Multiple sequence alignment - TraesCS6B01G117100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G117100 chr6B 100.000 8214 0 0 1 8214 106505094 106513307 0.000000e+00 15169.0
1 TraesCS6B01G117100 chr6B 95.652 69 3 0 6459 6527 106511519 106511587 2.420000e-20 111.0
2 TraesCS6B01G117100 chrUn 95.957 3883 103 13 3770 7618 97781849 97785711 0.000000e+00 6252.0
3 TraesCS6B01G117100 chrUn 94.363 3264 130 20 486 3731 97778621 97781848 0.000000e+00 4959.0
4 TraesCS6B01G117100 chrUn 96.514 545 18 1 7671 8214 97785704 97786248 0.000000e+00 900.0
5 TraesCS6B01G117100 chrUn 85.747 435 14 14 139 541 97778185 97778603 4.590000e-112 416.0
6 TraesCS6B01G117100 chrUn 71.613 930 214 38 4526 5430 111209392 111208488 8.350000e-50 209.0
7 TraesCS6B01G117100 chr1D 90.809 1001 80 8 4575 5567 476570431 476569435 0.000000e+00 1328.0
8 TraesCS6B01G117100 chr1D 84.887 1105 144 17 6459 7555 476568628 476567539 0.000000e+00 1094.0
9 TraesCS6B01G117100 chr1D 83.022 695 96 14 1173 1859 476575340 476574660 1.960000e-170 610.0
10 TraesCS6B01G117100 chr1D 80.231 607 92 14 7597 8195 476567536 476566950 1.640000e-116 431.0
11 TraesCS6B01G117100 chr1D 78.662 553 70 20 5718 6223 476569339 476568788 2.860000e-84 324.0
12 TraesCS6B01G117100 chr1D 80.938 320 43 9 1968 2273 476574660 476574345 3.830000e-58 237.0
13 TraesCS6B01G117100 chr1D 90.000 180 18 0 6318 6497 476568736 476568557 4.960000e-57 233.0
14 TraesCS6B01G117100 chr1D 94.118 85 5 0 1 85 427323816 427323732 6.690000e-26 130.0
15 TraesCS6B01G117100 chr5D 80.884 1742 282 28 6492 8214 528764420 528766129 0.000000e+00 1325.0
16 TraesCS6B01G117100 chr5D 80.366 1747 291 32 6492 8214 528805549 528807267 0.000000e+00 1279.0
17 TraesCS6B01G117100 chr5D 81.027 1460 265 5 6734 8186 528753430 528754884 0.000000e+00 1151.0
18 TraesCS6B01G117100 chr5D 83.149 1264 193 16 4261 5513 528803257 528804511 0.000000e+00 1136.0
19 TraesCS6B01G117100 chr5D 82.970 1239 177 19 4291 5513 528762762 528763982 0.000000e+00 1088.0
20 TraesCS6B01G117100 chr5D 82.151 1255 202 14 4267 5511 528747822 528749064 0.000000e+00 1057.0
21 TraesCS6B01G117100 chr5D 81.176 1020 147 21 858 1855 4258530 4257534 0.000000e+00 778.0
22 TraesCS6B01G117100 chr5D 79.867 452 74 15 1969 2415 4257529 4257090 1.720000e-81 315.0
23 TraesCS6B01G117100 chr5D 86.070 201 25 1 6492 6692 528753218 528753415 6.460000e-51 213.0
24 TraesCS6B01G117100 chr5D 95.652 92 3 1 1 91 392071046 392071137 6.640000e-31 147.0
25 TraesCS6B01G117100 chr5D 77.880 217 44 4 2787 3001 4255546 4255332 1.860000e-26 132.0
26 TraesCS6B01G117100 chr1B 90.010 1001 88 8 4575 5567 662843695 662842699 0.000000e+00 1284.0
27 TraesCS6B01G117100 chr1B 82.963 675 94 13 1192 1859 662847951 662847291 2.550000e-164 590.0
28 TraesCS6B01G117100 chr1B 88.571 455 52 0 6632 7086 662836823 662836369 3.350000e-153 553.0
29 TraesCS6B01G117100 chr1B 81.544 596 87 14 7597 8182 662836358 662835776 3.470000e-128 470.0
30 TraesCS6B01G117100 chr1B 79.407 607 91 17 2789 3387 662844901 662844321 1.660000e-106 398.0
31 TraesCS6B01G117100 chr1B 82.245 490 52 19 6032 6497 662837460 662836982 2.780000e-104 390.0
32 TraesCS6B01G117100 chr1B 80.938 320 42 10 1968 2273 662847291 662846977 1.380000e-57 235.0
33 TraesCS6B01G117100 chr1B 88.043 92 10 1 5903 5993 662842369 662842278 3.130000e-19 108.0
34 TraesCS6B01G117100 chr5B 82.199 1264 192 18 4261 5510 665939087 665940331 0.000000e+00 1057.0
35 TraesCS6B01G117100 chr5B 82.086 1256 205 12 4261 5504 665958684 665959931 0.000000e+00 1055.0
36 TraesCS6B01G117100 chr5B 83.445 1045 133 31 843 1859 6885537 6884505 0.000000e+00 935.0
37 TraesCS6B01G117100 chr5B 79.304 1092 205 10 7139 8214 665941588 665942674 0.000000e+00 745.0
38 TraesCS6B01G117100 chr5B 85.779 661 78 8 1178 1825 64641599 64640942 0.000000e+00 686.0
39 TraesCS6B01G117100 chr5B 79.649 855 151 14 1021 1855 7024448 7023597 1.970000e-165 593.0
40 TraesCS6B01G117100 chr5B 78.990 614 88 18 6492 7103 665940958 665941532 1.670000e-101 381.0
41 TraesCS6B01G117100 chr5B 80.966 352 60 6 2705 3049 7022945 7022594 1.050000e-68 272.0
42 TraesCS6B01G117100 chr5B 75.369 609 116 19 2785 3373 6883609 6883015 6.320000e-66 263.0
43 TraesCS6B01G117100 chr5B 78.472 432 64 13 6492 6916 665961326 665961735 1.060000e-63 255.0
44 TraesCS6B01G117100 chr5B 74.945 451 77 18 2727 3167 64741551 64741127 3.050000e-39 174.0
45 TraesCS6B01G117100 chr5B 94.565 92 4 1 1 91 473083822 473083913 3.090000e-29 141.0
46 TraesCS6B01G117100 chr4A 84.449 1016 131 14 824 1825 18124085 18123083 0.000000e+00 976.0
47 TraesCS6B01G117100 chr4A 81.711 935 135 28 944 1856 18271811 18272731 0.000000e+00 747.0
48 TraesCS6B01G117100 chr4A 77.922 231 48 2 2800 3027 18121415 18121185 3.090000e-29 141.0
49 TraesCS6B01G117100 chr5A 82.092 631 80 14 1243 1855 4222257 4222872 7.350000e-140 508.0
50 TraesCS6B01G117100 chr5A 91.011 89 7 1 1 88 597502837 597502749 1.450000e-22 119.0
51 TraesCS6B01G117100 chr4B 72.085 849 201 30 4600 5430 662003025 662003855 1.070000e-53 222.0
52 TraesCS6B01G117100 chr4B 93.827 81 4 1 2 81 620940617 620940537 4.030000e-23 121.0
53 TraesCS6B01G117100 chr6D 95.050 101 4 1 1 100 470029079 470029179 3.070000e-34 158.0
54 TraesCS6B01G117100 chr2D 94.048 84 4 1 1 83 619051659 619051742 8.650000e-25 126.0
55 TraesCS6B01G117100 chr2D 93.976 83 4 1 1 82 155469740 155469822 3.110000e-24 124.0
56 TraesCS6B01G117100 chr3B 91.860 86 6 1 1 85 237216645 237216560 1.450000e-22 119.0
57 TraesCS6B01G117100 chr2B 100.000 35 0 0 98 132 746491456 746491490 1.910000e-06 65.8
58 TraesCS6B01G117100 chr2B 100.000 35 0 0 98 132 746809682 746809716 1.910000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G117100 chr6B 106505094 106513307 8213 False 7640.000000 15169 97.826000 1 8214 2 chr6B.!!$F1 8213
