Multiple sequence alignment - TraesCS6B01G116700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G116700 chr6B 100.000 6074 0 0 1 6074 103704161 103698088 0.000000e+00 11217.0
1 TraesCS6B01G116700 chr6B 99.335 1353 8 1 1738 3090 103293329 103291978 0.000000e+00 2447.0
2 TraesCS6B01G116700 chr6B 95.256 527 23 1 5343 5867 114108204 114107678 0.000000e+00 833.0
3 TraesCS6B01G116700 chr6B 86.392 632 81 5 1001 1629 17958982 17959611 0.000000e+00 686.0
4 TraesCS6B01G116700 chr6B 87.195 492 56 4 4589 5075 17960129 17960618 2.470000e-153 553.0
5 TraesCS6B01G116700 chr6B 97.333 150 4 0 3669 3818 680405575 680405724 7.810000e-64 255.0
6 TraesCS6B01G116700 chr6B 94.400 125 7 0 3273 3397 563489351 563489227 6.210000e-45 193.0
7 TraesCS6B01G116700 chr3A 98.749 1359 13 3 1735 3090 137588976 137590333 0.000000e+00 2412.0
8 TraesCS6B01G116700 chr3A 88.664 247 13 3 2275 2521 544398786 544398555 2.770000e-73 287.0
9 TraesCS6B01G116700 chr3A 97.260 146 4 0 3669 3814 332409223 332409078 1.310000e-61 248.0
10 TraesCS6B01G116700 chr3A 95.161 124 6 0 3270 3393 702912133 702912256 4.800000e-46 196.0
11 TraesCS6B01G116700 chr5B 98.602 1359 15 2 1738 3093 111912026 111910669 0.000000e+00 2401.0
12 TraesCS6B01G116700 chr5B 96.023 528 18 2 5343 5867 499079552 499079025 0.000000e+00 856.0
13 TraesCS6B01G116700 chr5B 94.886 528 25 1 5342 5867 711956576 711956049 0.000000e+00 824.0
14 TraesCS6B01G116700 chr5B 93.738 527 30 2 5343 5867 465801532 465802057 0.000000e+00 787.0
15 TraesCS6B01G116700 chr5B 92.817 529 33 3 5343 5867 684163659 684163132 0.000000e+00 761.0
16 TraesCS6B01G116700 chr5B 89.597 596 56 6 1 594 394211552 394212143 0.000000e+00 752.0
17 TraesCS6B01G116700 chr5B 89.280 597 58 6 1 594 83557990 83557397 0.000000e+00 743.0
18 TraesCS6B01G116700 chr5B 90.476 483 31 3 2260 2742 335041816 335042283 1.860000e-174 623.0
19 TraesCS6B01G116700 chr5B 95.833 336 12 2 2756 3090 335042777 335043111 5.360000e-150 542.0
20 TraesCS6B01G116700 chr5B 96.711 152 4 1 3666 3816 221096688 221096839 1.010000e-62 252.0
21 TraesCS6B01G116700 chr5B 94.355 124 7 0 3277 3400 79817876 79817999 2.230000e-44 191.0
22 TraesCS6B01G116700 chr7A 98.597 1354 17 1 1739 3090 460587063 460588416 0.000000e+00 2394.0
23 TraesCS6B01G116700 chr7A 88.337 403 39 4 1255 1651 677850251 677849851 1.530000e-130 477.0
24 TraesCS6B01G116700 chr7A 77.457 519 99 18 1126 1630 609339863 609339349 1.660000e-75 294.0
25 TraesCS6B01G116700 chr6A 98.594 1351 18 1 1740 3090 555815286 555813937 0.000000e+00 2388.0
26 TraesCS6B01G116700 chr6A 91.625 1206 58 20 4166 5340 53501959 53503152 0.000000e+00 1628.0
27 TraesCS6B01G116700 chr6A 91.457 995 34 26 761 1711 53499999 53500986 0.000000e+00 1319.0
28 TraesCS6B01G116700 chr6A 91.837 147 10 2 3392 3537 53501199 53501344 2.870000e-48 204.0
29 TraesCS6B01G116700 chr6A 93.617 94 4 1 676 769 53494371 53494462 8.210000e-29 139.0
30 TraesCS6B01G116700 chr6A 90.426 94 4 1 5864 5952 53503146 53503239 1.070000e-22 119.0
31 TraesCS6B01G116700 chr6A 86.441 59 4 3 3548 3606 88606748 88606802 1.830000e-05 62.1
32 TraesCS6B01G116700 chr2B 96.727 1375 13 14 1727 3099 688476872 688478216 0.000000e+00 2261.0
33 TraesCS6B01G116700 chr2B 89.356 714 64 10 921 1629 52689325 52690031 0.000000e+00 887.0
34 TraesCS6B01G116700 chr2B 94.981 538 23 3 5333 5867 68291 67755 0.000000e+00 841.0
35 TraesCS6B01G116700 chr2B 90.708 452 42 0 4623 5074 52690100 52690551 2.420000e-168 603.0
36 TraesCS6B01G116700 chr2B 97.297 148 4 0 3669 3816 704908333 704908186 1.010000e-62 252.0
37 TraesCS6B01G116700 chr2B 94.488 127 7 0 3277 3403 113275159 113275285 4.800000e-46 196.0
38 TraesCS6B01G116700 chr2B 80.128 156 19 6 5913 6066 183656237 183656382 8.330000e-19 106.0
39 TraesCS6B01G116700 chr2B 79.012 162 22 7 5913 6074 679070183 679070332 3.870000e-17 100.0
40 TraesCS6B01G116700 chr2A 93.264 1351 64 7 1740 3088 155830549 155831874 0.000000e+00 1965.0
