Multiple sequence alignment - TraesCS6B01G118900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G118900 chr6B 100.000 9123 0 0 781 9903 113649483 113658605 0.000000e+00 16848.0
1 TraesCS6B01G118900 chr6B 95.380 1645 47 4 1713 3348 221406338 221404714 0.000000e+00 2590.0
2 TraesCS6B01G118900 chr6B 89.012 1802 168 18 7549 9330 113771078 113772869 0.000000e+00 2204.0
3 TraesCS6B01G118900 chr6B 100.000 431 0 0 1 431 113648703 113649133 0.000000e+00 797.0
4 TraesCS6B01G118900 chr6B 90.305 361 30 3 801 1157 113770085 113770444 1.510000e-127 468.0
5 TraesCS6B01G118900 chr6B 85.757 337 36 8 7222 7552 113770626 113770956 7.360000e-91 346.0
6 TraesCS6B01G118900 chr6B 85.393 178 17 8 8998 9172 114027579 114027750 1.020000e-39 176.0
7 TraesCS6B01G118900 chr6B 84.530 181 18 7 3741 3917 113770464 113770638 4.760000e-38 171.0
8 TraesCS6B01G118900 chr6B 95.876 97 4 0 9409 9505 12006610 12006706 3.700000e-34 158.0
9 TraesCS6B01G118900 chr6B 95.122 82 4 0 9333 9414 120355505 120355424 8.070000e-26 130.0
10 TraesCS6B01G118900 chr2D 97.700 3304 73 2 3918 7220 106329395 106332696 0.000000e+00 5677.0
11 TraesCS6B01G118900 chr2D 97.367 3304 80 5 3918 7220 463076519 463079816 0.000000e+00 5613.0
12 TraesCS6B01G118900 chr2D 93.023 43 3 0 1589 1631 497903786 497903744 8.300000e-06 63.9
13 TraesCS6B01G118900 chr2A 97.522 3309 79 2 3913 7220 101858166 101854860 0.000000e+00 5653.0
14 TraesCS6B01G118900 chr2A 95.455 44 2 0 1591 1634 49851001 49850958 4.960000e-08 71.3
15 TraesCS6B01G118900 chr2A 92.683 41 3 0 9863 9903 708311999 708312039 1.070000e-04 60.2
16 TraesCS6B01G118900 chr3A 97.494 3312 78 3 3918 7226 217720639 217717330 0.000000e+00 5651.0
17 TraesCS6B01G118900 chr3A 97.277 3305 86 3 3918 7220 633849890 633853192 0.000000e+00 5602.0
18 TraesCS6B01G118900 chr3A 97.216 3305 89 2 3917 7220 77484357 77487659 0.000000e+00 5590.0
19 TraesCS6B01G118900 chr7A 97.336 3303 80 5 3922 7220 109348657 109351955 0.000000e+00 5605.0
20 TraesCS6B01G118900 chr7A 97.333 3300 80 5 3922 7220 438511591 438514883 0.000000e+00 5600.0
21 TraesCS6B01G118900 chr7A 95.098 102 4 1 9404 9505 97199617 97199717 1.030000e-34 159.0
22 TraesCS6B01G118900 chr7A 95.181 83 4 0 9332 9414 513215695 513215613 2.240000e-26 132.0
23 TraesCS6B01G118900 chr7A 96.875 32 1 0 290 321 157415764 157415795 5.000000e-03 54.7
24 TraesCS6B01G118900 chr7A 96.875 32 1 0 290 321 505693689 505693658 5.000000e-03 54.7
25 TraesCS6B01G118900 chr4D 97.220 3309 81 6 3917 7220 83143559 83146861 0.000000e+00 5590.0
26 TraesCS6B01G118900 chr4D 94.737 38 2 0 1597 1634 93455295 93455332 1.070000e-04 60.2
27 TraesCS6B01G118900 chr4D 87.500 56 0 7 1583 1634 502400093 502400145 3.860000e-04 58.4
28 TraesCS6B01G118900 chr4D 94.444 36 2 0 1597 1632 93455979 93455944 1.000000e-03 56.5
29 TraesCS6B01G118900 chr6A 96.467 2123 66 4 7220 9337 59344561 59346679 0.000000e+00 3496.0
30 TraesCS6B01G118900 chr6A 88.557 2141 206 23 7222 9337 59676168 59678294 0.000000e+00 2560.0
31 TraesCS6B01G118900 chr6A 95.508 935 37 3 783 1714 59342789 59343721 0.000000e+00 1489.0
32 TraesCS6B01G118900 chr6A 94.424 556 17 5 3362 3917 59344034 59344575 0.000000e+00 843.0
33 TraesCS6B01G118900 chr6A 91.081 370 31 1 788 1157 59675591 59675958 5.340000e-137 499.0
34 TraesCS6B01G118900 chr6A 94.118 187 11 0 1 187 59341611 59341797 1.630000e-72 285.0
35 TraesCS6B01G118900 chr6A 86.486 185 15 8 3741 3917 59675998 59676180 2.820000e-45 195.0
36 TraesCS6B01G118900 chr6A 92.188 128 8 2 186 312 59341901 59342027 7.900000e-41 180.0
37 TraesCS6B01G118900 chr6A 95.050 101 4 1 9404 9504 617550533 617550632 3.700000e-34 158.0
38 TraesCS6B01G118900 chr6A 90.909 99 6 2 9313 9411 69081865 69081960 8.070000e-26 130.0
39 TraesCS6B01G118900 chr6A 83.333 138 14 7 9085 9222 59710642 59710770 1.750000e-22 119.0
40 TraesCS6B01G118900 chr6A 95.455 44 2 0 1591 1634 410908845 410908802 4.960000e-08 71.3
41 TraesCS6B01G118900 chr6A 84.375 64 4 5 9085 9148 59787570 59787627 3.860000e-04 58.4
42 TraesCS6B01G118900 chr6A 96.970 33 1 0 290 322 577758331 577758299 1.000000e-03 56.5
43 TraesCS6B01G118900 chr6A 96.875 32 1 0 290 321 467712684 467712653 5.000000e-03 54.7
44 TraesCS6B01G118900 chr6D 91.639 2129 154 12 7222 9337 44505953 44508070 0.000000e+00 2924.0
45 TraesCS6B01G118900 chr6D 91.498 2129 159 14 7222 9337 44736183 44738302 0.000000e+00 2909.0
46 TraesCS6B01G118900 chr6D 96.587 1641 50 2 7220 8855 80290426 80292065 0.000000e+00 2715.0
47 TraesCS6B01G118900 chr6D 89.040 2135 191 20 7222 9337 44863302 44865412 0.000000e+00 2606.0
48 TraesCS6B01G118900 chr6D 88.758 1788 176 16 7567 9337 44933978 44935757 0.000000e+00 2165.0
49 TraesCS6B01G118900 chr6D 85.051 1679 223 20 7235 8892 45203483 45205154 0.000000e+00 1685.0
50 TraesCS6B01G118900 chr6D 95.513 936 38 2 781 1714 80288946 80289879 0.000000e+00 1493.0
51 TraesCS6B01G118900 chr6D 96.895 612 19 0 781 1392 44502848 44503459 0.000000e+00 1026.0
52 TraesCS6B01G118900 chr6D 95.088 570 23 3 3349 3917 80289875 80290440 0.000000e+00 893.0
53 TraesCS6B01G118900 chr6D 87.302 756 78 12 7222 7964 80297217 80297967 0.000000e+00 848.0
54 TraesCS6B01G118900 chr6D 89.048 420 36 6 1 417 44502031 44502443 6.860000e-141 512.0
55 TraesCS6B01G118900 chr6D 88.783 419 40 4 1 417 80288128 80288541 3.190000e-139 507.0
56 TraesCS6B01G118900 chr6D 91.375 371 28 3 788 1157 44862740 44863107 1.150000e-138 505.0
57 TraesCS6B01G118900 chr6D 90.811 370 30 2 788 1157 80296657 80297022 8.940000e-135 492.0
58 TraesCS6B01G118900 chr6D 90.270 370 33 2 788 1157 44735621 44735987 1.930000e-131 481.0
59 TraesCS6B01G118900 chr6D 88.378 370 27 11 788 1157 44505405 44505758 1.980000e-116 431.0
60 TraesCS6B01G118900 chr6D 83.002 453 49 21 790 1231 44932816 44933251 1.560000e-102 385.0
61 TraesCS6B01G118900 chr6D 86.826 334 33 6 7225 7552 44933483 44933811 7.310000e-96 363.0
62 TraesCS6B01G118900 chr6D 87.783 221 14 6 9503 9723 44508068 44508275 7.680000e-61 246.0
63 TraesCS6B01G118900 chr6D 87.330 221 15 6 9503 9723 44738300 44738507 3.570000e-59 241.0
64 TraesCS6B01G118900 chr6D 89.441 161 13 4 9537 9696 44865426 44865583 6.070000e-47 200.0
65 TraesCS6B01G118900 chr6D 95.161 124 6 0 1388 1511 44504258 44504381 7.850000e-46 196.0
66 TraesCS6B01G118900 chr6D 88.166 169 14 4 3718 3881 44933320 44933487 7.850000e-46 196.0
67 TraesCS6B01G118900 chr6D 88.000 75 8 1 3349 3422 45478912 45478986 4.930000e-13 87.9
68 TraesCS6B01G118900 chr6D 90.625 64 1 4 9085 9148 45210736 45210794 8.250000e-11 80.5
69 TraesCS6B01G118900 chr6D 97.727 44 1 0 1591 1634 304279406 304279449 1.070000e-09 76.8
70 TraesCS6B01G118900 chr6D 93.333 45 3 0 1590 1634 292073365 292073409 6.420000e-07 67.6
71 TraesCS6B01G118900 chr6D 94.737 38 2 0 1597 1634 292073457 292073420 1.070000e-04 60.2
72 TraesCS6B01G118900 chr6D 97.143 35 1 0 1597 1631 467043064 467043098 1.070000e-04 60.2
73 TraesCS6B01G118900 chr1B 95.244 1640 68 4 1718 3348 316259409 316257771 0.000000e+00 2588.0
74 TraesCS6B01G118900 chr1B 94.039 1644 89 3 1715 3349 421432715 421431072 0.000000e+00 2484.0
75 TraesCS6B01G118900 chr1B 90.556 1673 76 23 1713 3347 424542112 424543740 0.000000e+00 2139.0
76 TraesCS6B01G118900 chr1B 94.083 338 12 2 1715 2044 141116921 141117258 3.190000e-139 507.0
77 TraesCS6B01G118900 chr1B 92.442 344 15 6 1715 2056 326771517 326771851 1.930000e-131 481.0
78 TraesCS6B01G118900 chr1B 97.297 37 1 0 1598 1634 329485223 329485259 8.300000e-06 63.9
79 TraesCS6B01G118900 chr2B 94.830 1644 55 8 1715 3349 214826355 214824733 0.000000e+00 2538.0
80 TraesCS6B01G118900 chr2B 94.360 1649 78 6 1715 3348 195063284 195064932 0.000000e+00 2516.0
81 TraesCS6B01G118900 chr2B 92.624 1654 85 9 1715 3349 463929070 463927435 0.000000e+00 2344.0
82 TraesCS6B01G118900 chr2B 88.760 774 69 4 2103 2876 723137227 723136472 0.000000e+00 931.0
83 TraesCS6B01G118900 chr2B 96.296 81 2 1 9331 9411 790226999 790227078 2.240000e-26 132.0
84 TraesCS6B01G118900 chr2B 92.308 91 7 0 9324 9414 99273102 99273012 8.070000e-26 130.0
85 TraesCS6B01G118900 chr2B 97.561 41 1 0 1594 1634 572592430 572592390 4.960000e-08 71.3
86 TraesCS6B01G118900 chr2B 97.368 38 1 0 1597 1634 607550997 607550960 2.310000e-06 65.8
87 TraesCS6B01G118900 chr2B 89.796 49 4 1 1587 1634 764537601 764537649 2.990000e-05 62.1
88 TraesCS6B01G118900 chr4B 94.289 1611 74 4 1736 3337 274683797 274682196 0.000000e+00 2449.0
89 TraesCS6B01G118900 chr4B 92.431 1678 61 27 1715 3349 408982386 408980732 0.000000e+00 2335.0
90 TraesCS6B01G118900 chr4B 90.564 1685 105 25 1715 3348 103796634 103798315 0.000000e+00 2182.0
91 TraesCS6B01G118900 chr4B 93.584 1356 78 4 1994 3348 16843634 16842287 0.000000e+00 2013.0
92 TraesCS6B01G118900 chr4B 91.039 1194 61 19 1715 2876 182238964 182237785 0.000000e+00 1570.0
