Multiple sequence alignment - TraesCS6B01G117500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G117500 chr6B 100.000 2585 0 0 1 2585 107818678 107816094 0.000000e+00 4774
1 TraesCS6B01G117500 chr6B 90.235 2212 180 16 404 2584 508826836 508824630 0.000000e+00 2856
2 TraesCS6B01G117500 chr6B 91.582 297 18 6 1 294 45571115 45571407 1.110000e-108 403
3 TraesCS6B01G117500 chr1D 92.016 2192 147 11 400 2583 250223363 250225534 0.000000e+00 3053
4 TraesCS6B01G117500 chr1D 91.050 2190 141 29 399 2584 424634901 424637039 0.000000e+00 2907
5 TraesCS6B01G117500 chr4D 91.356 2198 154 18 402 2584 84467728 84465552 0.000000e+00 2974
6 TraesCS6B01G117500 chr2B 91.158 2194 167 15 403 2581 42139606 42141787 0.000000e+00 2952
7 TraesCS6B01G117500 chr2B 91.837 294 21 3 1 293 66358003 66357712 8.610000e-110 407
8 TraesCS6B01G117500 chr2B 91.525 295 23 2 1 294 473339773 473339480 3.100000e-109 405
9 TraesCS6B01G117500 chr7D 90.893 2196 166 20 400 2584 175933385 175931213 0.000000e+00 2916
10 TraesCS6B01G117500 chr2D 90.632 2199 174 20 401 2585 498273317 498275497 0.000000e+00 2891
11 TraesCS6B01G117500 chr2D 91.715 1895 143 6 451 2337 596268284 596266396 0.000000e+00 2617
12 TraesCS6B01G117500 chr2D 90.244 943 75 6 451 1377 596306239 596305298 0.000000e+00 1216
13 TraesCS6B01G117500 chr3D 91.598 1952 129 11 644 2584 540374905 540376832 0.000000e+00 2663
14 TraesCS6B01G117500 chr3D 90.755 1947 165 9 399 2336 45865464 45867404 0.000000e+00 2584
15 TraesCS6B01G117500 chr5D 89.000 2209 144 31 401 2584 114593362 114595496 0.000000e+00 2641
16 TraesCS6B01G117500 chr5D 86.267 517 61 7 403 911 563696692 563697206 1.050000e-153 553
17 TraesCS6B01G117500 chr3B 88.385 1102 108 5 404 1497 576067704 576068793 0.000000e+00 1308
18 TraesCS6B01G117500 chr3B 92.256 297 17 5 1 294 420878861 420878568 1.430000e-112 416
19 TraesCS6B01G117500 chr7B 91.864 295 22 2 1 294 373775704 373775997 6.660000e-111 411
20 TraesCS6B01G117500 chr1B 91.919 297 18 5 1 294 647038592 647038299 6.660000e-111 411
21 TraesCS6B01G117500 chr1B 91.030 301 25 2 1 300 467635321 467635620 3.100000e-109 405
22 TraesCS6B01G117500 chr1B 90.523 306 21 7 1 303 461249757 461249457 5.180000e-107 398
23 TraesCS6B01G117500 chr4A 91.837 294 17 6 1 291 729900042 729900331 1.110000e-108 403
24 TraesCS6B01G117500 chrUn 92.857 84 6 0 320 403 98218659 98218576 3.490000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G117500 chr6B 107816094 107818678 2584 True 4774 4774 100.000 1 2585 1 chr6B.!!$R1 2584
1 TraesCS6B01G117500 chr6B 508824630 508826836 2206 True 2856 2856 90.235 404 2584 1 chr6B.!!$R2 2180
2 TraesCS6B01G117500 chr1D 250223363 250225534 2171 False 3053 3053 92.016 400 2583 1 chr1D.!!$F1 2183
3 TraesCS6B01G117500 chr1D 424634901 424637039 2138 False 2907 2907 91.050 399 2584 1 chr1D.!!$F2 2185
4 TraesCS6B01G117500 chr4D 84465552 84467728 2176 True 2974 2974 91.356 402 2584 1 chr4D.!!$R1 2182
5 TraesCS6B01G117500 chr2B 42139606 42141787 2181 False 2952 2952 91.158 403 2581 1 chr2B.!!$F1 2178
6 TraesCS6B01G117500 chr7D 175931213 175933385 2172 True 2916 2916 90.893 400 2584 1 chr7D.!!$R1 2184
7 TraesCS6B01G117500 chr2D 498273317 498275497 2180 False 2891 2891 90.632 401 2585 1 chr2D.!!$F1 2184
8 TraesCS6B01G117500 chr2D 596266396 596268284 1888 True 2617 2617 91.715 451 2337 1 chr2D.!!$R1 1886
9 TraesCS6B01G117500 chr2D 596305298 596306239 941 True 1216 1216 90.244 451 1377 1 chr2D.!!$R2 926
10 TraesCS6B01G117500 chr3D 540374905 540376832 1927 False 2663 2663 91.598 644 2584 1 chr3D.!!$F2 1940
11 TraesCS6B01G117500 chr3D 45865464 45867404 1940 False 2584 2584 90.755 399 2336 1 chr3D.!!$F1 1937
12 TraesCS6B01G117500 chr5D 114593362 114595496 2134 False 2641 2641 89.000 401 2584 1 chr5D.!!$F1 2183
13 TraesCS6B01G117500 chr5D 563696692 563697206 514 False 553 553 86.267 403 911 1 chr5D.!!$F2 508
14 TraesCS6B01G117500 chr3B 576067704 576068793 1089 False 1308 1308 88.385 404 1497 1 chr3B.!!$F1 1093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 378 0.03254 GGTGGAGCCTTTTGCAAGTG 59.967 55.0 0.0 0.0 44.83 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2340 0.031721 GCTTTTGCTTCTGCTGCTGT 59.968 50.0 0.0 0.0 43.35 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.806203 ATATGAATGATTGTTGTATTGTGTTGG 57.194 29.630 0.00 0.00 0.00 3.77
47 48 7.048629 TGAATGATTGTTGTATTGTGTTGGT 57.951 32.000 0.00 0.00 0.00 3.67
48 49 8.171164 TGAATGATTGTTGTATTGTGTTGGTA 57.829 30.769 0.00 0.00 0.00 3.25
49 50 8.801299 TGAATGATTGTTGTATTGTGTTGGTAT 58.199 29.630 0.00 0.00 0.00 2.73
50 51 9.638239 GAATGATTGTTGTATTGTGTTGGTATT 57.362 29.630 0.00 0.00 0.00 1.89
51 52 8.984891 ATGATTGTTGTATTGTGTTGGTATTG 57.015 30.769 0.00 0.00 0.00 1.90
52 53 8.171164 TGATTGTTGTATTGTGTTGGTATTGA 57.829 30.769 0.00 0.00 0.00 2.57
53 54 8.801299 TGATTGTTGTATTGTGTTGGTATTGAT 58.199 29.630 0.00 0.00 0.00 2.57
60 61 9.249053 TGTATTGTGTTGGTATTGATAATTGGT 57.751 29.630 0.00 0.00 0.00 3.67
61 62 9.515020 GTATTGTGTTGGTATTGATAATTGGTG 57.485 33.333 0.00 0.00 0.00 4.17
62 63 7.531857 TTGTGTTGGTATTGATAATTGGTGT 57.468 32.000 0.00 0.00 0.00 4.16
63 64 6.918626 TGTGTTGGTATTGATAATTGGTGTG 58.081 36.000 0.00 0.00 0.00 3.82
64 65 6.071672 TGTGTTGGTATTGATAATTGGTGTGG 60.072 38.462 0.00 0.00 0.00 4.17
65 66 6.013379 TGTTGGTATTGATAATTGGTGTGGT 58.987 36.000 0.00 0.00 0.00 4.16
66 67 7.121463 GTGTTGGTATTGATAATTGGTGTGGTA 59.879 37.037 0.00 0.00 0.00 3.25
67 68 7.836685 TGTTGGTATTGATAATTGGTGTGGTAT 59.163 33.333 0.00 0.00 0.00 2.73
68 69 8.691797 GTTGGTATTGATAATTGGTGTGGTATT 58.308 33.333 0.00 0.00 0.00 1.89
69 70 8.231692 TGGTATTGATAATTGGTGTGGTATTG 57.768 34.615 0.00 0.00 0.00 1.90
70 71 8.055790 TGGTATTGATAATTGGTGTGGTATTGA 58.944 33.333 0.00 0.00 0.00 2.57