1 TraesCS6B01G117100 chrUn 97778185 97786248 8063 False 3131.750000 6252 93.145250 139 8214 4 chrUn.!!$F1 8075
2 TraesCS6B01G117100 chrUn 111208488 111209392 904 True 209.000000 209 71.613000 4526 5430 1 chrUn.!!$R1 904
3 TraesCS6B01G117100 chr1D 476566950 476575340 8390 True 608.142857 1328 84.078429 1173 8195 7 chr1D.!!$R2 7022
4 TraesCS6B01G117100 chr5D 528803257 528807267 4010 False 1207.500000 1279 81.757500 4261 8214 2 chr5D.!!$F5 3953
5 TraesCS6B01G117100 chr5D 528762762 528766129 3367 False 1206.500000 1325 81.927000 4291 8214 2 chr5D.!!$F4 3923
6 TraesCS6B01G117100 chr5D 528747822 528749064 1242 False 1057.000000 1057 82.151000 4267 5511 1 chr5D.!!$F2 1244
7 TraesCS6B01G117100 chr5D 528753218 528754884 1666 False 682.000000 1151 83.548500 6492 8186 2 chr5D.!!$F3 1694
8 TraesCS6B01G117100 chr5D 4255332 4258530 3198 True 408.333333 778 79.641000 858 3001 3 chr5D.!!$R1 2143
9 TraesCS6B01G117100 chr1B 662842278 662847951 5673 True 523.000000 1284 84.272200 1192 5993 5 chr1B.!!$R2 4801
10 TraesCS6B01G117100 chr1B 662835776 662837460 1684 True 471.000000 553 84.120000 6032 8182 3 chr1B.!!$R1 2150
11 TraesCS6B01G117100 chr5B 665939087 665942674 3587 False 727.666667 1057 80.164333 4261 8214 3 chr5B.!!$F2 3953
12 TraesCS6B01G117100 chr5B 64640942 64641599 657 True 686.000000 686 85.779000 1178 1825 1 chr5B.!!$R1 647
13 TraesCS6B01G117100 chr5B 665958684 665961735 3051 False 655.000000 1055 80.279000 4261 6916 2 chr5B.!!$F3 2655
14 TraesCS6B01G117100 chr5B 6883015 6885537 2522 True 599.000000 935 79.407000 843 3373 2 chr5B.!!$R3 2530
15 TraesCS6B01G117100 chr5B 7022594 7024448 1854 True 432.500000 593 80.307500 1021 3049 2 chr5B.!!$R4 2028
16 TraesCS6B01G117100 chr4A 18271811 18272731 920 False 747.000000 747 81.711000 944 1856 1 chr4A.!!$F1 912
17 TraesCS6B01G117100 chr4A 18121185 18124085 2900 True 558.500000 976 81.185500 824 3027 2 chr4A.!!$R1 2203
18 TraesCS6B01G117100 chr5A 4222257 4222872 615 False 508.000000 508 82.092000 1243 1855 1 chr5A.!!$F1 612
19 TraesCS6B01G117100 chr4B 662003025 662003855 830 False 222.000000 222 72.085000 4600 5430 1 chr4B.!!$F1 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.036765 TCGTATCTTGGGCGCAAAGT 60.037 50.000 17.59 10.98 0.00 2.66 F
132 133 0.179108 GTACTGCACCCGGATGAGTC 60.179 60.000 0.00 0.00 0.00 3.36 F
395 419 0.246635 GGTTCAGCTAGCGAGTGGAA 59.753 55.000 9.55 6.87 0.00 3.53 F
747 856 0.321122 GAGGAGTTGGACAGTGCTGG 60.321 60.000 4.11 0.00 34.19 4.85 F
853 964 0.475906 AGAATGCTAGGACCATGCCC 59.524 55.000 6.32 0.00 0.00 5.36 F
1952 2116 0.734889 CAGCACATTTCGCCCTAAGG 59.265 55.000 0.00 0.00 0.00 2.69 F
3242 6992 0.593128 GCGACTGTGGCATCAAACTT 59.407 50.000 10.03 0.00 0.00 2.66 F
3624 7379 0.180171 CATGGTCAATCCGTGGGCTA 59.820 55.000 0.00 0.00 46.44 3.93 F
3744 7499 1.557371 TGTGAAGGTGGTGTTGAGACA 59.443 47.619 0.00 0.00 0.00 3.41 F
3745 7500 2.213499 GTGAAGGTGGTGTTGAGACAG 58.787 52.381 0.00 0.00 36.20 3.51 F
3867 7627 2.416701 CCTGCTGGTTTTCACGTTTTGT 60.417 45.455 0.51 0.00 0.00 2.83 F
5772 9687 3.707102 AGCCCTCCAACATACTACTTCTC 59.293 47.826 0.00 0.00 0.00 2.87 F
6847 11834 0.109272 TCATCAGCGAACTCACGGAC 60.109 55.000 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2024 0.250209 AAGCTCTGCCACTGAGTGTG 60.250 55.000 12.15 4.36 45.80 3.82 R
1912 2076 0.538057 CACCTGCAGCCCAGAAGAAA 60.538 55.000 8.66 0.00 44.64 2.52 R
2364 4547 0.109319 CCAGTGCCGGTTGTTATTGC 60.109 55.000 1.90 0.00 0.00 3.56 R
2670 6345 0.620556 TGTGCAGGGGGATTTCTCTC 59.379 55.000 0.00 0.00 0.00 3.20 R
2747 6468 5.543507 TTGGTAAGTACCTACAAAACCGA 57.456 39.130 8.91 0.00 46.58 4.69 R
3536 7291 0.166814 GCACAGACACGGCTGATTTC 59.833 55.000 6.96 0.00 39.20 2.17 R
4068 7851 2.553086 CATGGCCCATTTCCAAATTCG 58.447 47.619 0.00 0.00 37.13 3.34 R
4834 8671 3.821033 TCTTACCAGAAAGGAGCTTTTGC 59.179 43.478 0.00 0.00 43.41 3.68 R
5007 8844 5.146010 AGCTAGCTTATATGGCTTCACTC 57.854 43.478 12.68 0.00 40.74 3.51 R
5177 9014 7.706159 TCATCAAATTCCATAGCATACAACAC 58.294 34.615 0.00 0.00 0.00 3.32 R
5781 9696 6.183360 TGTGCCAATTTGCTGAATATCAGTAG 60.183 38.462 8.97 0.00 45.94 2.57 R
6949 11936 0.982704 AAGACATGTCCAGCTGCTCT 59.017 50.000 22.21 0.00 0.00 4.09 R
8160 13200 0.249120 TGGAGGTTGGTGAGTATGCG 59.751 55.000 0.00 0.00 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.520741 GAGAGGGCGAGGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
18 19 4.150454 AGAGGGCGAGGGAGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
23 24 3.403558 GCGAGGGAGGAGGCCTTT 61.404 66.667 6.77 0.00 31.76 3.11
24 25 2.586792 CGAGGGAGGAGGCCTTTG 59.413 66.667 6.77 0.00 31.76 2.77
25 26 3.002371 GAGGGAGGAGGCCTTTGG 58.998 66.667 6.77 0.00 31.76 3.28
26 27 2.615288 AGGGAGGAGGCCTTTGGG 60.615 66.667 6.77 0.00 31.76 4.12
36 37 4.740822 CCTTTGGGCCGGTGGAGG 62.741 72.222 1.90 0.00 0.00 4.30
44 45 4.899239 CCGGTGGAGGCAGATCGC 62.899 72.222 0.00 1.55 41.28 4.58
63 64 3.387947 CCCCGTGTCGCCTAGGTT 61.388 66.667 11.31 0.00 0.00 3.50
64 65 2.053865 CCCCGTGTCGCCTAGGTTA 61.054 63.158 11.31 0.00 0.00 2.85
65 66 1.436336 CCCGTGTCGCCTAGGTTAG 59.564 63.158 11.31 2.60 0.00 2.34
73 74 2.025727 CCTAGGTTAGGCGACGCG 59.974 66.667 14.61 3.53 39.48 6.01
74 75 2.025727 CTAGGTTAGGCGACGCGG 59.974 66.667 14.61 0.00 0.00 6.46
75 76 3.480225 CTAGGTTAGGCGACGCGGG 62.480 68.421 14.61 2.38 0.00 6.13
94 95 4.087892 CAGGGGGCTGAGTCCGTG 62.088 72.222 0.00 0.00 33.48 4.94
95 96 4.640690 AGGGGGCTGAGTCCGTGT 62.641 66.667 0.00 0.00 0.00 4.49
96 97 4.083862 GGGGGCTGAGTCCGTGTC 62.084 72.222 0.00 0.00 0.00 3.67
97 98 4.436998 GGGGCTGAGTCCGTGTCG 62.437 72.222 0.00 0.00 0.00 4.35
98 99 3.681835 GGGCTGAGTCCGTGTCGT 61.682 66.667 0.00 0.00 0.00 4.34