93 TraesCS6B01G118900 chr4B 94.062 640 30 2 1714 2345 423039883 423040522 0.000000e+00 965.0
94 TraesCS6B01G118900 chr4B 92.994 314 14 2 1715 2020 73278020 73278333 1.520000e-122 451.0
95 TraesCS6B01G118900 chr4B 95.833 264 10 1 1715 1977 16858743 16858480 9.190000e-115 425.0
96 TraesCS6B01G118900 chr4B 95.098 102 4 1 9404 9505 40784372 40784472 1.030000e-34 159.0
97 TraesCS6B01G118900 chr4B 95.098 102 4 1 9404 9505 482619931 482619831 1.030000e-34 159.0
98 TraesCS6B01G118900 chr4B 97.297 37 1 0 9867 9903 561152992 561152956 8.300000e-06 63.9
99 TraesCS6B01G118900 chr5B 92.417 1688 74 20 1715 3348 291075370 291077057 0.000000e+00 2359.0
100 TraesCS6B01G118900 chr5B 93.257 697 39 2 1714 2402 94094074 94094770 0.000000e+00 1020.0
101 TraesCS6B01G118900 chr5B 92.481 665 31 5 1715 2370 216656467 216657121 0.000000e+00 933.0
102 TraesCS6B01G118900 chr5B 92.038 314 17 4 1714 2020 427889231 427888919 1.530000e-117 435.0
103 TraesCS6B01G118900 chr5B 95.238 42 1 1 1594 1634 215889679 215889720 2.310000e-06 65.8
104 TraesCS6B01G118900 chr3B 96.219 1296 47 2 2054 3348 367841377 367840083 0.000000e+00 2121.0
105 TraesCS6B01G118900 chr3B 85.141 996 96 20 1717 2671 48209472 48210456 0.000000e+00 972.0
106 TraesCS6B01G118900 chr3B 85.319 722 60 17 1707 2414 127856836 127857525 0.000000e+00 704.0
107 TraesCS6B01G118900 chr3B 89.796 490 42 2 1717 2198 47950500 47950989 1.090000e-173 621.0
108 TraesCS6B01G118900 chr3B 94.286 105 6 0 9409 9513 709232543 709232647 2.860000e-35 161.0
109 TraesCS6B01G118900 chr3B 94.231 104 5 1 9404 9507 156862331 156862433 3.700000e-34 158.0
110 TraesCS6B01G118900 chr3B 96.341 82 3 0 9333 9414 807957983 807957902 1.730000e-27 135.0
111 TraesCS6B01G118900 chr3B 91.111 45 4 0 9859 9903 776993528 776993572 2.990000e-05 62.1
112 TraesCS6B01G118900 chr5A 86.969 683 71 9 1743 2414 222521888 222521213 0.000000e+00 752.0
113 TraesCS6B01G118900 chr5A 95.050 101 4 1 9404 9504 385281364 385281265 3.700000e-34 158.0
114 TraesCS6B01G118900 chr5A 96.341 82 3 0 9330 9411 245653648 245653729 1.730000e-27 135.0
115 TraesCS6B01G118900 chr5A 96.875 32 1 0 290 321 98431172 98431141 5.000000e-03 54.7
116 TraesCS6B01G118900 chr5A 96.875 32 1 0 290 321 622121358 622121389 5.000000e-03 54.7
117 TraesCS6B01G118900 chrUn 90.054 372 17 6 1710 2072 428931752 428932112 1.950000e-126 464.0
118 TraesCS6B01G118900 chrUn 90.343 321 21 4 1711 2024 275831610 275831927 7.160000e-111 412.0
119 TraesCS6B01G118900 chrUn 90.506 316 22 5 1713 2020 75641489 75641174 2.570000e-110 411.0
120 TraesCS6B01G118900 chrUn 90.506 316 22 5 1713 2020 186668998 186669313 2.570000e-110 411.0
121 TraesCS6B01G118900 chrUn 94.697 264 13 1 1715 1977 469244980 469245243 9.260000e-110 409.0
122 TraesCS6B01G118900 chrUn 96.341 246 9 0 1714 1959 275833321 275833566 1.200000e-108 405.0
123 TraesCS6B01G118900 chrUn 90.190 316 22 6 1713 2020 75637658 75637344 4.310000e-108 403.0
124 TraesCS6B01G118900 chrUn 95.582 249 10 1 1714 1961 79627605 79627853 2.000000e-106 398.0
125 TraesCS6B01G118900 chrUn 94.872 39 2 0 1597 1635 112241379 112241417 2.990000e-05 62.1
126 TraesCS6B01G118900 chr3D 93.016 315 14 2 1714 2020 268945177 268944863 4.220000e-123 453.0
127 TraesCS6B01G118900 chr3D 91.536 319 18 3 1711 2020 135250432 135250750 1.980000e-116 431.0
128 TraesCS6B01G118900 chr3D 95.000 40 2 0 1595 1634 603169574 603169535 8.300000e-06 63.9
129 TraesCS6B01G118900 chr3D 97.222 36 1 0 1599 1634 486041931 486041966 2.990000e-05 62.1
130 TraesCS6B01G118900 chr1D 92.038 314 17 2 1715 2020 375937156 375936843 1.530000e-117 435.0
131 TraesCS6B01G118900 chr1D 97.500 40 1 0 9864 9903 56876129 56876090 1.780000e-07 69.4
132 TraesCS6B01G118900 chr1D 95.000 40 2 0 9859 9898 341272452 341272413 8.300000e-06 63.9
133 TraesCS6B01G118900 chr1D 97.143 35 1 0 1597 1631 249025240 249025274 1.070000e-04 60.2
134 TraesCS6B01G118900 chr4A 92.727 110 7 1 9409 9517 548344169 548344060 3.700000e-34 158.0
135 TraesCS6B01G118900 chr5D 96.296 81 3 0 9334 9414 367435656 367435576 6.240000e-27 134.0
136 TraesCS6B01G118900 chr5D 97.368 38 1 0 1597 1634 548952404 548952367 2.310000e-06 65.8
137 TraesCS6B01G118900 chr5D 94.872 39 2 0 9864 9902 116723903 116723941 2.990000e-05 62.1
138 TraesCS6B01G118900 chr7D 94.186 86 4 1 9327 9411 123332092 123332177 8.070000e-26 130.0
139 TraesCS6B01G118900 chr1A 97.222 36 1 0 1597 1632 386788335 386788300 2.990000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G118900 chr6B 113648703 113658605 9902 False 8822.500000 16848 100.000000 1 9903 2 chr6B.!!$F3 9902
1 TraesCS6B01G118900 chr6B 221404714 221406338 1624 True 2590.000000 2590 95.380000 1713 3348 1 chr6B.!!$R2 1635
2 TraesCS6B01G118900 chr6B 113770085 113772869 2784 False 797.250000 2204 87.401000 801 9330 4 chr6B.!!$F4 8529
3 TraesCS6B01G118900 chr2D 106329395 106332696 3301 False 5677.000000 5677 97.700000 3918 7220 1 chr2D.!!$F1 3302
4 TraesCS6B01G118900 chr2D 463076519 463079816 3297 False 5613.000000 5613 97.367000 3918 7220 1 chr2D.!!$F2 3302
5 TraesCS6B01G118900 chr2A 101854860 101858166 3306 True 5653.000000 5653 97.522000 3913 7220 1 chr2A.!!$R2 3307
6 TraesCS6B01G118900 chr3A 217717330 217720639 3309 True 5651.000000 5651 97.494000 3918 7226 1 chr3A.!!$R1 3308
7 TraesCS6B01G118900 chr3A 633849890 633853192 3302 False 5602.000000 5602 97.277000 3918 7220 1 chr3A.!!$F2 3302
8 TraesCS6B01G118900 chr3A 77484357 77487659 3302 False 5590.000000 5590 97.216000 3917 7220 1 chr3A.!!$F1 3303
9 TraesCS6B01G118900 chr7A 109348657 109351955 3298 False 5605.000000 5605 97.336000 3922 7220 1 chr7A.!!$F2 3298
10 TraesCS6B01G118900 chr7A 438511591 438514883 3292 False 5600.000000 5600 97.333000 3922 7220 1 chr7A.!!$F4 3298
11 TraesCS6B01G118900 chr4D 83143559 83146861 3302 False 5590.000000 5590 97.220000 3917 7220 1 chr4D.!!$F1 3303
12 TraesCS6B01G118900 chr6A 59341611 59346679 5068 False 1258.600000 3496 94.541000 1 9337 5 chr6A.!!$F5 9336
13 TraesCS6B01G118900 chr6A 59675591 59678294 2703 False 1084.666667 2560 88.708000 788 9337 3 chr6A.!!$F6 8549
14 TraesCS6B01G118900 chr6D 45203483 45205154 1671 False 1685.000000 1685 85.051000 7235 8892 1 chr6D.!!$F1 1657
15 TraesCS6B01G118900 chr6D 80288128 80292065 3937 False 1402.000000 2715 93.992750 1 8855 4 chr6D.!!$F11 8854
16 TraesCS6B01G118900 chr6D 44735621 44738507 2886 False 1210.333333 2909 89.699333 788 9723 3 chr6D.!!$F8 8935
17 TraesCS6B01G118900 chr6D 44862740 44865583 2843 False 1103.666667 2606 89.952000 788 9696 3 chr6D.!!$F9 8908
18 TraesCS6B01G118900 chr6D 44502031 44508275 6244 False 889.166667 2924 91.484000 1 9723 6 chr6D.!!$F7 9722
19 TraesCS6B01G118900 chr6D 44932816 44935757 2941 False 777.250000 2165 86.688000 790 9337 4 chr6D.!!$F10 8547
20 TraesCS6B01G118900 chr6D 80296657 80297967 1310 False 670.000000 848 89.056500 788 7964 2 chr6D.!!$F12 7176
21 TraesCS6B01G118900 chr1B 316257771 316259409 1638 True 2588.000000 2588 95.244000 1718 3348 1 chr1B.!!$R1 1630
22 TraesCS6B01G118900 chr1B 421431072 421432715 1643 True 2484.000000 2484 94.039000 1715 3349 1 chr1B.!!$R2 1634
23 TraesCS6B01G118900 chr1B 424542112 424543740 1628 False 2139.000000 2139 90.556000 1713 3347 1 chr1B.!!$F4 1634
24 TraesCS6B01G118900 chr2B 214824733 214826355 1622 True 2538.000000 2538 94.830000 1715 3349 1 chr2B.!!$R2 1634
25 TraesCS6B01G118900 chr2B 195063284 195064932 1648 False 2516.000000 2516 94.360000 1715 3348 1 chr2B.!!$F1 1633
26 TraesCS6B01G118900 chr2B 463927435 463929070 1635 True 2344.000000 2344 92.624000 1715 3349 1 chr2B.!!$R3 1634
27 TraesCS6B01G118900 chr2B 723136472 723137227 755 True 931.000000 931 88.760000 2103 2876 1 chr2B.!!$R6 773
28 TraesCS6B01G118900 chr4B 274682196 274683797 1601 True 2449.000000 2449 94.289000 1736 3337 1 chr4B.!!$R4 1601
29 TraesCS6B01G118900 chr4B 408980732 408982386 1654 True 2335.000000 2335 92.431000 1715 3349 1 chr4B.!!$R5 1634
30 TraesCS6B01G118900 chr4B 103796634 103798315 1681 False 2182.000000 2182 90.564000 1715 3348 1 chr4B.!!$F3 1633
31 TraesCS6B01G118900 chr4B 16842287 16843634 1347 True 2013.000000 2013 93.584000 1994 3348 1 chr4B.!!$R1 1354
32 TraesCS6B01G118900 chr4B 182237785 182238964 1179 True 1570.000000 1570 91.039000 1715 2876 1 chr4B.!!$R3 1161
33 TraesCS6B01G118900 chr4B 423039883 423040522 639 False 965.000000 965 94.062000 1714 2345 1 chr4B.!!$F4 631
34 TraesCS6B01G118900 chr5B 291075370 291077057 1687 False 2359.000000 2359 92.417000 1715 3348 1 chr5B.!!$F4 1633
35 TraesCS6B01G118900 chr5B 94094074 94094770 696 False 1020.000000 1020 93.257000 1714 2402 1 chr5B.!!$F1 688
36 TraesCS6B01G118900 chr5B 216656467 216657121 654 False 933.000000 933 92.481000 1715 2370 1 chr5B.!!$F3 655
37 TraesCS6B01G118900 chr3B 367840083 367841377 1294 True 2121.000000 2121 96.219000 2054 3348 1 chr3B.!!$R1 1294