71 72 9.077885 GGTATTGATAATTGGTGTGGTATTGAT 57.922 33.333 0.00 0.00 0.00 2.57
80 81 6.552859 TGGTGTGGTATTGATATATTTGCG 57.447 37.500 0.00 0.00 0.00 4.85
81 82 5.471797 TGGTGTGGTATTGATATATTTGCGG 59.528 40.000 0.00 0.00 0.00 5.69
82 83 5.703592 GGTGTGGTATTGATATATTTGCGGA 59.296 40.000 0.00 0.00 0.00 5.54
83 84 6.348213 GGTGTGGTATTGATATATTTGCGGAC 60.348 42.308 0.00 0.00 0.00 4.79
84 85 5.703592 TGTGGTATTGATATATTTGCGGACC 59.296 40.000 0.00 0.00 0.00 4.46
85 86 4.932799 TGGTATTGATATATTTGCGGACCG 59.067 41.667 10.29 10.29 0.00 4.79
86 87 4.331717 GGTATTGATATATTTGCGGACCGG 59.668 45.833 17.22 0.00 0.00 5.28
87 88 3.478857 TTGATATATTTGCGGACCGGT 57.521 42.857 17.22 6.92 0.00 5.28
88 89 2.761559 TGATATATTTGCGGACCGGTG 58.238 47.619 14.63 0.00 0.00 4.94
89 90 2.073816 GATATATTTGCGGACCGGTGG 58.926 52.381 14.63 4.46 0.00 4.61
90 91 0.107081 TATATTTGCGGACCGGTGGG 59.893 55.000 14.63 4.00 40.11 4.61
91 92 1.628238 ATATTTGCGGACCGGTGGGA 61.628 55.000 14.63 0.85 36.97 4.37
92 93 1.628238 TATTTGCGGACCGGTGGGAT 61.628 55.000 14.63 0.00 36.97 3.85
93 94 3.786201 TATTTGCGGACCGGTGGGATG 62.786 57.143 14.63 0.00 36.97 3.51
95 96 4.530857 GCGGACCGGTGGGATGAG 62.531 72.222 14.63 0.00 36.97 2.90
96 97 3.849951 CGGACCGGTGGGATGAGG 61.850 72.222 14.63 0.00 36.97 3.86
97 98 3.480133 GGACCGGTGGGATGAGGG 61.480 72.222 14.63 0.00 36.97 4.30
98 99 2.365105 GACCGGTGGGATGAGGGA 60.365 66.667 14.63 0.00 36.97 4.20
99 100 1.766461 GACCGGTGGGATGAGGGAT 60.766 63.158 14.63 0.00 36.97 3.85
100 101 2.044806 GACCGGTGGGATGAGGGATG 62.045 65.000 14.63 0.00 36.97 3.51
101 102 2.111878 CGGTGGGATGAGGGATGC 59.888 66.667 0.00 0.00 0.00 3.91
102 103 2.745308 CGGTGGGATGAGGGATGCA 61.745 63.158 0.00 0.00 0.00 3.96
103 104 1.150081 GGTGGGATGAGGGATGCAG 59.850 63.158 0.00 0.00 0.00 4.41
104 105 1.527844 GTGGGATGAGGGATGCAGC 60.528 63.158 0.00 0.00 0.00 5.25
105 106 2.281345 GGGATGAGGGATGCAGCG 60.281 66.667 0.00 0.00 0.00 5.18
106 107 2.281345 GGATGAGGGATGCAGCGG 60.281 66.667 0.00 0.00 0.00 5.52
107 108 2.281345 GATGAGGGATGCAGCGGG 60.281 66.667 0.00 0.00 0.00 6.13
108 109 4.575973 ATGAGGGATGCAGCGGGC 62.576 66.667 0.00 0.00 45.13 6.13
126 127 4.704833 GCAAGAGCAGACCCCGCA 62.705 66.667 0.00 0.00 41.58 5.69
127 128 2.032528 CAAGAGCAGACCCCGCAA 59.967 61.111 0.00 0.00 0.00 4.85
128 129 1.600636 CAAGAGCAGACCCCGCAAA 60.601 57.895 0.00 0.00 0.00 3.68
129 130 1.302832 AAGAGCAGACCCCGCAAAG 60.303 57.895 0.00 0.00 0.00 2.77
130 131 3.435186 GAGCAGACCCCGCAAAGC 61.435 66.667 0.00 0.00 0.00 3.51
133 134 4.697756 CAGACCCCGCAAAGCCGA 62.698 66.667 0.00 0.00 0.00 5.54
134 135 4.699522 AGACCCCGCAAAGCCGAC 62.700 66.667 0.00 0.00 0.00 4.79
139 140 4.745751 CCGCAAAGCCGACCCGTA 62.746 66.667 0.00 0.00 0.00 4.02
140 141 2.739287 CGCAAAGCCGACCCGTAA 60.739 61.111 0.00 0.00 0.00 3.18
141 142 2.319096 CGCAAAGCCGACCCGTAAA 61.319 57.895 0.00 0.00 0.00 2.01
142 143 1.843734 CGCAAAGCCGACCCGTAAAA 61.844 55.000 0.00 0.00 0.00 1.52
143 144 0.311477 GCAAAGCCGACCCGTAAAAA 59.689 50.000 0.00 0.00 0.00 1.94
144 145 1.664874 GCAAAGCCGACCCGTAAAAAG 60.665 52.381 0.00 0.00 0.00 2.27
145 146 1.605232 CAAAGCCGACCCGTAAAAAGT 59.395 47.619 0.00 0.00 0.00 2.66
146 147 2.807392 CAAAGCCGACCCGTAAAAAGTA 59.193 45.455 0.00 0.00 0.00 2.24
147 148 3.339253 AAGCCGACCCGTAAAAAGTAT 57.661 42.857 0.00 0.00 0.00 2.12
148 149 4.470334 AAGCCGACCCGTAAAAAGTATA 57.530 40.909 0.00 0.00 0.00 1.47
149 150 4.677673 AGCCGACCCGTAAAAAGTATAT 57.322 40.909 0.00 0.00 0.00 0.86
150 151 5.027293 AGCCGACCCGTAAAAAGTATATT 57.973 39.130 0.00 0.00 0.00 1.28
151 152 5.052481 AGCCGACCCGTAAAAAGTATATTC 58.948 41.667 0.00 0.00 0.00 1.75
152 153 4.212004 GCCGACCCGTAAAAAGTATATTCC 59.788 45.833 0.00 0.00 0.00 3.01
153 154 4.445385 CCGACCCGTAAAAAGTATATTCCG 59.555 45.833 0.00 0.00 0.00 4.30
154 155 5.043248 CGACCCGTAAAAAGTATATTCCGT 58.957 41.667 0.00 0.00 0.00 4.69
155 156 5.051508 CGACCCGTAAAAAGTATATTCCGTG 60.052 44.000 0.00 0.00 0.00 4.94
156 157 5.976458 ACCCGTAAAAAGTATATTCCGTGA 58.024 37.500 0.00 0.00 0.00 4.35
157 158 6.405538 ACCCGTAAAAAGTATATTCCGTGAA 58.594 36.000 0.00 0.00 0.00 3.18
158 159 7.049754 ACCCGTAAAAAGTATATTCCGTGAAT 58.950 34.615 4.82 4.82 36.20 2.57
159 160 8.203485 ACCCGTAAAAAGTATATTCCGTGAATA 58.797 33.333 8.25 8.25 38.61 1.75
160 161 9.211485 CCCGTAAAAAGTATATTCCGTGAATAT 57.789 33.333 17.57 17.57 44.35 1.28
173 174 5.786311 TCCGTGAATATCCTTTTATACGGG 58.214 41.667 11.85 0.00 46.96 5.28
174 175 5.305128 TCCGTGAATATCCTTTTATACGGGT 59.695 40.000 11.85 0.00 46.96 5.28
175 176 5.636543 CCGTGAATATCCTTTTATACGGGTC 59.363 44.000 0.00 0.00 44.26 4.46
176 177 5.636543 CGTGAATATCCTTTTATACGGGTCC 59.363 44.000 0.00 0.00 0.00 4.46
177 178 6.527423 GTGAATATCCTTTTATACGGGTCCA 58.473 40.000 0.00 0.00 0.00 4.02
178 179 7.166167 GTGAATATCCTTTTATACGGGTCCAT 58.834 38.462 0.00 0.00 0.00 3.41
179 180 7.664318 GTGAATATCCTTTTATACGGGTCCATT 59.336 37.037 0.00 0.00 0.00 3.16
180 181 8.221944 TGAATATCCTTTTATACGGGTCCATTT 58.778 33.333 0.00 0.00 0.00 2.32
181 182 9.074576 GAATATCCTTTTATACGGGTCCATTTT 57.925 33.333 0.00 0.00 0.00 1.82
182 183 6.709018 ATCCTTTTATACGGGTCCATTTTG 57.291 37.500 0.00 0.00 0.00 2.44
183 184 4.951094 TCCTTTTATACGGGTCCATTTTGG 59.049 41.667 0.00 0.00 39.43 3.28
184 185 4.098807 CCTTTTATACGGGTCCATTTTGGG 59.901 45.833 0.00 0.00 38.32 4.12
185 186 3.300239 TTATACGGGTCCATTTTGGGG 57.700 47.619 0.00 0.00 38.32 4.96
186 187 0.260523 ATACGGGTCCATTTTGGGGG 59.739 55.000 0.00 0.00 38.32 5.40
200 201 4.256180 GGGGGTCTGCCTATGCGG 62.256 72.222 0.00 0.00 45.75 5.69
225 226 3.864686 CGTCGGCCCGCAAAGATG 61.865 66.667 0.00 0.00 0.00 2.90
226 227 2.746277 GTCGGCCCGCAAAGATGT 60.746 61.111 0.00 0.00 0.00 3.06
227 228 2.033448 TCGGCCCGCAAAGATGTT 59.967 55.556 0.00 0.00 0.00 2.71
228 229 1.602323 TCGGCCCGCAAAGATGTTT 60.602 52.632 0.00 0.00 0.00 2.83