99 100 2.338015 GGGCTGAGTCCGTGTCGTA 61.338 63.158 0.00 0.00 0.00 3.43
100 101 1.664321 GGGCTGAGTCCGTGTCGTAT 61.664 60.000 0.00 0.00 0.00 3.06
101 102 0.248539 GGCTGAGTCCGTGTCGTATC 60.249 60.000 0.00 0.00 0.00 2.24
102 103 0.733729 GCTGAGTCCGTGTCGTATCT 59.266 55.000 0.00 0.00 0.00 1.98
103 104 1.132643 GCTGAGTCCGTGTCGTATCTT 59.867 52.381 0.00 0.00 0.00 2.40
104 105 2.786854 CTGAGTCCGTGTCGTATCTTG 58.213 52.381 0.00 0.00 0.00 3.02
105 106 1.471287 TGAGTCCGTGTCGTATCTTGG 59.529 52.381 0.00 0.00 0.00 3.61
106 107 0.815734 AGTCCGTGTCGTATCTTGGG 59.184 55.000 0.00 0.00 0.00 4.12
107 108 0.804933 GTCCGTGTCGTATCTTGGGC 60.805 60.000 0.00 0.00 0.00 5.36
108 109 1.876714 CCGTGTCGTATCTTGGGCG 60.877 63.158 0.00 0.00 0.00 6.13
109 110 2.514013 CGTGTCGTATCTTGGGCGC 61.514 63.158 0.00 0.00 0.00 6.53
110 111 1.447140 GTGTCGTATCTTGGGCGCA 60.447 57.895 10.83 0.00 0.00 6.09
111 112 1.017177 GTGTCGTATCTTGGGCGCAA 61.017 55.000 16.06 16.06 0.00 4.85
112 113 0.320858 TGTCGTATCTTGGGCGCAAA 60.321 50.000 17.59 8.94 0.00 3.68
113 114 0.373716 GTCGTATCTTGGGCGCAAAG 59.626 55.000 17.59 12.90 0.00 2.77
114 115 0.036765 TCGTATCTTGGGCGCAAAGT 60.037 50.000 17.59 10.98 0.00 2.66
115 116 1.205179 TCGTATCTTGGGCGCAAAGTA 59.795 47.619 17.59 10.03 0.00 2.24
116 117 1.326548 CGTATCTTGGGCGCAAAGTAC 59.673 52.381 17.59 18.81 0.00 2.73
117 118 2.629051 GTATCTTGGGCGCAAAGTACT 58.371 47.619 17.59 0.00 0.00 2.73
118 119 1.453155 ATCTTGGGCGCAAAGTACTG 58.547 50.000 17.59 4.82 0.00 2.74
119 120 1.210155 CTTGGGCGCAAAGTACTGC 59.790 57.895 17.59 0.00 39.04 4.40
120 121 1.514678 CTTGGGCGCAAAGTACTGCA 61.515 55.000 17.59 0.00 42.77 4.41
121 122 1.791103 TTGGGCGCAAAGTACTGCAC 61.791 55.000 14.56 0.00 42.77 4.57
122 123 2.561373 GGCGCAAAGTACTGCACC 59.439 61.111 10.83 0.00 42.77 5.01
123 124 2.561373 GCGCAAAGTACTGCACCC 59.439 61.111 0.30 0.00 42.77 4.61
124 125 2.860293 CGCAAAGTACTGCACCCG 59.140 61.111 0.00 0.00 42.77 5.28
125 126 2.677003 CGCAAAGTACTGCACCCGG 61.677 63.158 0.00 0.00 42.77 5.73
126 127 1.302192 GCAAAGTACTGCACCCGGA 60.302 57.895 0.73 0.00 42.17 5.14
127 128 0.676782 GCAAAGTACTGCACCCGGAT 60.677 55.000 0.73 0.00 42.17 4.18
128 129 1.086696 CAAAGTACTGCACCCGGATG 58.913 55.000 0.73 0.00 0.00 3.51
129 130 0.981183 AAAGTACTGCACCCGGATGA 59.019 50.000 0.00 0.00 0.00 2.92
130 131 0.537188 AAGTACTGCACCCGGATGAG 59.463 55.000 0.00 0.00 0.00 2.90
131 132 0.614979 AGTACTGCACCCGGATGAGT 60.615 55.000 0.00 2.68 0.00 3.41
132 133 0.179108 GTACTGCACCCGGATGAGTC 60.179 60.000 0.00 0.00 0.00 3.36
133 134 0.324368 TACTGCACCCGGATGAGTCT 60.324 55.000 0.00 0.00 0.00 3.24
134 135 0.324368 ACTGCACCCGGATGAGTCTA 60.324 55.000 0.00 0.00 0.00 2.59
135 136 1.043816 CTGCACCCGGATGAGTCTAT 58.956 55.000 0.00 0.00 0.00 1.98
136 137 2.239400 CTGCACCCGGATGAGTCTATA 58.761 52.381 0.00 0.00 0.00 1.31
137 138 2.828520 CTGCACCCGGATGAGTCTATAT 59.171 50.000 0.00 0.00 0.00 0.86
215 224 1.600638 CTCCTTTCCCCACCCGTAC 59.399 63.158 0.00 0.00 0.00 3.67
267 291 1.604593 GCCTCACAAGCACCACCAT 60.605 57.895 0.00 0.00 0.00 3.55
270 294 1.228521 TCACAAGCACCACCATGGG 60.229 57.895 18.09 4.89 43.37 4.00
271 295 1.531365 CACAAGCACCACCATGGGT 60.531 57.895 18.09 1.61 43.37 4.51
272 296 0.251121 CACAAGCACCACCATGGGTA 60.251 55.000 18.09 0.00 43.37 3.69
273 297 0.480690 ACAAGCACCACCATGGGTAA 59.519 50.000 18.09 0.00 43.37 2.85
278 302 2.089201 GCACCACCATGGGTAAGTAAC 58.911 52.381 18.09 0.12 43.37 2.50
281 305 4.510571 CACCACCATGGGTAAGTAACTAC 58.489 47.826 18.09 0.00 43.37 2.73
354 378 3.855858 CAGTCTCTTCTGCTTTCCCTAC 58.144 50.000 0.00 0.00 0.00 3.18
372 396 1.153289 CATCTGAGAACCAGCCCCG 60.153 63.158 0.00 0.00 42.62 5.73
394 418 0.612174 AGGTTCAGCTAGCGAGTGGA 60.612 55.000 9.55 0.00 0.00 4.02
395 419 0.246635 GGTTCAGCTAGCGAGTGGAA 59.753 55.000 9.55 6.87 0.00 3.53
396 420 1.337823 GGTTCAGCTAGCGAGTGGAAA 60.338 52.381 9.55 0.00 0.00 3.13
397 421 2.622436 GTTCAGCTAGCGAGTGGAAAT 58.378 47.619 9.55 0.00 0.00 2.17
398 422 3.003480 GTTCAGCTAGCGAGTGGAAATT 58.997 45.455 9.55 0.00 0.00 1.82
399 423 2.621338 TCAGCTAGCGAGTGGAAATTG 58.379 47.619 9.55 0.00 0.00 2.32
400 424 2.233676 TCAGCTAGCGAGTGGAAATTGA 59.766 45.455 9.55 0.17 0.00 2.57
401 425 3.002791 CAGCTAGCGAGTGGAAATTGAA 58.997 45.455 9.55 0.00 0.00 2.69
402 426 3.436704 CAGCTAGCGAGTGGAAATTGAAA 59.563 43.478 9.55 0.00 0.00 2.69
403 427 4.095483 CAGCTAGCGAGTGGAAATTGAAAT 59.905 41.667 9.55 0.00 0.00 2.17
404 428 4.095483 AGCTAGCGAGTGGAAATTGAAATG 59.905 41.667 9.55 0.00 0.00 2.32
405 429 3.221964 AGCGAGTGGAAATTGAAATGC 57.778 42.857 0.00 0.00 0.00 3.56
415 439 4.991687 GGAAATTGAAATGCCACGGTTAAA 59.008 37.500 0.00 0.00 0.00 1.52
431 455 5.009911 ACGGTTAAATTGTACTTTTGACCCC 59.990 40.000 20.10 6.68 38.71 4.95
470 494 6.926272 ACTAATTGAACCGCAGATTCTATCTC 59.074 38.462 0.00 0.00 37.58 2.75
475 499 3.741249 ACCGCAGATTCTATCTCGTAGA 58.259 45.455 0.00 0.00 37.58 2.59
482 506 7.168302 CGCAGATTCTATCTCGTAGATTGTTTT 59.832 37.037 3.27 0.00 39.14 2.43
483 507 8.821894 GCAGATTCTATCTCGTAGATTGTTTTT 58.178 33.333 3.27 0.00 39.14 1.94
520 627 7.676683 TGGAAATTAGTCCATCTAAGCTACT 57.323 36.000 0.00 0.00 42.97 2.57
635 742 4.019858 TCAGGGAGTTCAGATCTGTAGTG 58.980 47.826 21.92 10.94 0.00 2.74
662 769 7.044181 CAGATGTCCTTAGAATGAAACTGCTA 58.956 38.462 0.00 0.00 0.00 3.49
668 775 7.437862 GTCCTTAGAATGAAACTGCTAGATCTG 59.562 40.741 5.18 0.00 0.00 2.90
711 820 3.925090 GGATGGTACCCTCGCCCG 61.925 72.222 10.07 0.00 0.00 6.13
712 821 3.925090 GATGGTACCCTCGCCCGG 61.925 72.222 10.07 0.00 0.00 5.73
733 842 3.188965 GTCACCGACGGAGAGGAG 58.811 66.667 23.38 3.01 33.69 3.69
740 849 1.241990 CGACGGAGAGGAGTTGGACA 61.242 60.000 0.00 0.00 0.00 4.02
747 856 0.321122 GAGGAGTTGGACAGTGCTGG 60.321 60.000 4.11 0.00 34.19 4.85