38 TraesCS6B01G118900 chr3B 48209472 48210456 984 False 972.000000 972 85.141000 1717 2671 1 chr3B.!!$F2 954
39 TraesCS6B01G118900 chr3B 127856836 127857525 689 False 704.000000 704 85.319000 1707 2414 1 chr3B.!!$F3 707
40 TraesCS6B01G118900 chr5A 222521213 222521888 675 True 752.000000 752 86.969000 1743 2414 1 chr5A.!!$R2 671
41 TraesCS6B01G118900 chrUn 275831610 275833566 1956 False 408.500000 412 93.342000 1711 2024 2 chrUn.!!$F6 313
42 TraesCS6B01G118900 chrUn 75637344 75641489 4145 True 407.000000 411 90.348000 1713 2020 2 chrUn.!!$R1 307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 484 0.034574 AAGTTGGCACCTCACACACA 60.035 50.000 0.00 0.0 0.00 3.72 F
1127 4189 2.395353 CCCCCTCCCCCAAATCTCC 61.395 68.421 0.00 0.0 0.00 3.71 F
2483 5891 2.125552 CTCGTTCCCATCAGCGCA 60.126 61.111 11.47 0.0 0.00 6.09 F
2697 6115 0.741221 GCGCAAAGGACCTCGATCTT 60.741 55.000 0.30 0.0 0.00 2.40 F
3352 9069 0.742281 AGCAGCGCCATAACAGACTG 60.742 55.000 2.29 0.0 0.00 3.51 F
5022 10770 0.106519 AGCTGGTGGTTGCTGACTTT 60.107 50.000 0.00 0.0 38.21 2.66 F
5444 11193 0.037605 AACGGTTAGGCACGAAGGAG 60.038 55.000 0.00 0.0 0.00 3.69 F
6023 11773 0.038166 GTTTCATGCCTGGGAGGTCA 59.962 55.000 0.00 0.0 37.80 4.02 F
7129 12887 0.466922 AGCTTGCTATCCATGTGCCC 60.467 55.000 0.00 0.0 0.00 5.36 F
8058 14123 1.076024 AGGCCAGCCAGAGAAAATTCA 59.924 47.619 12.03 0.0 38.92 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 4437 0.178903 TCAGTTGACCCTGCCCTACT 60.179 55.000 0.00 0.00 32.32 2.57 R
2540 5948 0.610174 AGCGATCCAAGACAGAAGCA 59.390 50.000 0.00 0.00 0.00 3.91 R
4229 9977 1.131315 GCGAAGACCCTTGCTCATTTC 59.869 52.381 0.00 0.00 0.00 2.17 R
4357 10105 1.220206 CTCTCCTCACCGCTGCATT 59.780 57.895 0.00 0.00 0.00 3.56 R
5032 10780 0.108520 TTATCCCGCTGGACACGAAC 60.109 55.000 0.00 0.00 45.58 3.95 R
6398 12148 0.258484 TTACCCCCGTCCGACTATCA 59.742 55.000 0.00 0.00 0.00 2.15 R
6634 12392 1.027357 CTTCATCCATCCGGCTTTGG 58.973 55.000 10.66 10.66 0.00 3.28 R
7933 13998 1.427368 AGACCTTTGTATGCCAACCCA 59.573 47.619 0.00 0.00 31.20 4.51 R
8605 14670 1.079819 CTCGTCGCAATGACCCTGT 60.080 57.895 0.00 0.00 45.23 4.00 R
9801 15892 0.038618 TCGACACCCTCAACATCACG 60.039 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.042638 TGGATTATTGGATAGCTAGAGTGC 57.957 41.667 0.00 0.00 0.00 4.40
53 54 5.336849 GGATTATTGGATAGCTAGAGTGCGT 60.337 44.000 0.00 0.00 38.13 5.24
134 135 7.886970 TCCAAGATCAAGATTTGAGAATTCAGT 59.113 33.333 8.44 0.00 43.98 3.41
288 397 4.164981 TCTGTTACGAGGGCCCATTATAT 58.835 43.478 27.56 0.00 0.00 0.86
322 431 1.835693 GCCTCTAAGATGCCAGGCT 59.164 57.895 14.15 0.00 46.88 4.58
323 432 1.051812 GCCTCTAAGATGCCAGGCTA 58.948 55.000 14.15 0.00 46.88 3.93
328 437 2.968574 TCTAAGATGCCAGGCTAGGAAG 59.031 50.000 14.15 5.21 0.00 3.46
374 483 1.065551 GAAAGTTGGCACCTCACACAC 59.934 52.381 0.00 0.00 0.00 3.82
375 484 0.034574 AAGTTGGCACCTCACACACA 60.035 50.000 0.00 0.00 0.00 3.72
390 499 3.057315 CACACACAGATTCCATTGAACCC 60.057 47.826 0.00 0.00 32.13 4.11
401 510 3.254657 TCCATTGAACCCGATGTTGTTTC 59.745 43.478 0.00 0.00 37.29 2.78
403 512 4.475944 CATTGAACCCGATGTTGTTTCTC 58.524 43.478 0.00 0.00 37.29 2.87
420 563 6.970484 TGTTTCTCCTGTAATTTCTTGAAGC 58.030 36.000 0.00 0.00 0.00 3.86
1127 4189 2.395353 CCCCCTCCCCCAAATCTCC 61.395 68.421 0.00 0.00 0.00 3.71
1354 4429 6.208599 ACTTGAAGTTCCTTTTCAACTGAACA 59.791 34.615 0.00 0.00 39.05 3.18
1362 4437 5.943416 TCCTTTTCAACTGAACAACTGAAGA 59.057 36.000 0.00 0.00 33.13 2.87
1440 4515 6.818644 GTCTGATGCTAAGTGAAAATAGGTGA 59.181 38.462 0.00 0.00 0.00 4.02
1513 4590 8.299570 CCTGTTCTGTTTTGCTGTATCTTTATT 58.700 33.333 0.00 0.00 0.00 1.40
1528 4605 3.126858 TCTTTATTGAAGATGGTGCGCAC 59.873 43.478 32.15 32.15 39.44 5.34
1571 4650 8.765488 TTTTTGGAATATATGAAGAGATGCCA 57.235 30.769 0.00 0.00 0.00 4.92
1612 4691 8.666129 TCTAAATATTACTCCTTCCGATCCAT 57.334 34.615 0.00 0.00 0.00 3.41
1622 4701 6.097915 TCCTTCCGATCCATAATAAGTGTC 57.902 41.667 0.00 0.00 0.00 3.67
1626 4705 3.987868 CCGATCCATAATAAGTGTCGTGG 59.012 47.826 0.00 0.00 0.00 4.94
1668 4747 8.087982 TCACATGTTTTCACTTCTCACTATTC 57.912 34.615 0.00 0.00 0.00 1.75
2483 5891 2.125552 CTCGTTCCCATCAGCGCA 60.126 61.111 11.47 0.00 0.00 6.09
2697 6115 0.741221 GCGCAAAGGACCTCGATCTT 60.741 55.000 0.30 0.00 0.00 2.40
2768 6186 1.074775 ATGCTGTTTTCCCTGCGGA 59.925 52.632 0.00 0.00 35.88 5.54
3349 9066 1.111277 TCTAGCAGCGCCATAACAGA 58.889 50.000 2.29 0.00 0.00 3.41
3350 9067 1.202417 TCTAGCAGCGCCATAACAGAC 60.202 52.381 2.29 0.00 0.00 3.51
3351 9068 0.824109 TAGCAGCGCCATAACAGACT 59.176 50.000 2.29 0.00 0.00 3.24
3352 9069 0.742281 AGCAGCGCCATAACAGACTG 60.742 55.000 2.29 0.00 0.00 3.51
3353 9070 1.717937 CAGCGCCATAACAGACTGC 59.282 57.895 2.29 0.00 0.00 4.40
3355 9072 2.100631 GCGCCATAACAGACTGCGT 61.101 57.895 1.25 0.00 46.39 5.24
3356 9073 0.804544 GCGCCATAACAGACTGCGTA 60.805 55.000 1.25 0.00 46.39 4.42
3357 9074 1.852942 CGCCATAACAGACTGCGTAT 58.147 50.000 1.25 0.00 40.33 3.06
3358 9075 2.860971 GCGCCATAACAGACTGCGTATA 60.861 50.000 1.25 0.00 46.39 1.47
3359 9076 3.377439 CGCCATAACAGACTGCGTATAA 58.623 45.455 1.25 0.00 40.33 0.98
3360 9077 3.425525 CGCCATAACAGACTGCGTATAAG 59.574 47.826 1.25 0.00 40.33 1.73
3376 9093 5.237344 GCGTATAAGATGTTTTGAGCCTCAT 59.763 40.000 0.00 0.00 0.00 2.90
3381 9098 5.426689 AGATGTTTTGAGCCTCATACTCA 57.573 39.130 0.00 0.00 42.30 3.41
3586 9311 7.386059 AGTTGAATTATGAAAACCCCATGTTC 58.614 34.615 0.00 0.00 35.67 3.18
3596 9321 6.778069 TGAAAACCCCATGTTCTGTTATGTTA 59.222 34.615 0.00 0.00 35.67 2.41
3597 9322 7.453126 TGAAAACCCCATGTTCTGTTATGTTAT 59.547 33.333 0.00 0.00 35.67 1.89
3598 9323 7.404671 AAACCCCATGTTCTGTTATGTTATC 57.595 36.000 0.00 0.00 35.67 1.75
3599 9324 6.327386 ACCCCATGTTCTGTTATGTTATCT 57.673 37.500 0.00 0.00 0.00 1.98
3600 9325 6.731467 ACCCCATGTTCTGTTATGTTATCTT 58.269 36.000 0.00 0.00 0.00 2.40
3601 9326 7.867921 ACCCCATGTTCTGTTATGTTATCTTA 58.132 34.615 0.00 0.00 0.00 2.10
3602 9327 8.502738 ACCCCATGTTCTGTTATGTTATCTTAT 58.497 33.333 0.00 0.00 0.00 1.73
3603 9328 8.786898 CCCCATGTTCTGTTATGTTATCTTATG 58.213 37.037 0.00 0.00 0.00 1.90
3604 9329 9.342308 CCCATGTTCTGTTATGTTATCTTATGT 57.658 33.333 0.00 0.00 0.00 2.29
3627 9352 7.883217 TGTTTACTTGTGGAAAACAACACTAA 58.117 30.769 0.00 0.00 44.97 2.24
4156 9904 1.732732 CGCCGTATCTTGATCCGGATC 60.733 57.143 33.41 33.41 43.01 3.36
4210 9958 0.810031 CCTTAGTGGCGCGCTACATT 60.810 55.000 41.90 28.23 0.00 2.71
4229 9977 4.910585 GCGCCCGGATGTAGTGGG 62.911 72.222 0.73 0.00 46.22 4.61
4286 10034 1.202545 GCGAAGGGTAAGGAAGCTAGG 60.203 57.143 0.00 0.00 0.00 3.02
4525 10273 3.618690 ACAAGAGCCTCAAGTATGGAC 57.381 47.619 0.00 0.00 0.00 4.02
4616 10364 0.600255 GTTATCAGCGCGTATGCCCT 60.600 55.000 8.43 0.00 38.08 5.19
4687 10435 5.030147 TGGAAGACATGGTTAGGAGTGTAT 58.970 41.667 0.00 0.00 0.00 2.29
4732 10480 0.842030 AGGAGACCTCAATGGCCACA 60.842 55.000 8.16 0.00 40.22 4.17
4900 10648 2.993899 CTGGTGACTTTTAGTAGTGGCG 59.006 50.000 0.00 0.00 0.00 5.69
5022 10770 0.106519 AGCTGGTGGTTGCTGACTTT 60.107 50.000 0.00 0.00 38.21 2.66
5032 10780 1.227999 TGCTGACTTTCGCTTTCGGG 61.228 55.000 0.00 0.00 36.13 5.14
5094 10842 0.768221 AGTGGTGGAAGCTCAAGGGA 60.768 55.000 0.00 0.00 33.76 4.20
5095 10843 0.110486 GTGGTGGAAGCTCAAGGGAA 59.890 55.000 0.00 0.00 33.76 3.97
5169 10917 0.815615 GAGGGGATGCGGACAATGTC 60.816 60.000 4.51 4.51 0.00 3.06
5444 11193 0.037605 AACGGTTAGGCACGAAGGAG 60.038 55.000 0.00 0.00 0.00 3.69
5447 11196 1.449778 GTTAGGCACGAAGGAGGGC 60.450 63.158 0.00 0.00 0.00 5.19
5495 11244 0.745128 TCCGAGAGAGGAAGACGAGC 60.745 60.000 0.00 0.00 37.36 5.03
5535 11284 1.992277 ATCAAGGACGGAGCAGGCT 60.992 57.895 0.00 0.00 0.00 4.58
5708 11457 5.061721 AGGTCAAGGAGGCTTTAAAAAGA 57.938 39.130 6.64 0.00 38.28 2.52
5724 11473 7.595819 TTAAAAAGAATGAAAGGAGGCAAGA 57.404 32.000 0.00 0.00 0.00 3.02
5726 11475 3.795688 AGAATGAAAGGAGGCAAGACA 57.204 42.857 0.00 0.00 0.00 3.41
5871 11620 8.120140 ACGGAGTATATTAGTACCAATCTTCC 57.880 38.462 0.00 0.00 41.94 3.46
5997 11747 3.791973 TGACAAGCGTGACCAAAAATT 57.208 38.095 6.65 0.00 0.00 1.82
6023 11773 0.038166 GTTTCATGCCTGGGAGGTCA 59.962 55.000 0.00 0.00 37.80 4.02
6040 11790 2.354003 GGTCAACCATGGAAGCCATTTG 60.354 50.000 21.47 10.73 42.23 2.32
6188 11938 3.821033 ACAAAGTCCCAGCAAAGTACATC 59.179 43.478 0.00 0.00 0.00 3.06
6190 11940 4.307032 AAGTCCCAGCAAAGTACATCAT 57.693 40.909 0.00 0.00 0.00 2.45
6246 11996 3.792401 AGTGTTCGAACAAGTGATGTCA 58.208 40.909 31.20 3.01 42.99 3.58
6398 12148 3.742327 CGGATGATGTGGTGCTAGTTGAT 60.742 47.826 0.00 0.00 0.00 2.57
6486 12238 9.223099 GGTTTATGCTTAGTAGAACTAAAACCA 57.777 33.333 17.49 9.46 41.56 3.67
6507 12259 1.999735 AGTACATGATGTGCGGTTTCG 59.000 47.619 8.61 0.00 38.05 3.46
6796 12554 2.159627 GGCGACATGTTCAACAGTTAGG 59.840 50.000 0.00 0.00 0.00 2.69
6797 12555 2.806244 GCGACATGTTCAACAGTTAGGT 59.194 45.455 0.00 0.00 0.00 3.08
