54 0.034059 CACTGACAGGGTGACACCTC 59.966 60.000 23.72 14.15 39.34 3.85
54 55 0.105453 ACTGACAGGGTGACACCTCT 60.105 55.000 23.72 15.85 39.34 3.69
55 56 0.605589 CTGACAGGGTGACACCTCTC 59.394 60.000 23.72 15.14 39.34 3.20
56 57 0.188587 TGACAGGGTGACACCTCTCT 59.811 55.000 23.72 10.15 39.34 3.10
57 58 0.892063 GACAGGGTGACACCTCTCTC 59.108 60.000 23.72 12.33 39.34 3.20
58 59 0.485099 ACAGGGTGACACCTCTCTCT 59.515 55.000 23.72 9.41 39.34 3.10
59 60 1.181786 CAGGGTGACACCTCTCTCTC 58.818 60.000 23.72 5.66 39.34 3.20
60 61 1.080638 AGGGTGACACCTCTCTCTCT 58.919 55.000 23.72 7.95 38.64 3.10
61 62 1.005450 AGGGTGACACCTCTCTCTCTC 59.995 57.143 23.72 4.20 38.64 3.20
62 63 1.005450 GGGTGACACCTCTCTCTCTCT 59.995 57.143 23.72 0.00 38.64 3.10
63 64 2.365582 GGTGACACCTCTCTCTCTCTC 58.634 57.143 17.84 0.00 34.73 3.20
64 65 2.026262 GGTGACACCTCTCTCTCTCTCT 60.026 54.545 17.84 0.00 34.73 3.10
65 66 3.270877 GTGACACCTCTCTCTCTCTCTC 58.729 54.545 0.00 0.00 0.00 3.20
66 67 3.055094 GTGACACCTCTCTCTCTCTCTCT 60.055 52.174 0.00 0.00 0.00 3.10
67 68 3.197766 TGACACCTCTCTCTCTCTCTCTC 59.802 52.174 0.00 0.00 0.00 3.20
68 69 3.452627 GACACCTCTCTCTCTCTCTCTCT 59.547 52.174 0.00 0.00 0.00 3.10
69 70 3.452627 ACACCTCTCTCTCTCTCTCTCTC 59.547 52.174 0.00 0.00 0.00 3.20
70 71 3.708631 CACCTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
71 72 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
72 73 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
73 74 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
74 75 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
75 76 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
76 77 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
77 78 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
78 79 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
79 80 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
80 81 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
81 82 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
82 83 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
83 84 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
84 85 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
85 86 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
86 87 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
87 88 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
119 125 5.508200 AATGAGAGCTTCGGTTCTACTAG 57.492 43.478 0.00 0.00 35.67 2.57
138 144 9.144298 TCTACTAGAGTGGATTGGTAATAAAGG 57.856 37.037 0.00 0.00 30.33 3.11
140 146 7.793036 ACTAGAGTGGATTGGTAATAAAGGAC 58.207 38.462 0.00 0.00 0.00 3.85
144 150 4.334481 GTGGATTGGTAATAAAGGACACCG 59.666 45.833 0.00 0.00 33.55 4.94
211 242 0.530870 GGTGCGTAGGAAGGATGAGC 60.531 60.000 0.00 0.00 0.00 4.26
212 243 0.530870 GTGCGTAGGAAGGATGAGCC 60.531 60.000 0.00 0.00 0.00 4.70
214 245 1.735376 GCGTAGGAAGGATGAGCCGA 61.735 60.000 0.00 0.00 43.43 5.54
215 246 0.962489 CGTAGGAAGGATGAGCCGAT 59.038 55.000 0.00 0.00 43.43 4.18
216 247 1.336332 CGTAGGAAGGATGAGCCGATG 60.336 57.143 0.00 0.00 43.43 3.84
217 248 1.964223 GTAGGAAGGATGAGCCGATGA 59.036 52.381 0.00 0.00 43.43 2.92
219 250 0.034616 GGAAGGATGAGCCGATGAGG 59.965 60.000 0.00 0.00 43.43 3.86
220 251 1.043816 GAAGGATGAGCCGATGAGGA 58.956 55.000 0.00 0.00 45.00 3.71
225 256 1.459455 ATGAGCCGATGAGGAGGACG 61.459 60.000 0.00 0.00 45.00 4.79
226 257 2.835431 AGCCGATGAGGAGGACGG 60.835 66.667 0.00 0.00 45.00 4.79
227 258 2.833582 GCCGATGAGGAGGACGGA 60.834 66.667 0.00 0.00 46.94 4.69
228 259 2.203771 GCCGATGAGGAGGACGGAT 61.204 63.158 0.00 0.00 46.94 4.18
288 330 2.841442 ACCCCACGAAGAAGAAGAAG 57.159 50.000 0.00 0.00 0.00 2.85
291 333 3.067833 CCCCACGAAGAAGAAGAAGAAC 58.932 50.000 0.00 0.00 0.00 3.01
351 408 0.249447 GTGCAAAGGGTGGAAGCAAC 60.249 55.000 0.00 0.00 36.91 4.17
424 496 2.657459 TCCCCTCCTCTCTTCTTCTTCT 59.343 50.000 0.00 0.00 0.00 2.85
430 502 5.716703 CCTCCTCTCTTCTTCTTCTTCTTCT 59.283 44.000 0.00 0.00 0.00 2.85
431 503 6.889722 CCTCCTCTCTTCTTCTTCTTCTTCTA 59.110 42.308 0.00 0.00 0.00 2.10
433 505 6.661805 TCCTCTCTTCTTCTTCTTCTTCTACC 59.338 42.308 0.00 0.00 0.00 3.18
434 506 6.663523 CCTCTCTTCTTCTTCTTCTTCTACCT 59.336 42.308 0.00 0.00 0.00 3.08
435 507 7.178451 CCTCTCTTCTTCTTCTTCTTCTACCTT 59.822 40.741 0.00 0.00 0.00 3.50
436 508 8.485578 TCTCTTCTTCTTCTTCTTCTACCTTT 57.514 34.615 0.00 0.00 0.00 3.11
437 509 9.589461 TCTCTTCTTCTTCTTCTTCTACCTTTA 57.411 33.333 0.00 0.00 0.00 1.85
452 524 4.595254 ACCTTTATTATCTCCCCCTCCT 57.405 45.455 0.00 0.00 0.00 3.69
454 526 4.175065 ACCTTTATTATCTCCCCCTCCTCT 59.825 45.833 0.00 0.00 0.00 3.69
542 648 1.567537 CGTTTGGTACTGGCACACG 59.432 57.895 0.00 0.00 0.00 4.49
569 675 4.158764 TGTTTGTTCGTTTCTTCCATGGTT 59.841 37.500 12.58 0.00 0.00 3.67
609 728 2.225963 GTGAGAACGACGAAGAGAGGAA 59.774 50.000 0.00 0.00 0.00 3.36
613 732 0.894184 ACGACGAAGAGAGGAAGGCA 60.894 55.000 0.00 0.00 0.00 4.75
656 775 2.111384 TCTATCCTGTGACTCCAAGCC 58.889 52.381 0.00 0.00 0.00 4.35
705 828 2.509964 ACCCACACTGTTTCTTCTTCCT 59.490 45.455 0.00 0.00 0.00 3.36
719 842 2.829639 CTTCCTCTCCCCTGCCCTGA 62.830 65.000 0.00 0.00 0.00 3.86
779 902 3.943034 TTGGTTGCAACGACGCCG 61.943 61.111 22.67 0.00 42.50 6.46
800 923 3.136123 CCTCCTGCCGCATTGTGG 61.136 66.667 12.04 12.04 36.10 4.17
849 972 3.004734 GACGCGCACACAAGAGAGC 62.005 63.158 5.73 0.00 0.00 4.09
850 973 3.782244 CGCGCACACAAGAGAGCC 61.782 66.667 8.75 0.00 0.00 4.70
853 976 2.675056 CGCACACAAGAGAGCCAGC 61.675 63.158 0.00 0.00 0.00 4.85
897 1026 1.660560 CTCCGCATTGCCCCAAGAAG 61.661 60.000 2.41 0.00 0.00 2.85
1257 1389 1.441515 GCTGCTGTACGACGACGAA 60.442 57.895 15.32 0.00 42.66 3.85
1401 1533 5.183530 TCTACTACTACACCCAGTAAGCA 57.816 43.478 0.00 0.00 30.77 3.91
1403 1535 5.826737 TCTACTACTACACCCAGTAAGCATC 59.173 44.000 0.00 0.00 30.77 3.91
1413 1545 1.833630 CAGTAAGCATCCCTCCACTCA 59.166 52.381 0.00 0.00 0.00 3.41
1414 1546 1.834263 AGTAAGCATCCCTCCACTCAC 59.166 52.381 0.00 0.00 0.00 3.51
1421 1561 2.750350 CCTCCACTCACCCACCAC 59.250 66.667 0.00 0.00 0.00 4.16
1424 1564 2.113139 CCACTCACCCACCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
1446 1586 3.276857 CATCATCTACCACTGCTTGCTT 58.723 45.455 0.00 0.00 0.00 3.91
1563 1706 7.598759 TGCAAAGTTGGGTTAAAGGTTTATA 57.401 32.000 0.00 0.00 0.00 0.98
1616 1761 9.521503 GATTAAAATCCTTGAGGCTGTAAATTC 57.478 33.333 0.00 0.00 34.44 2.17
1650 1795 1.159285 CAGCAGTGTATGTGGTGTGG 58.841 55.000 0.00 0.00 38.37 4.17
1671 1816 0.315886 CAGCAGCAACTTTGGCATCA 59.684 50.000 0.00 0.00 0.00 3.07
1726 1871 2.048723 AGGGGAAGGGAATAAAGGGAGA 59.951 50.000 0.00 0.00 0.00 3.71
1953 2107 5.389859 TGGTTGTCAATGCATTTTAGAGG 57.610 39.130 9.83 0.00 0.00 3.69
1968 2122 7.223387 GCATTTTAGAGGCAGTTTTATTCATGG 59.777 37.037 0.00 0.00 0.00 3.66
1982 2137 7.701539 TTTATTCATGGTGCAGTACTTCATT 57.298 32.000 0.00 0.00 0.00 2.57
2008 2163 7.630242 TTAATATTTGGAACTTGCCTCTCAG 57.370 36.000 0.00 0.00 0.00 3.35
2103 2258 6.214412 TCACTGGTATTTATTTTTGGGGCATT 59.786 34.615 0.00 0.00 0.00 3.56
2105 2260 7.494298 CACTGGTATTTATTTTTGGGGCATTAC 59.506 37.037 0.00 0.00 0.00 1.89
2142 2297 2.089201 TCTTGATGGATGCAGTGCTTG 58.911 47.619 17.60 0.00 0.00 4.01
2162 2317 9.736023 GTGCTTGAATTTAATAATCAGTAAGGG 57.264 33.333 0.00 0.00 0.00 3.95
2170 2325 9.965902 ATTTAATAATCAGTAAGGGCCTCATAG 57.034 33.333 6.46 0.00 0.00 2.23
2237 2392 6.961359 TGTGCAGTACAATATCACAACTAC 57.039 37.500 0.00 0.00 36.06 2.73
2238 2393 6.697395 TGTGCAGTACAATATCACAACTACT 58.303 36.000 0.00 0.00 36.06 2.57
2239 2394 7.832769 TGTGCAGTACAATATCACAACTACTA 58.167 34.615 0.00 0.00 36.06 1.82
2240 2395 8.308207 TGTGCAGTACAATATCACAACTACTAA 58.692 33.333 0.00 0.00 36.06 2.24