754 863 1.302832 GGACAGTGCTGGTTCCTGG 60.303 63.158 4.11 0.00 34.19 4.45
772 881 1.299976 GTGGAGATTTCGGGCTGGT 59.700 57.895 0.00 0.00 0.00 4.00
826 935 8.088981 CACTAAGTCCATAGTAAAACTGTCACT 58.911 37.037 0.00 0.00 34.40 3.41
853 964 0.475906 AGAATGCTAGGACCATGCCC 59.524 55.000 6.32 0.00 0.00 5.36
990 1118 7.014422 GTGTATGTATAGAAGGTCCAAGCTAGT 59.986 40.741 0.00 0.00 0.00 2.57
1013 1141 4.752146 TGACATAACATGACTGCAGAGAG 58.248 43.478 23.35 9.58 0.00 3.20
1244 1384 4.353777 ACAATAGGAGAGAGGTTGCTGTA 58.646 43.478 0.00 0.00 0.00 2.74
1266 1406 5.689383 AAAGTTGCTTCATGTTGATACGT 57.311 34.783 0.00 0.00 0.00 3.57
1288 1428 2.271800 GCTAGGACTTGATGACCAACG 58.728 52.381 0.00 0.00 32.90 4.10
1815 1974 2.101249 CCGGTAAGTAGCCCGTGAAATA 59.899 50.000 0.00 0.00 42.67 1.40
1860 2024 9.950680 TCTTTTCTAATCGAATAAATGGAATGC 57.049 29.630 0.00 0.00 0.00 3.56
1894 2058 2.418083 GCTTGGGCTGAATTCCCCG 61.418 63.158 13.33 3.66 44.58 5.73
1895 2059 1.754234 CTTGGGCTGAATTCCCCGG 60.754 63.158 13.33 0.00 44.58 5.73
1896 2060 3.295386 TTGGGCTGAATTCCCCGGG 62.295 63.158 15.80 15.80 44.58 5.73
1897 2061 4.522975 GGGCTGAATTCCCCGGGG 62.523 72.222 35.80 35.80 37.81 5.73
1898 2062 4.522975 GGCTGAATTCCCCGGGGG 62.523 72.222 39.51 27.32 46.11 5.40
1899 2063 3.739613 GCTGAATTCCCCGGGGGT 61.740 66.667 39.51 25.35 44.74 4.95
1900 2064 2.275418 CTGAATTCCCCGGGGGTG 59.725 66.667 39.51 14.99 44.74 4.61
1901 2065 3.343326 TGAATTCCCCGGGGGTGG 61.343 66.667 39.51 14.57 44.74 4.61
1918 2082 2.443781 GGGGGTGGGGGTTTCTTC 59.556 66.667 0.00 0.00 0.00 2.87
1919 2083 2.167729 GGGGGTGGGGGTTTCTTCT 61.168 63.158 0.00 0.00 0.00 2.85
1920 2084 1.076727 GGGGTGGGGGTTTCTTCTG 59.923 63.158 0.00 0.00 0.00 3.02
1921 2085 1.076727 GGGTGGGGGTTTCTTCTGG 59.923 63.158 0.00 0.00 0.00 3.86
1922 2086 1.076727 GGTGGGGGTTTCTTCTGGG 59.923 63.158 0.00 0.00 0.00 4.45
1923 2087 1.606601 GTGGGGGTTTCTTCTGGGC 60.607 63.158 0.00 0.00 0.00 5.36
1924 2088 1.778383 TGGGGGTTTCTTCTGGGCT 60.778 57.895 0.00 0.00 0.00 5.19
1925 2089 1.304464 GGGGGTTTCTTCTGGGCTG 60.304 63.158 0.00 0.00 0.00 4.85
1926 2090 1.979155 GGGGTTTCTTCTGGGCTGC 60.979 63.158 0.00 0.00 0.00 5.25
1927 2091 1.228552 GGGTTTCTTCTGGGCTGCA 60.229 57.895 0.50 0.00 0.00 4.41
1952 2116 0.734889 CAGCACATTTCGCCCTAAGG 59.265 55.000 0.00 0.00 0.00 2.69
1960 2124 0.907704 TTCGCCCTAAGGAAGCTCCA 60.908 55.000 5.21 0.00 39.61 3.86
2214 2395 7.394077 TCATATAACAAACCAGCATATCATGGG 59.606 37.037 7.48 0.00 41.13 4.00
2415 4602 8.234546 CACTTTATTTATACGGAACCCATATGC 58.765 37.037 0.00 0.00 0.00 3.14
2426 4784 2.806434 ACCCATATGCAACTTGCTTCA 58.194 42.857 14.78 0.76 45.31 3.02
2456 4819 8.839310 ACAAAGATGGTAAGCACATATCTATC 57.161 34.615 0.00 0.00 32.78 2.08
2641 5718 9.416794 CAAGAATATAGCTTATATATGGGAGCG 57.583 37.037 0.00 0.00 39.99 5.03
2645 5722 8.713708 ATATAGCTTATATATGGGAGCGTCTT 57.286 34.615 0.00 0.00 39.99 3.01
2646 5723 5.078411 AGCTTATATATGGGAGCGTCTTG 57.922 43.478 0.00 0.00 39.99 3.02
2658 6329 3.729004 CGTCTTGACGCTTTTGACC 57.271 52.632 10.23 0.00 0.00 4.02
2670 6345 4.142004 ACGCTTTTGACCTAGTACCCATAG 60.142 45.833 0.00 0.00 0.00 2.23
2744 6465 6.096705 TGCCCACCTCAAATTATATTTCTGTG 59.903 38.462 0.00 0.00 0.00 3.66
2747 6468 8.531146 CCCACCTCAAATTATATTTCTGTGTTT 58.469 33.333 0.00 0.00 0.00 2.83
3027 6765 1.682854 ACAGTTGTTTCTGCACATGGG 59.317 47.619 0.00 0.00 38.84 4.00
3056 6802 5.347342 TGTTGTACAGTTTGCAAATCCTTG 58.653 37.500 16.21 13.43 30.79 3.61
3113 6860 9.387123 CAAAACTTACTCTCTGTATCTTTTTGC 57.613 33.333 0.00 0.00 33.22 3.68
3131 6878 2.906354 TGCTTCCTCGCTCTTTAATCC 58.094 47.619 0.00 0.00 0.00 3.01
3136 6883 3.861840 TCCTCGCTCTTTAATCCTTGTG 58.138 45.455 0.00 0.00 0.00 3.33
3192 6939 4.390909 AGGAACGTAAAAATTAGAGTGCGG 59.609 41.667 0.00 0.00 0.00 5.69
3242 6992 0.593128 GCGACTGTGGCATCAAACTT 59.407 50.000 10.03 0.00 0.00 2.66
3296 7047 1.078143 ATCGGAACAAGGAGGCTGC 60.078 57.895 0.00 0.00 0.00 5.25
3416 7171 1.535028 CATAGTTGCACGTGGCTTTGA 59.465 47.619 18.88 0.00 45.15 2.69
3418 7173 1.032014 AGTTGCACGTGGCTTTGATT 58.968 45.000 18.88 0.00 45.15 2.57
3436 7191 9.595823 GCTTTGATTGTGTATAAGGAGTACTAA 57.404 33.333 0.00 0.00 0.00 2.24
3497 7252 8.512138 AGTCATTGTAACTTGGTTGCTATAAAC 58.488 33.333 0.00 0.00 0.00 2.01
3525 7280 2.358898 GTGGCCCATGTAATAGCAACAG 59.641 50.000 0.00 0.00 31.00 3.16
3527 7282 1.956477 GCCCATGTAATAGCAACAGGG 59.044 52.381 0.11 0.11 45.97 4.45
3532 7287 1.912731 TGTAATAGCAACAGGGCTGGA 59.087 47.619 0.00 0.00 45.44 3.86
3533 7288 2.307392 TGTAATAGCAACAGGGCTGGAA 59.693 45.455 0.00 0.00 45.44 3.53
3534 7289 2.603075 AATAGCAACAGGGCTGGAAA 57.397 45.000 0.00 0.00 45.44 3.13
3535 7290 2.603075 ATAGCAACAGGGCTGGAAAA 57.397 45.000 0.00 0.00 45.44 2.29
3536 7291 1.909700 TAGCAACAGGGCTGGAAAAG 58.090 50.000 0.00 0.00 45.44 2.27
3537 7292 0.185901 AGCAACAGGGCTGGAAAAGA 59.814 50.000 0.00 0.00 43.89 2.52
3540 7295 2.037641 GCAACAGGGCTGGAAAAGAAAT 59.962 45.455 0.00 0.00 34.19 2.17
3541 7296 3.862264 GCAACAGGGCTGGAAAAGAAATC 60.862 47.826 0.00 0.00 34.19 2.17
3543 7298 3.160269 ACAGGGCTGGAAAAGAAATCAG 58.840 45.455 0.00 0.00 34.19 2.90
3601 7356 3.074412 ACCAAGTTCAATCTAGTTGCCG 58.926 45.455 0.00 0.00 37.74 5.69
3616 7371 0.463654 TGCCGTAGCATGGTCAATCC 60.464 55.000 0.00 0.00 46.52 3.01
3624 7379 0.180171 CATGGTCAATCCGTGGGCTA 59.820 55.000 0.00 0.00 46.44 3.93
3675 7430 2.291465 GCACTCTGTTGCATTCAGTTGA 59.709 45.455 15.67 1.32 42.49 3.18
3731 7486 2.012673 GCAGGCAAGTCTATGTGAAGG 58.987 52.381 0.00 0.00 0.00 3.46
3732 7487 2.616510 GCAGGCAAGTCTATGTGAAGGT 60.617 50.000 0.00 0.00 0.00 3.50
3733 7488 3.005554 CAGGCAAGTCTATGTGAAGGTG 58.994 50.000 0.00 0.00 0.00 4.00
3734 7489 2.026822 AGGCAAGTCTATGTGAAGGTGG 60.027 50.000 0.00 0.00 0.00 4.61