6850 12608 2.047179 GGCCACACGAGGAAGGAC 60.047 66.667 0.00 0.00 0.00 3.85
7059 12817 1.750206 GGAGTCCGTTAAGAGAGACCC 59.250 57.143 0.00 0.00 0.00 4.46
7129 12887 0.466922 AGCTTGCTATCCATGTGCCC 60.467 55.000 0.00 0.00 0.00 5.36
7215 12973 4.180817 ACTAAAGGCTTTGTTGTTGTTGC 58.819 39.130 22.32 0.00 0.00 4.17
7226 12984 5.224562 TGTTGTTGTTGCTGTTACTGTAC 57.775 39.130 0.00 0.00 0.00 2.90
7356 13126 7.218228 TCAAACGTATACAGTCTGAGGTTTA 57.782 36.000 6.91 0.00 0.00 2.01
7424 13194 7.225734 GGTCTTAAGCTGAGTTAATCTCCAATC 59.774 40.741 0.00 0.00 42.12 2.67
7523 13296 3.633986 GTGAATAGGCAAAATCCTGGAGG 59.366 47.826 1.52 0.00 37.01 4.30
7539 13312 7.937700 TCCTGGAGGAAATAATGTTCTAGAT 57.062 36.000 0.00 0.00 42.18 1.98
7622 13684 5.523588 TCAGATGGTGATAAGTCTCTCCTT 58.476 41.667 0.00 0.00 31.49 3.36
7718 13783 6.602179 TGAGCAAAGTATCTTTTCATGTTCG 58.398 36.000 0.00 0.00 0.00 3.95
7910 13975 7.355778 CAAGTCTGTGAAAACTTATTCCTGTC 58.644 38.462 0.00 0.00 34.05 3.51
7933 13998 6.316390 GTCTGCTTAACTGCTATGGTAAACAT 59.684 38.462 0.00 0.00 43.68 2.71
8029 14094 9.677567 GTGTACAACAACTTGATGATTTTGTAT 57.322 29.630 0.00 0.00 32.31 2.29
8058 14123 1.076024 AGGCCAGCCAGAGAAAATTCA 59.924 47.619 12.03 0.00 38.92 2.57
8059 14124 1.895131 GGCCAGCCAGAGAAAATTCAA 59.105 47.619 3.12 0.00 35.81 2.69
8605 14670 1.672030 CCGTCAGAGCACAATGGCA 60.672 57.895 0.00 0.00 35.83 4.92
8625 14690 1.982395 AGGGTCATTGCGACGAGGA 60.982 57.895 0.00 0.00 46.42 3.71
8905 14970 3.651803 AGAACCAGAGACGACTGAAAG 57.348 47.619 0.00 0.00 39.94 2.62
9015 15088 6.508721 GCTGTTCTATAACTTGTCGAAGATGC 60.509 42.308 0.00 0.00 36.05 3.91
9017 15090 5.244785 TCTATAACTTGTCGAAGATGCGT 57.755 39.130 0.00 0.00 40.67 5.24
9178 15260 2.499289 AGCTCCTCCTGACTATTGTGTG 59.501 50.000 0.00 0.00 0.00 3.82
9222 15307 7.599630 ATTTGATGCAGTTATTCGCAAAATT 57.400 28.000 0.00 0.00 42.37 1.82
9223 15308 8.700722 ATTTGATGCAGTTATTCGCAAAATTA 57.299 26.923 0.00 0.00 42.37 1.40
9339 15430 9.838975 GAACTAAGACTAACTGTTAACTACTCC 57.161 37.037 7.22 0.00 0.00 3.85
9340 15431 8.347004 ACTAAGACTAACTGTTAACTACTCCC 57.653 38.462 7.22 0.00 0.00 4.30
9341 15432 8.169393 ACTAAGACTAACTGTTAACTACTCCCT 58.831 37.037 7.22 0.00 0.00 4.20
9342 15433 7.465353 AAGACTAACTGTTAACTACTCCCTC 57.535 40.000 7.22 0.00 0.00 4.30
9343 15434 5.951148 AGACTAACTGTTAACTACTCCCTCC 59.049 44.000 7.22 0.00 0.00 4.30
9344 15435 4.704057 ACTAACTGTTAACTACTCCCTCCG 59.296 45.833 7.22 0.00 0.00 4.63
9345 15436 3.166560 ACTGTTAACTACTCCCTCCGT 57.833 47.619 7.22 0.00 0.00 4.69
9346 15437 3.504375 ACTGTTAACTACTCCCTCCGTT 58.496 45.455 7.22 0.00 0.00 4.44
9347 15438 3.509184 ACTGTTAACTACTCCCTCCGTTC 59.491 47.826 7.22 0.00 0.00 3.95
9348 15439 2.489329 TGTTAACTACTCCCTCCGTTCG 59.511 50.000 7.22 0.00 0.00 3.95
9349 15440 2.749621 GTTAACTACTCCCTCCGTTCGA 59.250 50.000 0.00 0.00 0.00 3.71
9350 15441 1.915141 AACTACTCCCTCCGTTCGAA 58.085 50.000 0.00 0.00 0.00 3.71
9351 15442 1.915141 ACTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
9352 15443 2.454538 ACTACTCCCTCCGTTCGAAAT 58.545 47.619 0.00 0.00 0.00 2.17
9353 15444 2.830321 ACTACTCCCTCCGTTCGAAATT 59.170 45.455 0.00 0.00 0.00 1.82
9354 15445 4.019174 ACTACTCCCTCCGTTCGAAATTA 58.981 43.478 0.00 0.00 0.00 1.40
9355 15446 4.648307 ACTACTCCCTCCGTTCGAAATTAT 59.352 41.667 0.00 0.00 0.00 1.28
9356 15447 4.482952 ACTCCCTCCGTTCGAAATTATT 57.517 40.909 0.00 0.00 0.00 1.40
9357 15448 4.840271 ACTCCCTCCGTTCGAAATTATTT 58.160 39.130 0.00 0.00 0.00 1.40
9358 15449 4.634443 ACTCCCTCCGTTCGAAATTATTTG 59.366 41.667 0.00 0.00 0.00 2.32
9359 15450 4.581868 TCCCTCCGTTCGAAATTATTTGT 58.418 39.130 0.00 0.00 0.00 2.83
9360 15451 4.632688 TCCCTCCGTTCGAAATTATTTGTC 59.367 41.667 0.00 0.00 0.00 3.18
9361 15452 4.493545 CCCTCCGTTCGAAATTATTTGTCG 60.494 45.833 0.00 0.00 36.12 4.35
9362 15453 3.993547 TCCGTTCGAAATTATTTGTCGC 58.006 40.909 0.00 0.00 34.80 5.19
9363 15454 3.432592 TCCGTTCGAAATTATTTGTCGCA 59.567 39.130 0.00 0.00 34.80 5.10
9364 15455 3.778718 CCGTTCGAAATTATTTGTCGCAG 59.221 43.478 0.00 0.00 34.80 5.18
9365 15456 4.434989 CCGTTCGAAATTATTTGTCGCAGA 60.435 41.667 0.00 0.00 34.80 4.26
9366 15457 5.076765 CGTTCGAAATTATTTGTCGCAGAA 58.923 37.500 0.00 0.00 39.69 3.02
9367 15458 5.562248 CGTTCGAAATTATTTGTCGCAGAAA 59.438 36.000 0.00 0.00 39.69 2.52
9368 15459 6.248420 CGTTCGAAATTATTTGTCGCAGAAAT 59.752 34.615 0.00 0.00 39.69 2.17
9369 15460 7.375781 GTTCGAAATTATTTGTCGCAGAAATG 58.624 34.615 0.00 0.00 39.69 2.32
9370 15461 6.027131 TCGAAATTATTTGTCGCAGAAATGG 58.973 36.000 0.00 0.00 39.69 3.16
9371 15462 6.027131 CGAAATTATTTGTCGCAGAAATGGA 58.973 36.000 0.00 0.00 39.69 3.41
9372 15463 6.692681 CGAAATTATTTGTCGCAGAAATGGAT 59.307 34.615 0.00 0.00 39.69 3.41
9373 15464 7.305590 CGAAATTATTTGTCGCAGAAATGGATG 60.306 37.037 0.00 0.00 39.69 3.51
9374 15465 5.895636 TTATTTGTCGCAGAAATGGATGT 57.104 34.783 0.00 0.00 39.69 3.06
9375 15466 6.993786 TTATTTGTCGCAGAAATGGATGTA 57.006 33.333 0.00 0.00 39.69 2.29
9376 15467 7.566760 TTATTTGTCGCAGAAATGGATGTAT 57.433 32.000 0.00 0.00 39.69 2.29
9377 15468 5.484173 TTTGTCGCAGAAATGGATGTATC 57.516 39.130 0.00 0.00 39.69 2.24
9378 15469 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
9379 15470 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
9380 15471 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
9381 15472 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
9382 15473 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
9383 15474 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
9384 15475 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
9385 15476 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
9386 15477 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
9387 15478 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
9411 15502 8.818141 TTTTAGCTCTAGATACATCCATTTCG 57.182 34.615 0.00 0.00 0.00 3.46
9412 15503 5.398603 AGCTCTAGATACATCCATTTCGG 57.601 43.478 0.00 0.00 0.00 4.30
9425 15516 4.915704 TCCATTTCGGAATTATTTGTCGC 58.084 39.130 0.00 0.00 42.52 5.19
9426 15517 4.396478 TCCATTTCGGAATTATTTGTCGCA 59.604 37.500 0.00 0.00 42.52 5.10
9427 15518 4.734854 CCATTTCGGAATTATTTGTCGCAG 59.265 41.667 0.00 0.00 36.56 5.18
9428 15519 5.448496 CCATTTCGGAATTATTTGTCGCAGA 60.448 40.000 0.00 0.00 36.56 4.26
9429 15520 5.614923 TTTCGGAATTATTTGTCGCAGAA 57.385 34.783 0.00 0.00 39.69 3.02
9430 15521 5.614923 TTCGGAATTATTTGTCGCAGAAA 57.385 34.783 0.00 0.00 39.69 2.52
9431 15522 5.811399 TCGGAATTATTTGTCGCAGAAAT 57.189 34.783 0.00 0.00 39.69 2.17
9432 15523 5.568482 TCGGAATTATTTGTCGCAGAAATG 58.432 37.500 0.00 0.00 39.69 2.32
9433 15524 4.734854 CGGAATTATTTGTCGCAGAAATGG 59.265 41.667 0.00 0.00 39.69 3.16
9434 15525 5.448496 CGGAATTATTTGTCGCAGAAATGGA 60.448 40.000 0.00 0.00 39.69 3.41
9435 15526 6.507023 GGAATTATTTGTCGCAGAAATGGAT 58.493 36.000 0.00 0.00 39.69 3.41
9436 15527 6.418819 GGAATTATTTGTCGCAGAAATGGATG 59.581 38.462 0.00 0.00 39.69 3.51
9437 15528 5.895636 TTATTTGTCGCAGAAATGGATGT 57.104 34.783 0.00 0.00 39.69 3.06
9438 15529 6.993786 TTATTTGTCGCAGAAATGGATGTA 57.006 33.333 0.00 0.00 39.69 2.29
9439 15530 7.566760 TTATTTGTCGCAGAAATGGATGTAT 57.433 32.000 0.00 0.00 39.69 2.29
9440 15531 5.484173 TTTGTCGCAGAAATGGATGTATC 57.516 39.130 0.00 0.00 39.69 2.24
9441 15532 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
9442 15533 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
9443 15534 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
9444 15535 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
9445 15536 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
9446 15537 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
9447 15538 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
9448 15539 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
9449 15540 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
9450 15541 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
9490 15581 6.827641 TCCATTTTCGAGACAAGTAATTTCG 58.172 36.000 0.00 0.00 0.00 3.46
9491 15582 6.647481 TCCATTTTCGAGACAAGTAATTTCGA 59.353 34.615 0.00 0.00 38.38 3.71
9492 15583 7.171848 TCCATTTTCGAGACAAGTAATTTCGAA 59.828 33.333 6.78 6.78 45.23 3.71
9493 15584 7.268447 CCATTTTCGAGACAAGTAATTTCGAAC 59.732 37.037 9.65 0.00 46.15 3.95
9494 15585 5.490472 TTCGAGACAAGTAATTTCGAACG 57.510 39.130 0.00 0.00 43.00 3.95
9495 15586 3.916172 TCGAGACAAGTAATTTCGAACGG 59.084 43.478 0.00 0.00 37.35 4.44
9496 15587 3.916172 CGAGACAAGTAATTTCGAACGGA 59.084 43.478 0.00 0.00 33.38 4.69
9497 15588 4.030306 CGAGACAAGTAATTTCGAACGGAG 59.970 45.833 0.00 0.00 33.38 4.63
9498 15589 4.243270 AGACAAGTAATTTCGAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
9499 15590 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
9500 15591 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
9501 15592 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