229 230 1.175983 TCGGCCCGCAAAGATGTTTT 61.176 50.000 0.00 0.00 0.00 2.43
230 231 0.319469 CGGCCCGCAAAGATGTTTTT 60.319 50.000 0.00 0.00 0.00 1.94
231 232 1.428448 GGCCCGCAAAGATGTTTTTC 58.572 50.000 0.00 0.00 0.00 2.29
232 233 1.428448 GCCCGCAAAGATGTTTTTCC 58.572 50.000 0.00 0.00 0.00 3.13
233 234 1.270041 GCCCGCAAAGATGTTTTTCCA 60.270 47.619 0.00 0.00 0.00 3.53
234 235 2.403259 CCCGCAAAGATGTTTTTCCAC 58.597 47.619 0.00 0.00 0.00 4.02
235 236 2.050691 CCGCAAAGATGTTTTTCCACG 58.949 47.619 0.00 0.00 0.00 4.94
236 237 2.287308 CCGCAAAGATGTTTTTCCACGA 60.287 45.455 0.00 0.00 0.00 4.35
237 238 3.367607 CGCAAAGATGTTTTTCCACGAA 58.632 40.909 0.00 0.00 0.00 3.85
238 239 3.179599 CGCAAAGATGTTTTTCCACGAAC 59.820 43.478 0.00 0.00 0.00 3.95
239 240 4.359706 GCAAAGATGTTTTTCCACGAACT 58.640 39.130 0.00 0.00 0.00 3.01
240 241 4.207019 GCAAAGATGTTTTTCCACGAACTG 59.793 41.667 0.00 0.00 0.00 3.16
241 242 3.626028 AGATGTTTTTCCACGAACTGC 57.374 42.857 0.00 0.00 0.00 4.40
242 243 2.948979 AGATGTTTTTCCACGAACTGCA 59.051 40.909 0.00 0.00 0.00 4.41
243 244 3.380004 AGATGTTTTTCCACGAACTGCAA 59.620 39.130 0.00 0.00 0.00 4.08
244 245 3.577649 TGTTTTTCCACGAACTGCAAA 57.422 38.095 0.00 0.00 0.00 3.68
245 246 3.246619 TGTTTTTCCACGAACTGCAAAC 58.753 40.909 0.00 0.00 0.00 2.93
246 247 2.181426 TTTTCCACGAACTGCAAACG 57.819 45.000 0.00 5.53 0.00 3.60
247 248 0.248296 TTTCCACGAACTGCAAACGC 60.248 50.000 6.73 0.00 0.00 4.84
248 249 2.368131 TTCCACGAACTGCAAACGCG 62.368 55.000 3.53 3.53 0.00 6.01
249 250 2.323105 CACGAACTGCAAACGCGT 59.677 55.556 5.58 5.58 35.33 6.01
250 251 1.297304 CACGAACTGCAAACGCGTT 60.297 52.632 20.79 20.79 32.27 4.84
251 252 0.859788 CACGAACTGCAAACGCGTTT 60.860 50.000 30.36 30.36 32.27 3.60
252 253 0.179184 ACGAACTGCAAACGCGTTTT 60.179 45.000 33.05 19.44 0.00 2.43
253 254 0.223513 CGAACTGCAAACGCGTTTTG 59.776 50.000 33.05 26.38 46.57 2.44
280 281 3.161450 GGGATGCGGGGTCTGCTA 61.161 66.667 0.30 0.00 0.00 3.49
281 282 2.423446 GGATGCGGGGTCTGCTAG 59.577 66.667 0.30 0.00 0.00 3.42
282 283 2.134287 GGATGCGGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
283 284 1.365633 GATGCGGGGTCTGCTAGAG 59.634 63.158 0.00 0.00 0.00 2.43
284 285 1.381872 ATGCGGGGTCTGCTAGAGT 60.382 57.895 0.00 0.00 0.00 3.24
285 286 0.978146 ATGCGGGGTCTGCTAGAGTT 60.978 55.000 0.00 0.00 0.00 3.01
286 287 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
287 288 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
288 289 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
289 290 0.176910 GGGGTCTGCTAGAGTTGCTC 59.823 60.000 0.00 0.00 0.00 4.26
290 291 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
291 292 2.379972 GGGTCTGCTAGAGTTGCTCTA 58.620 52.381 0.00 5.84 41.50 2.43
292 293 2.761208 GGGTCTGCTAGAGTTGCTCTAA 59.239 50.000 7.22 0.00 41.74 2.10
293 294 3.181480 GGGTCTGCTAGAGTTGCTCTAAG 60.181 52.174 7.22 3.73 41.74 2.18
294 295 3.697045 GGTCTGCTAGAGTTGCTCTAAGA 59.303 47.826 7.22 5.68 41.74 2.10
295 296 4.439563 GGTCTGCTAGAGTTGCTCTAAGAC 60.440 50.000 19.62 19.62 43.30 3.01
296 297 4.398044 GTCTGCTAGAGTTGCTCTAAGACT 59.602 45.833 20.09 0.00 42.13 3.24
297 298 5.587043 GTCTGCTAGAGTTGCTCTAAGACTA 59.413 44.000 20.09 0.00 42.13 2.59
298 299 5.587043 TCTGCTAGAGTTGCTCTAAGACTAC 59.413 44.000 7.22 0.00 41.74 2.73
299 300 5.502079 TGCTAGAGTTGCTCTAAGACTACT 58.498 41.667 7.22 0.00 41.74 2.57
300 301 5.587043 TGCTAGAGTTGCTCTAAGACTACTC 59.413 44.000 7.22 0.00 41.74 2.59
301 302 5.587043 GCTAGAGTTGCTCTAAGACTACTCA 59.413 44.000 7.22 0.00 41.74 3.41
302 303 6.262273 GCTAGAGTTGCTCTAAGACTACTCAT 59.738 42.308 7.22 0.00 41.74 2.90
303 304 7.201785 GCTAGAGTTGCTCTAAGACTACTCATT 60.202 40.741 7.22 0.00 41.74 2.57
304 305 7.475137 AGAGTTGCTCTAAGACTACTCATTT 57.525 36.000 0.00 0.00 39.28 2.32
305 306 7.319646 AGAGTTGCTCTAAGACTACTCATTTG 58.680 38.462 0.00 0.00 39.28 2.32
306 307 7.177568 AGAGTTGCTCTAAGACTACTCATTTGA 59.822 37.037 0.00 0.00 39.28 2.69
307 308 7.671302 AGTTGCTCTAAGACTACTCATTTGAA 58.329 34.615 0.00 0.00 0.00 2.69
308 309 7.816995 AGTTGCTCTAAGACTACTCATTTGAAG 59.183 37.037 0.00 0.00 0.00 3.02
309 310 7.233389 TGCTCTAAGACTACTCATTTGAAGT 57.767 36.000 0.00 0.00 0.00 3.01
310 311 7.093354 TGCTCTAAGACTACTCATTTGAAGTG 58.907 38.462 0.00 0.00 0.00 3.16
311 312 6.533367 GCTCTAAGACTACTCATTTGAAGTGG 59.467 42.308 0.00 0.00 0.00 4.00
312 313 6.936279 TCTAAGACTACTCATTTGAAGTGGG 58.064 40.000 0.00 0.00 0.00 4.61
313 314 5.825593 AAGACTACTCATTTGAAGTGGGA 57.174 39.130 0.00 0.00 0.00 4.37
314 315 5.413309 AGACTACTCATTTGAAGTGGGAG 57.587 43.478 0.00 0.00 0.00 4.30
315 316 4.841246 AGACTACTCATTTGAAGTGGGAGT 59.159 41.667 0.00 0.00 41.37 3.85
316 317 4.899502 ACTACTCATTTGAAGTGGGAGTG 58.100 43.478 0.00 0.00 39.07 3.51
317 318 3.146104 ACTCATTTGAAGTGGGAGTGG 57.854 47.619 0.00 0.00 37.43 4.00
318 319 2.224867 ACTCATTTGAAGTGGGAGTGGG 60.225 50.000 0.00 0.00 37.43 4.61
319 320 2.040278 CTCATTTGAAGTGGGAGTGGGA 59.960 50.000 0.00 0.00 0.00 4.37
320 321 2.162681 CATTTGAAGTGGGAGTGGGAC 58.837 52.381 0.00 0.00 0.00 4.46
321 322 1.217916 TTTGAAGTGGGAGTGGGACA 58.782 50.000 0.00 0.00 0.00 4.02
322 323 0.764890 TTGAAGTGGGAGTGGGACAG 59.235 55.000 0.00 0.00 41.80 3.51
323 324 0.105194 TGAAGTGGGAGTGGGACAGA 60.105 55.000 0.00 0.00 41.80 3.41
324 325 0.610687 GAAGTGGGAGTGGGACAGAG 59.389 60.000 0.00 0.00 41.80 3.35
325 326 0.838122 AAGTGGGAGTGGGACAGAGG 60.838 60.000 0.00 0.00 41.80 3.69
326 327 1.536662 GTGGGAGTGGGACAGAGGT 60.537 63.158 0.00 0.00 41.80 3.85
327 328 1.128188 GTGGGAGTGGGACAGAGGTT 61.128 60.000 0.00 0.00 41.80 3.50
328 329 1.127567 TGGGAGTGGGACAGAGGTTG 61.128 60.000 0.00 0.00 41.80 3.77
329 330 1.003233 GGAGTGGGACAGAGGTTGC 60.003 63.158 0.00 0.00 41.80 4.17
330 331 1.484444 GGAGTGGGACAGAGGTTGCT 61.484 60.000 0.00 0.00 41.80 3.91