3735 7490 2.290323 GGCAAGTCTATGTGAAGGTGGT 60.290 50.000 0.00 0.00 0.00 4.16
3736 7491 2.744202 GCAAGTCTATGTGAAGGTGGTG 59.256 50.000 0.00 0.00 0.00 4.17
3737 7492 3.807209 GCAAGTCTATGTGAAGGTGGTGT 60.807 47.826 0.00 0.00 0.00 4.16
3738 7493 4.389374 CAAGTCTATGTGAAGGTGGTGTT 58.611 43.478 0.00 0.00 0.00 3.32
3739 7494 4.008074 AGTCTATGTGAAGGTGGTGTTG 57.992 45.455 0.00 0.00 0.00 3.33
3740 7495 3.646162 AGTCTATGTGAAGGTGGTGTTGA 59.354 43.478 0.00 0.00 0.00 3.18
3741 7496 3.997021 GTCTATGTGAAGGTGGTGTTGAG 59.003 47.826 0.00 0.00 0.00 3.02
3742 7497 3.901222 TCTATGTGAAGGTGGTGTTGAGA 59.099 43.478 0.00 0.00 0.00 3.27
3743 7498 2.325583 TGTGAAGGTGGTGTTGAGAC 57.674 50.000 0.00 0.00 0.00 3.36
3744 7499 1.557371 TGTGAAGGTGGTGTTGAGACA 59.443 47.619 0.00 0.00 0.00 3.41
3745 7500 2.213499 GTGAAGGTGGTGTTGAGACAG 58.787 52.381 0.00 0.00 36.20 3.51
3767 7522 6.933521 ACAGCAAAGATAGCCATTCTAGTATG 59.066 38.462 2.48 2.48 0.00 2.39
3769 7524 7.117523 CAGCAAAGATAGCCATTCTAGTATGTC 59.882 40.741 8.36 0.00 0.00 3.06
3770 7525 6.931281 GCAAAGATAGCCATTCTAGTATGTCA 59.069 38.462 8.36 0.00 0.00 3.58
3771 7526 7.095439 GCAAAGATAGCCATTCTAGTATGTCAC 60.095 40.741 8.36 0.00 0.00 3.67
3772 7527 7.603180 AAGATAGCCATTCTAGTATGTCACA 57.397 36.000 8.36 0.00 0.00 3.58
3779 7538 9.461312 AGCCATTCTAGTATGTCACATTTTTAA 57.539 29.630 0.00 0.00 0.00 1.52
3800 7559 3.665745 TTCAGGAAATGCTGCCTTTTC 57.334 42.857 13.64 13.64 35.50 2.29
3867 7627 2.416701 CCTGCTGGTTTTCACGTTTTGT 60.417 45.455 0.51 0.00 0.00 2.83
3868 7628 6.682949 TCCTGCTGGTTTTCACGTTTTGTG 62.683 45.833 9.73 0.00 41.31 3.33
3942 7724 5.896106 AGCATATCTATCCGGATCTTGATCA 59.104 40.000 23.08 11.74 0.00 2.92
4001 7784 9.046296 ACATTAAAAGTTTGACTAGACAGAGTG 57.954 33.333 0.00 0.00 0.00 3.51
4055 7838 7.065120 TGGAACAAAGATGGATGTGATTTTT 57.935 32.000 0.00 0.00 31.92 1.94
4068 7851 7.031975 GGATGTGATTTTTGATTCTGGACTTC 58.968 38.462 0.00 0.00 0.00 3.01
4380 8199 4.268797 TCAAATTTATTGCCTTGCAGCA 57.731 36.364 0.00 0.00 40.61 4.41
4834 8671 7.222872 ACCTTCAGATGATAGAAAATAGCCTG 58.777 38.462 0.00 0.00 0.00 4.85
5007 8844 3.922240 GCACATAAAATTCACACTGGCAG 59.078 43.478 14.16 14.16 0.00 4.85
5562 9423 7.322938 GCTTTTAGACATGTCCTTCGTTTTAAC 59.677 37.037 22.21 0.00 0.00 2.01
5567 9428 6.369065 AGACATGTCCTTCGTTTTAACATCTC 59.631 38.462 22.21 0.00 0.00 2.75
5772 9687 3.707102 AGCCCTCCAACATACTACTTCTC 59.293 47.826 0.00 0.00 0.00 2.87
5781 9696 8.088981 TCCAACATACTACTTCTCTTCTCAAAC 58.911 37.037 0.00 0.00 0.00 2.93
5953 9925 6.591062 GCCAAATGTTCACATGTTTATGTCAT 59.409 34.615 0.00 0.00 45.53 3.06
6057 10650 2.433239 GGGCCTTGAGATTAGTCGGTTA 59.567 50.000 0.84 0.00 0.00 2.85
6058 10651 3.071167 GGGCCTTGAGATTAGTCGGTTAT 59.929 47.826 0.84 0.00 0.00 1.89
6254 11128 5.703592 ACGTAATAACATGAAGGCTGTTTCA 59.296 36.000 0.00 0.00 41.00 2.69
6351 11242 2.202797 CCTGGTGCACGATCTCGG 60.203 66.667 11.45 0.12 44.95 4.63
6455 11346 6.908870 TTAAGTCATCAATGAATCCACTCG 57.091 37.500 0.00 0.00 38.75 4.18
6740 11727 1.071471 CAAGCACCACCGGAGTCTT 59.929 57.895 9.46 8.15 0.00 3.01
6836 11823 1.521010 CTGCCAGAGGTCATCAGCG 60.521 63.158 0.00 0.00 33.37 5.18
6847 11834 0.109272 TCATCAGCGAACTCACGGAC 60.109 55.000 0.00 0.00 0.00 4.79
6876 11863 8.461222 CCGGTATTTGAATATATCACATTGCAT 58.539 33.333 0.00 0.00 37.92 3.96
6949 11936 6.183361 ACTGTATCGGTACCCTTCCTAATCTA 60.183 42.308 6.25 0.00 0.00 1.98
6969 11956 1.066286 AGAGCAGCTGGACATGTCTTC 60.066 52.381 24.50 13.68 0.00 2.87
7204 12229 3.181329 TCCTGATGTGTTGGGTATCACT 58.819 45.455 0.00 0.00 35.82 3.41
7208 12233 5.163311 CCTGATGTGTTGGGTATCACTGATA 60.163 44.000 0.00 0.00 35.82 2.15
7250 12275 2.100916 GGAAGAGGCACGCAGTATAAGA 59.899 50.000 0.00 0.00 41.61 2.10
7256 12281 5.243954 AGAGGCACGCAGTATAAGATTGATA 59.756 40.000 0.00 0.00 41.61 2.15
7509 12534 1.203162 TCGTCCCACTACCCAACCTAA 60.203 52.381 0.00 0.00 0.00 2.69
7665 12690 1.477553 TAAACCGTGTCCGCCTAGAT 58.522 50.000 0.00 0.00 0.00 1.98
7685 12710 5.317808 AGATCAGTGTACTGGCGTATATCT 58.682 41.667 11.76 8.51 43.91 1.98
7705 12730 2.674852 CTCGTGCTGACAATGTGCTATT 59.325 45.455 0.00 0.00 0.00 1.73
7892 12926 2.202797 CCACAGATCACCCGAGCG 60.203 66.667 0.00 0.00 30.99 5.03
7937 12977 6.434652 TGGAATTTCGTAGCCTGGAAAAATTA 59.565 34.615 0.00 0.00 35.93 1.40
7976 13016 0.610174 TCACATCTCTTCGGCAGCTT 59.390 50.000 0.00 0.00 0.00 3.74
8020 13060 4.095483 CCTACAGGAATTGCATGAGAACAC 59.905 45.833 0.00 0.00 37.39 3.32
8160 13200 2.033424 GGCATCATTTCTTTACCGGAGC 59.967 50.000 9.46 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.520741 CTCCTCCCTCGCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
1 2 4.150454 CCTCCTCCCTCGCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
6 7 3.403558 AAAGGCCTCCTCCCTCGC 61.404 66.667 5.23 0.00 30.89 5.03
7 8 2.586792 CAAAGGCCTCCTCCCTCG 59.413 66.667 5.23 0.00 30.89 4.63
8 9 2.684499 CCCAAAGGCCTCCTCCCTC 61.684 68.421 5.23 0.00 30.89 4.30
9 10 2.615288 CCCAAAGGCCTCCTCCCT 60.615 66.667 5.23 0.00 30.89 4.20
19 20 4.740822 CCTCCACCGGCCCAAAGG 62.741 72.222 0.00 0.00 0.00 3.11
27 28 4.899239 GCGATCTGCCTCCACCGG 62.899 72.222 0.00 0.00 37.76 5.28
46 47 2.012902 CTAACCTAGGCGACACGGGG 62.013 65.000 9.30 0.00 0.00 5.73
47 48 1.436336 CTAACCTAGGCGACACGGG 59.564 63.158 9.30 0.00 0.00 5.28
48 49 1.436336 CCTAACCTAGGCGACACGG 59.564 63.158 9.30 0.00 39.48 4.94
57 58 2.025727 CCGCGTCGCCTAACCTAG 59.974 66.667 12.44 0.00 0.00 3.02
58 59 3.520862 CCCGCGTCGCCTAACCTA 61.521 66.667 12.44 0.00 0.00 3.08
77 78 4.087892 CACGGACTCAGCCCCCTG 62.088 72.222 0.00 0.00 40.54 4.45
78 79 4.640690 ACACGGACTCAGCCCCCT 62.641 66.667 0.00 0.00 0.00 4.79
79 80 4.083862 GACACGGACTCAGCCCCC 62.084 72.222 0.00 0.00 0.00 5.40
80 81 4.436998 CGACACGGACTCAGCCCC 62.437 72.222 0.00 0.00 0.00 5.80