9502 15593 2.830321 AGTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
9503 15594 4.019174 AGTAATTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
9504 15595 2.955477 ATTTCGAACGGAGGGAGTAC 57.045 50.000 0.00 0.00 0.00 2.73
9525 15616 2.223377 CCTGGTAGAACTTTCGTTGTGC 59.777 50.000 0.00 0.00 32.39 4.57
9571 15662 1.657804 AACCTAGGCTAGTGCTTGGT 58.342 50.000 19.68 7.85 39.59 3.67
9581 15672 2.123338 TGCTTGGTTGCCTTGGCT 60.123 55.556 13.18 0.00 0.00 4.75
9608 15699 3.081409 GTGGCCGGAGCTAAGGGA 61.081 66.667 5.05 0.00 39.73 4.20
9609 15700 2.764128 TGGCCGGAGCTAAGGGAG 60.764 66.667 5.05 0.00 39.73 4.30
9618 15709 3.771160 CTAAGGGAGCGTGGGCGT 61.771 66.667 0.00 0.00 46.35 5.68
9619 15710 4.077184 TAAGGGAGCGTGGGCGTG 62.077 66.667 0.00 0.00 46.35 5.34
9723 15814 2.739287 TGCCGCGGTCCTTTAACG 60.739 61.111 28.70 0.00 0.00 3.18
9724 15815 2.432972 GCCGCGGTCCTTTAACGA 60.433 61.111 28.70 0.00 0.00 3.85
9725 15816 2.733671 GCCGCGGTCCTTTAACGAC 61.734 63.158 28.70 0.32 0.00 4.34
9726 15817 2.438954 CCGCGGTCCTTTAACGACG 61.439 63.158 19.50 0.00 0.00 5.12
9727 15818 1.442520 CGCGGTCCTTTAACGACGA 60.443 57.895 0.00 0.00 32.15 4.20
9728 15819 1.400990 CGCGGTCCTTTAACGACGAG 61.401 60.000 0.00 0.00 32.15 4.18
9729 15820 1.074872 GCGGTCCTTTAACGACGAGG 61.075 60.000 0.00 0.00 0.00 4.63
9730 15821 1.074872 CGGTCCTTTAACGACGAGGC 61.075 60.000 0.00 0.00 0.00 4.70
9731 15822 1.074872 GGTCCTTTAACGACGAGGCG 61.075 60.000 0.00 0.00 37.29 5.52
9732 15823 1.074872 GTCCTTTAACGACGAGGCGG 61.075 60.000 0.00 0.00 35.12 6.13
9733 15824 1.080298 CCTTTAACGACGAGGCGGT 60.080 57.895 0.00 0.00 35.12 5.68
9734 15825 1.349259 CCTTTAACGACGAGGCGGTG 61.349 60.000 0.00 0.00 35.12 4.94
9735 15826 1.952266 CTTTAACGACGAGGCGGTGC 61.952 60.000 0.00 0.00 35.12 5.01
9736 15827 4.764336 TAACGACGAGGCGGTGCG 62.764 66.667 0.00 0.00 35.12 5.34
9742 15833 4.735132 CGAGGCGGTGCGGAAAGA 62.735 66.667 0.00 0.00 0.00 2.52
9743 15834 2.358247 GAGGCGGTGCGGAAAGAA 60.358 61.111 0.00 0.00 0.00 2.52
9744 15835 2.358737 AGGCGGTGCGGAAAGAAG 60.359 61.111 0.00 0.00 0.00 2.85
9745 15836 2.358247 GGCGGTGCGGAAAGAAGA 60.358 61.111 0.00 0.00 0.00 2.87
9746 15837 2.677979 GGCGGTGCGGAAAGAAGAC 61.678 63.158 0.00 0.00 0.00 3.01
9747 15838 2.677979 GCGGTGCGGAAAGAAGACC 61.678 63.158 0.00 0.00 0.00 3.85
9755 15846 1.861971 GGAAAGAAGACCGACGTTGT 58.138 50.000 1.30 0.00 0.00 3.32
9756 15847 1.525619 GGAAAGAAGACCGACGTTGTG 59.474 52.381 1.30 0.00 0.00 3.33
9757 15848 1.525619 GAAAGAAGACCGACGTTGTGG 59.474 52.381 1.30 1.33 0.00 4.17
9758 15849 0.878961 AAGAAGACCGACGTTGTGGC 60.879 55.000 1.30 0.00 0.00 5.01
9759 15850 1.593209 GAAGACCGACGTTGTGGCA 60.593 57.895 1.30 0.00 0.00 4.92
9760 15851 1.557443 GAAGACCGACGTTGTGGCAG 61.557 60.000 1.30 0.00 0.00 4.85
9761 15852 3.712881 GACCGACGTTGTGGCAGC 61.713 66.667 1.30 0.00 0.00 5.25
9764 15855 3.276091 CGACGTTGTGGCAGCCAA 61.276 61.111 18.28 3.70 34.18 4.52
9765 15856 2.331451 GACGTTGTGGCAGCCAAC 59.669 61.111 18.28 11.31 39.01 3.77
9766 15857 2.439338 ACGTTGTGGCAGCCAACA 60.439 55.556 18.28 14.07 41.76 3.33
9767 15858 2.026014 CGTTGTGGCAGCCAACAC 59.974 61.111 18.28 14.83 41.76 3.32
9768 15859 2.026014 GTTGTGGCAGCCAACACG 59.974 61.111 18.28 0.00 41.40 4.49
9769 15860 3.215568 TTGTGGCAGCCAACACGG 61.216 61.111 18.28 0.00 40.39 4.94
9778 15869 2.600173 CCAACACGGGGGCATGTT 60.600 61.111 0.00 0.00 39.63 2.71
9779 15870 2.206536 CCAACACGGGGGCATGTTT 61.207 57.895 0.00 0.00 36.92 2.83
9780 15871 1.745264 CAACACGGGGGCATGTTTT 59.255 52.632 0.00 0.00 36.92 2.43
9781 15872 0.105778 CAACACGGGGGCATGTTTTT 59.894 50.000 0.00 0.00 36.92 1.94
9795 15886 3.302344 TTTTTGGGAGCAGCCGCC 61.302 61.111 0.00 0.00 39.83 6.13
9810 15901 2.502510 GCCGCAAGCGTGATGTTG 60.503 61.111 13.80 0.00 37.81 3.33
9811 15902 2.965147 GCCGCAAGCGTGATGTTGA 61.965 57.895 13.80 0.00 37.81 3.18
9812 15903 1.133253 CCGCAAGCGTGATGTTGAG 59.867 57.895 13.80 0.00 37.81 3.02
9813 15904 1.133253 CGCAAGCGTGATGTTGAGG 59.867 57.895 2.99 0.00 34.35 3.86
9814 15905 1.503542 GCAAGCGTGATGTTGAGGG 59.496 57.895 2.99 0.00 0.00 4.30
9815 15906 1.237285 GCAAGCGTGATGTTGAGGGT 61.237 55.000 2.99 0.00 0.00 4.34
9816 15907 0.518636 CAAGCGTGATGTTGAGGGTG 59.481 55.000 0.00 0.00 0.00 4.61
9817 15908 0.108585 AAGCGTGATGTTGAGGGTGT 59.891 50.000 0.00 0.00 0.00 4.16
9818 15909 0.320771 AGCGTGATGTTGAGGGTGTC 60.321 55.000 0.00 0.00 0.00 3.67
9819 15910 1.626654 GCGTGATGTTGAGGGTGTCG 61.627 60.000 0.00 0.00 0.00 4.35
9820 15911 0.038618 CGTGATGTTGAGGGTGTCGA 60.039 55.000 0.00 0.00 0.00 4.20
9821 15912 1.404181 CGTGATGTTGAGGGTGTCGAT 60.404 52.381 0.00 0.00 0.00 3.59
9822 15913 2.271800 GTGATGTTGAGGGTGTCGATC 58.728 52.381 0.00 0.00 0.00 3.69
9823 15914 1.899142 TGATGTTGAGGGTGTCGATCA 59.101 47.619 0.00 0.00 0.00 2.92
9824 15915 2.501316 TGATGTTGAGGGTGTCGATCAT 59.499 45.455 0.00 0.00 0.00 2.45
9825 15916 2.385013 TGTTGAGGGTGTCGATCATG 57.615 50.000 0.00 0.00 0.00 3.07
9826 15917 1.899142 TGTTGAGGGTGTCGATCATGA 59.101 47.619 0.00 0.00 0.00 3.07
9827 15918 2.501316 TGTTGAGGGTGTCGATCATGAT 59.499 45.455 8.25 8.25 0.00 2.45
9828 15919 3.126831 GTTGAGGGTGTCGATCATGATC 58.873 50.000 23.42 23.42 34.56 2.92
9829 15920 2.670939 TGAGGGTGTCGATCATGATCT 58.329 47.619 28.48 11.84 35.72 2.75
9830 15921 3.033909 TGAGGGTGTCGATCATGATCTT 58.966 45.455 28.48 4.32 35.72 2.40
9831 15922 3.452264 TGAGGGTGTCGATCATGATCTTT 59.548 43.478 28.48 9.72 35.72 2.52
9832 15923 3.801698 AGGGTGTCGATCATGATCTTTG 58.198 45.455 28.48 16.18 35.72 2.77
9833 15924 3.198635 AGGGTGTCGATCATGATCTTTGT 59.801 43.478 28.48 8.14 35.72 2.83
9834 15925 3.557595 GGGTGTCGATCATGATCTTTGTC 59.442 47.826 28.48 16.66 35.72 3.18
9835 15926 3.243877 GGTGTCGATCATGATCTTTGTCG 59.756 47.826 28.48 18.46 35.72 4.35
9836 15927 3.859961 GTGTCGATCATGATCTTTGTCGT 59.140 43.478 28.48 0.00 35.72 4.34
9837 15928 4.027295 GTGTCGATCATGATCTTTGTCGTC 60.027 45.833 28.48 16.37 35.72 4.20
9838 15929 4.105486 GTCGATCATGATCTTTGTCGTCA 58.895 43.478 28.48 3.28 35.72 4.35
9839 15930 4.205996 GTCGATCATGATCTTTGTCGTCAG 59.794 45.833 28.48 12.39 35.72 3.51
9840 15931 4.108336 CGATCATGATCTTTGTCGTCAGT 58.892 43.478 28.48 0.00 35.72 3.41
9841 15932 4.027050 CGATCATGATCTTTGTCGTCAGTG 60.027 45.833 28.48 8.64 35.72 3.66
9842 15933 3.588955 TCATGATCTTTGTCGTCAGTGG 58.411 45.455 0.00 0.00 0.00 4.00
9843 15934 2.455674 TGATCTTTGTCGTCAGTGGG 57.544 50.000 0.00 0.00 0.00 4.61
9844 15935 1.691976 TGATCTTTGTCGTCAGTGGGT 59.308 47.619 0.00 0.00 0.00 4.51
9845 15936 2.104111 TGATCTTTGTCGTCAGTGGGTT 59.896 45.455 0.00 0.00 0.00 4.11
9846 15937 1.948104 TCTTTGTCGTCAGTGGGTTG 58.052 50.000 0.00 0.00 0.00 3.77
9847 15938 1.483004 TCTTTGTCGTCAGTGGGTTGA 59.517 47.619 0.00 0.00 0.00 3.18
9848 15939 2.104111 TCTTTGTCGTCAGTGGGTTGAT 59.896 45.455 0.00 0.00 0.00 2.57
9849 15940 2.163818 TTGTCGTCAGTGGGTTGATC 57.836 50.000 0.00 0.00 0.00 2.92
9850 15941 0.038618 TGTCGTCAGTGGGTTGATCG 60.039 55.000 0.00 0.00 0.00 3.69
9851 15942 0.736325 GTCGTCAGTGGGTTGATCGG 60.736 60.000 0.00 0.00 0.00 4.18
9852 15943 1.183030 TCGTCAGTGGGTTGATCGGT 61.183 55.000 0.00 0.00 0.00 4.69
9853 15944 0.320421 CGTCAGTGGGTTGATCGGTT 60.320 55.000 0.00 0.00 0.00 4.44
9854 15945 1.439679 GTCAGTGGGTTGATCGGTTC 58.560 55.000 0.00 0.00 0.00 3.62
9855 15946 1.002087 GTCAGTGGGTTGATCGGTTCT 59.998 52.381 0.00 0.00 0.00 3.01
9856 15947 1.001974 TCAGTGGGTTGATCGGTTCTG 59.998 52.381 0.00 0.00 0.00 3.02
9857 15948 0.321653 AGTGGGTTGATCGGTTCTGC 60.322 55.000 0.00 0.00 0.00 4.26
9858 15949 1.002624 TGGGTTGATCGGTTCTGCC 60.003 57.895 0.00 0.00 0.00 4.85
9859 15950 1.749258 GGGTTGATCGGTTCTGCCC 60.749 63.158 0.00 0.00 33.84 5.36
9860 15951 1.299976 GGTTGATCGGTTCTGCCCT 59.700 57.895 0.00 0.00 0.00 5.19
9861 15952 0.322546 GGTTGATCGGTTCTGCCCTT 60.323 55.000 0.00 0.00 0.00 3.95
9862 15953 0.804989 GTTGATCGGTTCTGCCCTTG 59.195 55.000 0.00 0.00 0.00 3.61
9863 15954 0.400213 TTGATCGGTTCTGCCCTTGT 59.600 50.000 0.00 0.00 0.00 3.16
9864 15955 0.321564 TGATCGGTTCTGCCCTTGTG 60.322 55.000 0.00 0.00 0.00 3.33
9865 15956 1.648467 GATCGGTTCTGCCCTTGTGC 61.648 60.000 0.00 0.00 0.00 4.57
9866 15957 2.129555 ATCGGTTCTGCCCTTGTGCT 62.130 55.000 0.00 0.00 0.00 4.40
9867 15958 2.328099 CGGTTCTGCCCTTGTGCTC 61.328 63.158 0.00 0.00 0.00 4.26
9868 15959 2.328099 GGTTCTGCCCTTGTGCTCG 61.328 63.158 0.00 0.00 0.00 5.03
9869 15960 2.669569 TTCTGCCCTTGTGCTCGC 60.670 61.111 0.00 0.00 0.00 5.03
9870 15961 3.474486 TTCTGCCCTTGTGCTCGCA 62.474 57.895 0.00 0.00 0.00 5.10
9871 15962 2.749044 CTGCCCTTGTGCTCGCAT 60.749 61.111 0.00 0.00 0.00 4.73
9872 15963 2.282391 TGCCCTTGTGCTCGCATT 60.282 55.556 0.00 0.00 0.00 3.56
9873 15964 1.870055 CTGCCCTTGTGCTCGCATTT 61.870 55.000 0.00 0.00 0.00 2.32
9874 15965 0.607762 TGCCCTTGTGCTCGCATTTA 60.608 50.000 0.00 0.00 0.00 1.40
9875 15966 0.740737 GCCCTTGTGCTCGCATTTAT 59.259 50.000 0.00 0.00 0.00 1.40