331 332 0.036858 GAGTGGGACAGAGGTTGCTC 60.037 60.000 0.00 0.00 41.80 4.26
332 333 1.374758 GTGGGACAGAGGTTGCTCG 60.375 63.158 0.00 0.00 41.80 5.03
333 334 2.266055 GGGACAGAGGTTGCTCGG 59.734 66.667 0.00 0.00 0.00 4.63
334 335 2.266055 GGACAGAGGTTGCTCGGG 59.734 66.667 0.00 0.00 0.00 5.14
335 336 2.266055 GACAGAGGTTGCTCGGGG 59.734 66.667 0.00 0.00 0.00 5.73
336 337 2.203788 ACAGAGGTTGCTCGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
337 338 1.827399 GACAGAGGTTGCTCGGGGAA 61.827 60.000 0.00 0.00 0.00 3.97
338 339 1.078848 CAGAGGTTGCTCGGGGAAG 60.079 63.158 0.00 0.00 0.00 3.46
339 340 1.229209 AGAGGTTGCTCGGGGAAGA 60.229 57.895 0.00 0.00 0.00 2.87
340 341 0.836400 AGAGGTTGCTCGGGGAAGAA 60.836 55.000 0.00 0.00 0.00 2.52
341 342 0.673956 GAGGTTGCTCGGGGAAGAAC 60.674 60.000 0.00 0.00 0.00 3.01
342 343 2.033194 GGTTGCTCGGGGAAGAACG 61.033 63.158 0.00 0.00 0.00 3.95
343 344 2.033194 GTTGCTCGGGGAAGAACGG 61.033 63.158 0.00 0.00 0.00 4.44
344 345 3.894547 TTGCTCGGGGAAGAACGGC 62.895 63.158 0.00 0.00 0.00 5.68
346 347 4.814294 CTCGGGGAAGAACGGCCG 62.814 72.222 26.86 26.86 0.00 6.13
372 373 3.520187 CATTGGTGGAGCCTTTTGC 57.480 52.632 0.00 0.00 41.71 3.68
373 374 0.680618 CATTGGTGGAGCCTTTTGCA 59.319 50.000 0.00 0.00 44.83 4.08
374 375 1.070445 CATTGGTGGAGCCTTTTGCAA 59.930 47.619 0.00 0.00 44.83 4.08
375 376 0.752054 TTGGTGGAGCCTTTTGCAAG 59.248 50.000 0.00 0.00 44.83 4.01
376 377 0.396974 TGGTGGAGCCTTTTGCAAGT 60.397 50.000 0.00 0.00 44.83 3.16
377 378 0.032540 GGTGGAGCCTTTTGCAAGTG 59.967 55.000 0.00 0.00 44.83 3.16
378 379 0.032540 GTGGAGCCTTTTGCAAGTGG 59.967 55.000 13.45 13.45 44.83 4.00
379 380 0.396974 TGGAGCCTTTTGCAAGTGGT 60.397 50.000 17.36 8.51 44.83 4.16
380 381 1.133637 TGGAGCCTTTTGCAAGTGGTA 60.134 47.619 17.36 0.00 44.83 3.25
381 382 1.269723 GGAGCCTTTTGCAAGTGGTAC 59.730 52.381 17.36 12.51 44.83 3.34
382 383 1.269723 GAGCCTTTTGCAAGTGGTACC 59.730 52.381 17.36 4.43 44.83 3.34
383 384 1.036707 GCCTTTTGCAAGTGGTACCA 58.963 50.000 11.60 11.60 40.77 3.25
384 385 1.000274 GCCTTTTGCAAGTGGTACCAG 60.000 52.381 16.93 4.87 40.77 4.00
385 386 2.582052 CCTTTTGCAAGTGGTACCAGA 58.418 47.619 16.93 0.00 0.00 3.86
386 387 3.157087 CCTTTTGCAAGTGGTACCAGAT 58.843 45.455 16.93 3.95 0.00 2.90
387 388 3.573967 CCTTTTGCAAGTGGTACCAGATT 59.426 43.478 16.93 10.78 0.00 2.40
388 389 4.549458 CTTTTGCAAGTGGTACCAGATTG 58.451 43.478 25.59 25.59 0.00 2.67
389 390 1.533625 TGCAAGTGGTACCAGATTGC 58.466 50.000 36.24 36.24 43.93 3.56
390 391 1.533625 GCAAGTGGTACCAGATTGCA 58.466 50.000 37.04 10.14 43.51 4.08
391 392 2.094675 GCAAGTGGTACCAGATTGCAT 58.905 47.619 37.04 13.56 43.51 3.96
392 393 2.159338 GCAAGTGGTACCAGATTGCATG 60.159 50.000 37.04 22.43 43.51 4.06
393 394 1.755179 AGTGGTACCAGATTGCATGC 58.245 50.000 16.93 11.82 0.00 4.06
394 395 1.004628 AGTGGTACCAGATTGCATGCA 59.995 47.619 18.46 18.46 0.00 3.96
395 396 1.402968 GTGGTACCAGATTGCATGCAG 59.597 52.381 21.50 11.44 0.00 4.41
396 397 1.281577 TGGTACCAGATTGCATGCAGA 59.718 47.619 21.50 12.42 0.00 4.26
397 398 2.092267 TGGTACCAGATTGCATGCAGAT 60.092 45.455 21.50 16.56 0.00 2.90
398 399 2.551459 GGTACCAGATTGCATGCAGATC 59.449 50.000 21.50 22.98 0.00 2.75
474 475 3.549730 GGCCTGTTTGGTTGCCTT 58.450 55.556 0.00 0.00 40.77 4.35
480 481 2.192624 CTGTTTGGTTGCCTTGTTTCG 58.807 47.619 0.00 0.00 0.00 3.46
489 490 1.734388 GCCTTGTTTCGCTGTTGGGT 61.734 55.000 0.00 0.00 0.00 4.51
498 499 1.672356 GCTGTTGGGTCTGCATCGT 60.672 57.895 0.00 0.00 33.55 3.73
539 540 2.373169 AGAGTCTGGCTCATTGGAAACA 59.627 45.455 12.41 0.00 46.47 2.83
640 641 1.351017 GATGGCGGGAGATGGGAAATA 59.649 52.381 0.00 0.00 0.00 1.40
677 681 0.548510 GCCAAATCTAGCCTCACCCT 59.451 55.000 0.00 0.00 0.00 4.34
705 710 0.107456 CTCGCTCACCCATAGCCAAT 59.893 55.000 0.00 0.00 36.60 3.16
706 711 0.546122 TCGCTCACCCATAGCCAATT 59.454 50.000 0.00 0.00 36.60 2.32
707 712 1.064758 TCGCTCACCCATAGCCAATTT 60.065 47.619 0.00 0.00 36.60 1.82
708 713 1.334869 CGCTCACCCATAGCCAATTTC 59.665 52.381 0.00 0.00 36.60 2.17
709 714 2.659428 GCTCACCCATAGCCAATTTCT 58.341 47.619 0.00 0.00 33.73 2.52
710 715 3.026694 GCTCACCCATAGCCAATTTCTT 58.973 45.455 0.00 0.00 33.73 2.52
711 716 3.067320 GCTCACCCATAGCCAATTTCTTC 59.933 47.826 0.00 0.00 33.73 2.87
712 717 3.631250 TCACCCATAGCCAATTTCTTCC 58.369 45.455 0.00 0.00 0.00 3.46
713 718 3.011144 TCACCCATAGCCAATTTCTTCCA 59.989 43.478 0.00 0.00 0.00 3.53
775 795 1.066422 CGATTCTGCGCTAGAGGCA 59.934 57.895 9.73 8.39 41.91 4.75
834 868 2.436109 GCTCCCCTTGCTGTTGGA 59.564 61.111 0.00 0.00 0.00 3.53
855 889 1.366366 CCGTCTGGTCGACCTTGTT 59.634 57.895 33.39 0.00 39.56 2.83
889 924 1.051812 CCCTATGCCATCCTCGTCTT 58.948 55.000 0.00 0.00 0.00 3.01
980 1017 7.611213 AAGATCGATTTTCCACTAAACGAAT 57.389 32.000 0.00 0.00 30.51 3.34
985 1022 5.061808 CGATTTTCCACTAAACGAATCGTCT 59.938 40.000 9.32 0.00 39.99 4.18
1058 1095 4.019860 AGCACTGATAAGTGTGATTCAGGT 60.020 41.667 12.02 0.00 39.89 4.00
1081 1118 0.171903 GGTCATGTTCATGCACCAGC 59.828 55.000 19.37 7.26 42.57 4.85
1247 1284 1.216710 CCAGGCTTGTCGAGACCTC 59.783 63.158 0.34 0.00 31.76 3.85
1342 1379 0.251916 TGGCCATAACCAGAGGTTCG 59.748 55.000 0.00 0.00 43.05 3.95
1388 1426 5.721000 GGAGATCAATGGAGACCATCTCTAT 59.279 44.000 14.56 2.56 45.03 1.98
1421 1459 1.145819 TGCTTTTTGCTGTTGGGGC 59.854 52.632 0.00 0.00 43.37 5.80
1475 1513 0.613260 CGGACTCCACCCAAGATTCA 59.387 55.000 0.00 0.00 0.00 2.57
1511 1549 5.353394 TGGTATCCATACTTCAAGGTGAC 57.647 43.478 0.00 0.00 33.81 3.67
1628 1670 3.327757 GGGGCAATAGATGGTACTCATGA 59.672 47.826 0.00 0.00 35.97 3.07
1650 1692 1.077993 ACTGCCAGAGTTCCTAGGTCT 59.922 52.381 9.08 8.74 0.00 3.85
1666 1709 3.303938 AGGTCTAGTCTGCAGCATACAT 58.696 45.455 9.47 0.00 0.00 2.29
1685 1728 1.218316 GGGGAGGAAGCACTACACG 59.782 63.158 0.00 0.00 0.00 4.49