41 TraesCS6B01G116700 chr2A 91.759 631 51 1 1000 1629 34295258 34294628 0.000000e+00 876.0
42 TraesCS6B01G116700 chr2A 92.035 452 36 0 4623 5074 34294561 34294110 2.390000e-178 636.0
43 TraesCS6B01G116700 chr2A 95.238 126 5 1 3274 3399 26851671 26851547 1.340000e-46 198.0
44 TraesCS6B01G116700 chr2A 81.212 165 18 7 5913 6074 136337997 136338151 2.970000e-23 121.0
45 TraesCS6B01G116700 chr1A 93.063 1355 65 11 1740 3091 94507865 94506537 0.000000e+00 1954.0
46 TraesCS6B01G116700 chr1A 86.022 93 12 1 5982 6074 296938600 296938509 1.390000e-16 99.0
47 TraesCS6B01G116700 chr6D 92.699 1082 27 17 667 1711 43050303 43051369 0.000000e+00 1513.0
48 TraesCS6B01G116700 chr6D 90.059 1016 44 20 4355 5340 43052314 43053302 0.000000e+00 1264.0
49 TraesCS6B01G116700 chr6D 89.000 600 58 8 1 594 365332435 365333032 0.000000e+00 736.0
50 TraesCS6B01G116700 chr6D 92.994 157 9 2 3829 3984 43051771 43051926 1.700000e-55 228.0
51 TraesCS6B01G116700 chr6D 86.854 213 17 5 5864 6074 43053296 43053499 1.700000e-55 228.0
52 TraesCS6B01G116700 chr6D 93.805 113 6 1 3425 3537 43051636 43051747 1.050000e-37 169.0
53 TraesCS6B01G116700 chr6D 92.982 57 4 0 6017 6073 125242285 125242229 3.900000e-12 84.2
54 TraesCS6B01G116700 chr7B 87.179 819 68 21 1740 2556 41313184 41312401 0.000000e+00 896.0
55 TraesCS6B01G116700 chr7B 95.817 526 19 2 5344 5867 327450253 327449729 0.000000e+00 846.0
56 TraesCS6B01G116700 chr7B 95.463 529 19 3 5343 5867 205379455 205379982 0.000000e+00 839.0
57 TraesCS6B01G116700 chr7B 91.107 596 49 4 1 594 579853255 579852662 0.000000e+00 804.0
58 TraesCS6B01G116700 chr7B 77.451 510 105 9 1123 1627 567635514 567636018 4.600000e-76 296.0
59 TraesCS6B01G116700 chr7B 96.078 153 6 0 3665 3817 671719087 671719239 3.630000e-62 250.0
60 TraesCS6B01G116700 chr7B 97.260 146 4 0 3669 3814 245179241 245179386 1.310000e-61 248.0
61 TraesCS6B01G116700 chr7B 85.135 74 10 1 585 658 681615979 681616051 2.350000e-09 75.0
62 TraesCS6B01G116700 chr3B 96.205 527 17 2 5343 5867 773259871 773260396 0.000000e+00 859.0
63 TraesCS6B01G116700 chr3B 90.268 596 52 5 1 594 595402388 595402979 0.000000e+00 774.0
64 TraesCS6B01G116700 chr2D 90.333 631 60 1 1000 1629 32152080 32151450 0.000000e+00 826.0
65 TraesCS6B01G116700 chr2D 91.779 596 46 3 1 594 610424355 610423761 0.000000e+00 826.0
66 TraesCS6B01G116700 chr2D 91.107 596 49 4 1 594 498511598 498512191 0.000000e+00 804.0
67 TraesCS6B01G116700 chr2D 90.268 596 53 5 1 594 159824973 159824381 0.000000e+00 774.0
68 TraesCS6B01G116700 chr2D 87.805 574 47 10 4623 5173 32151355 32150782 0.000000e+00 651.0
69 TraesCS6B01G116700 chr2D 98.347 121 2 0 3274 3394 501703979 501703859 4.770000e-51 213.0
70 TraesCS6B01G116700 chr2D 90.647 139 9 2 1740 1876 60547438 60547302 1.340000e-41 182.0
71 TraesCS6B01G116700 chr2D 80.769 156 18 6 5913 6066 130427653 130427798 1.790000e-20 111.0
72 TraesCS6B01G116700 chr2D 78.395 162 22 8 5913 6074 566301439 566301587 6.480000e-15 93.5
73 TraesCS6B01G116700 chr4B 89.731 594 59 2 1 593 105473120 105472528 0.000000e+00 758.0
74 TraesCS6B01G116700 chr4B 96.622 148 5 0 3669 3816 592733628 592733481 4.700000e-61 246.0
75 TraesCS6B01G116700 chr4B 96.667 120 4 0 3277 3396 663766095 663766214 3.710000e-47 200.0
76 TraesCS6B01G116700 chr5A 83.234 501 53 14 1720 2218 410467741 410467270 1.210000e-116 431.0
77 TraesCS6B01G116700 chr7D 78.304 507 100 9 1126 1627 529774126 529773625 9.820000e-83 318.0
78 TraesCS6B01G116700 chr7D 93.077 130 9 0 3273 3402 64732156 64732027 2.230000e-44 191.0
79 TraesCS6B01G116700 chr7D 87.629 97 12 0 5978 6074 545689503 545689407 4.980000e-21 113.0
80 TraesCS6B01G116700 chr4A 96.815 157 3 2 3667 3822 696374872 696375027 1.680000e-65 261.0
81 TraesCS6B01G116700 chr4A 80.088 226 39 5 1442 1662 537131992 537132216 4.870000e-36 163.0
82 TraesCS6B01G116700 chr1B 97.260 146 4 0 3669 3814 552101674 552101819 1.310000e-61 248.0
83 TraesCS6B01G116700 chr4D 92.537 134 10 0 3262 3395 234179127 234179260 6.210000e-45 193.0