2241 2396 9.146984 GTGCAGTACAATATCACAACTACTAAA 57.853 33.333 0.00 0.00 0.00 1.85
2242 2397 9.146984 TGCAGTACAATATCACAACTACTAAAC 57.853 33.333 0.00 0.00 0.00 2.01
2243 2398 9.146984 GCAGTACAATATCACAACTACTAAACA 57.853 33.333 0.00 0.00 0.00 2.83
2265 2420 3.957586 CAGGGCAGTGCTGTGGGA 61.958 66.667 16.11 0.00 0.00 4.37
2266 2421 3.177884 AGGGCAGTGCTGTGGGAA 61.178 61.111 16.11 0.00 0.00 3.97
2685 2844 4.641396 TGCAAAGCTGTGATACTACTTGT 58.359 39.130 8.49 0.00 0.00 3.16
2688 2847 5.179368 GCAAAGCTGTGATACTACTTGTTGA 59.821 40.000 8.49 0.00 0.00 3.18
2697 2856 6.649141 GTGATACTACTTGTTGATGTTGGTGA 59.351 38.462 0.00 0.00 0.00 4.02
2700 2859 5.437060 ACTACTTGTTGATGTTGGTGACTT 58.563 37.500 0.00 0.00 0.00 3.01
2766 2931 5.869579 AGTGGTTGTTCAACTGTCTATCAT 58.130 37.500 14.04 0.00 0.00 2.45
2839 3005 3.513515 AGTCTGTCTCCTCACTGATTTCC 59.486 47.826 0.00 0.00 0.00 3.13
2841 3007 3.766591 TCTGTCTCCTCACTGATTTCCTC 59.233 47.826 0.00 0.00 0.00 3.71
2842 3008 3.510459 TGTCTCCTCACTGATTTCCTCA 58.490 45.455 0.00 0.00 0.00 3.86
2844 3010 5.272402 TGTCTCCTCACTGATTTCCTCATA 58.728 41.667 0.00 0.00 32.10 2.15
2863 3029 4.471025 TCATACACAATGATGAGTGTCCCT 59.529 41.667 7.12 0.00 45.16 4.20
2877 3043 1.063492 TGTCCCTACGGCCTCTATCAA 60.063 52.381 0.00 0.00 0.00 2.57
2888 3054 3.118261 GGCCTCTATCAATGTCCTCACAA 60.118 47.826 0.00 0.00 35.64 3.33
2903 3069 6.655003 TGTCCTCACAATCCTTATCTGAAAAC 59.345 38.462 0.00 0.00 0.00 2.43
2927 3094 9.618890 AACACTATATGCTGTTATGTGAATTCT 57.381 29.630 7.05 0.00 0.00 2.40
3126 3293 4.868314 TCTGCAGATCATCTATCAGGTG 57.132 45.455 13.74 0.00 37.03 4.00
3191 3358 1.883021 CCAACATGGAGCCCGTTTC 59.117 57.895 0.00 0.00 40.96 2.78
3196 3363 3.820425 TGGAGCCCGTTTCCAGAT 58.180 55.556 0.00 0.00 39.74 2.90
3198 3365 0.404040 TGGAGCCCGTTTCCAGATTT 59.596 50.000 0.00 0.00 39.74 2.17
3199 3366 1.095600 GGAGCCCGTTTCCAGATTTC 58.904 55.000 0.00 0.00 34.74 2.17
3200 3367 1.613255 GGAGCCCGTTTCCAGATTTCA 60.613 52.381 0.00 0.00 34.74 2.69
3360 3534 8.040716 ACTAAAGTGTGTTTATAATGTGCTCC 57.959 34.615 0.00 0.00 0.00 4.70
3518 3692 2.165167 CTGAAGGCCTTGCTTGATCAA 58.835 47.619 26.25 8.12 0.00 2.57
3534 3708 6.588719 TTGATCAACTTTCTTTACCCCATG 57.411 37.500 3.38 0.00 0.00 3.66
3586 3760 6.094048 GCAGTAGCATCAGGAATAAAGACAAA 59.906 38.462 0.00 0.00 41.58 2.83
3589 3763 9.905713 AGTAGCATCAGGAATAAAGACAAATTA 57.094 29.630 0.00 0.00 0.00 1.40
3662 3878 4.332683 AGGGTCAGTAGATACTTCCACA 57.667 45.455 10.96 0.00 33.46 4.17
3667 3883 6.016108 GGGTCAGTAGATACTTCCACAGATAC 60.016 46.154 10.96 0.00 33.46 2.24
3673 3889 8.504409 AGTAGATACTTCCACAGATACTAACCT 58.496 37.037 0.00 0.00 31.13 3.50
3674 3890 9.790344 GTAGATACTTCCACAGATACTAACCTA 57.210 37.037 0.00 0.00 0.00 3.08
3676 3892 9.884814 AGATACTTCCACAGATACTAACCTAAT 57.115 33.333 0.00 0.00 0.00 1.73
3680 3896 9.668497 ACTTCCACAGATACTAACCTAATTTTC 57.332 33.333 0.00 0.00 0.00 2.29
3681 3897 8.712285 TTCCACAGATACTAACCTAATTTTCG 57.288 34.615 0.00 0.00 0.00 3.46
3682 3898 8.070034 TCCACAGATACTAACCTAATTTTCGA 57.930 34.615 0.00 0.00 0.00 3.71
3683 3899 8.533657 TCCACAGATACTAACCTAATTTTCGAA 58.466 33.333 0.00 0.00 0.00 3.71
3684 3900 9.158233 CCACAGATACTAACCTAATTTTCGAAA 57.842 33.333 6.47 6.47 0.00 3.46
3688 3904 9.392259 AGATACTAACCTAATTTTCGAAAAGGG 57.608 33.333 25.87 25.46 0.00 3.95
3689 3905 6.829229 ACTAACCTAATTTTCGAAAAGGGG 57.171 37.500 27.80 26.29 0.00 4.79
3690 3906 4.530710 AACCTAATTTTCGAAAAGGGGC 57.469 40.909 27.80 0.00 0.00 5.80
3691 3907 2.490509 ACCTAATTTTCGAAAAGGGGCG 59.509 45.455 27.80 18.16 0.00 6.13
3692 3908 2.526077 CTAATTTTCGAAAAGGGGCGC 58.474 47.619 25.87 0.00 0.00 6.53
3693 3909 0.966179 AATTTTCGAAAAGGGGCGCT 59.034 45.000 25.87 7.10 0.00 5.92
3694 3910 0.966179 ATTTTCGAAAAGGGGCGCTT 59.034 45.000 25.87 11.46 0.00 4.68
3695 3911 0.747852 TTTTCGAAAAGGGGCGCTTT 59.252 45.000 22.23 22.23 0.00 3.51
3696 3912 1.606903 TTTCGAAAAGGGGCGCTTTA 58.393 45.000 26.94 11.41 0.00 1.85
3697 3913 1.828979 TTCGAAAAGGGGCGCTTTAT 58.171 45.000 26.94 17.61 0.00 1.40
3698 3914 1.828979 TCGAAAAGGGGCGCTTTATT 58.171 45.000 26.94 14.56 0.00 1.40
3699 3915 2.988570 TCGAAAAGGGGCGCTTTATTA 58.011 42.857 26.94 13.79 0.00 0.98
3700 3916 2.679336 TCGAAAAGGGGCGCTTTATTAC 59.321 45.455 26.94 17.42 0.00 1.89
3701 3917 2.681344 CGAAAAGGGGCGCTTTATTACT 59.319 45.455 26.94 13.15 0.00 2.24
3702 3918 3.128068 CGAAAAGGGGCGCTTTATTACTT 59.872 43.478 26.94 12.46 0.00 2.24
3703 3919 4.333372 CGAAAAGGGGCGCTTTATTACTTA 59.667 41.667 26.94 0.00 0.00 2.24
3704 3920 5.163733 CGAAAAGGGGCGCTTTATTACTTAA 60.164 40.000 26.94 0.00 0.00 1.85
3705 3921 6.593268 AAAAGGGGCGCTTTATTACTTAAA 57.407 33.333 26.94 0.00 0.00 1.52
3706 3922 6.593268 AAAGGGGCGCTTTATTACTTAAAA 57.407 33.333 25.79 0.00 29.52 1.52
3707 3923 5.830000 AGGGGCGCTTTATTACTTAAAAG 57.170 39.130 7.64 0.00 36.09 2.27
3708 3924 4.643334 AGGGGCGCTTTATTACTTAAAAGG 59.357 41.667 7.64 0.00 34.07 3.11
3709 3925 4.400251 GGGGCGCTTTATTACTTAAAAGGT 59.600 41.667 7.64 0.00 34.07 3.50
3710 3926 5.105635 GGGGCGCTTTATTACTTAAAAGGTT 60.106 40.000 7.64 0.00 34.07 3.50
3711 3927 6.392354 GGGCGCTTTATTACTTAAAAGGTTT 58.608 36.000 7.64 0.00 34.07 3.27
3712 3928 7.362834 GGGGCGCTTTATTACTTAAAAGGTTTA 60.363 37.037 7.64 0.00 34.07 2.01
3713 3929 8.028354 GGGCGCTTTATTACTTAAAAGGTTTAA 58.972 33.333 7.64 0.00 34.07 1.52
3714 3930 9.069078 GGCGCTTTATTACTTAAAAGGTTTAAG 57.931 33.333 7.64 15.59 37.84 1.85
3715 3931 9.616634 GCGCTTTATTACTTAAAAGGTTTAAGT 57.383 29.630 22.74 22.74 44.59 2.24
3748 3964 4.608948 CTTCCAGTGAAGTTCCAGTAGT 57.391 45.455 0.00 0.00 42.55 2.73
3750 3966 6.287589 CTTCCAGTGAAGTTCCAGTAGTAT 57.712 41.667 0.00 0.00 42.55 2.12
3751 3967 6.681729 TTCCAGTGAAGTTCCAGTAGTATT 57.318 37.500 0.00 0.00 0.00 1.89
3753 3969 7.166691 TCCAGTGAAGTTCCAGTAGTATTAC 57.833 40.000 0.00 0.00 0.00 1.89
3754 3970 6.722590 TCCAGTGAAGTTCCAGTAGTATTACA 59.277 38.462 0.00 0.00 31.96 2.41
3755 3971 7.399191 TCCAGTGAAGTTCCAGTAGTATTACAT 59.601 37.037 0.00 0.00 31.96 2.29
3756 3972 8.041323 CCAGTGAAGTTCCAGTAGTATTACATT 58.959 37.037 0.00 0.00 31.96 2.71
3759 3975 9.865321 GTGAAGTTCCAGTAGTATTACATTACA 57.135 33.333 0.00 0.00 31.96 2.41
3794 4013 6.656632 TTACAACAGGTGATAATTGGCAAA 57.343 33.333 3.01 0.00 0.00 3.68
3797 4016 6.165577 ACAACAGGTGATAATTGGCAAATTC 58.834 36.000 3.01 2.21 37.23 2.17
3861 4080 6.123651 ACTAGTATTCTGACGTCTCCATCTT 58.876 40.000 17.92 0.75 0.00 2.40
3869 4090 3.181470 TGACGTCTCCATCTTTGTTGACA 60.181 43.478 17.92 0.00 0.00 3.58
3870 4091 3.131396 ACGTCTCCATCTTTGTTGACAC 58.869 45.455 0.00 0.00 0.00 3.67
3911 4132 2.526304 TGCTTACAGACTGCGTCTTT 57.474 45.000 1.25 5.74 41.37 2.52
3935 4156 4.467082 TGGTTCATCATTTTCCCATTCCTG 59.533 41.667 0.00 0.00 0.00 3.86
3941 4162 2.194201 TTTTCCCATTCCTGACCGTC 57.806 50.000 0.00 0.00 0.00 4.79
3959 4180 6.588756 TGACCGTCAAAGATTACAGTATGAAC 59.411 38.462 0.00 0.00 39.69 3.18
3965 4186 9.599322 GTCAAAGATTACAGTATGAACTTTGTG 57.401 33.333 1.02 0.00 41.50 3.33
3991 4212 9.294030 GAGTATTCTTGTAAATTTCATGGCTTG 57.706 33.333 0.00 0.00 0.00 4.01
3997 4218 8.028354 TCTTGTAAATTTCATGGCTTGTGTATG 58.972 33.333 0.00 0.00 0.00 2.39
4025 4246 7.395190 CATCTGATTGATGTTAACCCTTTCA 57.605 36.000 2.48 0.00 45.55 2.69
4030 4251 8.698973 TGATTGATGTTAACCCTTTCACTAAA 57.301 30.769 2.48 0.00 0.00 1.85
4049 4270 6.652481 CACTAAATTCATCCTTGTCTGACAGT 59.348 38.462 10.77 0.00 0.00 3.55
4069 4290 5.187772 ACAGTTACTGATAGGAATGCACTCA 59.812 40.000 20.07 0.00 35.18 3.41
4129 4350 1.066143 AGCCTGGTAAGTGGATGAACG 60.066 52.381 0.00 0.00 0.00 3.95
4134 4355 2.271800 GGTAAGTGGATGAACGCTGAG 58.728 52.381 0.00 0.00 0.00 3.35
4135 4356 2.353803 GGTAAGTGGATGAACGCTGAGT 60.354 50.000 0.00 0.00 0.00 3.41