1836 1879 3.007182 CCCCGACAACAAGTTCTACCTTA 59.993 47.826 0.00 0.00 0.00 2.69
1869 1914 2.671619 CATGTCGGCCGGGTGTTT 60.672 61.111 27.83 1.37 0.00 2.83
1919 1964 4.017177 TCTCAACGAGTTCTCTGGTAGA 57.983 45.455 0.00 0.00 32.55 2.59
1965 2010 5.837437 AGCTATTTAATCTCAGACACTCCG 58.163 41.667 0.00 0.00 0.00 4.63
2055 2101 2.421952 CCATTCCACCCATACTCCACTG 60.422 54.545 0.00 0.00 0.00 3.66
2068 2114 2.079925 CTCCACTGAGGTTAAGCTTGC 58.920 52.381 9.86 1.46 39.02 4.01
2158 2204 2.105128 GGTCGAGCCTGACGATGG 59.895 66.667 2.39 0.00 41.62 3.51
2180 2226 1.847798 TTAGCTCCGGCCATGGTGTT 61.848 55.000 14.67 0.00 39.73 3.32
2226 2272 3.382083 AGAACAAAAGGTTGGAGTGGT 57.618 42.857 0.00 0.00 40.63 4.16
2285 2335 6.128035 GGATTTGAAGAAGAGGAAGAAGAAGC 60.128 42.308 0.00 0.00 0.00 3.86
2290 2340 3.072184 AGAAGAGGAAGAAGAAGCAGCAA 59.928 43.478 0.00 0.00 0.00 3.91
2305 2388 1.105167 AGCAACAGCAGCAGAAGCAA 61.105 50.000 0.00 0.00 45.49 3.91
2336 2419 4.776837 AGCAGAAGAAGAGGAAGATGAAGA 59.223 41.667 0.00 0.00 0.00 2.87
2337 2420 5.426185 AGCAGAAGAAGAGGAAGATGAAGAT 59.574 40.000 0.00 0.00 0.00 2.40
2338 2421 5.524646 GCAGAAGAAGAGGAAGATGAAGATG 59.475 44.000 0.00 0.00 0.00 2.90
2339 2422 6.629963 GCAGAAGAAGAGGAAGATGAAGATGA 60.630 42.308 0.00 0.00 0.00 2.92
2340 2423 7.329499 CAGAAGAAGAGGAAGATGAAGATGAA 58.671 38.462 0.00 0.00 0.00 2.57
2341 2424 7.823310 CAGAAGAAGAGGAAGATGAAGATGAAA 59.177 37.037 0.00 0.00 0.00 2.69
2572 2688 2.186160 CGCCTAATGCAATGCGGGA 61.186 57.895 12.77 0.00 43.08 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.806203 CCAACACAATACAACAATCATTCATAT 57.194 29.630 0.00 0.00 0.00 1.78
21 22 8.801299 ACCAACACAATACAACAATCATTCATA 58.199 29.630 0.00 0.00 0.00 2.15
22 23 7.669427 ACCAACACAATACAACAATCATTCAT 58.331 30.769 0.00 0.00 0.00 2.57
23 24 7.048629 ACCAACACAATACAACAATCATTCA 57.951 32.000 0.00 0.00 0.00 2.57
24 25 9.638239 AATACCAACACAATACAACAATCATTC 57.362 29.630 0.00 0.00 0.00 2.67
25 26 9.421806 CAATACCAACACAATACAACAATCATT 57.578 29.630 0.00 0.00 0.00 2.57
26 27 8.801299 TCAATACCAACACAATACAACAATCAT 58.199 29.630 0.00 0.00 0.00 2.45
27 28 8.171164 TCAATACCAACACAATACAACAATCA 57.829 30.769 0.00 0.00 0.00 2.57
34 35 9.249053 ACCAATTATCAATACCAACACAATACA 57.751 29.630 0.00 0.00 0.00 2.29
35 36 9.515020 CACCAATTATCAATACCAACACAATAC 57.485 33.333 0.00 0.00 0.00 1.89
36 37 9.249053 ACACCAATTATCAATACCAACACAATA 57.751 29.630 0.00 0.00 0.00 1.90
37 38 8.034215 CACACCAATTATCAATACCAACACAAT 58.966 33.333 0.00 0.00 0.00 2.71
38 39 7.374272 CACACCAATTATCAATACCAACACAA 58.626 34.615 0.00 0.00 0.00 3.33
39 40 6.071672 CCACACCAATTATCAATACCAACACA 60.072 38.462 0.00 0.00 0.00 3.72
40 41 6.071616 ACCACACCAATTATCAATACCAACAC 60.072 38.462 0.00 0.00 0.00 3.32
41 42 6.013379 ACCACACCAATTATCAATACCAACA 58.987 36.000 0.00 0.00 0.00 3.33
42 43 6.524101 ACCACACCAATTATCAATACCAAC 57.476 37.500 0.00 0.00 0.00 3.77
43 44 8.690884 CAATACCACACCAATTATCAATACCAA 58.309 33.333 0.00 0.00 0.00 3.67
44 45 8.055790 TCAATACCACACCAATTATCAATACCA 58.944 33.333 0.00 0.00 0.00 3.25
45 46 8.458573 TCAATACCACACCAATTATCAATACC 57.541 34.615 0.00 0.00 0.00 2.73
54 55 8.081633 CGCAAATATATCAATACCACACCAATT 58.918 33.333 0.00 0.00 0.00 2.32
55 56 7.309133 CCGCAAATATATCAATACCACACCAAT 60.309 37.037 0.00 0.00 0.00 3.16
56 57 6.016693 CCGCAAATATATCAATACCACACCAA 60.017 38.462 0.00 0.00 0.00 3.67
57 58 5.471797 CCGCAAATATATCAATACCACACCA 59.528 40.000 0.00 0.00 0.00 4.17
58 59 5.703592 TCCGCAAATATATCAATACCACACC 59.296 40.000 0.00 0.00 0.00 4.16
59 60 6.348213 GGTCCGCAAATATATCAATACCACAC 60.348 42.308 0.00 0.00 0.00 3.82
60 61 5.703592 GGTCCGCAAATATATCAATACCACA 59.296 40.000 0.00 0.00 0.00 4.17
61 62 5.163893 CGGTCCGCAAATATATCAATACCAC 60.164 44.000 0.00 0.00 0.00 4.16
62 63 4.932799 CGGTCCGCAAATATATCAATACCA 59.067 41.667 0.00 0.00 0.00 3.25
63 64 4.331717 CCGGTCCGCAAATATATCAATACC 59.668 45.833 5.50 0.00 0.00 2.73
64 65 4.933400 ACCGGTCCGCAAATATATCAATAC 59.067 41.667 0.00 0.00 0.00 1.89
65 66 4.932799 CACCGGTCCGCAAATATATCAATA 59.067 41.667 2.59 0.00 0.00 1.90
66 67 3.751175 CACCGGTCCGCAAATATATCAAT 59.249 43.478 2.59 0.00 0.00 2.57
67 68 3.135225 CACCGGTCCGCAAATATATCAA 58.865 45.455 2.59 0.00 0.00 2.57
68 69 2.549134 CCACCGGTCCGCAAATATATCA 60.549 50.000 2.59 0.00 0.00 2.15
69 70 2.073816 CCACCGGTCCGCAAATATATC 58.926 52.381 2.59 0.00 0.00 1.63
70 71 1.271163 CCCACCGGTCCGCAAATATAT 60.271 52.381 2.59 0.00 0.00 0.86
71 72 0.107081 CCCACCGGTCCGCAAATATA 59.893 55.000 2.59 0.00 0.00 0.86
72 73 1.153046 CCCACCGGTCCGCAAATAT 60.153 57.895 2.59 0.00 0.00 1.28
73 74 1.628238 ATCCCACCGGTCCGCAAATA 61.628 55.000 2.59 0.00 0.00 1.40
74 75 2.978946 ATCCCACCGGTCCGCAAAT 61.979 57.895 2.59 0.00 0.00 2.32
75 76 3.642503 ATCCCACCGGTCCGCAAA 61.643 61.111 2.59 0.00 0.00 3.68
76 77 4.402528 CATCCCACCGGTCCGCAA 62.403 66.667 2.59 0.00 0.00 4.85
78 79 4.530857 CTCATCCCACCGGTCCGC 62.531 72.222 2.59 0.00 0.00 5.54
79 80 3.849951 CCTCATCCCACCGGTCCG 61.850 72.222 2.59 3.60 0.00 4.79
80 81 3.480133 CCCTCATCCCACCGGTCC 61.480 72.222 2.59 0.00 0.00 4.46
81 82 1.766461 ATCCCTCATCCCACCGGTC 60.766 63.158 2.59 0.00 0.00 4.79
82 83 2.072487 CATCCCTCATCCCACCGGT 61.072 63.158 0.00 0.00 0.00 5.28
83 84 2.831770 CATCCCTCATCCCACCGG 59.168 66.667 0.00 0.00 0.00 5.28
84 85 2.111878 GCATCCCTCATCCCACCG 59.888 66.667 0.00 0.00 0.00 4.94
85 86 1.150081 CTGCATCCCTCATCCCACC 59.850 63.158 0.00 0.00 0.00 4.61
86 87 1.527844 GCTGCATCCCTCATCCCAC 60.528 63.158 0.00 0.00 0.00 4.61
87 88 2.921435 GCTGCATCCCTCATCCCA 59.079 61.111 0.00 0.00 0.00 4.37
88 89 2.281345 CGCTGCATCCCTCATCCC 60.281 66.667 0.00 0.00 0.00 3.85
89 90 2.281345 CCGCTGCATCCCTCATCC 60.281 66.667 0.00 0.00 0.00 3.51
90 91 2.281345 CCCGCTGCATCCCTCATC 60.281 66.667 0.00 0.00 0.00 2.92