84 TraesCS6B01G116700 chr3D 83.495 206 30 3 1461 1662 604180108 604180313 8.040000e-44 189.0
85 TraesCS6B01G116700 chr3D 85.149 101 10 4 5976 6074 577241614 577241517 1.390000e-16 99.0
86 TraesCS6B01G116700 chr5D 87.500 64 7 1 585 648 352456979 352457041 8.440000e-09 73.1
87 TraesCS6B01G116700 chr5D 90.566 53 3 2 595 646 30564521 30564572 1.090000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G116700 chr6B 103698088 103704161 6073 True 11217.0 11217 100.00000 1 6074 1 chr6B.!!$R2 6073
1 TraesCS6B01G116700 chr6B 103291978 103293329 1351 True 2447.0 2447 99.33500 1738 3090 1 chr6B.!!$R1 1352
2 TraesCS6B01G116700 chr6B 114107678 114108204 526 True 833.0 833 95.25600 5343 5867 1 chr6B.!!$R3 524
3 TraesCS6B01G116700 chr6B 17958982 17960618 1636 False 619.5 686 86.79350 1001 5075 2 chr6B.!!$F2 4074
4 TraesCS6B01G116700 chr3A 137588976 137590333 1357 False 2412.0 2412 98.74900 1735 3090 1 chr3A.!!$F1 1355
5 TraesCS6B01G116700 chr5B 111910669 111912026 1357 True 2401.0 2401 98.60200 1738 3093 1 chr5B.!!$R2 1355
6 TraesCS6B01G116700 chr5B 499079025 499079552 527 True 856.0 856 96.02300 5343 5867 1 chr5B.!!$R3 524
7 TraesCS6B01G116700 chr5B 711956049 711956576 527 True 824.0 824 94.88600 5342 5867 1 chr5B.!!$R5 525
8 TraesCS6B01G116700 chr5B 465801532 465802057 525 False 787.0 787 93.73800 5343 5867 1 chr5B.!!$F4 524
9 TraesCS6B01G116700 chr5B 684163132 684163659 527 True 761.0 761 92.81700 5343 5867 1 chr5B.!!$R4 524
10 TraesCS6B01G116700 chr5B 394211552 394212143 591 False 752.0 752 89.59700 1 594 1 chr5B.!!$F3 593
11 TraesCS6B01G116700 chr5B 83557397 83557990 593 True 743.0 743 89.28000 1 594 1 chr5B.!!$R1 593
12 TraesCS6B01G116700 chr5B 335041816 335043111 1295 False 582.5 623 93.15450 2260 3090 2 chr5B.!!$F5 830
13 TraesCS6B01G116700 chr7A 460587063 460588416 1353 False 2394.0 2394 98.59700 1739 3090 1 chr7A.!!$F1 1351
14 TraesCS6B01G116700 chr7A 609339349 609339863 514 True 294.0 294 77.45700 1126 1630 1 chr7A.!!$R1 504
15 TraesCS6B01G116700 chr6A 555813937 555815286 1349 True 2388.0 2388 98.59400 1740 3090 1 chr6A.!!$R1 1350
16 TraesCS6B01G116700 chr6A 53499999 53503239 3240 False 817.5 1628 91.33625 761 5952 4 chr6A.!!$F3 5191
17 TraesCS6B01G116700 chr2B 688476872 688478216 1344 False 2261.0 2261 96.72700 1727 3099 1 chr2B.!!$F4 1372
18 TraesCS6B01G116700 chr2B 67755 68291 536 True 841.0 841 94.98100 5333 5867 1 chr2B.!!$R1 534
19 TraesCS6B01G116700 chr2B 52689325 52690551 1226 False 745.0 887 90.03200 921 5074 2 chr2B.!!$F5 4153
20 TraesCS6B01G116700 chr2A 155830549 155831874 1325 False 1965.0 1965 93.26400 1740 3088 1 chr2A.!!$F2 1348
21 TraesCS6B01G116700 chr2A 34294110 34295258 1148 True 756.0 876 91.89700 1000 5074 2 chr2A.!!$R2 4074
22 TraesCS6B01G116700 chr1A 94506537 94507865 1328 True 1954.0 1954 93.06300 1740 3091 1 chr1A.!!$R1 1351
23 TraesCS6B01G116700 chr6D 365332435 365333032 597 False 736.0 736 89.00000 1 594 1 chr6D.!!$F1 593
24 TraesCS6B01G116700 chr6D 43050303 43053499 3196 False 680.4 1513 91.28220 667 6074 5 chr6D.!!$F2 5407
25 TraesCS6B01G116700 chr7B 41312401 41313184 783 True 896.0 896 87.17900 1740 2556 1 chr7B.!!$R1 816
26 TraesCS6B01G116700 chr7B 327449729 327450253 524 True 846.0 846 95.81700 5344 5867 1 chr7B.!!$R2 523
27 TraesCS6B01G116700 chr7B 205379455 205379982 527 False 839.0 839 95.46300 5343 5867 1 chr7B.!!$F1 524
28 TraesCS6B01G116700 chr7B 579852662 579853255 593 True 804.0 804 91.10700 1 594 1 chr7B.!!$R3 593
29 TraesCS6B01G116700 chr7B 567635514 567636018 504 False 296.0 296 77.45100 1123 1627 1 chr7B.!!$F3 504
30 TraesCS6B01G116700 chr3B 773259871 773260396 525 False 859.0 859 96.20500 5343 5867 1 chr3B.!!$F2 524
31 TraesCS6B01G116700 chr3B 595402388 595402979 591 False 774.0 774 90.26800 1 594 1 chr3B.!!$F1 593
32 TraesCS6B01G116700 chr2D 610423761 610424355 594 True 826.0 826 91.77900 1 594 1 chr2D.!!$R4 593