4167 4389 2.004583 GCAAGTTGATGCATGCATGT 57.995 45.000 36.73 16.51 45.70 3.21
4168 4390 2.343101 GCAAGTTGATGCATGCATGTT 58.657 42.857 36.73 20.33 45.70 2.71
4169 4391 2.739913 GCAAGTTGATGCATGCATGTTT 59.260 40.909 36.73 20.56 45.70 2.83
4170 4392 3.187637 GCAAGTTGATGCATGCATGTTTT 59.812 39.130 36.73 20.89 45.70 2.43
4171 4393 4.319911 GCAAGTTGATGCATGCATGTTTTT 60.320 37.500 36.73 21.22 45.70 1.94
4210 4438 9.996554 TTACTCATCACTTCTGATTTCAACTTA 57.003 29.630 0.00 0.00 34.65 2.24
4211 4439 8.316640 ACTCATCACTTCTGATTTCAACTTAC 57.683 34.615 0.00 0.00 34.65 2.34
4214 4442 7.719193 TCATCACTTCTGATTTCAACTTACCAA 59.281 33.333 0.00 0.00 34.65 3.67
4217 4445 8.744652 TCACTTCTGATTTCAACTTACCAAAAA 58.255 29.630 0.00 0.00 0.00 1.94
4268 4496 6.643770 GGATCGCGTATTTCTTCCTTTATACA 59.356 38.462 5.77 0.00 0.00 2.29
4323 4551 3.197766 TGCATCTACTCCAACCTGGTAAG 59.802 47.826 0.00 0.79 39.03 2.34
4328 4556 3.207044 ACTCCAACCTGGTAAGATCCT 57.793 47.619 0.00 0.00 39.03 3.24
4340 4568 4.133078 GGTAAGATCCTCAGCTTCCATTG 58.867 47.826 0.00 0.00 28.83 2.82
4346 4574 0.034767 CTCAGCTTCCATTGCCTCCA 60.035 55.000 0.00 0.00 0.00 3.86
4357 4586 3.448301 CCATTGCCTCCATAGAGCAAAAA 59.552 43.478 0.30 0.00 38.96 1.94
4362 4591 6.247229 TGCCTCCATAGAGCAAAAATACTA 57.753 37.500 0.00 0.00 38.96 1.82
4363 4592 6.055588 TGCCTCCATAGAGCAAAAATACTAC 58.944 40.000 0.00 0.00 38.96 2.73
4398 4627 8.809159 ATCTTTCTATCACTGAACATATGTCG 57.191 34.615 9.23 3.66 0.00 4.35
4466 4695 1.080093 CTCGCGCCTCTGTGGTAAA 60.080 57.895 0.00 0.00 38.35 2.01
4472 4701 2.432444 CGCCTCTGTGGTAAATTCCAA 58.568 47.619 0.00 0.00 39.34 3.53
4500 4729 8.391075 ACCACCCTATAACATCAATTATTTCG 57.609 34.615 0.00 0.00 0.00 3.46
4510 4739 5.801947 ACATCAATTATTTCGCTGCTTTGTC 59.198 36.000 0.00 0.00 0.00 3.18
4611 4840 1.379044 ATGCAACTGCCCTGCTACC 60.379 57.895 0.00 0.00 40.59 3.18
4653 4882 2.127708 ACCTGAAACACCACCTTCTCT 58.872 47.619 0.00 0.00 0.00 3.10
4666 4895 2.646798 ACCTTCTCTCCAAGCATTTCCT 59.353 45.455 0.00 0.00 0.00 3.36
4688 4917 5.215069 CTGGATAGCATGGTCCTAGGATAT 58.785 45.833 16.27 10.11 35.49 1.63
4695 4924 5.490357 AGCATGGTCCTAGGATATTAGCATT 59.510 40.000 16.27 0.00 0.00 3.56
4732 4961 0.736672 GCCGGTCTTCTTCCTTCGAC 60.737 60.000 1.90 0.00 0.00 4.20
4733 4962 0.456312 CCGGTCTTCTTCCTTCGACG 60.456 60.000 0.00 0.00 0.00 5.12
4734 4963 0.520404 CGGTCTTCTTCCTTCGACGA 59.480 55.000 0.00 0.00 0.00 4.20
4773 5004 2.353889 CGATGTGAATTGGCAGGAAGAG 59.646 50.000 0.00 0.00 0.00 2.85
4776 5007 1.471684 GTGAATTGGCAGGAAGAGCAG 59.528 52.381 0.00 0.00 0.00 4.24
4781 5012 2.684843 GGCAGGAAGAGCAGCAACG 61.685 63.158 0.00 0.00 0.00 4.10
4783 5014 1.004560 CAGGAAGAGCAGCAACGGA 60.005 57.895 0.00 0.00 0.00 4.69
4789 5020 1.609208 AGAGCAGCAACGGAACAATT 58.391 45.000 0.00 0.00 0.00 2.32
4791 5022 1.001378 GAGCAGCAACGGAACAATTGT 60.001 47.619 4.92 4.92 0.00 2.71
4801 5032 0.939106 GAACAATTGTGGCGTGGCAC 60.939 55.000 18.54 18.54 0.00 5.01
4806 5037 1.323412 ATTGTGGCGTGGCACTAAAA 58.677 45.000 24.28 12.87 0.00 1.52
4807 5038 1.323412 TTGTGGCGTGGCACTAAAAT 58.677 45.000 24.28 0.00 0.00 1.82
4809 5040 0.732538 GTGGCGTGGCACTAAAATGC 60.733 55.000 18.16 10.14 45.34 3.56
4815 5046 4.476361 GCACTAAAATGCGTGGCC 57.524 55.556 0.00 0.00 35.50 5.36
4819 5050 0.965363 ACTAAAATGCGTGGCCTGGG 60.965 55.000 3.32 0.00 0.00 4.45
4853 5084 8.999431 TGTTTGCGAGAAATCTTAGTTTCTTAT 58.001 29.630 9.77 0.00 45.72 1.73
4863 5094 6.494893 TCTTAGTTTCTTATGCATTTGCGT 57.505 33.333 3.54 2.42 45.83 5.24
4865 5096 4.503741 AGTTTCTTATGCATTTGCGTGT 57.496 36.364 3.54 0.00 45.83 4.49
4872 5103 0.250252 TGCATTTGCGTGTCTCTCCA 60.250 50.000 0.00 0.00 45.83 3.86
4901 5134 2.731571 GGATAGGGGAGCGTGCACA 61.732 63.158 18.64 0.00 0.00 4.57
4904 5137 2.329539 ATAGGGGAGCGTGCACATGG 62.330 60.000 18.64 1.23 0.00 3.66
4912 5145 0.729140 GCGTGCACATGGCTTTACAC 60.729 55.000 18.64 0.00 45.15 2.90
4914 5147 2.073056 CGTGCACATGGCTTTACACTA 58.927 47.619 18.64 0.00 45.15 2.74
4916 5149 3.074412 GTGCACATGGCTTTACACTAGT 58.926 45.455 13.17 0.00 45.15 2.57
4917 5150 4.250464 GTGCACATGGCTTTACACTAGTA 58.750 43.478 13.17 0.00 45.15 1.82
4918 5151 4.876107 GTGCACATGGCTTTACACTAGTAT 59.124 41.667 13.17 0.00 45.15 2.12
4919 5152 6.046593 GTGCACATGGCTTTACACTAGTATA 58.953 40.000 13.17 0.00 45.15 1.47
4920 5153 6.201044 GTGCACATGGCTTTACACTAGTATAG 59.799 42.308 13.17 0.00 44.17 1.31
4924 5157 7.438459 CACATGGCTTTACACTAGTATAGGTTC 59.562 40.741 0.00 0.00 44.97 3.62
4932 5184 3.003068 CACTAGTATAGGTTCGTCACGGG 59.997 52.174 0.00 0.00 44.97 5.28
4937 5189 0.251121 TAGGTTCGTCACGGGTGGTA 60.251 55.000 0.00 0.00 0.00 3.25
5005 5258 9.745880 AAAGAAGAATGTGTACATATACCTACG 57.254 33.333 5.45 0.00 35.10 3.51
5100 5359 4.644685 TGTAGATCGTCTGATTGGTCATCA 59.355 41.667 0.00 0.00 39.82 3.07
5101 5360 4.952071 AGATCGTCTGATTGGTCATCAT 57.048 40.909 0.00 0.00 41.35 2.45
5102 5361 5.287674 AGATCGTCTGATTGGTCATCATT 57.712 39.130 0.00 0.00 41.35 2.57
5137 5396 2.198406 GTGGCTAATGTAATCGTCGCA 58.802 47.619 0.00 0.00 0.00 5.10
5174 5440 6.068010 TGTATAAACCTATGGGCTGGAAATG 58.932 40.000 0.00 0.00 35.63 2.32
5178 5444 1.202976 CCTATGGGCTGGAAATGGGAG 60.203 57.143 0.00 0.00 0.00 4.30
5189 5455 2.169144 GGAAATGGGAGCCTGAAAATGG 59.831 50.000 0.00 0.00 0.00 3.16
5215 5488 3.375782 AAGCTTGTGAACTGGAAATGC 57.624 42.857 0.00 0.00 0.00 3.56
5272 5545 9.029368 AGCTATATCTATTGATGTGCTTCTGTA 57.971 33.333 0.00 0.00 33.54 2.74
5292 5565 4.455533 TGTATGTGATTTTGCGCTCTTCTT 59.544 37.500 9.73 0.00 0.00 2.52
5315 5588 3.500680 GGAACAGACACAAAAATCGGCTA 59.499 43.478 0.00 0.00 0.00 3.93
5316 5589 4.464112 GAACAGACACAAAAATCGGCTAC 58.536 43.478 0.00 0.00 0.00 3.58
5321 5594 5.408604 CAGACACAAAAATCGGCTACTTAGT 59.591 40.000 0.00 0.00 0.00 2.24
5322 5595 5.995897 AGACACAAAAATCGGCTACTTAGTT 59.004 36.000 0.00 0.00 0.00 2.24
5324 5597 7.658575 AGACACAAAAATCGGCTACTTAGTTAA 59.341 33.333 0.00 0.00 0.00 2.01
5325 5598 7.803724 ACACAAAAATCGGCTACTTAGTTAAG 58.196 34.615 0.00 0.00 39.18 1.85
5326 5599 7.658575 ACACAAAAATCGGCTACTTAGTTAAGA 59.341 33.333 5.93 0.00 37.08 2.10
5327 5600 8.500773 CACAAAAATCGGCTACTTAGTTAAGAA 58.499 33.333 5.93 0.00 37.08 2.52
5328 5601 8.718734 ACAAAAATCGGCTACTTAGTTAAGAAG 58.281 33.333 5.93 0.00 37.08 2.85
5329 5602 8.932791 CAAAAATCGGCTACTTAGTTAAGAAGA 58.067 33.333 5.93 0.00 37.08 2.87
5330 5603 9.498176 AAAAATCGGCTACTTAGTTAAGAAGAA 57.502 29.630 5.93 0.00 37.08 2.52
5331 5604 9.668497 AAAATCGGCTACTTAGTTAAGAAGAAT 57.332 29.630 5.93 0.00 37.08 2.40
5332 5605 8.874744 AATCGGCTACTTAGTTAAGAAGAATC 57.125 34.615 5.93 0.00 37.08 2.52
5333 5606 7.642082 TCGGCTACTTAGTTAAGAAGAATCT 57.358 36.000 5.93 0.00 37.08 2.40
5335 5608 7.974501 TCGGCTACTTAGTTAAGAAGAATCTTG 59.025 37.037 0.00 0.00 45.47 3.02
5336 5609 7.254151 CGGCTACTTAGTTAAGAAGAATCTTGC 60.254 40.741 0.00 0.00 45.47 4.01
5337 5610 7.254151 GGCTACTTAGTTAAGAAGAATCTTGCG 60.254 40.741 0.00 0.00 45.47 4.85
5338 5611 6.410243 ACTTAGTTAAGAAGAATCTTGCGC 57.590 37.500 0.00 0.00 45.47 6.09
5339 5612 5.932303 ACTTAGTTAAGAAGAATCTTGCGCA 59.068 36.000 5.66 5.66 45.47 6.09
5340 5613 4.935885 AGTTAAGAAGAATCTTGCGCAG 57.064 40.909 11.31 5.25 45.47 5.18
5341 5614 3.686726 AGTTAAGAAGAATCTTGCGCAGG 59.313 43.478 14.22 14.22 45.47 4.85
5342 5615 0.807496 AAGAAGAATCTTGCGCAGGC 59.193 50.000 15.68 0.57 44.25 4.85
5343 5616 0.035630 AGAAGAATCTTGCGCAGGCT 60.036 50.000 15.68 1.32 40.82 4.58
5344 5617 0.376502 GAAGAATCTTGCGCAGGCTC 59.623 55.000 15.68 13.36 40.82 4.70
5345 5618 0.035630 AAGAATCTTGCGCAGGCTCT 60.036 50.000 15.68 15.40 40.82 4.09
5346 5619 0.743701 AGAATCTTGCGCAGGCTCTG 60.744 55.000 15.68 0.67 40.82 3.35
5353 5626 2.178890 GCGCAGGCTCTGATCTTGG 61.179 63.158 0.30 0.00 32.44 3.61