9876 15967 1.268743 GCCCTTGTGCTCGCATTTATC 60.269 52.381 0.00 0.00 0.00 1.75
9877 15968 1.334869 CCCTTGTGCTCGCATTTATCC 59.665 52.381 0.00 0.00 0.00 2.59
9878 15969 2.292267 CCTTGTGCTCGCATTTATCCT 58.708 47.619 0.00 0.00 0.00 3.24
9879 15970 3.466836 CCTTGTGCTCGCATTTATCCTA 58.533 45.455 0.00 0.00 0.00 2.94
9880 15971 3.496130 CCTTGTGCTCGCATTTATCCTAG 59.504 47.826 0.00 0.00 0.00 3.02
9881 15972 4.371786 CTTGTGCTCGCATTTATCCTAGA 58.628 43.478 0.00 0.00 0.00 2.43
9882 15973 4.607293 TGTGCTCGCATTTATCCTAGAT 57.393 40.909 0.00 0.00 0.00 1.98
9883 15974 4.960938 TGTGCTCGCATTTATCCTAGATT 58.039 39.130 0.00 0.00 0.00 2.40
9884 15975 5.368145 TGTGCTCGCATTTATCCTAGATTT 58.632 37.500 0.00 0.00 0.00 2.17
9885 15976 6.521162 TGTGCTCGCATTTATCCTAGATTTA 58.479 36.000 0.00 0.00 0.00 1.40
9886 15977 7.161404 TGTGCTCGCATTTATCCTAGATTTAT 58.839 34.615 0.00 0.00 0.00 1.40
9887 15978 7.661437 TGTGCTCGCATTTATCCTAGATTTATT 59.339 33.333 0.00 0.00 0.00 1.40
9888 15979 8.507249 GTGCTCGCATTTATCCTAGATTTATTT 58.493 33.333 0.00 0.00 0.00 1.40
9889 15980 9.066892 TGCTCGCATTTATCCTAGATTTATTTT 57.933 29.630 0.00 0.00 0.00 1.82
9901 15992 9.063615 TCCTAGATTTATTTTAAGATTTCCGGC 57.936 33.333 0.00 0.00 0.00 6.13
9902 15993 8.015658 CCTAGATTTATTTTAAGATTTCCGGCG 58.984 37.037 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.202734 CCACGCTCCATGATCTTGGAT 60.203 52.381 25.92 12.37 44.66 3.41
261 370 1.141053 GGGCCCTCGTAACAGAATCAT 59.859 52.381 17.04 0.00 0.00 2.45
269 378 4.546829 TCATATAATGGGCCCTCGTAAC 57.453 45.455 25.70 0.00 0.00 2.50
273 382 3.703001 ACTTCATATAATGGGCCCTCG 57.297 47.619 25.70 3.27 0.00 4.63
288 397 1.896660 GGCCCTTGTGCGAACTTCA 60.897 57.895 0.00 0.00 0.00 3.02
340 449 3.834231 CCAACTTTCCCATGAAACATCCT 59.166 43.478 0.00 0.00 35.58 3.24
374 483 3.282021 ACATCGGGTTCAATGGAATCTG 58.718 45.455 0.00 0.00 41.12 2.90
375 484 3.652057 ACATCGGGTTCAATGGAATCT 57.348 42.857 0.00 0.00 34.44 2.40
390 499 7.133891 AGAAATTACAGGAGAAACAACATCG 57.866 36.000 0.00 0.00 0.00 3.84
401 510 4.003648 ACCGCTTCAAGAAATTACAGGAG 58.996 43.478 0.00 0.00 0.00 3.69
403 512 3.127030 GGACCGCTTCAAGAAATTACAGG 59.873 47.826 0.00 0.00 0.00 4.00
1127 4189 3.904136 AGCATCGAACAACAAAAGGAG 57.096 42.857 0.00 0.00 0.00 3.69
1298 4373 5.236478 CGTTCATTTCCATTAGCGACCTTAT 59.764 40.000 0.00 0.00 0.00 1.73
1310 4385 0.600557 TTTGCGCCGTTCATTTCCAT 59.399 45.000 4.18 0.00 0.00 3.41
1354 4429 1.280457 CCCTGCCCTACTCTTCAGTT 58.720 55.000 0.00 0.00 33.62 3.16
1362 4437 0.178903 TCAGTTGACCCTGCCCTACT 60.179 55.000 0.00 0.00 32.32 2.57
1440 4515 1.199789 CCAACGCAATGTGCAGTATGT 59.800 47.619 0.61 0.00 45.36 2.29
1456 4533 9.811655 CATAATTACGATCATGTTATGACCAAC 57.188 33.333 9.69 0.00 43.01 3.77
1513 4590 1.482182 AGATAGTGCGCACCATCTTCA 59.518 47.619 35.71 15.93 36.60 3.02
1528 4605 6.889722 TCCAAAAATTACAGGGGTCAAGATAG 59.110 38.462 0.00 0.00 0.00 2.08
1602 4681 5.286438 CACGACACTTATTATGGATCGGAA 58.714 41.667 0.00 0.00 32.56 4.30
1612 4691 7.436118 ACTCACTAAAACCACGACACTTATTA 58.564 34.615 0.00 0.00 0.00 0.98
1646 4725 7.351414 TCGAATAGTGAGAAGTGAAAACATG 57.649 36.000 0.00 0.00 0.00 3.21
1699 4778 5.223382 ACTCTAACACAGTCATTGTCTTCG 58.777 41.667 0.00 0.00 38.16 3.79
2100 5270 1.000019 CTCCCAGGTGAGGACGGTA 60.000 63.158 0.00 0.00 0.00 4.02
2539 5947 1.002430 AGCGATCCAAGACAGAAGCAA 59.998 47.619 0.00 0.00 0.00 3.91
2540 5948 0.610174 AGCGATCCAAGACAGAAGCA 59.390 50.000 0.00 0.00 0.00 3.91
2768 6186 0.669625 GCGGACTTTTAGGTCGCTGT 60.670 55.000 0.00 0.00 37.12 4.40
3322 9039 2.726351 GCGCTGCTAGAAGGAGGGT 61.726 63.158 12.72 0.00 45.91 4.34
3350 9067 4.572389 AGGCTCAAAACATCTTATACGCAG 59.428 41.667 0.00 0.00 0.00 5.18
3351 9068 4.513442 AGGCTCAAAACATCTTATACGCA 58.487 39.130 0.00 0.00 0.00 5.24
3352 9069 4.570772 TGAGGCTCAAAACATCTTATACGC 59.429 41.667 16.28 0.00 0.00 4.42
3353 9070 6.851222 ATGAGGCTCAAAACATCTTATACG 57.149 37.500 22.84 0.00 0.00 3.06
3354 9071 8.894768 AGTATGAGGCTCAAAACATCTTATAC 57.105 34.615 22.84 14.35 31.37 1.47
3355 9072 8.704668 TGAGTATGAGGCTCAAAACATCTTATA 58.295 33.333 22.84 2.00 39.70 0.98
3356 9073 7.568349 TGAGTATGAGGCTCAAAACATCTTAT 58.432 34.615 22.84 3.07 39.70 1.73
3357 9074 6.946340 TGAGTATGAGGCTCAAAACATCTTA 58.054 36.000 22.84 3.57 39.70 2.10
3358 9075 5.809001 TGAGTATGAGGCTCAAAACATCTT 58.191 37.500 22.84 4.66 39.70 2.40
3359 9076 5.046014 ACTGAGTATGAGGCTCAAAACATCT 60.046 40.000 22.84 12.68 41.74 2.90
3360 9077 5.064452 CACTGAGTATGAGGCTCAAAACATC 59.936 44.000 22.84 18.67 41.74 3.06
3376 9093 9.431887 GTAAAATTCACCTCAATACACTGAGTA 57.568 33.333 0.00 0.00 41.15 2.59
3450 9167 7.660208 GGAACCTTAACTCATTGACTCACTAAA 59.340 37.037 0.00 0.00 0.00 1.85
3451 9168 7.159372 GGAACCTTAACTCATTGACTCACTAA 58.841 38.462 0.00 0.00 0.00 2.24
3466 9183 6.673154 ACGTAATAGCAATGGAACCTTAAC 57.327 37.500 0.00 0.00 0.00 2.01
3596 9321 9.744468 GTTGTTTTCCACAAGTAAACATAAGAT 57.256 29.630 0.00 0.00 46.49 2.40
3597 9322 8.740906 TGTTGTTTTCCACAAGTAAACATAAGA 58.259 29.630 0.00 0.00 46.49 2.10
3598 9323 8.803799 GTGTTGTTTTCCACAAGTAAACATAAG 58.196 33.333 0.00 0.00 46.49 1.73
3599 9324 8.524487 AGTGTTGTTTTCCACAAGTAAACATAA 58.476 29.630 0.00 0.00 46.49 1.90
3600 9325 8.057536 AGTGTTGTTTTCCACAAGTAAACATA 57.942 30.769 0.00 0.00 46.49 2.29
3601 9326 6.930731 AGTGTTGTTTTCCACAAGTAAACAT 58.069 32.000 0.00 0.00 46.49 2.71
3602 9327 6.334102 AGTGTTGTTTTCCACAAGTAAACA 57.666 33.333 0.00 0.00 46.49 2.83
3603 9328 7.808856 TGTTAGTGTTGTTTTCCACAAGTAAAC 59.191 33.333 0.00 0.00 46.49 2.01
3604 9329 7.883217 TGTTAGTGTTGTTTTCCACAAGTAAA 58.117 30.769 0.00 0.00 46.49 2.01
3605 9330 7.450124 TGTTAGTGTTGTTTTCCACAAGTAA 57.550 32.000 0.00 0.00 46.49 2.24
3727 9452 2.624495 AGCATGCTCCCATACTATCCA 58.376 47.619 16.30 0.00 0.00 3.41
3728 9453 3.710209 AAGCATGCTCCCATACTATCC 57.290 47.619 22.93 0.00 0.00 2.59
3857 9605 1.191535 AGCTCATGGCAAATGCACAT 58.808 45.000 7.80 5.74 44.79 3.21
3858 9606 1.746787 CTAGCTCATGGCAAATGCACA 59.253 47.619 7.80 3.58 44.79 4.57
3859 9607 1.747355 ACTAGCTCATGGCAAATGCAC 59.253 47.619 7.80 0.00 44.79 4.57
3902 9650 5.186409 AGGCGGAGTTCTGTTAAGTACAATA 59.814 40.000 0.00 0.00 36.02 1.90
3903 9651 4.020485 AGGCGGAGTTCTGTTAAGTACAAT 60.020 41.667 0.00 0.00 36.02 2.71
3904 9652 3.322828 AGGCGGAGTTCTGTTAAGTACAA 59.677 43.478 0.00 0.00 36.02 2.41
3905 9653 2.895404 AGGCGGAGTTCTGTTAAGTACA 59.105 45.455 0.00 0.00 34.95 2.90
3907 9655 4.708421 ACATAGGCGGAGTTCTGTTAAGTA 59.292 41.667 0.00 0.00 0.00 2.24
3908 9656 3.514309 ACATAGGCGGAGTTCTGTTAAGT 59.486 43.478 0.00 0.00 0.00 2.24
3910 9658 4.250464 CAACATAGGCGGAGTTCTGTTAA 58.750 43.478 0.00 0.00 0.00 2.01
3911 9659 3.259876 ACAACATAGGCGGAGTTCTGTTA 59.740 43.478 0.00 0.00 0.00 2.41
3912 9660 2.038557 ACAACATAGGCGGAGTTCTGTT 59.961 45.455 0.00 0.00 0.00 3.16
3913 9661 1.623811 ACAACATAGGCGGAGTTCTGT 59.376 47.619 0.00 0.00 0.00 3.41
3915 9663 2.166664 GAGACAACATAGGCGGAGTTCT 59.833 50.000 0.00 0.00 0.00 3.01
4127 9875 4.274700 GATACGGCGCGCCACCTA 62.275 66.667 45.26 31.13 35.37 3.08
4156 9904 4.680237 TCGCTCACTTGCCACCGG 62.680 66.667 0.00 0.00 0.00 5.28
4210 9958 4.155733 CACTACATCCGGGCGCCA 62.156 66.667 30.85 8.42 0.00 5.69
4229 9977 1.131315 GCGAAGACCCTTGCTCATTTC 59.869 52.381 0.00 0.00 0.00 2.17
4286 10034 1.287503 CGAATCCTCCTAGGCTCGC 59.712 63.158 2.96 0.00 35.00 5.03
4357 10105 1.220206 CTCTCCTCACCGCTGCATT 59.780 57.895 0.00 0.00 0.00 3.56
4616 10364 1.350684 TCTCATTGTGGCCTACTTGCA 59.649 47.619 3.32 0.00 0.00 4.08
4687 10435 2.562738 TGAAGAGCTTCTCACCAATCGA 59.437 45.455 11.16 0.00 40.14 3.59
4732 10480 6.945435 TCAAAACATGTGTTAGATGTACCCAT 59.055 34.615 0.00 0.00 37.25 4.00
4900 10648 5.877012 TGAAATCAATCTGGCTAGAGTGTTC 59.123 40.000 24.03 20.65 46.28 3.18
5022 10770 1.662446 GACACGAACCCGAAAGCGA 60.662 57.895 0.00 0.00 40.82 4.93
5032 10780 0.108520 TTATCCCGCTGGACACGAAC 60.109 55.000 0.00 0.00 45.58 3.95
5094 10842 0.685097 TGAACGCCTGAGCTACCTTT 59.315 50.000 0.00 0.00 36.60 3.11
5095 10843 0.685097 TTGAACGCCTGAGCTACCTT 59.315 50.000 0.00 0.00 36.60 3.50
5169 10917 1.938577 CAAGTCGCCATCTTCATCCAG 59.061 52.381 0.00 0.00 0.00 3.86
5228 10976 1.872773 ATCTTCGCTTCTCCTTCCCT 58.127 50.000 0.00 0.00 0.00 4.20
5444 11193 3.323979 TCTTATAGATGTCCCTTTCGCCC 59.676 47.826 0.00 0.00 0.00 6.13
5495 11244 3.181488 TGCATTTGACTTGGCCAATATCG 60.181 43.478 20.85 9.98 0.00 2.92
5535 11284 2.561419 CCTCGTCCTTCACCAAGAGTTA 59.439 50.000 0.00 0.00 0.00 2.24
5670 11419 3.251484 TGACCTCAAACTCCTGGATTCT 58.749 45.455 0.00 0.00 0.00 2.40
5683 11432 4.447138 TTTAAAGCCTCCTTGACCTCAA 57.553 40.909 0.00 0.00 0.00 3.02
5708 11457 3.512724 CCATTGTCTTGCCTCCTTTCATT 59.487 43.478 0.00 0.00 0.00 2.57
5724 11473 2.424812 GGATACAATCAGGGCCCATTGT 60.425 50.000 32.08 32.08 43.91 2.71
5726 11475 1.147817 GGGATACAATCAGGGCCCATT 59.852 52.381 27.56 13.64 35.63 3.16
5997 11747 2.109128 TCCCAGGCATGAAACCAAACTA 59.891 45.455 0.00 0.00 0.00 2.24