81 82 1.664321 ATACGACACGGACTCAGCCC 61.664 60.000 0.00 0.00 0.00 5.19
82 83 0.248539 GATACGACACGGACTCAGCC 60.249 60.000 0.00 0.00 0.00 4.85
83 84 0.733729 AGATACGACACGGACTCAGC 59.266 55.000 0.00 0.00 0.00 4.26
84 85 2.478031 CCAAGATACGACACGGACTCAG 60.478 54.545 0.00 0.00 0.00 3.35
85 86 1.471287 CCAAGATACGACACGGACTCA 59.529 52.381 0.00 0.00 0.00 3.41
86 87 1.202268 CCCAAGATACGACACGGACTC 60.202 57.143 0.00 0.00 0.00 3.36
87 88 0.815734 CCCAAGATACGACACGGACT 59.184 55.000 0.00 0.00 0.00 3.85
88 89 0.804933 GCCCAAGATACGACACGGAC 60.805 60.000 0.00 0.00 0.00 4.79
89 90 1.514087 GCCCAAGATACGACACGGA 59.486 57.895 0.00 0.00 0.00 4.69
90 91 1.876714 CGCCCAAGATACGACACGG 60.877 63.158 0.00 0.00 0.00 4.94
91 92 2.514013 GCGCCCAAGATACGACACG 61.514 63.158 0.00 0.00 0.00 4.49
92 93 1.017177 TTGCGCCCAAGATACGACAC 61.017 55.000 4.18 0.00 0.00 3.67
93 94 0.320858 TTTGCGCCCAAGATACGACA 60.321 50.000 4.18 0.00 31.52 4.35
94 95 0.373716 CTTTGCGCCCAAGATACGAC 59.626 55.000 4.18 0.00 31.52 4.34
95 96 0.036765 ACTTTGCGCCCAAGATACGA 60.037 50.000 20.16 0.00 31.52 3.43
96 97 1.326548 GTACTTTGCGCCCAAGATACG 59.673 52.381 20.16 0.00 31.52 3.06
97 98 2.351726 CAGTACTTTGCGCCCAAGATAC 59.648 50.000 20.16 16.78 31.52 2.24
98 99 2.627945 CAGTACTTTGCGCCCAAGATA 58.372 47.619 20.16 8.38 31.52 1.98
99 100 1.453155 CAGTACTTTGCGCCCAAGAT 58.547 50.000 20.16 9.17 31.52 2.40
100 101 1.234615 GCAGTACTTTGCGCCCAAGA 61.235 55.000 20.16 4.53 33.90 3.02
101 102 1.210155 GCAGTACTTTGCGCCCAAG 59.790 57.895 4.18 10.10 33.90 3.61
102 103 1.791103 GTGCAGTACTTTGCGCCCAA 61.791 55.000 4.18 0.00 46.19 4.12
103 104 2.258013 GTGCAGTACTTTGCGCCCA 61.258 57.895 4.18 0.00 46.19 5.36
104 105 2.561373 GTGCAGTACTTTGCGCCC 59.439 61.111 4.18 0.00 46.19 6.13
108 109 0.676782 ATCCGGGTGCAGTACTTTGC 60.677 55.000 0.00 0.00 44.33 3.68
109 110 1.086696 CATCCGGGTGCAGTACTTTG 58.913 55.000 0.00 0.00 0.00 2.77
110 111 0.981183 TCATCCGGGTGCAGTACTTT 59.019 50.000 10.80 0.00 0.00 2.66
111 112 0.537188 CTCATCCGGGTGCAGTACTT 59.463 55.000 10.80 0.00 0.00 2.24
112 113 0.614979 ACTCATCCGGGTGCAGTACT 60.615 55.000 10.80 0.00 0.00 2.73
113 114 0.179108 GACTCATCCGGGTGCAGTAC 60.179 60.000 10.80 5.62 0.00 2.73
114 115 0.324368 AGACTCATCCGGGTGCAGTA 60.324 55.000 10.80 0.00 0.00 2.74
115 116 0.324368 TAGACTCATCCGGGTGCAGT 60.324 55.000 10.80 14.43 0.00 4.40
116 117 1.043816 ATAGACTCATCCGGGTGCAG 58.956 55.000 10.80 11.10 0.00 4.41
117 118 2.375014 TATAGACTCATCCGGGTGCA 57.625 50.000 10.80 0.00 0.00 4.57
118 119 3.511934 AGAATATAGACTCATCCGGGTGC 59.488 47.826 10.80 0.00 0.00 5.01
119 120 4.158764 GGAGAATATAGACTCATCCGGGTG 59.841 50.000 8.97 8.97 35.17 4.61
120 121 4.345854 GGAGAATATAGACTCATCCGGGT 58.654 47.826 0.00 0.00 35.17 5.28
121 122 3.702045 GGGAGAATATAGACTCATCCGGG 59.298 52.174 0.00 0.00 35.17 5.73
122 123 3.702045 GGGGAGAATATAGACTCATCCGG 59.298 52.174 0.00 0.00 35.17 5.14
123 124 4.400884 CAGGGGAGAATATAGACTCATCCG 59.599 50.000 9.94 0.00 35.14 4.18
124 125 4.714308 CCAGGGGAGAATATAGACTCATCC 59.286 50.000 9.94 9.95 35.17 3.51
125 126 4.161377 GCCAGGGGAGAATATAGACTCATC 59.839 50.000 9.94 3.62 35.17 2.92
126 127 4.100373 GCCAGGGGAGAATATAGACTCAT 58.900 47.826 9.94 0.00 35.17 2.90
127 128 3.511477 GCCAGGGGAGAATATAGACTCA 58.489 50.000 9.94 0.00 35.17 3.41
128 129 2.835156 GGCCAGGGGAGAATATAGACTC 59.165 54.545 0.00 0.00 0.00 3.36
129 130 2.456733 AGGCCAGGGGAGAATATAGACT 59.543 50.000 5.01 0.00 0.00 3.24
130 131 2.569404 CAGGCCAGGGGAGAATATAGAC 59.431 54.545 5.01 0.00 0.00 2.59
131 132 2.495383 CCAGGCCAGGGGAGAATATAGA 60.495 54.545 6.21 0.00 0.00 1.98
132 133 1.912043 CCAGGCCAGGGGAGAATATAG 59.088 57.143 6.21 0.00 0.00 1.31
133 134 1.225694 ACCAGGCCAGGGGAGAATATA 59.774 52.381 19.81 0.00 0.00 0.86
134 135 0.028642 ACCAGGCCAGGGGAGAATAT 60.029 55.000 19.81 0.00 0.00 1.28
135 136 0.988145 CACCAGGCCAGGGGAGAATA 60.988 60.000 19.81 0.00 32.15 1.75
136 137 2.128226 ACCAGGCCAGGGGAGAAT 59.872 61.111 19.81 0.00 0.00 2.40
137 138 2.935481 CACCAGGCCAGGGGAGAA 60.935 66.667 19.81 0.00 32.15 2.87
159 160 0.198696 AGGAAGAAAGGGGAAGGGGA 59.801 55.000 0.00 0.00 0.00 4.81
160 161 0.626382 GAGGAAGAAAGGGGAAGGGG 59.374 60.000 0.00 0.00 0.00 4.79
273 297 9.192642 GGAGGAGAAGAATAGAAAGTAGTTACT 57.807 37.037 0.00 0.00 38.39 2.24
278 302 5.305902 GGGGGAGGAGAAGAATAGAAAGTAG 59.694 48.000 0.00 0.00 0.00 2.57
281 305 4.302930 AGGGGGAGGAGAAGAATAGAAAG 58.697 47.826 0.00 0.00 0.00 2.62
298 322 0.758310 GACCGTTCCTACCTAGGGGG 60.758 65.000 14.81 14.74 43.79 5.40
348 372 2.111384 GCTGGTTCTCAGATGTAGGGA 58.889 52.381 0.00 0.00 46.18 4.20
351 375 1.139853 GGGGCTGGTTCTCAGATGTAG 59.860 57.143 0.00 0.00 46.18 2.74
354 378 1.153289 CGGGGCTGGTTCTCAGATG 60.153 63.158 0.00 0.00 46.18 2.90
372 396 1.520342 CTCGCTAGCTGAACCTGCC 60.520 63.158 13.93 0.00 0.00 4.85
394 418 6.484977 ACAATTTAACCGTGGCATTTCAATTT 59.515 30.769 0.00 0.00 0.00 1.82
395 419 5.994668 ACAATTTAACCGTGGCATTTCAATT 59.005 32.000 0.00 0.00 0.00 2.32
396 420 5.546526 ACAATTTAACCGTGGCATTTCAAT 58.453 33.333 0.00 0.00 0.00 2.57
397 421 4.950050 ACAATTTAACCGTGGCATTTCAA 58.050 34.783 0.00 0.00 0.00 2.69
398 422 4.592485 ACAATTTAACCGTGGCATTTCA 57.408 36.364 0.00 0.00 0.00 2.69
399 423 5.705902 AGTACAATTTAACCGTGGCATTTC 58.294 37.500 0.00 0.00 0.00 2.17
400 424 5.715434 AGTACAATTTAACCGTGGCATTT 57.285 34.783 0.00 0.00 0.00 2.32
401 425 5.715434 AAGTACAATTTAACCGTGGCATT 57.285 34.783 0.00 0.00 0.00 3.56
402 426 5.715434 AAAGTACAATTTAACCGTGGCAT 57.285 34.783 0.00 0.00 0.00 4.40
403 427 5.067413 TCAAAAGTACAATTTAACCGTGGCA 59.933 36.000 0.00 0.00 0.00 4.92
404 428 5.400188 GTCAAAAGTACAATTTAACCGTGGC 59.600 40.000 0.00 0.00 0.00 5.01
405 429 5.916320 GGTCAAAAGTACAATTTAACCGTGG 59.084 40.000 0.00 0.00 0.00 4.94