33 TraesCS6B01G116700 chr2D 498511598 498512191 593 False 804.0 804 91.10700 1 594 1 chr2D.!!$F2 593
34 TraesCS6B01G116700 chr2D 159824381 159824973 592 True 774.0 774 90.26800 1 594 1 chr2D.!!$R2 593
35 TraesCS6B01G116700 chr2D 32150782 32152080 1298 True 738.5 826 89.06900 1000 5173 2 chr2D.!!$R5 4173
36 TraesCS6B01G116700 chr4B 105472528 105473120 592 True 758.0 758 89.73100 1 593 1 chr4B.!!$R1 592
37 TraesCS6B01G116700 chr7D 529773625 529774126 501 True 318.0 318 78.30400 1126 1627 1 chr7D.!!$R2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 839 0.942252 GTGAAGTCCCAAACCACGAC 59.058 55.000 0.00 0.00 0.00 4.34 F
1719 1811 1.072159 CCGGATTGGAGCTCCATCC 59.928 63.158 33.18 33.18 46.97 3.51 F
3293 3923 0.032813 ACTAATCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30 F
3298 3928 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
3389 4019 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2284 0.461516 CCAGTGATCTGCTCATGCGT 60.462 55.000 0.00 0.00 43.34 5.24 R
3279 3909 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4609 5605 1.259840 GCCTGCACATGGACCCATTT 61.260 55.000 0.00 0.00 33.90 2.32 R
4619 5615 1.395635 CACCATGTATGCCTGCACAT 58.604 50.000 0.00 0.00 35.79 3.21 R
5076 6075 2.416747 TCAGGATTTCACAGCAAGTCG 58.583 47.619 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 1.762222 CGCGAATCGGCCGAAATCTT 61.762 55.000 34.66 22.34 33.78 2.40
58 60 2.159382 GGCCGAAATCTTGAGGAAACA 58.841 47.619 0.00 0.00 0.00 2.83
152 156 1.542492 CTTCAATCTGTTGCTGCCCT 58.458 50.000 0.00 0.00 35.26 5.19
193 197 3.785122 GAACCCCACCAACGGCTGT 62.785 63.158 0.00 0.00 0.00 4.40
313 319 1.203505 TGGGAGGGGAGTAATGAACCA 60.204 52.381 0.00 0.00 0.00 3.67
524 532 4.145876 TCATGTCAAGATTCGTGCAAAC 57.854 40.909 0.00 0.00 0.00 2.93
541 549 3.554524 CAAACAGCAATGAACGACGATT 58.445 40.909 0.00 0.00 0.00 3.34
594 602 3.065510 CACGTGTGGGTGTTATTGTTTCA 59.934 43.478 7.58 0.00 33.24 2.69
595 603 3.695060 ACGTGTGGGTGTTATTGTTTCAA 59.305 39.130 0.00 0.00 0.00 2.69
596 604 4.158025 ACGTGTGGGTGTTATTGTTTCAAA 59.842 37.500 0.00 0.00 0.00 2.69
597 605 5.163499 ACGTGTGGGTGTTATTGTTTCAAAT 60.163 36.000 0.00 0.00 0.00 2.32
598 606 5.751028 CGTGTGGGTGTTATTGTTTCAAATT 59.249 36.000 0.00 0.00 0.00 1.82
599 607 6.292061 CGTGTGGGTGTTATTGTTTCAAATTG 60.292 38.462 0.00 0.00 0.00 2.32
600 608 6.758886 GTGTGGGTGTTATTGTTTCAAATTGA 59.241 34.615 0.00 0.00 0.00 2.57
601 609 7.278868 GTGTGGGTGTTATTGTTTCAAATTGAA 59.721 33.333 4.03 4.03 34.03 2.69
602 610 7.493971 TGTGGGTGTTATTGTTTCAAATTGAAG 59.506 33.333 8.51 0.00 37.70 3.02
603 611 6.481644 TGGGTGTTATTGTTTCAAATTGAAGC 59.518 34.615 14.35 14.35 37.70 3.86
604 612 6.481644 GGGTGTTATTGTTTCAAATTGAAGCA 59.518 34.615 18.87 18.87 44.01 3.91
605 613 7.344441 GGTGTTATTGTTTCAAATTGAAGCAC 58.656 34.615 21.72 12.85 45.05 4.40
606 614 7.056800 GTGTTATTGTTTCAAATTGAAGCACG 58.943 34.615 21.72 0.00 45.05 5.34
607 615 6.754209 TGTTATTGTTTCAAATTGAAGCACGT 59.246 30.769 21.72 16.21 45.05 4.49
608 616 5.640218 ATTGTTTCAAATTGAAGCACGTG 57.360 34.783 21.72 12.28 45.05 4.49
609 617 4.362932 TGTTTCAAATTGAAGCACGTGA 57.637 36.364 22.23 0.00 41.53 4.35
610 618 4.738124 TGTTTCAAATTGAAGCACGTGAA 58.262 34.783 22.23 4.56 41.53 3.18
611 619 5.347342 TGTTTCAAATTGAAGCACGTGAAT 58.653 33.333 22.23 7.09 41.53 2.57
612 620 6.499172 TGTTTCAAATTGAAGCACGTGAATA 58.501 32.000 22.23 0.00 41.53 1.75
613 621 6.636447 TGTTTCAAATTGAAGCACGTGAATAG 59.364 34.615 22.23 6.72 41.53 1.73
614 622 6.552859 TTCAAATTGAAGCACGTGAATAGA 57.447 33.333 22.23 8.85 31.83 1.98
615 623 6.169419 TCAAATTGAAGCACGTGAATAGAG 57.831 37.500 22.23 4.05 0.00 2.43
616 624 5.122239 TCAAATTGAAGCACGTGAATAGAGG 59.878 40.000 22.23 0.12 0.00 3.69
617 625 3.953712 TTGAAGCACGTGAATAGAGGA 57.046 42.857 22.23 0.00 0.00 3.71
618 626 3.953712 TGAAGCACGTGAATAGAGGAA 57.046 42.857 22.23 0.00 0.00 3.36
619 627 3.849911 TGAAGCACGTGAATAGAGGAAG 58.150 45.455 22.23 0.00 0.00 3.46
620 628 2.301577 AGCACGTGAATAGAGGAAGC 57.698 50.000 22.23 0.00 0.00 3.86