5373 5646 2.304092 GGACGAAAAAGGTGGTTTCCT 58.696 47.619 0.00 0.00 39.84 3.36
5374 5647 2.034179 GGACGAAAAAGGTGGTTTCCTG 59.966 50.000 0.00 0.00 37.93 3.86
5375 5648 2.946990 GACGAAAAAGGTGGTTTCCTGA 59.053 45.455 0.00 0.00 37.93 3.86
5376 5649 3.358118 ACGAAAAAGGTGGTTTCCTGAA 58.642 40.909 0.00 0.00 37.93 3.02
5377 5650 3.764972 ACGAAAAAGGTGGTTTCCTGAAA 59.235 39.130 0.00 0.00 37.93 2.69
5378 5651 4.221041 ACGAAAAAGGTGGTTTCCTGAAAA 59.779 37.500 0.00 0.00 37.93 2.29
5379 5652 5.105106 ACGAAAAAGGTGGTTTCCTGAAAAT 60.105 36.000 0.00 0.00 37.93 1.82
5380 5653 5.815222 CGAAAAAGGTGGTTTCCTGAAAATT 59.185 36.000 0.00 0.00 37.93 1.82
5381 5654 6.315144 CGAAAAAGGTGGTTTCCTGAAAATTT 59.685 34.615 0.00 0.00 37.93 1.82
5382 5655 7.465379 CGAAAAAGGTGGTTTCCTGAAAATTTC 60.465 37.037 0.00 0.00 37.93 2.17
5383 5656 4.584327 AGGTGGTTTCCTGAAAATTTCG 57.416 40.909 0.97 0.00 36.35 3.46
5384 5657 3.320826 AGGTGGTTTCCTGAAAATTTCGG 59.679 43.478 7.55 7.55 36.35 4.30
5385 5658 3.057019 GTGGTTTCCTGAAAATTTCGGC 58.943 45.455 8.97 0.00 34.66 5.54
5386 5659 2.962421 TGGTTTCCTGAAAATTTCGGCT 59.038 40.909 8.97 0.00 34.66 5.52
5387 5660 3.243704 TGGTTTCCTGAAAATTTCGGCTG 60.244 43.478 8.97 0.00 34.66 4.85
5388 5661 3.005367 GGTTTCCTGAAAATTTCGGCTGA 59.995 43.478 8.97 0.00 34.66 4.26
5389 5662 4.229876 GTTTCCTGAAAATTTCGGCTGAG 58.770 43.478 8.97 0.00 34.66 3.35
5390 5663 3.417069 TCCTGAAAATTTCGGCTGAGA 57.583 42.857 8.97 0.00 34.66 3.27
5391 5664 3.955471 TCCTGAAAATTTCGGCTGAGAT 58.045 40.909 8.97 0.00 34.66 2.75
5392 5665 3.691118 TCCTGAAAATTTCGGCTGAGATG 59.309 43.478 8.97 0.00 34.66 2.90
5393 5666 3.432782 CTGAAAATTTCGGCTGAGATGC 58.567 45.455 1.18 0.00 0.00 3.91
5401 5674 2.202987 GCTGAGATGCCTGGACGG 60.203 66.667 0.00 0.00 0.00 4.79
5443 5716 2.757077 CTTCCCGTCCAAGGCCTT 59.243 61.111 13.78 13.78 0.00 4.35
5444 5717 1.559065 CCTTCCCGTCCAAGGCCTTA 61.559 60.000 20.00 0.00 34.21 2.69
5447 5720 0.326927 TCCCGTCCAAGGCCTTAAAG 59.673 55.000 20.00 11.56 0.00 1.85
5451 5724 2.618045 CCGTCCAAGGCCTTAAAGATGT 60.618 50.000 20.00 0.00 0.00 3.06
5457 5730 4.706476 CCAAGGCCTTAAAGATGTTCATCA 59.294 41.667 20.00 0.00 0.00 3.07
5458 5731 5.163581 CCAAGGCCTTAAAGATGTTCATCAG 60.164 44.000 20.00 0.00 0.00 2.90
5459 5732 5.441718 AGGCCTTAAAGATGTTCATCAGA 57.558 39.130 0.00 0.00 0.00 3.27
5460 5733 6.011122 AGGCCTTAAAGATGTTCATCAGAT 57.989 37.500 0.00 3.73 0.00 2.90
5461 5734 6.430007 AGGCCTTAAAGATGTTCATCAGATT 58.570 36.000 0.00 8.81 0.00 2.40
5462 5735 6.320672 AGGCCTTAAAGATGTTCATCAGATTG 59.679 38.462 0.00 3.04 0.00 2.67
5468 5741 7.479897 AAAGATGTTCATCAGATTGAGATCG 57.520 36.000 14.05 0.00 37.37 3.69
5481 5754 1.202818 TGAGATCGAGCCTAGCTAGCA 60.203 52.381 18.83 1.62 39.88 3.49
5496 5790 3.264450 AGCTAGCAGTAACATGTCCCTTT 59.736 43.478 18.83 0.00 0.00 3.11
5497 5791 4.010349 GCTAGCAGTAACATGTCCCTTTT 58.990 43.478 10.63 0.00 0.00 2.27
5498 5792 4.095036 GCTAGCAGTAACATGTCCCTTTTC 59.905 45.833 10.63 0.00 0.00 2.29
5503 5797 4.459337 CAGTAACATGTCCCTTTTCCTTCC 59.541 45.833 0.00 0.00 0.00 3.46
5569 5867 0.107897 ATCATAGCCCGCGTTTGACA 60.108 50.000 4.92 0.00 0.00 3.58
5605 5903 6.655078 TCATTCATATGGATCTGACTCGAA 57.345 37.500 2.13 0.00 32.40 3.71
5640 5943 6.500049 GCTATAGGATAGGCCCTAATGATGAT 59.500 42.308 0.00 0.00 41.71 2.45
5641 5944 6.760440 ATAGGATAGGCCCTAATGATGATG 57.240 41.667 0.00 0.00 41.71 3.07
5651 5954 6.183360 GGCCCTAATGATGATGATGATGAATG 60.183 42.308 0.00 0.00 0.00 2.67
5652 5955 6.377429 GCCCTAATGATGATGATGATGAATGT 59.623 38.462 0.00 0.00 0.00 2.71
5653 5956 7.415318 GCCCTAATGATGATGATGATGAATGTC 60.415 40.741 0.00 0.00 0.00 3.06
5654 5957 7.201617 CCCTAATGATGATGATGATGAATGTCG 60.202 40.741 0.00 0.00 0.00 4.35
5655 5958 6.496338 AATGATGATGATGATGAATGTCGG 57.504 37.500 0.00 0.00 0.00 4.79
5656 5959 3.749609 TGATGATGATGATGAATGTCGGC 59.250 43.478 0.00 0.00 0.00 5.54
5657 5960 2.137523 TGATGATGATGAATGTCGGCG 58.862 47.619 0.00 0.00 0.00 6.46
5658 5961 1.462283 GATGATGATGAATGTCGGCGG 59.538 52.381 7.21 0.00 0.00 6.13
5659 5962 0.532640 TGATGATGAATGTCGGCGGG 60.533 55.000 7.21 0.00 0.00 6.13
5660 5963 0.249868 GATGATGAATGTCGGCGGGA 60.250 55.000 7.21 0.00 0.00 5.14
5661 5964 0.250038 ATGATGAATGTCGGCGGGAG 60.250 55.000 7.21 0.00 0.00 4.30
5662 5965 1.595382 GATGAATGTCGGCGGGAGG 60.595 63.158 7.21 0.00 0.00 4.30
5663 5966 2.996168 GATGAATGTCGGCGGGAGGG 62.996 65.000 7.21 0.00 0.00 4.30
5664 5967 3.782443 GAATGTCGGCGGGAGGGT 61.782 66.667 7.21 0.00 0.00 4.34
5665 5968 3.325201 GAATGTCGGCGGGAGGGTT 62.325 63.158 7.21 0.00 0.00 4.11
5666 5969 3.325201 AATGTCGGCGGGAGGGTTC 62.325 63.158 7.21 0.00 0.00 3.62
5668 5971 3.782443 GTCGGCGGGAGGGTTCAT 61.782 66.667 7.21 0.00 0.00 2.57
5669 5972 3.467226 TCGGCGGGAGGGTTCATC 61.467 66.667 7.21 0.00 0.00 2.92
5670 5973 4.891727 CGGCGGGAGGGTTCATCG 62.892 72.222 0.00 0.00 0.00 3.84
5671 5974 4.547367 GGCGGGAGGGTTCATCGG 62.547 72.222 0.00 0.00 0.00 4.18
5672 5975 3.467226 GCGGGAGGGTTCATCGGA 61.467 66.667 0.00 0.00 0.00 4.55
5673 5976 2.815308 CGGGAGGGTTCATCGGAG 59.185 66.667 0.00 0.00 0.00 4.63
5674 5977 2.058595 CGGGAGGGTTCATCGGAGT 61.059 63.158 0.00 0.00 0.00 3.85
5675 5978 1.823976 GGGAGGGTTCATCGGAGTC 59.176 63.158 0.00 0.00 0.00 3.36
5676 5979 1.437986 GGAGGGTTCATCGGAGTCG 59.562 63.158 0.00 0.00 37.82 4.18
5677 5980 1.437986 GAGGGTTCATCGGAGTCGG 59.562 63.158 0.00 0.00 36.95 4.79
5678 5981 1.000019 AGGGTTCATCGGAGTCGGA 60.000 57.895 2.53 2.53 36.95 4.55
5679 5982 1.141234 GGGTTCATCGGAGTCGGAC 59.859 63.158 2.02 0.00 36.95 4.79
5680 5983 1.601419 GGGTTCATCGGAGTCGGACA 61.601 60.000 11.27 0.00 36.95 4.02
5681 5984 0.460311 GGTTCATCGGAGTCGGACAT 59.540 55.000 11.27 0.00 36.95 3.06
5682 5985 1.560923 GTTCATCGGAGTCGGACATG 58.439 55.000 11.27 5.45 36.95 3.21
5683 5986 1.135083 GTTCATCGGAGTCGGACATGT 60.135 52.381 11.27 0.00 36.95 3.21
5684 5987 2.047002 TCATCGGAGTCGGACATGTA 57.953 50.000 11.27 0.00 36.95 2.29
5685 5988 2.583143 TCATCGGAGTCGGACATGTAT 58.417 47.619 11.27 0.00 36.95 2.29
5686 5989 3.746940 TCATCGGAGTCGGACATGTATA 58.253 45.455 11.27 0.00 36.95 1.47
5687 5990 4.332828 TCATCGGAGTCGGACATGTATAT 58.667 43.478 11.27 0.00 36.95 0.86
5688 5991 5.493809 TCATCGGAGTCGGACATGTATATA 58.506 41.667 11.27 0.00 36.95 0.86
5689 5992 5.353400 TCATCGGAGTCGGACATGTATATAC 59.647 44.000 11.27 5.89 36.95 1.47
5690 5993 4.903054 TCGGAGTCGGACATGTATATACT 58.097 43.478 13.89 0.00 36.95 2.12
5691 5994 6.041423 TCGGAGTCGGACATGTATATACTA 57.959 41.667 13.89 1.51 36.95 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.507869 GGAGGAGGGGCAAAGTAAAGTAAA 60.508 45.833 0.00 0.00 0.00 2.01
1 2 3.009805 GGAGGAGGGGCAAAGTAAAGTAA 59.990 47.826 0.00 0.00 0.00 2.24
2 3 2.574824 GGAGGAGGGGCAAAGTAAAGTA 59.425 50.000 0.00 0.00 0.00 2.24
3 4 1.354705 GGAGGAGGGGCAAAGTAAAGT 59.645 52.381 0.00 0.00 0.00 2.66
4 5 1.354368 TGGAGGAGGGGCAAAGTAAAG 59.646 52.381 0.00 0.00 0.00 1.85
5 6 1.451449 TGGAGGAGGGGCAAAGTAAA 58.549 50.000 0.00 0.00 0.00 2.01
6 7 1.451449 TTGGAGGAGGGGCAAAGTAA 58.549 50.000 0.00 0.00 0.00 2.24
7 8 1.074889 GTTTGGAGGAGGGGCAAAGTA 59.925 52.381 0.00 0.00 0.00 2.24
8 9 0.178961 GTTTGGAGGAGGGGCAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
9 10 0.178964 TGTTTGGAGGAGGGGCAAAG 60.179 55.000 0.00 0.00 0.00 2.77
10 11 0.263172 TTGTTTGGAGGAGGGGCAAA 59.737 50.000 0.00 0.00 0.00 3.68
11 12 0.469144 GTTGTTTGGAGGAGGGGCAA 60.469 55.000 0.00 0.00 0.00 4.52
12 13 1.152830 GTTGTTTGGAGGAGGGGCA 59.847 57.895 0.00 0.00 0.00 5.36
13 14 1.971695 CGTTGTTTGGAGGAGGGGC 60.972 63.158 0.00 0.00 0.00 5.80
14 15 1.971695 GCGTTGTTTGGAGGAGGGG 60.972 63.158 0.00 0.00 0.00 4.79
15 16 1.228124 TGCGTTGTTTGGAGGAGGG 60.228 57.895 0.00 0.00 0.00 4.30