91 92 4.575973 GCCCGCTGCATCCCTCAT 62.576 66.667 0.00 0.00 40.77 2.90
109 110 4.704833 TGCGGGGTCTGCTCTTGC 62.705 66.667 0.30 0.00 40.20 4.01
110 111 1.580845 CTTTGCGGGGTCTGCTCTTG 61.581 60.000 0.30 0.00 0.00 3.02
111 112 1.302832 CTTTGCGGGGTCTGCTCTT 60.303 57.895 0.30 0.00 0.00 2.85
112 113 2.348998 CTTTGCGGGGTCTGCTCT 59.651 61.111 0.30 0.00 0.00 4.09
113 114 3.435186 GCTTTGCGGGGTCTGCTC 61.435 66.667 0.30 0.00 0.00 4.26
116 117 4.697756 TCGGCTTTGCGGGGTCTG 62.698 66.667 0.00 0.00 0.00 3.51
117 118 4.699522 GTCGGCTTTGCGGGGTCT 62.700 66.667 0.00 0.00 0.00 3.85
122 123 4.745751 TACGGGTCGGCTTTGCGG 62.746 66.667 0.00 0.00 0.00 5.69
123 124 1.843734 TTTTACGGGTCGGCTTTGCG 61.844 55.000 0.00 0.00 0.00 4.85
124 125 0.311477 TTTTTACGGGTCGGCTTTGC 59.689 50.000 0.00 0.00 0.00 3.68
125 126 1.605232 ACTTTTTACGGGTCGGCTTTG 59.395 47.619 0.00 0.00 0.00 2.77
126 127 1.971481 ACTTTTTACGGGTCGGCTTT 58.029 45.000 0.00 0.00 0.00 3.51
127 128 2.837532 TACTTTTTACGGGTCGGCTT 57.162 45.000 0.00 0.00 0.00 4.35
128 129 4.677673 ATATACTTTTTACGGGTCGGCT 57.322 40.909 0.00 0.00 0.00 5.52
129 130 4.212004 GGAATATACTTTTTACGGGTCGGC 59.788 45.833 0.00 0.00 0.00 5.54
130 131 4.445385 CGGAATATACTTTTTACGGGTCGG 59.555 45.833 0.00 0.00 0.00 4.79
131 132 5.043248 ACGGAATATACTTTTTACGGGTCG 58.957 41.667 0.00 0.00 0.00 4.79
132 133 6.042143 TCACGGAATATACTTTTTACGGGTC 58.958 40.000 0.00 0.00 0.00 4.46
133 134 5.976458 TCACGGAATATACTTTTTACGGGT 58.024 37.500 0.00 0.00 0.00 5.28
134 135 6.907206 TTCACGGAATATACTTTTTACGGG 57.093 37.500 0.00 0.00 0.00 5.28
151 152 5.544650 ACCCGTATAAAAGGATATTCACGG 58.455 41.667 0.00 0.00 45.46 4.94
152 153 5.636543 GGACCCGTATAAAAGGATATTCACG 59.363 44.000 0.00 0.00 0.00 4.35
153 154 6.527423 TGGACCCGTATAAAAGGATATTCAC 58.473 40.000 0.00 0.00 0.00 3.18
154 155 6.750660 TGGACCCGTATAAAAGGATATTCA 57.249 37.500 0.00 0.00 0.00 2.57
155 156 8.631480 AAATGGACCCGTATAAAAGGATATTC 57.369 34.615 0.00 0.00 0.00 1.75
156 157 8.856103 CAAAATGGACCCGTATAAAAGGATATT 58.144 33.333 0.00 0.00 0.00 1.28
157 158 7.450323 CCAAAATGGACCCGTATAAAAGGATAT 59.550 37.037 0.00 0.00 40.96 1.63
158 159 6.773685 CCAAAATGGACCCGTATAAAAGGATA 59.226 38.462 0.00 0.00 40.96 2.59
159 160 5.596772 CCAAAATGGACCCGTATAAAAGGAT 59.403 40.000 0.00 0.00 40.96 3.24
160 161 4.951094 CCAAAATGGACCCGTATAAAAGGA 59.049 41.667 0.00 0.00 40.96 3.36
161 162 4.098807 CCCAAAATGGACCCGTATAAAAGG 59.901 45.833 0.00 0.00 40.96 3.11
162 163 4.098807 CCCCAAAATGGACCCGTATAAAAG 59.901 45.833 0.00 0.00 40.96 2.27
163 164 4.024670 CCCCAAAATGGACCCGTATAAAA 58.975 43.478 0.00 0.00 40.96 1.52
164 165 3.627747 CCCCCAAAATGGACCCGTATAAA 60.628 47.826 0.00 0.00 40.96 1.40
165 166 2.091775 CCCCCAAAATGGACCCGTATAA 60.092 50.000 0.00 0.00 40.96 0.98
166 167 1.495574 CCCCCAAAATGGACCCGTATA 59.504 52.381 0.00 0.00 40.96 1.47
167 168 0.260523 CCCCCAAAATGGACCCGTAT 59.739 55.000 0.00 0.00 40.96 3.06
168 169 1.692428 CCCCCAAAATGGACCCGTA 59.308 57.895 0.00 0.00 40.96 4.02
169 170 2.443324 CCCCCAAAATGGACCCGT 59.557 61.111 0.00 0.00 40.96 5.28
183 184 4.256180 CCGCATAGGCAGACCCCC 62.256 72.222 0.00 0.00 41.24 5.40
208 209 3.864686 CATCTTTGCGGGCCGACG 61.865 66.667 33.44 13.92 0.00 5.12
209 210 1.862602 AAACATCTTTGCGGGCCGAC 61.863 55.000 33.44 21.47 0.00 4.79
210 211 1.175983 AAAACATCTTTGCGGGCCGA 61.176 50.000 33.44 12.50 0.00 5.54
211 212 0.319469 AAAAACATCTTTGCGGGCCG 60.319 50.000 24.35 24.35 0.00 6.13
212 213 1.428448 GAAAAACATCTTTGCGGGCC 58.572 50.000 0.00 0.00 0.00 5.80
213 214 1.270041 TGGAAAAACATCTTTGCGGGC 60.270 47.619 0.00 0.00 29.86 6.13
214 215 2.403259 GTGGAAAAACATCTTTGCGGG 58.597 47.619 0.00 0.00 29.86 6.13
215 216 2.050691 CGTGGAAAAACATCTTTGCGG 58.949 47.619 0.00 0.00 29.86 5.69
216 217 2.993545 TCGTGGAAAAACATCTTTGCG 58.006 42.857 0.00 0.00 29.86 4.85
217 218 4.207019 CAGTTCGTGGAAAAACATCTTTGC 59.793 41.667 0.00 0.00 0.00 3.68
218 219 4.207019 GCAGTTCGTGGAAAAACATCTTTG 59.793 41.667 0.00 0.00 0.00 2.77
219 220 4.142271 TGCAGTTCGTGGAAAAACATCTTT 60.142 37.500 0.00 0.00 0.00 2.52
220 221 3.380004 TGCAGTTCGTGGAAAAACATCTT 59.620 39.130 0.00 0.00 0.00 2.40
221 222 2.948979 TGCAGTTCGTGGAAAAACATCT 59.051 40.909 0.00 0.00 0.00 2.90
222 223 3.347958 TGCAGTTCGTGGAAAAACATC 57.652 42.857 0.00 0.00 0.00 3.06
223 224 3.791973 TTGCAGTTCGTGGAAAAACAT 57.208 38.095 0.00 0.00 32.74 2.71
224 225 3.246619 GTTTGCAGTTCGTGGAAAAACA 58.753 40.909 0.00 0.00 46.80 2.83
225 226 2.277834 CGTTTGCAGTTCGTGGAAAAAC 59.722 45.455 0.00 0.00 46.80 2.43
226 227 2.520979 CGTTTGCAGTTCGTGGAAAAA 58.479 42.857 0.00 0.00 46.80 1.94
227 228 1.795889 GCGTTTGCAGTTCGTGGAAAA 60.796 47.619 8.51 0.00 46.80 2.29
228 229 0.248296 GCGTTTGCAGTTCGTGGAAA 60.248 50.000 8.51 0.00 43.59 3.13
229 230 1.353804 GCGTTTGCAGTTCGTGGAA 59.646 52.632 8.51 0.00 42.15 3.53
230 231 2.876879 CGCGTTTGCAGTTCGTGGA 61.877 57.895 0.00 0.00 42.97 4.02
231 232 2.425124 CGCGTTTGCAGTTCGTGG 60.425 61.111 0.00 1.54 42.97 4.94
232 233 0.859788 AAACGCGTTTGCAGTTCGTG 60.860 50.000 34.36 15.35 42.97 4.35
233 234 0.179184 AAAACGCGTTTGCAGTTCGT 60.179 45.000 35.31 16.10 42.97 3.85
234 235 0.223513 CAAAACGCGTTTGCAGTTCG 59.776 50.000 35.31 15.11 40.25 3.95
263 264 3.161450 TAGCAGACCCCGCATCCC 61.161 66.667 0.00 0.00 0.00 3.85
264 265 2.093537 CTCTAGCAGACCCCGCATCC 62.094 65.000 0.00 0.00 0.00 3.51
265 266 1.365633 CTCTAGCAGACCCCGCATC 59.634 63.158 0.00 0.00 0.00 3.91
266 267 0.978146 AACTCTAGCAGACCCCGCAT 60.978 55.000 0.00 0.00 0.00 4.73
267 268 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
268 269 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
269 270 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
270 271 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
271 272 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