621 629 1.550524 AGCACGTGAATAGAGGAAGCA 59.449 47.619 22.23 0.00 0.00 3.91
622 630 2.169352 AGCACGTGAATAGAGGAAGCAT 59.831 45.455 22.23 0.00 0.00 3.79
623 631 2.939103 GCACGTGAATAGAGGAAGCATT 59.061 45.455 22.23 0.00 0.00 3.56
624 632 4.119862 GCACGTGAATAGAGGAAGCATTA 58.880 43.478 22.23 0.00 0.00 1.90
625 633 4.752101 GCACGTGAATAGAGGAAGCATTAT 59.248 41.667 22.23 0.00 0.00 1.28
626 634 5.926542 GCACGTGAATAGAGGAAGCATTATA 59.073 40.000 22.23 0.00 0.00 0.98
627 635 6.591834 GCACGTGAATAGAGGAAGCATTATAT 59.408 38.462 22.23 0.00 0.00 0.86
628 636 7.118390 GCACGTGAATAGAGGAAGCATTATATT 59.882 37.037 22.23 0.00 0.00 1.28
629 637 8.993121 CACGTGAATAGAGGAAGCATTATATTT 58.007 33.333 10.90 0.00 0.00 1.40
630 638 9.561069 ACGTGAATAGAGGAAGCATTATATTTT 57.439 29.630 0.00 0.00 0.00 1.82
697 705 2.435059 GGCTTGAGGTGGCGACTC 60.435 66.667 0.00 1.72 35.55 3.36
698 706 2.811317 GCTTGAGGTGGCGACTCG 60.811 66.667 0.00 0.00 37.79 4.18
747 755 1.819632 CCGGTAGGCATTGTCCAGC 60.820 63.158 0.00 0.00 0.00 4.85
789 802 4.701651 ATCCCGGTATACTTTTCTTCCC 57.298 45.455 0.00 0.00 0.00 3.97
796 809 5.114780 GGTATACTTTTCTTCCCGTCCTTC 58.885 45.833 2.25 0.00 0.00 3.46
797 810 2.563261 ACTTTTCTTCCCGTCCTTCC 57.437 50.000 0.00 0.00 0.00 3.46
798 811 1.772453 ACTTTTCTTCCCGTCCTTCCA 59.228 47.619 0.00 0.00 0.00 3.53
799 812 2.375509 ACTTTTCTTCCCGTCCTTCCAT 59.624 45.455 0.00 0.00 0.00 3.41
800 813 2.781681 TTTCTTCCCGTCCTTCCATC 57.218 50.000 0.00 0.00 0.00 3.51
801 814 1.651737 TTCTTCCCGTCCTTCCATCA 58.348 50.000 0.00 0.00 0.00 3.07
802 815 1.651737 TCTTCCCGTCCTTCCATCAA 58.348 50.000 0.00 0.00 0.00 2.57
826 839 0.942252 GTGAAGTCCCAAACCACGAC 59.058 55.000 0.00 0.00 0.00 4.34
1453 1514 4.680237 CGTCGCCAAGCACTCCCA 62.680 66.667 0.00 0.00 0.00 4.37
1633 1716 2.736144 CAGGACGTGCAGGTACTAAA 57.264 50.000 23.29 0.00 36.02 1.85
1666 1749 4.377762 TCCATCCATGAATCCATCCTTC 57.622 45.455 0.00 0.00 0.00 3.46
1687 1775 6.348295 CCTTCAATCCATGATTCATTAGCTCG 60.348 42.308 0.00 0.00 38.03 5.03
1711 1803 2.278857 CTCGTCGCCGGATTGGAG 60.279 66.667 5.05 1.58 42.00 3.86
1712 1804 4.508128 TCGTCGCCGGATTGGAGC 62.508 66.667 5.05 0.00 42.00 4.70
1713 1805 4.514577 CGTCGCCGGATTGGAGCT 62.515 66.667 5.05 0.00 42.00 4.09
1714 1806 2.586357 GTCGCCGGATTGGAGCTC 60.586 66.667 5.05 4.71 42.00 4.09
1715 1807 3.849951 TCGCCGGATTGGAGCTCC 61.850 66.667 26.78 26.78 42.00 4.70
1716 1808 4.161295 CGCCGGATTGGAGCTCCA 62.161 66.667 32.00 32.00 45.94 3.86
1717 1809 2.512896 GCCGGATTGGAGCTCCAT 59.487 61.111 35.42 24.16 46.97 3.41
1718 1810 1.599240 GCCGGATTGGAGCTCCATC 60.599 63.158 35.42 29.25 46.97 3.51
1719 1811 1.072159 CCGGATTGGAGCTCCATCC 59.928 63.158 33.18 33.18 46.97 3.51
1799 1893 1.571955 GCCCAGGATTTTGACCCAAT 58.428 50.000 0.00 0.00 0.00 3.16
2175 2280 2.342279 CCGAACCACTTCTGGCGA 59.658 61.111 0.00 0.00 42.08 5.54
2179 2284 0.033504 GAACCACTTCTGGCGACTGA 59.966 55.000 0.00 0.00 42.08 3.41
2290 2396 9.898152 GGTAATTCCCCATTTTATCATTTTTGA 57.102 29.630 0.00 0.00 0.00 2.69
3094 3690 3.602513 AAGCTCCGCCACTGCTCAG 62.603 63.158 0.00 0.00 35.85 3.35
3095 3691 4.385405 GCTCCGCCACTGCTCAGT 62.385 66.667 0.00 0.00 43.61 3.41
3096 3692 3.006756 GCTCCGCCACTGCTCAGTA 62.007 63.158 1.79 0.00 40.20 2.74
3098 3694 2.185350 CCGCCACTGCTCAGTAGG 59.815 66.667 1.79 7.89 40.20 3.18
3164 3760 2.187946 GGTCTCCCCATGCGACAG 59.812 66.667 0.00 0.00 0.00 3.51
3191 3810 4.156190 CCAGTGTCGACATTCAGTAGTAGT 59.844 45.833 23.12 0.00 0.00 2.73
3192 3811 5.353400 CCAGTGTCGACATTCAGTAGTAGTA 59.647 44.000 23.12 0.00 0.00 1.82
3193 3812 6.457122 CCAGTGTCGACATTCAGTAGTAGTAG 60.457 46.154 23.12 0.67 0.00 2.57
3194 3813 6.092396 CAGTGTCGACATTCAGTAGTAGTAGT 59.908 42.308 23.12 0.00 0.00 2.73
3195 3814 7.277319 CAGTGTCGACATTCAGTAGTAGTAGTA 59.723 40.741 23.12 0.00 0.00 1.82
3196 3815 7.277539 AGTGTCGACATTCAGTAGTAGTAGTAC 59.722 40.741 23.12 7.01 0.00 2.73
3197 3816 6.254373 TGTCGACATTCAGTAGTAGTAGTACG 59.746 42.308 15.76 5.43 33.97 3.67