415 439 1.883926 GTGCGGGGTCAAAAGTACAAT 59.116 47.619 0.00 0.00 0.00 2.71
431 455 3.371898 TCAATTAGTGAATCTGCAGTGCG 59.628 43.478 14.67 5.62 31.51 5.34
454 478 3.741249 TCTACGAGATAGAATCTGCGGT 58.259 45.455 0.00 0.00 40.38 5.68
456 480 5.694816 ACAATCTACGAGATAGAATCTGCG 58.305 41.667 0.00 1.60 43.33 5.18
483 507 9.455144 TGGACTAATTTCCATAGGATTAAGGTA 57.545 33.333 0.00 0.00 41.00 3.08
484 508 8.344939 TGGACTAATTTCCATAGGATTAAGGT 57.655 34.615 0.00 0.00 41.00 3.50
510 617 6.494952 CATAGGGATTAGGGAGTAGCTTAGA 58.505 44.000 0.00 0.00 0.00 2.10
520 627 6.606241 ACAAATTTCCATAGGGATTAGGGA 57.394 37.500 0.00 0.00 44.48 4.20
607 714 4.222588 CAGATCTGAACTCCCTGAACTCTT 59.777 45.833 18.34 0.00 0.00 2.85
635 742 5.065731 CAGTTTCATTCTAAGGACATCTGGC 59.934 44.000 0.00 0.00 0.00 4.85
641 748 6.605471 TCTAGCAGTTTCATTCTAAGGACA 57.395 37.500 0.00 0.00 0.00 4.02
725 834 0.036858 GCACTGTCCAACTCCTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
733 842 0.179018 AGGAACCAGCACTGTCCAAC 60.179 55.000 9.29 0.00 30.57 3.77
740 849 1.770110 TCCACCAGGAACCAGCACT 60.770 57.895 0.00 0.00 42.23 4.40
747 856 1.679032 CCCGAAATCTCCACCAGGAAC 60.679 57.143 0.00 0.00 45.19 3.62
754 863 0.744771 GACCAGCCCGAAATCTCCAC 60.745 60.000 0.00 0.00 0.00 4.02
772 881 2.305927 GTGAGATCAAGTTCTTGGGGGA 59.694 50.000 11.82 0.00 0.00 4.81
826 935 2.111384 GTCCTAGCATTCTGACCCTCA 58.889 52.381 0.00 0.00 0.00 3.86
853 964 6.534934 GGCGTGAGAAGAAATAGTTTAACAG 58.465 40.000 0.00 0.00 0.00 3.16
990 1118 5.151297 TCTCTGCAGTCATGTTATGTCAA 57.849 39.130 14.67 0.00 0.00 3.18
1150 1285 5.441500 TGGGTCATTTGTTGTTAGTTCTGA 58.558 37.500 0.00 0.00 0.00 3.27
1201 1339 5.626142 TGTAAACTCCCTGCTTGACATAAA 58.374 37.500 0.00 0.00 0.00 1.40
1244 1384 5.689383 ACGTATCAACATGAAGCAACTTT 57.311 34.783 0.00 0.00 0.00 2.66
1266 1406 3.674997 GTTGGTCATCAAGTCCTAGCAA 58.325 45.455 0.00 0.00 35.80 3.91
1647 1804 5.181009 TGACAAATTTGTGGTTTGCATTCA 58.819 33.333 27.85 12.41 42.43 2.57
1859 2023 2.323580 GCTCTGCCACTGAGTGTGC 61.324 63.158 12.15 14.37 44.92 4.57
1860 2024 0.250209 AAGCTCTGCCACTGAGTGTG 60.250 55.000 12.15 4.36 45.80 3.82
1901 2065 2.167729 AGAAGAAACCCCCACCCCC 61.168 63.158 0.00 0.00 0.00 5.40
1902 2066 1.076727 CAGAAGAAACCCCCACCCC 59.923 63.158 0.00 0.00 0.00 4.95
1906 2070 1.778383 AGCCCAGAAGAAACCCCCA 60.778 57.895 0.00 0.00 0.00 4.96
1912 2076 0.538057 CACCTGCAGCCCAGAAGAAA 60.538 55.000 8.66 0.00 44.64 2.52
1913 2077 1.073722 CACCTGCAGCCCAGAAGAA 59.926 57.895 8.66 0.00 44.64 2.52
1914 2078 2.752358 CACCTGCAGCCCAGAAGA 59.248 61.111 8.66 0.00 44.64 2.87
1915 2079 2.360852 CCACCTGCAGCCCAGAAG 60.361 66.667 8.66 0.00 44.64 2.85
1916 2080 4.666253 GCCACCTGCAGCCCAGAA 62.666 66.667 8.66 0.00 44.64 3.02
1925 2089 1.080298 GAAATGTGCTGCCACCTGC 60.080 57.895 0.00 0.00 41.35 4.85
1926 2090 1.210931 CGAAATGTGCTGCCACCTG 59.789 57.895 0.00 0.00 41.35 4.00
1927 2091 2.629656 GCGAAATGTGCTGCCACCT 61.630 57.895 0.00 0.00 41.35 4.00
1952 2116 1.618837 TGTAGACACTGGTGGAGCTTC 59.381 52.381 5.70 0.00 34.19 3.86
2348 4531 0.250124 TTGCACAGGTGGACCTAACG 60.250 55.000 0.00 0.00 46.65 3.18
2364 4547 0.109319 CCAGTGCCGGTTGTTATTGC 60.109 55.000 1.90 0.00 0.00 3.56
2426 4784 3.573538 TGTGCTTACCATCTTTGTTGCAT 59.426 39.130 0.00 0.00 0.00 3.96
2499 4876 3.989817 CCTTGTACTTGCTCAAAAATGCC 59.010 43.478 0.00 0.00 0.00 4.40
2641 5718 3.391049 ACTAGGTCAAAAGCGTCAAGAC 58.609 45.455 0.00 0.00 0.00 3.01
2645 5722 2.028748 GGGTACTAGGTCAAAAGCGTCA 60.029 50.000 0.00 0.00 0.00 4.35
2646 5723 2.028748 TGGGTACTAGGTCAAAAGCGTC 60.029 50.000 0.00 0.00 0.00 5.19
2658 6329 5.717654 GGGGATTTCTCTCTATGGGTACTAG 59.282 48.000 0.00 0.00 0.00 2.57
2670 6345 0.620556 TGTGCAGGGGGATTTCTCTC 59.379 55.000 0.00 0.00 0.00 3.20
2744 6465 5.757808 TGGTAAGTACCTACAAAACCGAAAC 59.242 40.000 8.91 0.00 46.58 2.78
2747 6468 5.543507 TTGGTAAGTACCTACAAAACCGA 57.456 39.130 8.91 0.00 46.58 4.69
3056 6802 4.937201 AACAAAATGACTGGGAAAGGAC 57.063 40.909 0.00 0.00 0.00 3.85
3113 6860 4.331168 CACAAGGATTAAAGAGCGAGGAAG 59.669 45.833 0.00 0.00 0.00 3.46
3192 6939 2.726241 GCAAGGCACGATTTTGAACTTC 59.274 45.455 0.00 0.00 0.00 3.01
3224 6973 2.146342 AGAAGTTTGATGCCACAGTCG 58.854 47.619 0.00 0.00 0.00 4.18
3242 6992 1.043116 CCCGTCAGGTGCCTCATAGA 61.043 60.000 0.00 0.00 35.12 1.98
3264 7015 2.294449 TCCGATCACCCTATCCTCTG 57.706 55.000 0.00 0.00 0.00 3.35
3325 7076 3.118738 ACCTCACGTTTTCTGACTCAACT 60.119 43.478 0.00 0.00 0.00 3.16
3326 7077 3.195661 ACCTCACGTTTTCTGACTCAAC 58.804 45.455 0.00 0.00 0.00 3.18
3416 7171 8.358148 CACGGATTAGTACTCCTTATACACAAT 58.642 37.037 0.00 0.00 0.00 2.71
3418 7173 7.056006 TCACGGATTAGTACTCCTTATACACA 58.944 38.462 0.00 0.00 0.00 3.72
3439 7194 3.440173 ACAAGGTTTGCTAATCCATCACG 59.560 43.478 0.00 0.00 0.00 4.35
3454 7209 6.266103 ACAATGACTCAATGATCAACAAGGTT 59.734 34.615 0.00 0.00 0.00 3.50
3497 7252 2.214376 TTACATGGGCCACTCCTTTG 57.786 50.000 9.28 4.32 34.39 2.77
3525 7280 2.662006 GCTGATTTCTTTTCCAGCCC 57.338 50.000 0.00 0.00 44.39 5.19
3532 7287 3.003689 CACAGACACGGCTGATTTCTTTT 59.996 43.478 6.96 0.00 39.20 2.27
3533 7288 2.549754 CACAGACACGGCTGATTTCTTT 59.450 45.455 6.96 0.00 39.20 2.52
3534 7289 2.146342 CACAGACACGGCTGATTTCTT 58.854 47.619 6.96 0.00 39.20 2.52
3535 7290 1.800805 CACAGACACGGCTGATTTCT 58.199 50.000 6.96 0.00 39.20 2.52
3536 7291 0.166814 GCACAGACACGGCTGATTTC 59.833 55.000 6.96 0.00 39.20 2.17
3537 7292 1.568612 CGCACAGACACGGCTGATTT 61.569 55.000 6.96 0.00 39.20 2.17
3540 7295 3.439513 AACGCACAGACACGGCTGA 62.440 57.895 6.96 0.00 39.20 4.26
3541 7296 2.967076 AACGCACAGACACGGCTG 60.967 61.111 0.00 0.00 41.63 4.85
3543 7298 3.269347 ACAACGCACAGACACGGC 61.269 61.111 0.00 0.00 0.00 5.68
3601 7356 1.299541 CCACGGATTGACCATGCTAC 58.700 55.000 0.00 0.00 38.90 3.58