16 17 0.817634 TGTGCGTTGTTTGGAGGAGG 60.818 55.000 0.00 0.00 0.00 4.30
17 18 0.307760 GTGTGCGTTGTTTGGAGGAG 59.692 55.000 0.00 0.00 0.00 3.69
18 19 0.107410 AGTGTGCGTTGTTTGGAGGA 60.107 50.000 0.00 0.00 0.00 3.71
19 20 0.029300 CAGTGTGCGTTGTTTGGAGG 59.971 55.000 0.00 0.00 0.00 4.30
20 21 1.013596 TCAGTGTGCGTTGTTTGGAG 58.986 50.000 0.00 0.00 0.00 3.86
21 22 0.730265 GTCAGTGTGCGTTGTTTGGA 59.270 50.000 0.00 0.00 0.00 3.53
22 23 0.449786 TGTCAGTGTGCGTTGTTTGG 59.550 50.000 0.00 0.00 0.00 3.28
23 24 1.531677 CCTGTCAGTGTGCGTTGTTTG 60.532 52.381 0.00 0.00 0.00 2.93
24 25 0.732571 CCTGTCAGTGTGCGTTGTTT 59.267 50.000 0.00 0.00 0.00 2.83
25 26 1.095228 CCCTGTCAGTGTGCGTTGTT 61.095 55.000 0.00 0.00 0.00 2.83
26 27 1.523711 CCCTGTCAGTGTGCGTTGT 60.524 57.895 0.00 0.00 0.00 3.32
27 28 1.523711 ACCCTGTCAGTGTGCGTTG 60.524 57.895 0.00 0.00 0.00 4.10
28 29 1.523711 CACCCTGTCAGTGTGCGTT 60.524 57.895 2.33 0.00 0.00 4.84
29 30 2.108976 CACCCTGTCAGTGTGCGT 59.891 61.111 2.33 0.00 0.00 5.24
30 31 1.956170 GTCACCCTGTCAGTGTGCG 60.956 63.158 10.32 0.00 36.58 5.34
31 32 1.146041 TGTCACCCTGTCAGTGTGC 59.854 57.895 10.32 6.73 36.58 4.57
32 33 0.532862 GGTGTCACCCTGTCAGTGTG 60.533 60.000 11.30 9.00 36.58 3.82
33 34 0.691078 AGGTGTCACCCTGTCAGTGT 60.691 55.000 18.80 0.00 39.75 3.55
34 35 0.034059 GAGGTGTCACCCTGTCAGTG 59.966 60.000 18.80 0.00 39.75 3.66
35 36 0.105453 AGAGGTGTCACCCTGTCAGT 60.105 55.000 18.80 0.00 39.75 3.41
36 37 0.605589 GAGAGGTGTCACCCTGTCAG 59.394 60.000 18.80 0.00 42.87 3.51
37 38 0.188587 AGAGAGGTGTCACCCTGTCA 59.811 55.000 18.80 0.00 45.13 3.58
38 39 0.892063 GAGAGAGGTGTCACCCTGTC 59.108 60.000 18.80 17.43 43.51 3.51
39 40 0.485099 AGAGAGAGGTGTCACCCTGT 59.515 55.000 18.80 13.25 39.75 4.00
40 41 1.181786 GAGAGAGAGGTGTCACCCTG 58.818 60.000 18.80 0.00 39.75 4.45
41 42 1.005450 GAGAGAGAGAGGTGTCACCCT 59.995 57.143 18.80 14.71 39.75 4.34
42 43 1.005450 AGAGAGAGAGAGGTGTCACCC 59.995 57.143 18.80 10.12 39.75 4.61
43 44 2.026262 AGAGAGAGAGAGAGGTGTCACC 60.026 54.545 14.68 14.68 38.99 4.02
44 45 3.055094 AGAGAGAGAGAGAGAGGTGTCAC 60.055 52.174 0.00 0.00 0.00 3.67
45 46 3.181329 AGAGAGAGAGAGAGAGGTGTCA 58.819 50.000 0.00 0.00 0.00 3.58
46 47 3.452627 AGAGAGAGAGAGAGAGAGGTGTC 59.547 52.174 0.00 0.00 0.00 3.67
47 48 3.452627 GAGAGAGAGAGAGAGAGAGGTGT 59.547 52.174 0.00 0.00 0.00 4.16
48 49 3.708631 AGAGAGAGAGAGAGAGAGAGGTG 59.291 52.174 0.00 0.00 0.00 4.00
49 50 3.964031 GAGAGAGAGAGAGAGAGAGAGGT 59.036 52.174 0.00 0.00 0.00 3.85
50 51 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
51 52 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
52 53 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
53 54 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
54 55 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
55 56 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
56 57 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
57 58 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
58 59 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
59 60 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
60 61 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
61 62 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
62 63 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
63 64 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
64 65 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
65 66 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
66 67 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
67 68 4.892345 TCAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
68 69 4.871822 TCAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
69 70 5.804944 ATCAGAGAGAGAGAGAGAGAGAG 57.195 47.826 0.00 0.00 0.00 3.20
70 71 5.662657 TCAATCAGAGAGAGAGAGAGAGAGA 59.337 44.000 0.00 0.00 0.00 3.10
71 72 5.922053 TCAATCAGAGAGAGAGAGAGAGAG 58.078 45.833 0.00 0.00 0.00 3.20
72 73 5.955961 TCAATCAGAGAGAGAGAGAGAGA 57.044 43.478 0.00 0.00 0.00 3.10
85 86 5.232626 CGAAGCTCTCATTTCTCAATCAGAG 59.767 44.000 0.00 0.00 46.14 3.35
86 87 5.107824 CGAAGCTCTCATTTCTCAATCAGA 58.892 41.667 0.00 0.00 0.00 3.27
87 88 4.270566 CCGAAGCTCTCATTTCTCAATCAG 59.729 45.833 0.00 0.00 0.00 2.90
105 106 5.450688 CCAATCCACTCTAGTAGAACCGAAG 60.451 48.000 0.64 0.00 0.00 3.79
119 125 5.589050 GGTGTCCTTTATTACCAATCCACTC 59.411 44.000 0.00 0.00 33.42 3.51
138 144 5.798434 GCCATTGTTAACTAAAATCGGTGTC 59.202 40.000 7.22 0.00 0.00 3.67
140 146 4.791163 CGCCATTGTTAACTAAAATCGGTG 59.209 41.667 7.22 6.13 0.00 4.94
144 150 5.060446 GCACACGCCATTGTTAACTAAAATC 59.940 40.000 7.22 0.00 0.00 2.17
211 242 1.542030 CTTATCCGTCCTCCTCATCGG 59.458 57.143 0.00 0.00 43.65 4.18
212 243 1.068194 GCTTATCCGTCCTCCTCATCG 60.068 57.143 0.00 0.00 0.00 3.84
214 245 0.962489 CGCTTATCCGTCCTCCTCAT 59.038 55.000 0.00 0.00 0.00 2.90
215 246 1.735376 GCGCTTATCCGTCCTCCTCA 61.735 60.000 0.00 0.00 0.00 3.86
216 247 1.007154 GCGCTTATCCGTCCTCCTC 60.007 63.158 0.00 0.00 0.00 3.71
217 248 2.499827 GGCGCTTATCCGTCCTCCT 61.500 63.158 7.64 0.00 0.00 3.69
219 250 2.354773 CGGCGCTTATCCGTCCTC 60.355 66.667 7.64 0.00 41.85 3.71
225 256 1.014564 GGCATCTACGGCGCTTATCC 61.015 60.000 6.90 0.00 0.00 2.59
226 257 1.014564 GGGCATCTACGGCGCTTATC 61.015 60.000 6.90 0.00 40.63 1.75
227 258 1.004918 GGGCATCTACGGCGCTTAT 60.005 57.895 6.90 0.00 40.63 1.73
228 259 2.420043 GGGCATCTACGGCGCTTA 59.580 61.111 6.90 0.00 40.63 3.09
288 330 4.061596 GGGGAATGAGATCGATCTTGTTC 58.938 47.826 27.90 28.05 37.25 3.18
291 333 4.314121 GAAGGGGAATGAGATCGATCTTG 58.686 47.826 27.90 0.00 37.25 3.02
327 380 2.672996 CCACCCTTTGCACCGGAG 60.673 66.667 9.46 0.00 0.00 4.63
328 381 2.690653 CTTCCACCCTTTGCACCGGA 62.691 60.000 9.46 0.00 0.00 5.14
330 383 2.919494 GCTTCCACCCTTTGCACCG 61.919 63.158 0.00 0.00 0.00 4.94
331 384 1.398958 TTGCTTCCACCCTTTGCACC 61.399 55.000 0.00 0.00 33.13 5.01
332 385 0.249447 GTTGCTTCCACCCTTTGCAC 60.249 55.000 0.00 0.00 33.13 4.57
333 386 0.685785 TGTTGCTTCCACCCTTTGCA 60.686 50.000 0.00 0.00 0.00 4.08
335 388 1.538849 GCTTGTTGCTTCCACCCTTTG 60.539 52.381 0.00 0.00 38.95 2.77
351 408 1.407979 GGGAATGAGATGCCTTGCTTG 59.592 52.381 0.00 0.00 0.00 4.01
405 477 4.352893 AGAAGAAGAAGAAGAGAGGAGGG 58.647 47.826 0.00 0.00 0.00 4.30
424 496 7.379139 AGGGGGAGATAATAAAGGTAGAAGAA 58.621 38.462 0.00 0.00 0.00 2.52
430 502 5.382048 AGAGGAGGGGGAGATAATAAAGGTA 59.618 44.000 0.00 0.00 0.00 3.08
431 503 4.175065 AGAGGAGGGGGAGATAATAAAGGT 59.825 45.833 0.00 0.00 0.00 3.50
433 505 4.464597 CGAGAGGAGGGGGAGATAATAAAG 59.535 50.000 0.00 0.00 0.00 1.85
434 506 4.417437 CGAGAGGAGGGGGAGATAATAAA 58.583 47.826 0.00 0.00 0.00 1.40
435 507 3.818294 GCGAGAGGAGGGGGAGATAATAA 60.818 52.174 0.00 0.00 0.00 1.40
436 508 2.291670 GCGAGAGGAGGGGGAGATAATA 60.292 54.545 0.00 0.00 0.00 0.98
437 509 1.551329 GCGAGAGGAGGGGGAGATAAT 60.551 57.143 0.00 0.00 0.00 1.28
452 524 3.215151 AGATAGATTCTTGGACGCGAGA 58.785 45.455 15.93 0.90 0.00 4.04
454 526 2.293677 GGAGATAGATTCTTGGACGCGA 59.706 50.000 15.93 0.00 33.74 5.87
531 637 1.876799 CAAACAATCCGTGTGCCAGTA 59.123 47.619 0.00 0.00 40.60 2.74
537 643 2.748461 ACGAACAAACAATCCGTGTG 57.252 45.000 0.00 0.00 40.60 3.82
542 648 4.927422 TGGAAGAAACGAACAAACAATCC 58.073 39.130 0.00 0.00 0.00 3.01
569 675 1.229428 CTCGCTCAAAGAAGCAACCA 58.771 50.000 0.00 0.00 42.62 3.67
613 732 2.227036 CCTGGTCTGGCTTGTCCCT 61.227 63.158 0.00 0.00 0.00 4.20
624 743 2.045524 CAGGATAGATGTGCCTGGTCT 58.954 52.381 0.00 0.00 44.24 3.85
656 775 2.273449 GGTGTGGGGAGATGCCAG 59.727 66.667 0.00 0.00 38.95 4.85
705 828 3.615811 AGGTCAGGGCAGGGGAGA 61.616 66.667 0.00 0.00 0.00 3.71
779 902 2.439156 AATGCGGCAGGAGGAAGC 60.439 61.111 9.25 0.00 0.00 3.86