3202 3821 9.861138 GACATTCAGTAGTAGTAGTACGTTATG 57.139 37.037 9.09 13.62 33.97 1.90
3237 3860 0.451783 CGGCCAGGCTTGTTGATTAC 59.548 55.000 12.43 0.00 0.00 1.89
3238 3861 0.451783 GGCCAGGCTTGTTGATTACG 59.548 55.000 12.43 0.00 0.00 3.18
3278 3908 7.107542 GTGTTTGGTGGATTGATACCTACTAA 58.892 38.462 0.00 0.00 37.84 2.24
3279 3909 7.773690 GTGTTTGGTGGATTGATACCTACTAAT 59.226 37.037 0.00 0.00 37.84 1.73
3280 3910 7.990886 TGTTTGGTGGATTGATACCTACTAATC 59.009 37.037 0.00 0.00 37.84 1.75
3281 3911 6.681729 TGGTGGATTGATACCTACTAATCC 57.318 41.667 0.00 0.00 45.54 3.01
3282 3912 5.546499 TGGTGGATTGATACCTACTAATCCC 59.454 44.000 11.16 4.40 45.01 3.85
3283 3913 5.785940 GGTGGATTGATACCTACTAATCCCT 59.214 44.000 11.16 0.00 45.01 4.20
3284 3914 6.070710 GGTGGATTGATACCTACTAATCCCTC 60.071 46.154 11.16 5.81 45.01 4.30
3285 3915 6.023603 TGGATTGATACCTACTAATCCCTCC 58.976 44.000 11.16 0.00 45.01 4.30
3286 3916 5.127356 GGATTGATACCTACTAATCCCTCCG 59.873 48.000 0.00 0.00 41.61 4.63
3287 3917 4.736611 TGATACCTACTAATCCCTCCGT 57.263 45.455 0.00 0.00 0.00 4.69
3288 3918 4.660168 TGATACCTACTAATCCCTCCGTC 58.340 47.826 0.00 0.00 0.00 4.79
3289 3919 2.378378 ACCTACTAATCCCTCCGTCC 57.622 55.000 0.00 0.00 0.00 4.79
3290 3920 1.245732 CCTACTAATCCCTCCGTCCG 58.754 60.000 0.00 0.00 0.00 4.79
3291 3921 1.245732 CTACTAATCCCTCCGTCCGG 58.754 60.000 0.00 0.00 0.00 5.14
3292 3922 0.846015 TACTAATCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
3293 3923 0.032813 ACTAATCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
3294 3924 1.117150 CTAATCCCTCCGTCCGGAAA 58.883 55.000 5.23 0.00 44.66 3.13
3295 3925 1.692519 CTAATCCCTCCGTCCGGAAAT 59.307 52.381 5.23 1.49 44.66 2.17
3296 3926 1.797320 AATCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
3297 3927 1.046204 ATCCCTCCGTCCGGAAATAC 58.954 55.000 5.23 0.00 44.66 1.89
3298 3928 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3299 3929 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3300 3930 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3301 3931 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3302 3932 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3303 3933 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3304 3934 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3305 3935 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3306 3936 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3307 3937 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
3308 3938 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
3309 3939 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
3310 3940 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
3311 3941 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
3312 3942 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
3313 3943 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
3314 3944 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
3315 3945 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
3316 3946 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
3317 3947 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
3318 3948 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
3319 3949 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
3320 3950 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
3321 3951 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
3322 3952 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
3323 3953 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
3324 3954 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
3325 3955 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
3326 3956 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
3327 3957 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
3328 3958 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
3329 3959 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
3348 3978 9.347934 GATGTATTTCAGTTCTAGATACATCCG 57.652 37.037 20.24 4.52 45.75 4.18