6040 11790 3.592059 TCCATAAGTTGTCGTACCAAGC 58.408 45.455 0.00 0.00 0.00 4.01
6246 11996 3.703001 AATCGGGAAGTCATCAGTGTT 57.297 42.857 0.00 0.00 0.00 3.32
6398 12148 0.258484 TTACCCCCGTCCGACTATCA 59.742 55.000 0.00 0.00 0.00 2.15
6454 12204 7.686434 AGTTCTACTAAGCATAAACCCTTTCA 58.314 34.615 0.00 0.00 0.00 2.69
6466 12216 8.423349 TGTACTTGGTTTTAGTTCTACTAAGCA 58.577 33.333 0.00 0.00 41.23 3.91
6486 12238 2.415168 CGAAACCGCACATCATGTACTT 59.585 45.455 0.00 0.00 0.00 2.24
6507 12259 3.201708 TCCTCCTCACACCTAGTAGTACC 59.798 52.174 0.00 0.00 0.00 3.34
6539 12297 2.595655 GGTACCACCTGGCCATCC 59.404 66.667 5.51 0.00 39.32 3.51
6634 12392 1.027357 CTTCATCCATCCGGCTTTGG 58.973 55.000 10.66 10.66 0.00 3.28
6796 12554 2.829043 TACGCATCTCCGCCACACAC 62.829 60.000 0.00 0.00 0.00 3.82
6797 12555 1.955495 ATACGCATCTCCGCCACACA 61.955 55.000 0.00 0.00 0.00 3.72
7059 12817 3.819564 TGGTGATACTCCAATCCTTCG 57.180 47.619 0.00 0.00 31.50 3.79
7244 13002 8.674263 ATCTTTCCTGCAATTGTCTATTAGAG 57.326 34.615 7.40 0.00 0.00 2.43
7356 13126 6.549736 AGTTTTTGTGGTAGACCTTATTGCTT 59.450 34.615 0.00 0.00 36.82 3.91
7424 13194 4.510711 CCAATGACAGATGAATTCCGAGAG 59.489 45.833 2.27 0.00 0.00 3.20
7539 13312 6.831353 TGGTGTGAAATCTTACTTTTCTTCCA 59.169 34.615 0.00 0.00 34.80 3.53
7555 13453 5.420421 TGAACCTTCATTTTCTGGTGTGAAA 59.580 36.000 0.00 0.00 31.79 2.69
7718 13783 4.568152 ACATGGCCGAAAATTATACAGC 57.432 40.909 0.00 0.00 0.00 4.40
7910 13975 6.458751 CCATGTTTACCATAGCAGTTAAGCAG 60.459 42.308 0.00 0.00 36.85 4.24
7933 13998 1.427368 AGACCTTTGTATGCCAACCCA 59.573 47.619 0.00 0.00 31.20 4.51
8605 14670 1.079819 CTCGTCGCAATGACCCTGT 60.080 57.895 0.00 0.00 45.23 4.00
8625 14690 7.831193 AGAACTCTGCAAATATGTAAACCATCT 59.169 33.333 0.00 0.00 34.86 2.90
8905 14970 2.251600 CCAGAGGCACTTTCAGCAC 58.748 57.895 0.00 0.00 41.55 4.40
9015 15088 1.201877 CGGGCTTTCACGACATAAACG 60.202 52.381 0.00 0.00 0.00 3.60
9017 15090 1.444836 CCGGGCTTTCACGACATAAA 58.555 50.000 0.00 0.00 0.00 1.40
9194 15276 6.435430 TGCGAATAACTGCATCAAATTAGT 57.565 33.333 0.00 0.00 35.90 2.24
9244 15330 6.207417 AGCAAACAACTGCATGAGTAACTTAT 59.793 34.615 0.00 0.00 45.18 1.73
9316 15407 8.578448 AGGGAGTAGTTAACAGTTAGTCTTAG 57.422 38.462 8.61 0.00 0.00 2.18
9337 15428 4.581868 ACAAATAATTTCGAACGGAGGGA 58.418 39.130 0.00 0.00 0.00 4.20
9338 15429 4.493545 CGACAAATAATTTCGAACGGAGGG 60.494 45.833 0.00 0.00 34.62 4.30
9339 15430 4.574759 CGACAAATAATTTCGAACGGAGG 58.425 43.478 0.00 0.00 34.62 4.30
9340 15431 4.019867 GCGACAAATAATTTCGAACGGAG 58.980 43.478 0.00 0.00 34.62 4.63
9341 15432 3.432592 TGCGACAAATAATTTCGAACGGA 59.567 39.130 0.00 0.00 34.62 4.69
9342 15433 3.738399 TGCGACAAATAATTTCGAACGG 58.262 40.909 0.00 0.00 34.62 4.44
9343 15434 4.634000 TCTGCGACAAATAATTTCGAACG 58.366 39.130 0.00 0.00 34.62 3.95
9344 15435 6.904954 TTTCTGCGACAAATAATTTCGAAC 57.095 33.333 0.00 0.00 34.62 3.95
9345 15436 6.526325 CCATTTCTGCGACAAATAATTTCGAA 59.474 34.615 0.00 0.00 34.62 3.71
9346 15437 6.027131 CCATTTCTGCGACAAATAATTTCGA 58.973 36.000 0.79 0.00 34.62 3.71
9347 15438 6.027131 TCCATTTCTGCGACAAATAATTTCG 58.973 36.000 0.00 0.00 35.82 3.46
9348 15439 7.489113 ACATCCATTTCTGCGACAAATAATTTC 59.511 33.333 0.00 0.00 0.00 2.17
9349 15440 7.322664 ACATCCATTTCTGCGACAAATAATTT 58.677 30.769 0.00 0.00 0.00 1.82
9350 15441 6.866480 ACATCCATTTCTGCGACAAATAATT 58.134 32.000 0.00 0.00 0.00 1.40
9351 15442 6.455360 ACATCCATTTCTGCGACAAATAAT 57.545 33.333 0.00 0.00 0.00 1.28
9352 15443 5.895636 ACATCCATTTCTGCGACAAATAA 57.104 34.783 0.00 0.00 0.00 1.40
9353 15444 6.992123 AGATACATCCATTTCTGCGACAAATA 59.008 34.615 0.00 0.00 0.00 1.40
9354 15445 5.824624 AGATACATCCATTTCTGCGACAAAT 59.175 36.000 0.00 0.00 0.00 2.32
9355 15446 5.185454 AGATACATCCATTTCTGCGACAAA 58.815 37.500 0.00 0.00 0.00 2.83
9356 15447 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
9357 15448 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
9358 15449 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
9359 15450 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
9360 15451 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
9361 15452 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
9385 15476 9.429359 CGAAATGGATGTATCTAGAGCTAAAAT 57.571 33.333 0.00 0.00 0.00 1.82
9386 15477 7.872993 CCGAAATGGATGTATCTAGAGCTAAAA 59.127 37.037 0.00 0.00 42.00 1.52
9387 15478 7.232737 TCCGAAATGGATGTATCTAGAGCTAAA 59.767 37.037 0.00 0.00 43.74 1.85
9388 15479 6.719829 TCCGAAATGGATGTATCTAGAGCTAA 59.280 38.462 0.00 0.00 43.74 3.09
9389 15480 6.246163 TCCGAAATGGATGTATCTAGAGCTA 58.754 40.000 0.00 0.00 43.74 3.32
9390 15481 5.080337 TCCGAAATGGATGTATCTAGAGCT 58.920 41.667 0.00 0.00 43.74 4.09
9391 15482 5.392767 TCCGAAATGGATGTATCTAGAGC 57.607 43.478 0.00 0.00 43.74 4.09
9404 15495 4.667262 TGCGACAAATAATTCCGAAATGG 58.333 39.130 0.00 0.00 40.09 3.16
9405 15496 5.568482 TCTGCGACAAATAATTCCGAAATG 58.432 37.500 0.00 0.00 0.00 2.32
9406 15497 5.811399 TCTGCGACAAATAATTCCGAAAT 57.189 34.783 0.00 0.00 0.00 2.17
9407 15498 5.614923 TTCTGCGACAAATAATTCCGAAA 57.385 34.783 0.00 0.00 0.00 3.46
9408 15499 5.614923 TTTCTGCGACAAATAATTCCGAA 57.385 34.783 0.00 0.00 0.00 4.30
9409 15500 5.448496 CCATTTCTGCGACAAATAATTCCGA 60.448 40.000 0.00 0.00 0.00 4.55
9410 15501 4.734854 CCATTTCTGCGACAAATAATTCCG 59.265 41.667 0.00 0.00 0.00 4.30
9411 15502 5.890334 TCCATTTCTGCGACAAATAATTCC 58.110 37.500 0.00 0.00 0.00 3.01
9412 15503 6.974622 ACATCCATTTCTGCGACAAATAATTC 59.025 34.615 0.00 0.00 0.00 2.17
9413 15504 6.866480 ACATCCATTTCTGCGACAAATAATT 58.134 32.000 0.00 0.00 0.00 1.40
9414 15505 6.455360 ACATCCATTTCTGCGACAAATAAT 57.545 33.333 0.00 0.00 0.00 1.28
9415 15506 5.895636 ACATCCATTTCTGCGACAAATAA 57.104 34.783 0.00 0.00 0.00 1.40
9416 15507 6.992123 AGATACATCCATTTCTGCGACAAATA 59.008 34.615 0.00 0.00 0.00 1.40
9417 15508 5.824624 AGATACATCCATTTCTGCGACAAAT 59.175 36.000 0.00 0.00 0.00 2.32
9418 15509 5.185454 AGATACATCCATTTCTGCGACAAA 58.815 37.500 0.00 0.00 0.00 2.83
9419 15510 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
9420 15511 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
9421 15512 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
9422 15513 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
9423 15514 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
9424 15515 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
9464 15555 8.600625 CGAAATTACTTGTCTCGAAAATGGATA 58.399 33.333 0.00 0.00 0.00 2.59
9465 15556 7.333423 TCGAAATTACTTGTCTCGAAAATGGAT 59.667 33.333 0.00 0.00 35.74 3.41
9466 15557 6.647481 TCGAAATTACTTGTCTCGAAAATGGA 59.353 34.615 0.00 0.00 35.74 3.41
9467 15558 6.827641 TCGAAATTACTTGTCTCGAAAATGG 58.172 36.000 0.00 0.00 35.74 3.16
9468 15559 7.005330 CGTTCGAAATTACTTGTCTCGAAAATG 59.995 37.037 9.69 1.94 46.49 2.32
9469 15560 7.007697 CGTTCGAAATTACTTGTCTCGAAAAT 58.992 34.615 9.69 0.00 46.49 1.82
9470 15561 6.349426 CGTTCGAAATTACTTGTCTCGAAAA 58.651 36.000 9.69 0.00 46.49 2.29
9471 15562 5.107760 CCGTTCGAAATTACTTGTCTCGAAA 60.108 40.000 9.69 0.00 46.49 3.46
9472 15563 4.383649 CCGTTCGAAATTACTTGTCTCGAA 59.616 41.667 0.00 5.10 43.89 3.71
9473 15564 3.916172 CCGTTCGAAATTACTTGTCTCGA 59.084 43.478 0.00 0.00 36.80 4.04
9474 15565 3.916172 TCCGTTCGAAATTACTTGTCTCG 59.084 43.478 0.00 0.00 0.00 4.04
9475 15566 4.326548 CCTCCGTTCGAAATTACTTGTCTC 59.673 45.833 0.00 0.00 0.00 3.36
9476 15567 4.243270 CCTCCGTTCGAAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
9477 15568 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
9478 15569 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
9479 15570 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
9480 15571 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
9481 15572 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
9482 15573 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
9483 15574 3.131046 GGTACTCCCTCCGTTCGAAATTA 59.869 47.826 0.00 0.00 0.00 1.40
9484 15575 2.093816 GGTACTCCCTCCGTTCGAAATT 60.094 50.000 0.00 0.00 0.00 1.82
9485 15576 1.479730 GGTACTCCCTCCGTTCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
9486 15577 0.890683 GGTACTCCCTCCGTTCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
9487 15578 0.038744 AGGTACTCCCTCCGTTCGAA 59.961 55.000 0.00 0.00 40.71 3.71
9488 15579 0.679002 CAGGTACTCCCTCCGTTCGA 60.679 60.000 0.00 0.00 43.86 3.71
9489 15580 1.664321 CCAGGTACTCCCTCCGTTCG 61.664 65.000 0.00 0.00 43.86 3.95
9490 15581 0.614134 ACCAGGTACTCCCTCCGTTC 60.614 60.000 0.00 0.00 43.86 3.95
9491 15582 0.706433 TACCAGGTACTCCCTCCGTT 59.294 55.000 0.00 0.00 43.86 4.44
9492 15583 0.258194 CTACCAGGTACTCCCTCCGT 59.742 60.000 0.00 0.00 43.86 4.69
9493 15584 0.549950 TCTACCAGGTACTCCCTCCG 59.450 60.000 0.00 0.00 43.86 4.63
9494 15585 2.024177 AGTTCTACCAGGTACTCCCTCC 60.024 54.545 0.00 0.00 43.86 4.30