781 904 1.675310 CACAATGCGGCAGGAGGAA 60.675 57.895 9.25 0.00 0.00 3.36
800 923 2.347731 CTAAAGAAGACGAAGGGTGGC 58.652 52.381 0.00 0.00 0.00 5.01
841 964 1.584380 GCTTGTGGCTGGCTCTCTTG 61.584 60.000 2.00 0.00 38.06 3.02
843 966 2.350514 GCTTGTGGCTGGCTCTCT 59.649 61.111 2.00 0.00 38.06 3.10
844 967 2.033141 TGCTTGTGGCTGGCTCTC 59.967 61.111 2.00 0.00 42.39 3.20
849 972 3.429141 CGCTCTGCTTGTGGCTGG 61.429 66.667 0.00 0.00 42.39 4.85
850 973 4.099170 GCGCTCTGCTTGTGGCTG 62.099 66.667 0.00 0.00 42.39 4.85
877 1006 2.045045 CTTGGGGCAATGCGGAGA 60.045 61.111 0.00 0.00 0.00 3.71
879 1008 1.678635 CTTCTTGGGGCAATGCGGA 60.679 57.895 0.00 0.00 0.00 5.54
919 1048 2.522193 GAGCGAGGAGGGTAGGGG 60.522 72.222 0.00 0.00 0.00 4.79
1137 1269 2.423446 CGCCAGATGAGGTAGGCC 59.577 66.667 0.00 0.00 44.18 5.19
1401 1533 1.616628 GGTGGGTGAGTGGAGGGAT 60.617 63.158 0.00 0.00 0.00 3.85
1403 1535 2.529136 TGGTGGGTGAGTGGAGGG 60.529 66.667 0.00 0.00 0.00 4.30
1413 1545 0.846427 AGATGATGGTGGTGGTGGGT 60.846 55.000 0.00 0.00 0.00 4.51
1414 1546 1.134098 GTAGATGATGGTGGTGGTGGG 60.134 57.143 0.00 0.00 0.00 4.61
1421 1561 1.487976 AGCAGTGGTAGATGATGGTGG 59.512 52.381 0.00 0.00 0.00 4.61
1424 1564 1.945394 GCAAGCAGTGGTAGATGATGG 59.055 52.381 0.00 0.00 0.00 3.51
1455 1595 6.944234 AAATCTTTCTTCGGAAACAGAGTT 57.056 33.333 0.00 0.00 38.81 3.01
1563 1706 7.037658 ACCTAAATAAATGGGAAATGCCAAAGT 60.038 33.333 0.00 0.00 38.95 2.66
1616 1761 2.359602 CTGGCTGCCACTCCAGTG 60.360 66.667 19.30 1.85 43.66 3.66
1636 1781 1.586154 GCTGGCCACACCACATACAC 61.586 60.000 0.00 0.00 46.36 2.90
1650 1795 2.356673 GCCAAAGTTGCTGCTGGC 60.357 61.111 13.13 13.13 46.95 4.85
1671 1816 7.630242 TTCAAATTCACAACAAGAGAGAACT 57.370 32.000 0.00 0.00 0.00 3.01
1805 1950 9.445878 GAAGATCAATATCAATGCAAGGAGATA 57.554 33.333 0.00 0.00 34.28 1.98
1808 1953 7.228906 ACAGAAGATCAATATCAATGCAAGGAG 59.771 37.037 0.00 0.00 34.28 3.69
1931 2085 4.321899 GCCTCTAAAATGCATTGACAACCA 60.322 41.667 13.82 0.00 0.00 3.67
1934 2088 4.523943 ACTGCCTCTAAAATGCATTGACAA 59.476 37.500 13.82 0.00 33.97 3.18
1953 2107 4.178545 ACTGCACCATGAATAAAACTGC 57.821 40.909 0.00 0.00 0.00 4.40
1982 2137 8.415950 TGAGAGGCAAGTTCCAAATATTAAAA 57.584 30.769 0.00 0.00 0.00 1.52
1993 2148 3.851051 CCTCTGAGAGGCAAGTTCC 57.149 57.895 16.73 0.00 43.29 3.62
2035 2190 6.120507 CCCCCAGAAAAATATTGGTTTCAA 57.879 37.500 12.81 0.00 36.41 2.69
2095 2250 2.240921 TCTACAATGCAGTAATGCCCCA 59.759 45.455 13.34 0.00 0.00 4.96
2103 2258 7.881775 TCAAGACTATCTCTACAATGCAGTA 57.118 36.000 0.00 0.00 0.00 2.74
2105 2260 6.645827 CCATCAAGACTATCTCTACAATGCAG 59.354 42.308 0.00 0.00 0.00 4.41
2142 2297 8.691661 TGAGGCCCTTACTGATTATTAAATTC 57.308 34.615 0.00 0.00 0.00 2.17
2162 2317 5.360591 ACAAAGCATGTACTACTATGAGGC 58.639 41.667 0.00 0.00 41.63 4.70
2233 2388 2.105821 TGCCCTGCTTGTGTTTAGTAGT 59.894 45.455 0.00 0.00 0.00 2.73
2234 2389 2.744202 CTGCCCTGCTTGTGTTTAGTAG 59.256 50.000 0.00 0.00 0.00 2.57
2235 2390 2.105821 ACTGCCCTGCTTGTGTTTAGTA 59.894 45.455 0.00 0.00 0.00 1.82
2236 2391 1.133792 ACTGCCCTGCTTGTGTTTAGT 60.134 47.619 0.00 0.00 0.00 2.24
2237 2392 1.267806 CACTGCCCTGCTTGTGTTTAG 59.732 52.381 0.00 0.00 32.60 1.85
2238 2393 1.317613 CACTGCCCTGCTTGTGTTTA 58.682 50.000 0.00 0.00 32.60 2.01
2239 2394 2.019897 GCACTGCCCTGCTTGTGTTT 62.020 55.000 11.86 0.00 36.63 2.83
2240 2395 2.492773 GCACTGCCCTGCTTGTGTT 61.493 57.895 11.86 0.00 36.63 3.32
2241 2396 2.908940 GCACTGCCCTGCTTGTGT 60.909 61.111 11.86 0.00 36.63 3.72
2242 2397 2.596631 AGCACTGCCCTGCTTGTG 60.597 61.111 0.00 7.89 45.64 3.33
2243 2398 2.596631 CAGCACTGCCCTGCTTGT 60.597 61.111 2.51 0.00 45.64 3.16
2630 2789 2.436542 TGCTACCAACCAGTTACACACT 59.563 45.455 0.00 0.00 35.35 3.55
2685 2844 3.554934 AGAGCAAAGTCACCAACATCAA 58.445 40.909 0.00 0.00 0.00 2.57
2688 2847 3.144506 CTGAGAGCAAAGTCACCAACAT 58.855 45.455 0.00 0.00 0.00 2.71
2841 3007 4.774124 AGGGACACTCATCATTGTGTATG 58.226 43.478 0.00 0.00 45.94 2.39
2842 3008 5.451937 CGTAGGGACACTCATCATTGTGTAT 60.452 44.000 0.00 0.00 45.94 2.29
2863 3029 2.891580 GAGGACATTGATAGAGGCCGTA 59.108 50.000 0.00 0.00 0.00 4.02
2877 3043 6.566079 TTCAGATAAGGATTGTGAGGACAT 57.434 37.500 0.00 0.00 30.13 3.06
2888 3054 9.499479 CAGCATATAGTGTTTTCAGATAAGGAT 57.501 33.333 0.00 0.00 0.00 3.24
3105 3272 4.477249 TCACCTGATAGATGATCTGCAGA 58.523 43.478 20.79 20.79 34.34 4.26
3146 3313 8.147704 CCAAACATTTCAAAGTTTATAGGTGGT 58.852 33.333 0.00 0.00 36.28 4.16
3147 3314 7.117667 GCCAAACATTTCAAAGTTTATAGGTGG 59.882 37.037 0.00 0.00 36.28 4.61
3148 3315 7.117667 GGCCAAACATTTCAAAGTTTATAGGTG 59.882 37.037 0.00 0.00 36.28 4.00
3191 3358 6.433404 CCCTCTCCAATATGAATGAAATCTGG 59.567 42.308 0.00 0.00 0.00 3.86
3193 3360 7.147248 TGTCCCTCTCCAATATGAATGAAATCT 60.147 37.037 0.00 0.00 0.00 2.40
3194 3361 7.000472 TGTCCCTCTCCAATATGAATGAAATC 59.000 38.462 0.00 0.00 0.00 2.17
3195 3362 6.914665 TGTCCCTCTCCAATATGAATGAAAT 58.085 36.000 0.00 0.00 0.00 2.17
3196 3363 6.325993 TGTCCCTCTCCAATATGAATGAAA 57.674 37.500 0.00 0.00 0.00 2.69
3198 3365 5.848369 AGATGTCCCTCTCCAATATGAATGA 59.152 40.000 0.00 0.00 0.00 2.57
3199 3366 5.938710 CAGATGTCCCTCTCCAATATGAATG 59.061 44.000 0.00 0.00 0.00 2.67
3200 3367 5.514484 GCAGATGTCCCTCTCCAATATGAAT 60.514 44.000 0.00 0.00 0.00 2.57
3265 3438 4.405358 TGAAAAGCAAAAATGAGACCACCT 59.595 37.500 0.00 0.00 0.00 4.00
3360 3534 1.202222 GCACAGGAATCCAATTCAGCG 60.202 52.381 0.61 0.00 41.03 5.18
3518 3692 4.993705 TGAGACATGGGGTAAAGAAAGT 57.006 40.909 0.00 0.00 0.00 2.66
3534 3708 1.673665 CCAGCCCTGCACTTGAGAC 60.674 63.158 0.00 0.00 0.00 3.36
3563 3737 8.814038 AATTTGTCTTTATTCCTGATGCTACT 57.186 30.769 0.00 0.00 0.00 2.57
3639 3855 5.834460 TGTGGAAGTATCTACTGACCCTTA 58.166 41.667 9.71 0.00 37.87 2.69
3645 3861 9.339850 GTTAGTATCTGTGGAAGTATCTACTGA 57.660 37.037 4.84 4.84 44.75 3.41
3646 3862 8.569641 GGTTAGTATCTGTGGAAGTATCTACTG 58.430 40.741 0.00 0.00 37.87 2.74
3655 3871 8.818057 CGAAAATTAGGTTAGTATCTGTGGAAG 58.182 37.037 0.00 0.00 0.00 3.46
3662 3878 9.392259 CCCTTTTCGAAAATTAGGTTAGTATCT 57.608 33.333 22.73 0.00 0.00 1.98
3667 3883 5.647589 GCCCCTTTTCGAAAATTAGGTTAG 58.352 41.667 22.73 12.40 0.00 2.34
3673 3889 2.164338 AGCGCCCCTTTTCGAAAATTA 58.836 42.857 22.73 2.11 0.00 1.40
3674 3890 0.966179 AGCGCCCCTTTTCGAAAATT 59.034 45.000 22.73 1.94 0.00 1.82
3676 3892 0.747852 AAAGCGCCCCTTTTCGAAAA 59.252 45.000 21.35 21.35 40.85 2.29
3677 3893 1.606903 TAAAGCGCCCCTTTTCGAAA 58.393 45.000 6.47 6.47 40.85 3.46
3679 3895 1.828979 AATAAAGCGCCCCTTTTCGA 58.171 45.000 2.29 0.00 40.85 3.71
3680 3896 2.681344 AGTAATAAAGCGCCCCTTTTCG 59.319 45.455 2.29 0.00 40.85 3.46
3681 3897 4.713824 AAGTAATAAAGCGCCCCTTTTC 57.286 40.909 2.29 0.00 40.85 2.29
3682 3898 6.593268 TTTAAGTAATAAAGCGCCCCTTTT 57.407 33.333 2.29 0.00 40.85 2.27
3683 3899 6.350696 CCTTTTAAGTAATAAAGCGCCCCTTT 60.351 38.462 2.29 0.06 45.44 3.11
3684 3900 5.126545 CCTTTTAAGTAATAAAGCGCCCCTT 59.873 40.000 2.29 0.00 35.03 3.95
3685 3901 4.643334 CCTTTTAAGTAATAAAGCGCCCCT 59.357 41.667 2.29 0.00 35.03 4.79
3686 3902 4.400251 ACCTTTTAAGTAATAAAGCGCCCC 59.600 41.667 2.29 0.00 35.03 5.80
3687 3903 5.571784 ACCTTTTAAGTAATAAAGCGCCC 57.428 39.130 2.29 0.00 35.03 6.13
3688 3904 8.969121 TTAAACCTTTTAAGTAATAAAGCGCC 57.031 30.769 2.29 0.00 35.03 6.53
3689 3905 9.616634 ACTTAAACCTTTTAAGTAATAAAGCGC 57.383 29.630 18.22 0.00 41.77 5.92
3699 3915 9.002600 CGGGTGTAATACTTAAACCTTTTAAGT 57.997 33.333 21.61 21.61 42.23 2.24
3700 3916 8.453320 CCGGGTGTAATACTTAAACCTTTTAAG 58.547 37.037 14.21 14.21 42.23 1.85
3701 3917 7.094420 GCCGGGTGTAATACTTAAACCTTTTAA 60.094 37.037 2.18 0.00 42.23 1.52
3702 3918 6.374053 GCCGGGTGTAATACTTAAACCTTTTA 59.626 38.462 2.18 0.00 42.23 1.52