3349 3979 8.234136 TGTATTTCAGTTCTAGATACATCCGT 57.766 34.615 0.00 0.00 30.60 4.69
3350 3980 8.692710 TGTATTTCAGTTCTAGATACATCCGTT 58.307 33.333 0.00 0.00 30.60 4.44
3351 3981 9.530633 GTATTTCAGTTCTAGATACATCCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3353 3983 8.842358 TTTCAGTTCTAGATACATCCGTTTTT 57.158 30.769 0.00 0.00 0.00 1.94
3354 3984 9.932207 TTTCAGTTCTAGATACATCCGTTTTTA 57.068 29.630 0.00 0.00 0.00 1.52
3356 3986 9.529325 TCAGTTCTAGATACATCCGTTTTTATG 57.471 33.333 0.00 0.00 0.00 1.90
3357 3987 8.276325 CAGTTCTAGATACATCCGTTTTTATGC 58.724 37.037 0.00 0.00 0.00 3.14
3358 3988 7.985184 AGTTCTAGATACATCCGTTTTTATGCA 59.015 33.333 0.00 0.00 0.00 3.96
3359 3989 8.774586 GTTCTAGATACATCCGTTTTTATGCAT 58.225 33.333 3.79 3.79 0.00 3.96
3360 3990 8.902540 TCTAGATACATCCGTTTTTATGCATT 57.097 30.769 3.54 0.00 0.00 3.56
3361 3991 9.337396 TCTAGATACATCCGTTTTTATGCATTT 57.663 29.630 3.54 0.00 0.00 2.32
3362 3992 9.599322 CTAGATACATCCGTTTTTATGCATTTC 57.401 33.333 3.54 0.00 0.00 2.17
3363 3993 8.225603 AGATACATCCGTTTTTATGCATTTCT 57.774 30.769 3.54 0.00 0.00 2.52
3364 3994 8.131100 AGATACATCCGTTTTTATGCATTTCTG 58.869 33.333 3.54 0.00 0.00 3.02
3378 4008 4.098416 GCATTTCTGCGACAAGTATTTCC 58.902 43.478 0.00 0.00 38.92 3.13
3379 4009 4.334443 CATTTCTGCGACAAGTATTTCCG 58.666 43.478 0.00 0.00 0.00 4.30
3380 4010 2.004583 TCTGCGACAAGTATTTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
3381 4011 1.546923 TCTGCGACAAGTATTTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
3382 4012 1.659098 CTGCGACAAGTATTTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
3383 4013 0.643820 GCGACAAGTATTTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
3384 4014 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3385 4015 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3386 4016 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3387 4017 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3388 4018 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3389 4019 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3390 4020 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3396 4026 0.107017 CCGGACGGAGGGAGTACTAA 60.107 60.000 4.40 0.00 37.50 2.24
3411 4041 9.614792 AGGGAGTACTAATTTGTTCATATGTTC 57.385 33.333 1.90 0.00 0.00 3.18
3435 4065 0.552848 AACTATGGGATGGCTGGGTG 59.447 55.000 0.00 0.00 0.00 4.61
3463 4093 5.123344 GCGGTAGTTGGAAATTATTGTGACT 59.877 40.000 0.00 0.00 0.00 3.41
3472 4102 9.883142 TTGGAAATTATTGTGACTTTTGAAACT 57.117 25.926 0.00 0.00 0.00 2.66
3513 4143 5.568620 AACTTGGGTTCTGTTCAGTATCT 57.431 39.130 0.00 0.00 0.00 1.98
3537 4167 9.681692 TCTGTTGATGTTTGATTTACAGAATTG 57.318 29.630 0.00 0.00 37.99 2.32
3539 4169 8.143193 TGTTGATGTTTGATTTACAGAATTGCT 58.857 29.630 0.00 0.00 0.00 3.91
3540 4170 8.642020 GTTGATGTTTGATTTACAGAATTGCTC 58.358 33.333 0.00 0.00 0.00 4.26
3541 4171 7.315142 TGATGTTTGATTTACAGAATTGCTCC 58.685 34.615 0.00 0.00 0.00 4.70
3542 4172 6.024552 TGTTTGATTTACAGAATTGCTCCC 57.975 37.500 0.00 0.00 0.00 4.30
3543 4173 5.774690 TGTTTGATTTACAGAATTGCTCCCT 59.225 36.000 0.00 0.00 0.00 4.20
3544 4174 6.267471 TGTTTGATTTACAGAATTGCTCCCTT 59.733 34.615 0.00 0.00 0.00 3.95
3545 4175 6.515272 TTGATTTACAGAATTGCTCCCTTC 57.485 37.500 0.00 0.00 0.00 3.46
3546 4176 5.569355 TGATTTACAGAATTGCTCCCTTCA 58.431 37.500 0.00 0.00 0.00 3.02
3547 4177 6.189859 TGATTTACAGAATTGCTCCCTTCAT 58.810 36.000 0.00 0.00 0.00 2.57
3548 4178 7.345691 TGATTTACAGAATTGCTCCCTTCATA 58.654 34.615 0.00 0.00 0.00 2.15
3549 4179 7.283127 TGATTTACAGAATTGCTCCCTTCATAC 59.717 37.037 0.00 0.00 0.00 2.39
3550 4180 4.574674 ACAGAATTGCTCCCTTCATACA 57.425 40.909 0.00 0.00 0.00 2.29
3551 4181 4.521146 ACAGAATTGCTCCCTTCATACAG 58.479 43.478 0.00 0.00 0.00 2.74
3552 4182 4.225942 ACAGAATTGCTCCCTTCATACAGA 59.774 41.667 0.00 0.00 0.00 3.41
3553 4183 5.188434 CAGAATTGCTCCCTTCATACAGAA 58.812 41.667 0.00 0.00 34.41 3.02
3554 4184 5.649395 CAGAATTGCTCCCTTCATACAGAAA 59.351 40.000 0.00 0.00 35.40 2.52