9495 15586 3.385314 AGTTCTACCAGGTACTCCCTC 57.615 52.381 0.00 0.00 43.86 4.30
9496 15587 7.753357 ACGAAAGTTCTACCAGGTACTCCCT 62.753 48.000 0.00 0.00 46.40 4.20
9497 15588 3.119209 CGAAAGTTCTACCAGGTACTCCC 60.119 52.174 0.00 0.00 34.60 4.30
9498 15589 3.509184 ACGAAAGTTCTACCAGGTACTCC 59.491 47.826 0.00 0.00 46.40 3.85
9499 15590 4.780275 ACGAAAGTTCTACCAGGTACTC 57.220 45.455 0.00 0.00 46.40 2.59
9525 15616 8.279970 TCTATTGGATGGACAAACAACATAAG 57.720 34.615 0.00 0.00 33.48 1.73
9616 15707 2.743928 GGAACTCAGGCAGCCACG 60.744 66.667 15.80 4.08 0.00 4.94
9617 15708 2.753029 AGGAACTCAGGCAGCCAC 59.247 61.111 15.80 0.00 0.00 5.01
9707 15798 2.432972 TCGTTAAAGGACCGCGGC 60.433 61.111 28.58 18.35 0.00 6.53
9709 15800 1.400990 CTCGTCGTTAAAGGACCGCG 61.401 60.000 0.00 0.00 29.78 6.46
9710 15801 1.074872 CCTCGTCGTTAAAGGACCGC 61.075 60.000 0.00 0.00 31.44 5.68
9719 15810 4.764336 CGCACCGCCTCGTCGTTA 62.764 66.667 0.00 0.00 0.00 3.18
9725 15816 4.735132 TCTTTCCGCACCGCCTCG 62.735 66.667 0.00 0.00 0.00 4.63
9726 15817 2.358247 TTCTTTCCGCACCGCCTC 60.358 61.111 0.00 0.00 0.00 4.70
9727 15818 2.358737 CTTCTTTCCGCACCGCCT 60.359 61.111 0.00 0.00 0.00 5.52
9728 15819 2.358247 TCTTCTTTCCGCACCGCC 60.358 61.111 0.00 0.00 0.00 6.13
9729 15820 2.677979 GGTCTTCTTTCCGCACCGC 61.678 63.158 0.00 0.00 0.00 5.68
9730 15821 2.380410 CGGTCTTCTTTCCGCACCG 61.380 63.158 0.00 0.00 43.71 4.94
9731 15822 1.005394 TCGGTCTTCTTTCCGCACC 60.005 57.895 0.00 0.00 45.44 5.01
9732 15823 1.615107 CGTCGGTCTTCTTTCCGCAC 61.615 60.000 0.00 0.00 45.44 5.34
9733 15824 1.372499 CGTCGGTCTTCTTTCCGCA 60.372 57.895 0.00 0.00 45.44 5.69
9734 15825 0.942884 AACGTCGGTCTTCTTTCCGC 60.943 55.000 0.00 0.00 45.44 5.54
9735 15826 0.782384 CAACGTCGGTCTTCTTTCCG 59.218 55.000 0.00 0.00 46.93 4.30
9736 15827 1.525619 CACAACGTCGGTCTTCTTTCC 59.474 52.381 0.00 0.00 0.00 3.13
9737 15828 1.525619 CCACAACGTCGGTCTTCTTTC 59.474 52.381 0.00 0.00 0.00 2.62
9738 15829 1.578583 CCACAACGTCGGTCTTCTTT 58.421 50.000 0.00 0.00 0.00 2.52
9739 15830 0.878961 GCCACAACGTCGGTCTTCTT 60.879 55.000 0.00 0.00 0.00 2.52
9740 15831 1.300697 GCCACAACGTCGGTCTTCT 60.301 57.895 0.00 0.00 0.00 2.85
9741 15832 1.557443 CTGCCACAACGTCGGTCTTC 61.557 60.000 0.00 0.00 0.00 2.87
9742 15833 1.594293 CTGCCACAACGTCGGTCTT 60.594 57.895 0.00 0.00 0.00 3.01
9743 15834 2.029073 CTGCCACAACGTCGGTCT 59.971 61.111 0.00 0.00 0.00 3.85
9744 15835 3.712881 GCTGCCACAACGTCGGTC 61.713 66.667 0.00 0.00 0.00 4.79
9747 15838 3.276091 TTGGCTGCCACAACGTCG 61.276 61.111 23.30 0.00 30.78 5.12
9748 15839 2.331451 GTTGGCTGCCACAACGTC 59.669 61.111 23.30 4.28 38.83 4.34
9751 15842 2.026014 CGTGTTGGCTGCCACAAC 59.974 61.111 23.30 20.37 46.30 3.32
9752 15843 3.215568 CCGTGTTGGCTGCCACAA 61.216 61.111 23.30 9.85 30.78 3.33
9761 15852 2.600173 AACATGCCCCCGTGTTGG 60.600 61.111 0.00 0.00 46.54 3.77
9764 15855 4.286447 AAAAACATGCCCCCGTGT 57.714 50.000 0.00 0.00 42.86 4.49
9778 15869 3.302344 GGCGGCTGCTCCCAAAAA 61.302 61.111 18.85 0.00 42.25 1.94
9793 15884 2.502510 CAACATCACGCTTGCGGC 60.503 61.111 19.19 0.00 37.64 6.53
9794 15885 1.133253 CTCAACATCACGCTTGCGG 59.867 57.895 19.19 8.33 0.00 5.69
9795 15886 1.133253 CCTCAACATCACGCTTGCG 59.867 57.895 13.70 13.70 0.00 4.85
9796 15887 1.237285 ACCCTCAACATCACGCTTGC 61.237 55.000 0.00 0.00 0.00 4.01
9797 15888 0.518636 CACCCTCAACATCACGCTTG 59.481 55.000 0.00 0.00 0.00 4.01
9798 15889 0.108585 ACACCCTCAACATCACGCTT 59.891 50.000 0.00 0.00 0.00 4.68
9799 15890 0.320771 GACACCCTCAACATCACGCT 60.321 55.000 0.00 0.00 0.00 5.07
9800 15891 1.626654 CGACACCCTCAACATCACGC 61.627 60.000 0.00 0.00 0.00 5.34
9801 15892 0.038618 TCGACACCCTCAACATCACG 60.039 55.000 0.00 0.00 0.00 4.35
9802 15893 2.271800 GATCGACACCCTCAACATCAC 58.728 52.381 0.00 0.00 0.00 3.06
9803 15894 1.899142 TGATCGACACCCTCAACATCA 59.101 47.619 0.00 0.00 0.00 3.07
9804 15895 2.672961 TGATCGACACCCTCAACATC 57.327 50.000 0.00 0.00 0.00 3.06
9805 15896 2.501316 TCATGATCGACACCCTCAACAT 59.499 45.455 0.00 0.00 0.00 2.71
9806 15897 1.899142 TCATGATCGACACCCTCAACA 59.101 47.619 0.00 0.00 0.00 3.33
9807 15898 2.672961 TCATGATCGACACCCTCAAC 57.327 50.000 0.00 0.00 0.00 3.18
9808 15899 3.033909 AGATCATGATCGACACCCTCAA 58.966 45.455 26.09 0.00 42.48 3.02
9809 15900 2.670939 AGATCATGATCGACACCCTCA 58.329 47.619 26.09 0.00 42.48 3.86
9810 15901 3.742433 AAGATCATGATCGACACCCTC 57.258 47.619 26.09 4.69 42.48 4.30
9811 15902 3.198635 ACAAAGATCATGATCGACACCCT 59.801 43.478 26.09 7.68 42.48 4.34
9812 15903 3.535561 ACAAAGATCATGATCGACACCC 58.464 45.455 26.09 5.24 42.48 4.61
9813 15904 3.243877 CGACAAAGATCATGATCGACACC 59.756 47.826 26.09 16.60 42.48 4.16
9814 15905 3.859961 ACGACAAAGATCATGATCGACAC 59.140 43.478 26.09 17.20 42.48 3.67
9815 15906 4.105486 GACGACAAAGATCATGATCGACA 58.895 43.478 26.09 0.00 42.48 4.35
9816 15907 4.105486 TGACGACAAAGATCATGATCGAC 58.895 43.478 26.09 16.94 42.48 4.20
9817 15908 4.142381 ACTGACGACAAAGATCATGATCGA 60.142 41.667 26.09 3.29 42.48 3.59
9818 15909 4.027050 CACTGACGACAAAGATCATGATCG 60.027 45.833 26.09 18.77 42.48 3.69
9819 15910 4.269603 CCACTGACGACAAAGATCATGATC 59.730 45.833 25.42 25.42 38.09 2.92
9820 15911 4.186926 CCACTGACGACAAAGATCATGAT 58.813 43.478 8.25 8.25 0.00 2.45
9821 15912 3.588955 CCACTGACGACAAAGATCATGA 58.411 45.455 0.00 0.00 0.00 3.07
9822 15913 2.674852 CCCACTGACGACAAAGATCATG 59.325 50.000 0.00 0.00 0.00 3.07
9823 15914 2.303022 ACCCACTGACGACAAAGATCAT 59.697 45.455 0.00 0.00 0.00 2.45
9824 15915 1.691976 ACCCACTGACGACAAAGATCA 59.308 47.619 0.00 0.00 0.00 2.92
9825 15916 2.457366 ACCCACTGACGACAAAGATC 57.543 50.000 0.00 0.00 0.00 2.75
9826 15917 2.104111 TCAACCCACTGACGACAAAGAT 59.896 45.455 0.00 0.00 0.00 2.40
9827 15918 1.483004 TCAACCCACTGACGACAAAGA 59.517 47.619 0.00 0.00 0.00 2.52
9828 15919 1.948104 TCAACCCACTGACGACAAAG 58.052 50.000 0.00 0.00 0.00 2.77
9829 15920 2.489971 GATCAACCCACTGACGACAAA 58.510 47.619 0.00 0.00 0.00 2.83
9830 15921 1.604438 CGATCAACCCACTGACGACAA 60.604 52.381 0.00 0.00 0.00 3.18
9831 15922 0.038618 CGATCAACCCACTGACGACA 60.039 55.000 0.00 0.00 0.00 4.35
9832 15923 0.736325 CCGATCAACCCACTGACGAC 60.736 60.000 0.00 0.00 0.00 4.34
9833 15924 1.183030 ACCGATCAACCCACTGACGA 61.183 55.000 0.00 0.00 0.00 4.20
9834 15925 0.320421 AACCGATCAACCCACTGACG 60.320 55.000 0.00 0.00 0.00 4.35
9835 15926 1.002087 AGAACCGATCAACCCACTGAC 59.998 52.381 0.00 0.00 0.00 3.51
9836 15927 1.001974 CAGAACCGATCAACCCACTGA 59.998 52.381 0.00 0.00 0.00 3.41
9837 15928 1.442769 CAGAACCGATCAACCCACTG 58.557 55.000 0.00 0.00 0.00 3.66
9838 15929 0.321653 GCAGAACCGATCAACCCACT 60.322 55.000 0.00 0.00 0.00 4.00
9839 15930 1.305930 GGCAGAACCGATCAACCCAC 61.306 60.000 0.00 0.00 0.00 4.61
9840 15931 1.002624 GGCAGAACCGATCAACCCA 60.003 57.895 0.00 0.00 0.00 4.51
9841 15932 1.749258 GGGCAGAACCGATCAACCC 60.749 63.158 0.00 0.00 40.62 4.11
9842 15933 0.322546 AAGGGCAGAACCGATCAACC 60.323 55.000 0.00 0.00 40.62 3.77
9843 15934 0.804989 CAAGGGCAGAACCGATCAAC 59.195 55.000 0.00 0.00 40.62 3.18
9844 15935 0.400213 ACAAGGGCAGAACCGATCAA 59.600 50.000 0.00 0.00 40.62 2.57
9845 15936 0.321564 CACAAGGGCAGAACCGATCA 60.322 55.000 0.00 0.00 40.62 2.92
9846 15937 1.648467 GCACAAGGGCAGAACCGATC 61.648 60.000 0.00 0.00 40.62 3.69
9847 15938 1.675641 GCACAAGGGCAGAACCGAT 60.676 57.895 0.00 0.00 40.62 4.18
9848 15939 2.281484 GCACAAGGGCAGAACCGA 60.281 61.111 0.00 0.00 40.62 4.69
9849 15940 2.281761 AGCACAAGGGCAGAACCG 60.282 61.111 0.00 0.00 40.62 4.44
9850 15941 2.328099 CGAGCACAAGGGCAGAACC 61.328 63.158 0.00 0.00 35.83 3.62
9851 15942 2.970974 GCGAGCACAAGGGCAGAAC 61.971 63.158 0.00 0.00 35.83 3.01
9852 15943 2.669569 GCGAGCACAAGGGCAGAA 60.670 61.111 0.00 0.00 35.83 3.02
9853 15944 2.753009 AATGCGAGCACAAGGGCAGA 62.753 55.000 0.00 0.00 39.00 4.26
9854 15945 1.870055 AAATGCGAGCACAAGGGCAG 61.870 55.000 0.00 0.00 39.00 4.85
9855 15946 0.607762 TAAATGCGAGCACAAGGGCA 60.608 50.000 0.00 0.00 40.06 5.36
9856 15947 0.740737 ATAAATGCGAGCACAAGGGC 59.259 50.000 0.00 0.00 0.00 5.19
9857 15948 1.334869 GGATAAATGCGAGCACAAGGG 59.665 52.381 0.00 0.00 0.00 3.95
9858 15949 2.292267 AGGATAAATGCGAGCACAAGG 58.708 47.619 0.00 0.00 0.00 3.61
9859 15950 4.371786 TCTAGGATAAATGCGAGCACAAG 58.628 43.478 0.00 0.00 0.00 3.16
9860 15951 4.400529 TCTAGGATAAATGCGAGCACAA 57.599 40.909 0.00 0.00 0.00 3.33
9861 15952 4.607293 ATCTAGGATAAATGCGAGCACA 57.393 40.909 0.00 0.00 0.00 4.57
9862 15953 5.931441 AAATCTAGGATAAATGCGAGCAC 57.069 39.130 0.00 0.00 0.00 4.40
9863 15954 8.621532 AAATAAATCTAGGATAAATGCGAGCA 57.378 30.769 0.00 0.00 0.00 4.26
9875 15966 9.063615 GCCGGAAATCTTAAAATAAATCTAGGA 57.936 33.333 5.05 0.00 0.00 2.94
9876 15967 8.015658 CGCCGGAAATCTTAAAATAAATCTAGG 58.984 37.037 5.05 0.00 0.00 3.02
9877 15968 8.934973 CGCCGGAAATCTTAAAATAAATCTAG 57.065 34.615 5.05 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.