3703 3919 5.183713 GCCGGGTGTAATACTTAAACCTTTT 59.816 40.000 2.18 0.00 42.23 2.27
3704 3920 4.701651 GCCGGGTGTAATACTTAAACCTTT 59.298 41.667 2.18 0.00 42.23 3.11
3705 3921 4.019051 AGCCGGGTGTAATACTTAAACCTT 60.019 41.667 4.72 0.00 42.23 3.50
3706 3922 3.520721 AGCCGGGTGTAATACTTAAACCT 59.479 43.478 4.72 0.00 42.23 3.50
3707 3923 3.877559 AGCCGGGTGTAATACTTAAACC 58.122 45.455 4.72 0.00 41.91 3.27
3708 3924 4.333649 GGAAGCCGGGTGTAATACTTAAAC 59.666 45.833 7.07 0.00 0.00 2.01
3709 3925 4.019501 TGGAAGCCGGGTGTAATACTTAAA 60.020 41.667 7.07 0.00 0.00 1.52
3710 3926 3.518705 TGGAAGCCGGGTGTAATACTTAA 59.481 43.478 7.07 0.00 0.00 1.85
3711 3927 3.106054 TGGAAGCCGGGTGTAATACTTA 58.894 45.455 7.07 0.00 0.00 2.24
3712 3928 1.910671 TGGAAGCCGGGTGTAATACTT 59.089 47.619 7.07 0.00 0.00 2.24
3713 3929 1.485066 CTGGAAGCCGGGTGTAATACT 59.515 52.381 7.07 0.00 0.00 2.12
3714 3930 1.208776 ACTGGAAGCCGGGTGTAATAC 59.791 52.381 7.07 0.00 37.60 1.89
3715 3931 1.208535 CACTGGAAGCCGGGTGTAATA 59.791 52.381 7.07 0.00 37.60 0.98
3716 3932 0.035439 CACTGGAAGCCGGGTGTAAT 60.035 55.000 7.07 0.00 37.60 1.89
3717 3933 1.122632 TCACTGGAAGCCGGGTGTAA 61.123 55.000 7.07 0.00 37.60 2.41
3718 3934 1.122632 TTCACTGGAAGCCGGGTGTA 61.123 55.000 7.07 0.00 37.60 2.90
3719 3935 2.397413 CTTCACTGGAAGCCGGGTGT 62.397 60.000 7.07 0.00 43.67 4.16
3720 3936 1.672356 CTTCACTGGAAGCCGGGTG 60.672 63.158 7.07 2.95 43.67 4.61
3721 3937 2.750350 CTTCACTGGAAGCCGGGT 59.250 61.111 0.00 0.00 43.67 5.28
3757 3973 9.787435 TCACCTGTTGTAATATTTTTCTACTGT 57.213 29.630 0.00 0.00 0.00 3.55
3828 4047 6.518493 ACGTCAGAATACTAGTTTGGTGAAA 58.482 36.000 0.00 0.00 0.00 2.69
3861 4080 3.181488 CCTGCATTTGTCTGTGTCAACAA 60.181 43.478 0.00 0.00 35.37 2.83
3869 4090 1.607467 GGCCCCTGCATTTGTCTGT 60.607 57.895 0.00 0.00 40.13 3.41
3870 4091 2.703798 CGGCCCCTGCATTTGTCTG 61.704 63.158 0.00 0.00 40.13 3.51
3911 4132 5.046448 CAGGAATGGGAAAATGATGAACCAA 60.046 40.000 0.00 0.00 0.00 3.67
3935 4156 6.812160 AGTTCATACTGTAATCTTTGACGGTC 59.188 38.462 0.00 0.00 36.56 4.79
3941 4162 9.817365 CTCACAAAGTTCATACTGTAATCTTTG 57.183 33.333 21.24 21.24 42.94 2.77
3965 4186 9.294030 CAAGCCATGAAATTTACAAGAATACTC 57.706 33.333 0.00 0.00 0.00 2.59
3969 4190 7.444299 ACACAAGCCATGAAATTTACAAGAAT 58.556 30.769 0.00 0.00 0.00 2.40
3971 4192 6.403866 ACACAAGCCATGAAATTTACAAGA 57.596 33.333 0.00 0.00 0.00 3.02
3972 4193 7.201461 GCATACACAAGCCATGAAATTTACAAG 60.201 37.037 0.00 0.00 0.00 3.16
3977 4198 5.149973 TGCATACACAAGCCATGAAATTT 57.850 34.783 0.00 0.00 0.00 1.82
3984 4205 3.568430 CAGATGATGCATACACAAGCCAT 59.432 43.478 0.00 0.00 0.00 4.40
4014 4235 8.802267 CAAGGATGAATTTAGTGAAAGGGTTAA 58.198 33.333 0.00 0.00 0.00 2.01
4018 4239 6.660949 AGACAAGGATGAATTTAGTGAAAGGG 59.339 38.462 0.00 0.00 0.00 3.95
4020 4241 8.233190 GTCAGACAAGGATGAATTTAGTGAAAG 58.767 37.037 0.00 0.00 0.00 2.62
4021 4242 7.719193 TGTCAGACAAGGATGAATTTAGTGAAA 59.281 33.333 0.00 0.00 0.00 2.69
4024 4245 6.652481 ACTGTCAGACAAGGATGAATTTAGTG 59.348 38.462 6.91 0.00 0.00 2.74
4025 4246 6.773638 ACTGTCAGACAAGGATGAATTTAGT 58.226 36.000 6.91 0.00 0.00 2.24
4030 4251 6.014242 TCAGTAACTGTCAGACAAGGATGAAT 60.014 38.462 6.91 0.00 32.61 2.57
4033 4254 5.139435 TCAGTAACTGTCAGACAAGGATG 57.861 43.478 6.91 0.94 32.61 3.51
4049 4270 5.939764 ACTGAGTGCATTCCTATCAGTAA 57.060 39.130 6.77 0.00 46.50 2.24
4069 4290 2.017049 AGCAAGAAAACAGCGTTGACT 58.983 42.857 6.16 0.00 0.00 3.41
4102 4323 5.903010 TCATCCACTTACCAGGCTATTTAGA 59.097 40.000 0.00 0.00 0.00 2.10
4129 4350 2.294233 TGCTTTGGTGATCAAACTCAGC 59.706 45.455 0.00 6.38 40.14 4.26
4134 4355 4.681744 TCAACTTGCTTTGGTGATCAAAC 58.318 39.130 0.00 0.00 40.14 2.93
4135 4356 4.998671 TCAACTTGCTTTGGTGATCAAA 57.001 36.364 0.00 0.00 42.50 2.69
4182 4404 9.342308 AGTTGAAATCAGAAGTGATGAGTAAAA 57.658 29.630 0.00 0.00 43.04 1.52
4191 4419 7.873719 TTTGGTAAGTTGAAATCAGAAGTGA 57.126 32.000 0.00 0.00 37.02 3.41
4210 4438 4.546570 GAAGCGCTGTAAGAATTTTTGGT 58.453 39.130 12.58 0.00 34.07 3.67
4211 4439 3.920412 GGAAGCGCTGTAAGAATTTTTGG 59.080 43.478 12.58 0.00 34.07 3.28
4214 4442 2.161609 CGGGAAGCGCTGTAAGAATTTT 59.838 45.455 12.58 0.00 34.07 1.82
4217 4445 0.249398 ACGGGAAGCGCTGTAAGAAT 59.751 50.000 12.58 0.00 34.07 2.40
4220 4448 2.100631 CCACGGGAAGCGCTGTAAG 61.101 63.158 12.58 6.13 0.00 2.34
4268 4496 2.671396 CTGGAAAACAACGTATAGCGCT 59.329 45.455 17.26 17.26 46.11 5.92
4323 4551 1.133853 AGGCAATGGAAGCTGAGGATC 60.134 52.381 0.00 0.00 0.00 3.36
4328 4556 0.627451 ATGGAGGCAATGGAAGCTGA 59.373 50.000 0.00 0.00 0.00 4.26
4340 4568 5.470437 GGTAGTATTTTTGCTCTATGGAGGC 59.530 44.000 8.31 1.20 39.80 4.70
4346 4574 9.799106 AATATGCAGGTAGTATTTTTGCTCTAT 57.201 29.630 0.00 0.00 35.85 1.98
4362 4591 8.874156 TCAGTGATAGAAAGATAATATGCAGGT 58.126 33.333 0.00 0.00 0.00 4.00
4363 4592 9.716531 TTCAGTGATAGAAAGATAATATGCAGG 57.283 33.333 0.00 0.00 0.00 4.85
4381 4610 5.072040 TCACACGACATATGTTCAGTGAT 57.928 39.130 29.74 18.72 34.63 3.06
4398 4627 0.883833 CCACCTGCCAGAATTCACAC 59.116 55.000 8.44 0.00 0.00 3.82
4466 4695 7.821566 TGATGTTATAGGGTGGTAATTGGAAT 58.178 34.615 0.00 0.00 0.00 3.01
4489 4718 5.181056 TCAGACAAAGCAGCGAAATAATTGA 59.819 36.000 0.00 0.00 0.00 2.57
4500 4729 2.065993 TCTACGTCAGACAAAGCAGC 57.934 50.000 0.41 0.00 0.00 5.25
4555 4784 3.975168 ACCTACGCAATAAGTTCAGGT 57.025 42.857 0.00 0.00 0.00 4.00
4611 4840 4.732672 TCATCACCAGTCTGAAGATCAG 57.267 45.455 0.00 0.88 45.59 2.90
4666 4895 3.567375 ATCCTAGGACCATGCTATCCA 57.433 47.619 15.42 0.00 37.47 3.41
4688 4917 3.438781 GGATGTTCGTTCACCAATGCTAA 59.561 43.478 0.00 0.00 0.00 3.09
4695 4924 1.164411 GCATGGATGTTCGTTCACCA 58.836 50.000 0.00 0.00 35.09 4.17
4732 4961 0.447801 CCTTTTTGCGTGGAGGATCG 59.552 55.000 0.00 0.00 34.37 3.69
4733 4962 0.171231 GCCTTTTTGCGTGGAGGATC 59.829 55.000 0.71 0.00 0.00 3.36
4734 4963 2.267045 GCCTTTTTGCGTGGAGGAT 58.733 52.632 0.71 0.00 0.00 3.24
4757 4988 1.830279 CTGCTCTTCCTGCCAATTCA 58.170 50.000 0.00 0.00 0.00 2.57
4773 5004 1.130955 CACAATTGTTCCGTTGCTGC 58.869 50.000 8.77 0.00 0.00 5.25
4776 5007 1.274798 CGCCACAATTGTTCCGTTGC 61.275 55.000 8.77 4.37 0.00 4.17
4781 5012 1.372872 GCCACGCCACAATTGTTCC 60.373 57.895 8.77 1.67 0.00 3.62
4783 5014 1.067250 GTGCCACGCCACAATTGTT 59.933 52.632 8.77 0.00 35.80 2.83
4789 5020 0.595588 CATTTTAGTGCCACGCCACA 59.404 50.000 4.60 0.00 38.18 4.17
4791 5022 1.583986 GCATTTTAGTGCCACGCCA 59.416 52.632 0.00 0.00 39.18 5.69
4801 5032 0.679640 TCCCAGGCCACGCATTTTAG 60.680 55.000 5.01 0.00 0.00 1.85
4806 5037 2.687200 TACTCCCAGGCCACGCAT 60.687 61.111 5.01 0.00 0.00 4.73
4807 5038 3.390521 CTACTCCCAGGCCACGCA 61.391 66.667 5.01 0.00 0.00 5.24
4809 5040 0.179073 CAATCTACTCCCAGGCCACG 60.179 60.000 5.01 0.00 0.00 4.94
4814 5045 2.009774 CGCAAACAATCTACTCCCAGG 58.990 52.381 0.00 0.00 0.00 4.45
4815 5046 2.932614 CTCGCAAACAATCTACTCCCAG 59.067 50.000 0.00 0.00 0.00 4.45
4819 5050 6.654793 AGATTTCTCGCAAACAATCTACTC 57.345 37.500 0.00 0.00 34.80 2.59
4853 5084 0.250252 TGGAGAGACACGCAAATGCA 60.250 50.000 6.18 0.00 42.21 3.96
4882 5115 2.364973 TGCACGCTCCCCTATCCA 60.365 61.111 0.00 0.00 0.00 3.41
4901 5134 6.323225 ACGAACCTATACTAGTGTAAAGCCAT 59.677 38.462 5.39 0.00 31.80 4.40
4904 5137 6.690528 GTGACGAACCTATACTAGTGTAAAGC 59.309 42.308 5.39 0.00 31.80 3.51
4912 5145 3.003068 CACCCGTGACGAACCTATACTAG 59.997 52.174 6.54 0.00 0.00 2.57
4914 5147 1.747355 CACCCGTGACGAACCTATACT 59.253 52.381 6.54 0.00 0.00 2.12
4916 5149 1.105457 CCACCCGTGACGAACCTATA 58.895 55.000 6.54 0.00 0.00 1.31
4917 5150 0.901580 ACCACCCGTGACGAACCTAT 60.902 55.000 6.54 0.00 0.00 2.57
4918 5151 0.251121 TACCACCCGTGACGAACCTA 60.251 55.000 6.54 0.00 0.00 3.08