3616 7371 1.067915 CCATGTTGGTTTTAGCCCACG 60.068 52.381 0.00 0.00 31.35 4.94
3624 7379 0.894835 GATCCGCCCATGTTGGTTTT 59.105 50.000 0.00 0.00 35.17 2.43
3675 7430 6.149474 CACCTTCACCGATTCAATTAAGTTCT 59.851 38.462 0.00 0.00 0.00 3.01
3731 7486 2.288666 TCTTTGCTGTCTCAACACCAC 58.711 47.619 0.00 0.00 0.00 4.16
3732 7487 2.708216 TCTTTGCTGTCTCAACACCA 57.292 45.000 0.00 0.00 0.00 4.17
3733 7488 3.126000 GCTATCTTTGCTGTCTCAACACC 59.874 47.826 0.00 0.00 0.00 4.16
3734 7489 3.126000 GGCTATCTTTGCTGTCTCAACAC 59.874 47.826 0.00 0.00 0.00 3.32
3735 7490 3.244526 TGGCTATCTTTGCTGTCTCAACA 60.245 43.478 0.00 0.00 0.00 3.33
3736 7491 3.338249 TGGCTATCTTTGCTGTCTCAAC 58.662 45.455 0.00 0.00 0.00 3.18
3737 7492 3.701205 TGGCTATCTTTGCTGTCTCAA 57.299 42.857 0.00 0.00 0.00 3.02
3738 7493 3.920231 ATGGCTATCTTTGCTGTCTCA 57.080 42.857 0.00 0.00 0.00 3.27
3739 7494 4.450053 AGAATGGCTATCTTTGCTGTCTC 58.550 43.478 0.00 0.00 0.00 3.36
3740 7495 4.500499 AGAATGGCTATCTTTGCTGTCT 57.500 40.909 0.00 0.00 0.00 3.41
3741 7496 5.363939 ACTAGAATGGCTATCTTTGCTGTC 58.636 41.667 0.00 0.00 0.00 3.51
3742 7497 5.365021 ACTAGAATGGCTATCTTTGCTGT 57.635 39.130 0.00 0.00 0.00 4.40
3743 7498 6.933521 ACATACTAGAATGGCTATCTTTGCTG 59.066 38.462 0.00 0.00 0.00 4.41
3744 7499 7.072263 ACATACTAGAATGGCTATCTTTGCT 57.928 36.000 0.00 0.00 0.00 3.91
3745 7500 6.931281 TGACATACTAGAATGGCTATCTTTGC 59.069 38.462 0.00 0.00 35.76 3.68
3746 7501 7.928167 TGTGACATACTAGAATGGCTATCTTTG 59.072 37.037 0.00 0.00 35.76 2.77
3747 7502 8.023021 TGTGACATACTAGAATGGCTATCTTT 57.977 34.615 0.00 0.00 35.76 2.52
3748 7503 7.603180 TGTGACATACTAGAATGGCTATCTT 57.397 36.000 0.00 0.00 35.76 2.40
3749 7504 7.789202 ATGTGACATACTAGAATGGCTATCT 57.211 36.000 0.00 0.00 35.76 1.98
3750 7505 8.839310 AAATGTGACATACTAGAATGGCTATC 57.161 34.615 0.00 0.00 35.76 2.08
3751 7506 9.632638 AAAAATGTGACATACTAGAATGGCTAT 57.367 29.630 0.00 0.00 35.76 2.97
3753 7508 7.944729 AAAAATGTGACATACTAGAATGGCT 57.055 32.000 0.00 0.00 35.76 4.75
3767 7522 8.437742 CAGCATTTCCTGAATTAAAAATGTGAC 58.562 33.333 8.89 0.00 39.90 3.67
3769 7524 7.238571 GCAGCATTTCCTGAATTAAAAATGTG 58.761 34.615 8.89 7.50 39.90 3.21
3770 7525 6.372381 GGCAGCATTTCCTGAATTAAAAATGT 59.628 34.615 8.89 0.00 39.90 2.71
3771 7526 6.596497 AGGCAGCATTTCCTGAATTAAAAATG 59.404 34.615 0.00 4.40 40.43 2.32
3772 7527 6.714278 AGGCAGCATTTCCTGAATTAAAAAT 58.286 32.000 0.00 0.00 34.77 1.82
3779 7538 3.836562 AGAAAAGGCAGCATTTCCTGAAT 59.163 39.130 5.32 0.00 36.44 2.57
3800 7559 3.745975 TGAAAATGACGTGCACCTTAGAG 59.254 43.478 12.15 0.00 0.00 2.43
3867 7627 6.959639 AGGTTTTGATTAAAGTGCTCTTCA 57.040 33.333 0.74 0.00 32.90 3.02
3868 7628 7.652727 AGAAGGTTTTGATTAAAGTGCTCTTC 58.347 34.615 0.74 0.00 32.90 2.87
3942 7724 7.935755 ACATGGAAAGATCAGACGAATTATCAT 59.064 33.333 0.00 0.00 0.00 2.45
4001 7784 3.535280 TGGCAAACCTTCAGGAAAAAC 57.465 42.857 0.00 0.00 38.94 2.43
4055 7838 4.905429 TCCAAATTCGAAGTCCAGAATCA 58.095 39.130 3.35 0.00 36.20 2.57
4068 7851 2.553086 CATGGCCCATTTCCAAATTCG 58.447 47.619 0.00 0.00 37.13 3.34
4195 8006 5.372547 GGGTAATTTCGCCCTTTGATATC 57.627 43.478 0.00 0.00 41.63 1.63
4380 8199 2.827921 GGAACACTGATTTGAGGGCAAT 59.172 45.455 0.00 0.00 33.25 3.56
4834 8671 3.821033 TCTTACCAGAAAGGAGCTTTTGC 59.179 43.478 0.00 0.00 43.41 3.68
5007 8844 5.146010 AGCTAGCTTATATGGCTTCACTC 57.854 43.478 12.68 0.00 40.74 3.51
5177 9014 7.706159 TCATCAAATTCCATAGCATACAACAC 58.294 34.615 0.00 0.00 0.00 3.32
5753 9639 6.378564 TGAGAAGAGAAGTAGTATGTTGGAGG 59.621 42.308 0.00 0.00 0.00 4.30
5772 9687 8.484641 TTGCTGAATATCAGTAGTTTGAGAAG 57.515 34.615 8.97 0.00 45.94 2.85
5781 9696 6.183360 TGTGCCAATTTGCTGAATATCAGTAG 60.183 38.462 8.97 0.00 45.94 2.57
5919 9891 6.991531 ACATGTGAACATTTGGCTTGTAATTT 59.008 30.769 0.00 0.00 33.61 1.82
5920 9892 6.523840 ACATGTGAACATTTGGCTTGTAATT 58.476 32.000 0.00 0.00 33.61 1.40
5922 9894 5.528043 ACATGTGAACATTTGGCTTGTAA 57.472 34.783 0.00 0.00 33.61 2.41
5953 9925 4.388499 GCAAAGCCGGTCCCTCGA 62.388 66.667 1.90 0.00 0.00 4.04
6006 10599 6.044046 TGACAAGTAAACTTCTTAACTGCGA 58.956 36.000 0.00 0.00 33.11 5.10
6455 11346 6.973843 TCATTGATGACATAAATAGCTTGGC 58.026 36.000 0.00 0.00 0.00 4.52
6487 11378 5.484173 TTGATGACTTAAATAGCTTGGCG 57.516 39.130 0.00 0.00 0.00 5.69
6740 11727 3.434453 CCCAGGGCTTTCGGTATCAATAA 60.434 47.826 0.00 0.00 0.00 1.40
6847 11834 8.668353 CAATGTGATATATTCAAATACCGGAGG 58.332 37.037 9.46 0.00 46.47 4.30
6876 11863 7.596407 TGGGATGTCCAATAAATAATAACCCA 58.404 34.615 0.00 0.00 43.84 4.51
6949 11936 0.982704 AAGACATGTCCAGCTGCTCT 59.017 50.000 22.21 0.00 0.00 4.09
6969 11956 9.314321 CAGGTACACAGAAACCATAGTTATTAG 57.686 37.037 0.00 0.00 38.30 1.73
7086 12073 2.626840 GGAACAACAAGCCAAAAAGCA 58.373 42.857 0.00 0.00 34.23 3.91
7204 12229 4.935205 CGGACCTCACATTTTCAAGTATCA 59.065 41.667 0.00 0.00 0.00 2.15
7208 12233 2.878406 CACGGACCTCACATTTTCAAGT 59.122 45.455 0.00 0.00 0.00 3.16
7283 12308 2.743928 CCTCCGCTCCACTGCAAC 60.744 66.667 0.00 0.00 0.00 4.17
7425 12450 7.106239 TCCAAACTCACAAGATTAGGAAGATC 58.894 38.462 0.00 0.00 0.00 2.75
7509 12534 5.564259 GCATGTTGCTGAGAACAATCTTTCT 60.564 40.000 0.00 0.00 40.96 2.52
7665 12690 3.497262 CGAGATATACGCCAGTACACTGA 59.503 47.826 10.96 0.00 46.59 3.41
7685 12710 2.385013 ATAGCACATTGTCAGCACGA 57.615 45.000 0.00 0.00 0.00 4.35
7705 12730 1.679311 GCACACTCTCCCCATGACA 59.321 57.895 0.00 0.00 0.00 3.58
7892 12926 1.550976 AGTGATTCGAGGGAGGTGAAC 59.449 52.381 0.00 0.00 0.00 3.18
7952 12992 0.529555 GCCGAAGAGATGTGAGCTCC 60.530 60.000 12.15 3.09 32.82 4.70
7976 13016 8.994500 TGTAGGTGGTGGATGAATATTAAGTTA 58.006 33.333 0.00 0.00 0.00 2.24
8160 13200 0.249120 TGGAGGTTGGTGAGTATGCG 59.751 55.000 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.