272 273 3.697045 TCTTAGAGCAACTCTAGCAGACC 59.303 47.826 4.64 0.00 42.92 3.85
273 274 4.398044 AGTCTTAGAGCAACTCTAGCAGAC 59.602 45.833 19.61 19.61 43.79 3.51
274 275 4.594970 AGTCTTAGAGCAACTCTAGCAGA 58.405 43.478 4.64 3.80 42.92 4.26
275 276 4.981806 AGTCTTAGAGCAACTCTAGCAG 57.018 45.455 4.64 1.69 42.92 4.24
276 277 5.502079 AGTAGTCTTAGAGCAACTCTAGCA 58.498 41.667 4.64 0.00 42.92 3.49
277 278 5.587043 TGAGTAGTCTTAGAGCAACTCTAGC 59.413 44.000 15.14 1.17 42.92 3.42
278 279 7.801716 ATGAGTAGTCTTAGAGCAACTCTAG 57.198 40.000 15.14 1.08 42.92 2.43
279 280 8.462811 CAAATGAGTAGTCTTAGAGCAACTCTA 58.537 37.037 15.14 0.16 41.50 2.43
280 281 7.177568 TCAAATGAGTAGTCTTAGAGCAACTCT 59.822 37.037 15.14 2.23 43.83 3.24
281 282 7.316640 TCAAATGAGTAGTCTTAGAGCAACTC 58.683 38.462 10.04 10.04 35.13 3.01
282 283 7.233389 TCAAATGAGTAGTCTTAGAGCAACT 57.767 36.000 0.00 0.00 0.00 3.16
283 284 7.600752 ACTTCAAATGAGTAGTCTTAGAGCAAC 59.399 37.037 0.00 0.00 0.00 4.17
284 285 7.600375 CACTTCAAATGAGTAGTCTTAGAGCAA 59.400 37.037 0.00 0.00 0.00 3.91
285 286 7.093354 CACTTCAAATGAGTAGTCTTAGAGCA 58.907 38.462 0.00 0.00 0.00 4.26
286 287 6.533367 CCACTTCAAATGAGTAGTCTTAGAGC 59.467 42.308 0.00 0.00 0.00 4.09
287 288 7.038659 CCCACTTCAAATGAGTAGTCTTAGAG 58.961 42.308 0.00 0.00 0.00 2.43
288 289 6.724441 TCCCACTTCAAATGAGTAGTCTTAGA 59.276 38.462 0.00 0.00 0.00 2.10
289 290 6.936279 TCCCACTTCAAATGAGTAGTCTTAG 58.064 40.000 0.00 0.00 0.00 2.18
290 291 6.497259 ACTCCCACTTCAAATGAGTAGTCTTA 59.503 38.462 0.00 0.00 34.68 2.10
291 292 5.308237 ACTCCCACTTCAAATGAGTAGTCTT 59.692 40.000 0.00 0.00 34.68 3.01
292 293 4.841246 ACTCCCACTTCAAATGAGTAGTCT 59.159 41.667 0.00 0.00 34.68 3.24
293 294 4.932200 CACTCCCACTTCAAATGAGTAGTC 59.068 45.833 0.00 0.00 34.68 2.59
294 295 4.263068 CCACTCCCACTTCAAATGAGTAGT 60.263 45.833 0.00 0.00 34.68 2.73
295 296 4.256920 CCACTCCCACTTCAAATGAGTAG 58.743 47.826 0.00 0.00 34.68 2.57
296 297 3.009033 CCCACTCCCACTTCAAATGAGTA 59.991 47.826 0.00 0.00 34.68 2.59
297 298 2.224867 CCCACTCCCACTTCAAATGAGT 60.225 50.000 0.00 0.00 36.77 3.41
298 299 2.040278 TCCCACTCCCACTTCAAATGAG 59.960 50.000 0.00 0.00 0.00 2.90
299 300 2.061848 TCCCACTCCCACTTCAAATGA 58.938 47.619 0.00 0.00 0.00 2.57
300 301 2.162681 GTCCCACTCCCACTTCAAATG 58.837 52.381 0.00 0.00 0.00 2.32
301 302 1.780309 TGTCCCACTCCCACTTCAAAT 59.220 47.619 0.00 0.00 0.00 2.32
302 303 1.142870 CTGTCCCACTCCCACTTCAAA 59.857 52.381 0.00 0.00 0.00 2.69
303 304 0.764890 CTGTCCCACTCCCACTTCAA 59.235 55.000 0.00 0.00 0.00 2.69
304 305 0.105194 TCTGTCCCACTCCCACTTCA 60.105 55.000 0.00 0.00 0.00 3.02
305 306 0.610687 CTCTGTCCCACTCCCACTTC 59.389 60.000 0.00 0.00 0.00 3.01
306 307 0.838122 CCTCTGTCCCACTCCCACTT 60.838 60.000 0.00 0.00 0.00 3.16
307 308 1.229336 CCTCTGTCCCACTCCCACT 60.229 63.158 0.00 0.00 0.00 4.00
308 309 1.128188 AACCTCTGTCCCACTCCCAC 61.128 60.000 0.00 0.00 0.00 4.61
309 310 1.127567 CAACCTCTGTCCCACTCCCA 61.128 60.000 0.00 0.00 0.00 4.37
310 311 1.679898 CAACCTCTGTCCCACTCCC 59.320 63.158 0.00 0.00 0.00 4.30
311 312 1.003233 GCAACCTCTGTCCCACTCC 60.003 63.158 0.00 0.00 0.00 3.85
312 313 0.036858 GAGCAACCTCTGTCCCACTC 60.037 60.000 0.00 0.00 35.16 3.51
313 314 1.821061 CGAGCAACCTCTGTCCCACT 61.821 60.000 0.00 0.00 35.90 4.00
314 315 1.374758 CGAGCAACCTCTGTCCCAC 60.375 63.158 0.00 0.00 35.90 4.61
315 316 2.583441 CCGAGCAACCTCTGTCCCA 61.583 63.158 0.00 0.00 35.90 4.37
316 317 2.266055 CCGAGCAACCTCTGTCCC 59.734 66.667 0.00 0.00 35.90 4.46
317 318 2.266055 CCCGAGCAACCTCTGTCC 59.734 66.667 0.00 0.00 35.90 4.02
318 319 1.827399 TTCCCCGAGCAACCTCTGTC 61.827 60.000 0.00 0.00 35.90 3.51
319 320 1.831652 CTTCCCCGAGCAACCTCTGT 61.832 60.000 0.00 0.00 35.90 3.41
320 321 1.078848 CTTCCCCGAGCAACCTCTG 60.079 63.158 0.00 0.00 35.90 3.35
321 322 0.836400 TTCTTCCCCGAGCAACCTCT 60.836 55.000 0.00 0.00 35.90 3.69
322 323 0.673956 GTTCTTCCCCGAGCAACCTC 60.674 60.000 0.00 0.00 34.66 3.85
323 324 1.375326 GTTCTTCCCCGAGCAACCT 59.625 57.895 0.00 0.00 0.00 3.50
324 325 2.033194 CGTTCTTCCCCGAGCAACC 61.033 63.158 0.00 0.00 0.00 3.77
325 326 2.033194 CCGTTCTTCCCCGAGCAAC 61.033 63.158 0.00 0.00 0.00 4.17
326 327 2.345991 CCGTTCTTCCCCGAGCAA 59.654 61.111 0.00 0.00 0.00 3.91
327 328 4.388499 GCCGTTCTTCCCCGAGCA 62.388 66.667 0.00 0.00 0.00 4.26
329 330 4.814294 CGGCCGTTCTTCCCCGAG 62.814 72.222 19.50 0.00 43.20 4.63
347 348 3.443045 CTCCACCAATGGCGCACC 61.443 66.667 10.83 0.00 46.80 5.01
351 352 1.535204 AAAAGGCTCCACCAATGGCG 61.535 55.000 0.00 0.00 46.80 5.69
352 353 0.037046 CAAAAGGCTCCACCAATGGC 60.037 55.000 0.00 0.00 46.80 4.40
353 354 2.712089 TGCAAAAGGCTCCACCAATGG 61.712 52.381 0.00 0.00 43.86 3.16
354 355 0.680618 TGCAAAAGGCTCCACCAATG 59.319 50.000 0.00 0.00 45.15 2.82
355 356 1.345415 CTTGCAAAAGGCTCCACCAAT 59.655 47.619 0.00 0.00 45.15 3.16
356 357 0.752054 CTTGCAAAAGGCTCCACCAA 59.248 50.000 0.00 0.00 45.15 3.67
357 358 0.396974 ACTTGCAAAAGGCTCCACCA 60.397 50.000 0.00 0.00 45.15 4.17
358 359 0.032540 CACTTGCAAAAGGCTCCACC 59.967 55.000 0.00 0.00 45.15 4.61
359 360 0.032540 CCACTTGCAAAAGGCTCCAC 59.967 55.000 0.00 0.00 45.15 4.02
360 361 0.396974 ACCACTTGCAAAAGGCTCCA 60.397 50.000 14.89 0.00 45.15 3.86
361 362 1.269723 GTACCACTTGCAAAAGGCTCC 59.730 52.381 14.89 2.20 45.15 4.70
362 363 1.269723 GGTACCACTTGCAAAAGGCTC 59.730 52.381 7.15 9.10 45.15 4.70
363 364 1.328279 GGTACCACTTGCAAAAGGCT 58.672 50.000 7.15 6.85 45.15 4.58
364 365 1.000274 CTGGTACCACTTGCAAAAGGC 60.000 52.381 11.60 2.34 45.13 4.35
365 366 2.582052 TCTGGTACCACTTGCAAAAGG 58.418 47.619 11.60 13.70 0.00 3.11
366 367 4.549458 CAATCTGGTACCACTTGCAAAAG 58.451 43.478 11.60 0.00 0.00 2.27
367 368 3.243704 GCAATCTGGTACCACTTGCAAAA 60.244 43.478 33.01 7.39 38.40 2.44
368 369 2.295909 GCAATCTGGTACCACTTGCAAA 59.704 45.455 33.01 8.01 38.40 3.68