4919 5152 1.114722 TTACCACCCGTGACGAACCT 61.115 55.000 6.54 0.00 0.00 3.50
4920 5153 0.668401 CTTACCACCCGTGACGAACC 60.668 60.000 6.54 0.00 0.00 3.62
4924 5157 0.599558 TCTTCTTACCACCCGTGACG 59.400 55.000 0.00 0.00 0.00 4.35
4932 5184 5.500645 ACTGCAAAAACTCTTCTTACCAC 57.499 39.130 0.00 0.00 0.00 4.16
4937 5189 5.067805 CCCAGTTACTGCAAAAACTCTTCTT 59.932 40.000 6.88 0.00 33.72 2.52
5005 5258 1.047801 ACCAACCAATCAACCAAGCC 58.952 50.000 0.00 0.00 0.00 4.35
5073 5329 5.869344 TGACCAATCAGACGATCTACAAAAG 59.131 40.000 0.00 0.00 0.00 2.27
5101 5360 9.030452 ACATTAGCCACAAAGGTAAATTGATAA 57.970 29.630 0.00 0.00 40.61 1.75
5102 5361 8.588290 ACATTAGCCACAAAGGTAAATTGATA 57.412 30.769 0.00 0.00 40.61 2.15
5115 5374 2.605818 GCGACGATTACATTAGCCACAA 59.394 45.455 0.00 0.00 0.00 3.33
5151 5417 5.476945 CCATTTCCAGCCCATAGGTTTATAC 59.523 44.000 0.00 0.00 34.57 1.47
5174 5440 0.684479 GTCCCCATTTTCAGGCTCCC 60.684 60.000 0.00 0.00 0.00 4.30
5178 5444 1.338105 GCTTTGTCCCCATTTTCAGGC 60.338 52.381 0.00 0.00 0.00 4.85
5189 5455 1.338020 CCAGTTCACAAGCTTTGTCCC 59.662 52.381 0.00 0.00 43.23 4.46
5215 5488 3.058160 CCCCTGCTTCCAGCGTTG 61.058 66.667 0.00 0.00 46.26 4.10
5233 5506 1.083489 TATAGCTTGTGCGGTTGTGC 58.917 50.000 0.00 0.00 45.42 4.57
5234 5507 3.198068 AGATATAGCTTGTGCGGTTGTG 58.802 45.455 0.00 0.00 45.42 3.33
5235 5508 3.543680 AGATATAGCTTGTGCGGTTGT 57.456 42.857 0.00 0.00 45.42 3.32
5236 5509 5.696270 TCAATAGATATAGCTTGTGCGGTTG 59.304 40.000 0.00 0.00 45.42 3.77
5238 5511 5.468540 TCAATAGATATAGCTTGTGCGGT 57.531 39.130 0.00 0.00 45.42 5.68
5240 5513 6.671641 GCACATCAATAGATATAGCTTGTGCG 60.672 42.308 22.02 7.99 35.74 5.34
5272 5545 3.366679 CCAAGAAGAGCGCAAAATCACAT 60.367 43.478 11.47 0.00 0.00 3.21
5292 5565 2.034053 GCCGATTTTTGTGTCTGTTCCA 59.966 45.455 0.00 0.00 0.00 3.53
5315 5588 5.932303 TGCGCAAGATTCTTCTTAACTAAGT 59.068 36.000 8.16 0.00 40.28 2.24
5316 5589 6.408858 TGCGCAAGATTCTTCTTAACTAAG 57.591 37.500 8.16 0.00 40.28 2.18
5321 5594 2.420022 GCCTGCGCAAGATTCTTCTTAA 59.580 45.455 13.05 0.00 40.28 1.85
5322 5595 2.009774 GCCTGCGCAAGATTCTTCTTA 58.990 47.619 13.05 0.00 40.28 2.10
5324 5597 0.035630 AGCCTGCGCAAGATTCTTCT 60.036 50.000 13.05 0.00 43.02 2.85
5325 5598 0.376502 GAGCCTGCGCAAGATTCTTC 59.623 55.000 13.05 0.00 43.02 2.87
5326 5599 0.035630 AGAGCCTGCGCAAGATTCTT 60.036 50.000 13.05 0.00 43.02 2.52
5327 5600 0.743701 CAGAGCCTGCGCAAGATTCT 60.744 55.000 13.05 9.55 43.02 2.40
5328 5601 0.742281 TCAGAGCCTGCGCAAGATTC 60.742 55.000 13.05 7.20 43.02 2.52
5329 5602 0.107312 ATCAGAGCCTGCGCAAGATT 60.107 50.000 13.05 0.00 43.02 2.40
5330 5603 0.532417 GATCAGAGCCTGCGCAAGAT 60.532 55.000 13.05 2.98 43.02 2.40
5331 5604 1.153489 GATCAGAGCCTGCGCAAGA 60.153 57.895 13.05 3.11 43.02 3.02
5332 5605 0.743701 AAGATCAGAGCCTGCGCAAG 60.744 55.000 13.05 6.59 37.52 4.01
5333 5606 1.022982 CAAGATCAGAGCCTGCGCAA 61.023 55.000 13.05 0.00 37.52 4.85
5334 5607 1.449070 CAAGATCAGAGCCTGCGCA 60.449 57.895 10.98 10.98 37.52 6.09
5335 5608 2.178890 CCAAGATCAGAGCCTGCGC 61.179 63.158 0.00 0.00 0.00 6.09
5336 5609 1.523258 CCCAAGATCAGAGCCTGCG 60.523 63.158 0.00 0.00 0.00 5.18
5337 5610 0.463474 GTCCCAAGATCAGAGCCTGC 60.463 60.000 0.00 0.00 0.00 4.85
5338 5611 0.179089 CGTCCCAAGATCAGAGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
5339 5612 0.324738 TCGTCCCAAGATCAGAGCCT 60.325 55.000 0.00 0.00 0.00 4.58
5340 5613 0.537188 TTCGTCCCAAGATCAGAGCC 59.463 55.000 0.00 0.00 0.00 4.70
5341 5614 2.386661 TTTCGTCCCAAGATCAGAGC 57.613 50.000 0.00 0.00 0.00 4.09
5342 5615 3.686726 CCTTTTTCGTCCCAAGATCAGAG 59.313 47.826 0.00 0.00 0.00 3.35
5343 5616 3.072476 ACCTTTTTCGTCCCAAGATCAGA 59.928 43.478 0.00 0.00 0.00 3.27
5344 5617 3.189287 CACCTTTTTCGTCCCAAGATCAG 59.811 47.826 0.00 0.00 0.00 2.90
5345 5618 3.146066 CACCTTTTTCGTCCCAAGATCA 58.854 45.455 0.00 0.00 0.00 2.92
5346 5619 2.488153 CCACCTTTTTCGTCCCAAGATC 59.512 50.000 0.00 0.00 0.00 2.75
5353 5626 2.034179 CAGGAAACCACCTTTTTCGTCC 59.966 50.000 0.00 0.00 38.32 4.79
5373 5646 2.164219 GGCATCTCAGCCGAAATTTTCA 59.836 45.455 9.66 0.00 46.12 2.69
5374 5647 2.802256 GGCATCTCAGCCGAAATTTTC 58.198 47.619 0.00 0.00 46.12 2.29
5375 5648 2.947448 GGCATCTCAGCCGAAATTTT 57.053 45.000 0.00 0.00 46.12 1.82
5384 5657 2.202987 CCGTCCAGGCATCTCAGC 60.203 66.667 0.00 0.00 0.00 4.26
5401 5674 1.785041 TACGTACGTAGGCCATCCGC 61.785 60.000 23.60 0.00 37.47 5.54
5402 5675 0.236711 CTACGTACGTAGGCCATCCG 59.763 60.000 36.66 17.40 43.05 4.18
5443 5716 8.416329 TCGATCTCAATCTGATGAACATCTTTA 58.584 33.333 14.50 2.65 38.60 1.85
5444 5717 7.270779 TCGATCTCAATCTGATGAACATCTTT 58.729 34.615 14.50 4.94 38.60 2.52
5447 5720 5.118971 GCTCGATCTCAATCTGATGAACATC 59.881 44.000 7.73 7.73 38.29 3.06
5451 5724 3.640498 AGGCTCGATCTCAATCTGATGAA 59.360 43.478 0.00 0.00 0.00 2.57
5457 5730 2.875296 AGCTAGGCTCGATCTCAATCT 58.125 47.619 0.00 0.00 30.62 2.40
5458 5731 3.427503 GCTAGCTAGGCTCGATCTCAATC 60.428 52.174 22.10 0.00 40.44 2.67
5459 5732 2.491693 GCTAGCTAGGCTCGATCTCAAT 59.508 50.000 22.10 0.00 40.44 2.57
5460 5733 1.883275 GCTAGCTAGGCTCGATCTCAA 59.117 52.381 22.10 0.00 40.44 3.02
5461 5734 1.202818 TGCTAGCTAGGCTCGATCTCA 60.203 52.381 22.10 5.44 40.44 3.27
5462 5735 1.468520 CTGCTAGCTAGGCTCGATCTC 59.531 57.143 22.10 2.81 40.44 2.75
5468 5741 3.068873 ACATGTTACTGCTAGCTAGGCTC 59.931 47.826 22.10 6.41 40.44 4.70
5481 5754 4.105697 TGGAAGGAAAAGGGACATGTTACT 59.894 41.667 0.00 0.00 0.00 2.24
5496 5790 0.607489 GCTGCTGCTTCTGGAAGGAA 60.607 55.000 8.53 0.00 38.29 3.36
5497 5791 1.002868 GCTGCTGCTTCTGGAAGGA 60.003 57.895 8.53 8.19 38.80 3.36
5498 5792 3.588336 GCTGCTGCTTCTGGAAGG 58.412 61.111 8.53 0.00 38.80 3.46
5524 5820 3.685272 TGGATCGATCGTGCTATAGACTC 59.315 47.826 18.81 1.31 0.00 3.36
5586 5884 6.209391 TGCTAATTCGAGTCAGATCCATATGA 59.791 38.462 3.65 0.00 0.00 2.15
5605 5903 6.271159 GGGCCTATCCTATAGCTAATGCTAAT 59.729 42.308 0.84 0.00 43.81 1.73
5617 5920 7.604722 TCATCATCATTAGGGCCTATCCTATA 58.395 38.462 15.37 0.00 38.99 1.31
5618 5921 6.456125 TCATCATCATTAGGGCCTATCCTAT 58.544 40.000 15.37 1.37 38.99 2.57
5640 5943 0.532640 CCCGCCGACATTCATCATCA 60.533 55.000 0.00 0.00 0.00 3.07
5641 5944 0.249868 TCCCGCCGACATTCATCATC 60.250 55.000 0.00 0.00 0.00 2.92
5651 5954 3.735037 GATGAACCCTCCCGCCGAC 62.735 68.421 0.00 0.00 0.00 4.79
5652 5955 3.467226 GATGAACCCTCCCGCCGA 61.467 66.667 0.00 0.00 0.00 5.54
5653 5956 4.891727 CGATGAACCCTCCCGCCG 62.892 72.222 0.00 0.00 0.00 6.46
5654 5957 4.547367 CCGATGAACCCTCCCGCC 62.547 72.222 0.00 0.00 0.00 6.13
5655 5958 3.447025 CTCCGATGAACCCTCCCGC 62.447 68.421 0.00 0.00 0.00 6.13
5656 5959 2.017559 GACTCCGATGAACCCTCCCG 62.018 65.000 0.00 0.00 0.00 5.14
5657 5960 1.823976 GACTCCGATGAACCCTCCC 59.176 63.158 0.00 0.00 0.00 4.30
5658 5961 1.437986 CGACTCCGATGAACCCTCC 59.562 63.158 0.00 0.00 38.22 4.30
5659 5962 1.035932 TCCGACTCCGATGAACCCTC 61.036 60.000 0.00 0.00 38.22 4.30
5660 5963 1.000019 TCCGACTCCGATGAACCCT 60.000 57.895 0.00 0.00 38.22 4.34
5661 5964 1.141234 GTCCGACTCCGATGAACCC 59.859 63.158 0.00 0.00 38.22 4.11
5662 5965 0.460311 ATGTCCGACTCCGATGAACC 59.540 55.000 0.00 0.00 38.22 3.62
5663 5966 1.135083 ACATGTCCGACTCCGATGAAC 60.135 52.381 0.00 0.00 38.22 3.18
5664 5967 1.182667 ACATGTCCGACTCCGATGAA 58.817 50.000 0.00 0.00 38.22 2.57
5665 5968 2.047002 TACATGTCCGACTCCGATGA 57.953 50.000 0.00 0.00 38.22 2.92
5666 5969 4.703645 ATATACATGTCCGACTCCGATG 57.296 45.455 0.00 0.00 38.22 3.84
5667 5970 5.498393 AGTATATACATGTCCGACTCCGAT 58.502 41.667 15.18 0.00 38.22 4.18
5668 5971 4.903054 AGTATATACATGTCCGACTCCGA 58.097 43.478 15.18 0.00 38.22 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.