369 370 1.885887 GCAATCTGGTACCACTTGCAA 59.114 47.619 33.01 11.63 38.40 4.08
370 371 1.202867 TGCAATCTGGTACCACTTGCA 60.203 47.619 35.00 35.00 42.27 4.08
371 372 1.533625 TGCAATCTGGTACCACTTGC 58.466 50.000 32.15 32.15 38.71 4.01
372 373 2.159338 GCATGCAATCTGGTACCACTTG 60.159 50.000 20.86 20.86 0.00 3.16
373 374 2.094675 GCATGCAATCTGGTACCACTT 58.905 47.619 11.60 4.74 0.00 3.16
374 375 1.004628 TGCATGCAATCTGGTACCACT 59.995 47.619 20.30 0.00 0.00 4.00
375 376 1.402968 CTGCATGCAATCTGGTACCAC 59.597 52.381 22.88 0.85 0.00 4.16
376 377 1.281577 TCTGCATGCAATCTGGTACCA 59.718 47.619 22.88 15.39 0.00 3.25
377 378 2.042686 TCTGCATGCAATCTGGTACC 57.957 50.000 22.88 4.43 0.00 3.34
378 379 2.551459 GGATCTGCATGCAATCTGGTAC 59.449 50.000 27.07 11.91 0.00 3.34
379 380 2.440627 AGGATCTGCATGCAATCTGGTA 59.559 45.455 27.07 10.29 0.00 3.25
380 381 1.214673 AGGATCTGCATGCAATCTGGT 59.785 47.619 27.07 14.13 0.00 4.00
381 382 1.982660 AGGATCTGCATGCAATCTGG 58.017 50.000 27.07 16.39 0.00 3.86
382 383 3.502595 CCTTAGGATCTGCATGCAATCTG 59.497 47.826 27.07 16.68 0.00 2.90
383 384 3.498121 CCCTTAGGATCTGCATGCAATCT 60.498 47.826 27.07 20.94 33.47 2.40
384 385 2.818432 CCCTTAGGATCTGCATGCAATC 59.182 50.000 22.88 23.26 33.47 2.67
385 386 2.872732 CCCTTAGGATCTGCATGCAAT 58.127 47.619 22.88 17.15 33.47 3.56
386 387 1.751733 GCCCTTAGGATCTGCATGCAA 60.752 52.381 22.88 13.05 33.47 4.08
387 388 0.179009 GCCCTTAGGATCTGCATGCA 60.179 55.000 21.29 21.29 33.47 3.96
388 389 1.233285 CGCCCTTAGGATCTGCATGC 61.233 60.000 11.82 11.82 33.47 4.06
389 390 0.107456 ACGCCCTTAGGATCTGCATG 59.893 55.000 0.00 0.00 33.47 4.06
390 391 0.107456 CACGCCCTTAGGATCTGCAT 59.893 55.000 0.00 0.00 33.47 3.96
391 392 1.264749 ACACGCCCTTAGGATCTGCA 61.265 55.000 0.00 0.00 33.47 4.41
392 393 0.107654 AACACGCCCTTAGGATCTGC 60.108 55.000 0.00 0.00 33.47 4.26
393 394 2.009774 CAAACACGCCCTTAGGATCTG 58.990 52.381 0.00 0.00 33.47 2.90
394 395 1.065418 CCAAACACGCCCTTAGGATCT 60.065 52.381 0.00 0.00 33.47 2.75
395 396 1.339727 ACCAAACACGCCCTTAGGATC 60.340 52.381 0.00 0.00 33.47 3.36
396 397 0.696501 ACCAAACACGCCCTTAGGAT 59.303 50.000 0.00 0.00 33.47 3.24
397 398 0.475044 AACCAAACACGCCCTTAGGA 59.525 50.000 0.00 0.00 33.47 2.94
398 399 0.596082 CAACCAAACACGCCCTTAGG 59.404 55.000 0.00 0.00 0.00 2.69
441 442 2.573869 CCTCTTCCTTCTCGCGCA 59.426 61.111 8.75 0.00 0.00 6.09
447 448 1.074566 CCAAACAGGCCTCTTCCTTCT 59.925 52.381 0.00 0.00 33.25 2.85
474 475 1.444119 GCAGACCCAACAGCGAAACA 61.444 55.000 0.00 0.00 0.00 2.83
480 481 0.391130 TACGATGCAGACCCAACAGC 60.391 55.000 0.00 0.00 0.00 4.40
489 490 0.808755 TGAGAAGCGTACGATGCAGA 59.191 50.000 21.65 0.00 31.07 4.26
539 540 0.173708 GAGAAACTGCCGATCCGAGT 59.826 55.000 0.00 0.00 0.00 4.18
587 588 2.267642 GTCACACCCGCCTATGCA 59.732 61.111 0.00 0.00 37.32 3.96
677 681 1.183549 GGGTGAGCGAGTAGAAAGGA 58.816 55.000 0.00 0.00 0.00 3.36
810 842 2.360475 GCAAGGGGAGCACCAGAC 60.360 66.667 1.58 0.00 42.91 3.51
889 924 3.751246 GCTGCTTGCCGGCATCAA 61.751 61.111 33.25 15.52 45.47 2.57
918 955 3.871074 GCCTAACCACCGACCTAACAAAT 60.871 47.826 0.00 0.00 0.00 2.32
950 987 5.160607 AGTGGAAAATCGATCTTACACCA 57.839 39.130 20.79 11.52 0.00 4.17
957 994 6.019801 CGATTCGTTTAGTGGAAAATCGATCT 60.020 38.462 0.00 0.00 37.42 2.75
980 1017 4.753610 CCATAACCTAGTCGACATAGACGA 59.246 45.833 19.50 5.55 45.26 4.20
985 1022 3.251729 GCGTCCATAACCTAGTCGACATA 59.748 47.826 19.50 6.45 0.00 2.29
1058 1095 2.025510 TGGTGCATGAACATGACCCATA 60.026 45.455 17.40 5.38 41.20 2.74
1342 1379 1.265905 GAACGTGTTGTGAATGACCCC 59.734 52.381 0.00 0.00 0.00 4.95
1421 1459 3.191162 CCTGATCATCTCTCCTCTAAGCG 59.809 52.174 0.00 0.00 0.00 4.68
1486 1524 5.071788 TCACCTTGAAGTATGGATACCATCC 59.928 44.000 6.55 0.00 40.74 3.51
1511 1549 7.475015 CCATGAAAAGTGTATATTGTCAGTGG 58.525 38.462 0.00 0.00 0.00 4.00
1628 1670 1.270907 CCTAGGAACTCTGGCAGTGT 58.729 55.000 15.98 15.98 41.75 3.55
1650 1692 1.417517 CCCCATGTATGCTGCAGACTA 59.582 52.381 25.50 13.90 0.00 2.59
1666 1709 1.541310 CGTGTAGTGCTTCCTCCCCA 61.541 60.000 0.00 0.00 0.00 4.96
1685 1728 0.170561 CAGCAAGCACATTCTGGCTC 59.829 55.000 0.00 0.00 41.25 4.70
1821 1864 7.162082 CCAACATCTCTAAGGTAGAACTTGTT 58.838 38.462 0.00 0.00 34.39 2.83
1836 1879 3.474600 GACATGCATAGCCAACATCTCT 58.525 45.455 0.00 0.00 0.00 3.10
1869 1914 2.023888 TGGTTTTCCTGAAGGGTGGAAA 60.024 45.455 3.40 3.40 46.72 3.13
1919 1964 3.452627 CCTGTGCTGTCCTAGGATAGTTT 59.547 47.826 29.84 0.00 36.82 2.66
1965 2010 4.382147 CCTCTCAACAGTTACTCTAAGGCC 60.382 50.000 0.00 0.00 0.00 5.19
2055 2101 2.431454 AGCAAGAGCAAGCTTAACCTC 58.569 47.619 0.00 5.76 45.49 3.85
2107 2153 1.238439 CACGTGTTCATCAAAGCCCT 58.762 50.000 7.58 0.00 0.00 5.19
2158 2204 1.819632 CCATGGCCGGAGCTAACAC 60.820 63.158 5.05 0.00 39.73 3.32
2180 2226 1.199789 GCGTCATTGTCAAATGCCTGA 59.800 47.619 0.00 0.00 42.55 3.86
2226 2272 2.224744 TGTTAAGCCACATTGCCTCTGA 60.225 45.455 0.00 0.00 0.00 3.27
2285 2335 1.081376 GCTTCTGCTGCTGTTGCTG 60.081 57.895 0.00 0.00 40.48 4.41
2290 2340 0.031721 GCTTTTGCTTCTGCTGCTGT 59.968 50.000 0.00 0.00 43.35 4.40
2305 2388 3.072184 TCCTCTTCTTCTGCTTCTGCTTT 59.928 43.478 0.00 0.00 40.48 3.51
2336 2419 4.081406 TGTTGCTGCTACCAGATTTTCAT 58.919 39.130 11.51 0.00 41.77 2.57
2337 2420 3.253188 GTGTTGCTGCTACCAGATTTTCA 59.747 43.478 11.51 0.00 41.77 2.69
2338 2421 3.366374 GGTGTTGCTGCTACCAGATTTTC 60.366 47.826 11.51 0.00 41.77 2.29
2339 2422 2.558359 GGTGTTGCTGCTACCAGATTTT 59.442 45.455 11.51 0.00 41.77 1.82
2340 2423 2.162681 GGTGTTGCTGCTACCAGATTT 58.837 47.619 11.51 0.00 41.77 2.17
2341 2424 1.073763 TGGTGTTGCTGCTACCAGATT 59.926 47.619 16.18 0.00 41.77 2.40
2535 2651 2.853594 GCGCACATATGAAATGGTGTTG 59.146 45.455 10.38 0.00 35.97 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.