3555 4185 6.320672 CAGAATTGCTCCCTTCATACAGAAAT 59.679 38.462 0.00 0.00 35.40 2.17
3556 4186 7.500227 CAGAATTGCTCCCTTCATACAGAAATA 59.500 37.037 0.00 0.00 35.40 1.40
3557 4187 8.223330 AGAATTGCTCCCTTCATACAGAAATAT 58.777 33.333 0.00 0.00 35.40 1.28
3558 4188 9.507329 GAATTGCTCCCTTCATACAGAAATATA 57.493 33.333 0.00 0.00 35.40 0.86
3559 4189 9.866655 AATTGCTCCCTTCATACAGAAATATAA 57.133 29.630 0.00 0.00 35.40 0.98
3560 4190 8.908786 TTGCTCCCTTCATACAGAAATATAAG 57.091 34.615 0.00 0.00 35.40 1.73
3561 4191 8.262601 TGCTCCCTTCATACAGAAATATAAGA 57.737 34.615 0.00 0.00 35.40 2.10
3562 4192 8.713971 TGCTCCCTTCATACAGAAATATAAGAA 58.286 33.333 0.00 0.00 35.40 2.52
3563 4193 8.994170 GCTCCCTTCATACAGAAATATAAGAAC 58.006 37.037 0.00 0.00 35.40 3.01
3612 4242 9.645059 TGATCTAAACACTCTTCATACAGAAAG 57.355 33.333 0.00 0.00 35.40 2.62
3613 4243 9.646427 GATCTAAACACTCTTCATACAGAAAGT 57.354 33.333 0.00 0.00 35.40 2.66
3650 4280 4.141688 GGGAGTACTAACCATGAAAGAGGG 60.142 50.000 10.44 0.00 0.00 4.30
3674 4304 5.400066 TTTTTACCTGCAATCTTTAGGCC 57.600 39.130 0.00 0.00 34.93 5.19
3676 4306 2.907458 ACCTGCAATCTTTAGGCCTT 57.093 45.000 12.58 0.00 34.93 4.35
3677 4307 2.450476 ACCTGCAATCTTTAGGCCTTG 58.550 47.619 12.58 2.16 34.93 3.61
3678 4308 2.225117 ACCTGCAATCTTTAGGCCTTGT 60.225 45.455 12.58 0.00 34.93 3.16
3679 4309 2.827921 CCTGCAATCTTTAGGCCTTGTT 59.172 45.455 12.58 0.00 0.00 2.83
3680 4310 3.119352 CCTGCAATCTTTAGGCCTTGTTC 60.119 47.826 12.58 0.00 0.00 3.18
3681 4311 2.487762 TGCAATCTTTAGGCCTTGTTCG 59.512 45.455 12.58 0.00 0.00 3.95
3682 4312 2.159379 GCAATCTTTAGGCCTTGTTCGG 60.159 50.000 12.58 0.00 0.00 4.30
3683 4313 3.081804 CAATCTTTAGGCCTTGTTCGGT 58.918 45.455 12.58 0.00 0.00 4.69
3684 4314 2.943036 TCTTTAGGCCTTGTTCGGTT 57.057 45.000 12.58 0.00 0.00 4.44
3685 4315 2.500229 TCTTTAGGCCTTGTTCGGTTG 58.500 47.619 12.58 0.00 0.00 3.77
3686 4316 0.955905 TTTAGGCCTTGTTCGGTTGC 59.044 50.000 12.58 0.00 0.00 4.17
3687 4317 1.231958 TTAGGCCTTGTTCGGTTGCG 61.232 55.000 12.58 0.00 0.00 4.85
3688 4318 2.386064 TAGGCCTTGTTCGGTTGCGT 62.386 55.000 12.58 0.00 0.00 5.24
3689 4319 2.051345 GCCTTGTTCGGTTGCGTG 60.051 61.111 0.00 0.00 0.00 5.34
3690 4320 2.830285 GCCTTGTTCGGTTGCGTGT 61.830 57.895 0.00 0.00 0.00 4.49
3691 4321 1.010125 CCTTGTTCGGTTGCGTGTG 60.010 57.895 0.00 0.00 0.00 3.82
3692 4322 1.433053 CCTTGTTCGGTTGCGTGTGA 61.433 55.000 0.00 0.00 0.00 3.58
3693 4323 0.375454 CTTGTTCGGTTGCGTGTGAA 59.625 50.000 0.00 0.00 0.00 3.18
3694 4324 1.002900 CTTGTTCGGTTGCGTGTGAAT 60.003 47.619 0.00 0.00 0.00 2.57
3695 4325 0.584396 TGTTCGGTTGCGTGTGAATC 59.416 50.000 0.00 0.00 0.00 2.52
3696 4326 0.110373 GTTCGGTTGCGTGTGAATCC 60.110 55.000 0.00 0.00 0.00 3.01
3697 4327 1.561717 TTCGGTTGCGTGTGAATCCG 61.562 55.000 0.00 0.00 39.40 4.18
3698 4328 2.024868 CGGTTGCGTGTGAATCCGA 61.025 57.895 0.00 0.00 40.29 4.55
3699 4329 1.787847 GGTTGCGTGTGAATCCGAG 59.212 57.895 0.00 0.00 0.00 4.63
3700 4330 0.949105 GGTTGCGTGTGAATCCGAGT 60.949 55.000 0.00 0.00 0.00 4.18
3701 4331 0.163788 GTTGCGTGTGAATCCGAGTG 59.836 55.000 0.00 0.00 0.00 3.51
3702 4332 0.948623 TTGCGTGTGAATCCGAGTGG 60.949 55.000 0.00 0.00 0.00 4.00
3712 4342 2.296920 TCCGAGTGGATTGAAGGGG 58.703 57.895 0.00 0.00 40.17 4.79
3713 4343 0.546747 TCCGAGTGGATTGAAGGGGT 60.547 55.000 0.00 0.00 40.17 4.95
3714 4344 0.328258 CCGAGTGGATTGAAGGGGTT 59.672 55.000 0.00 0.00 37.49 4.11
3715 4345 1.271926 CCGAGTGGATTGAAGGGGTTT 60.272 52.381 0.00 0.00 37.49 3.27
3716 4346 1.812571 CGAGTGGATTGAAGGGGTTTG 59.187 52.381 0.00 0.00 0.00 2.93
3717 4347 2.552155 CGAGTGGATTGAAGGGGTTTGA 60.552 50.000 0.00 0.00 0.00 2.69
3718 4348 3.084786 GAGTGGATTGAAGGGGTTTGAG 58.915 50.000 0.00 0.00 0.00 3.02
3719 4349 2.171003 GTGGATTGAAGGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
3720 4350 1.077005 TGGATTGAAGGGGTTTGAGGG 59.923 52.381 0.00 0.00 0.00 4.30
3721 4351 1.619704 GGATTGAAGGGGTTTGAGGGG 60.620 57.143 0.00 0.00 0.00 4.79
3722 4352 0.413434 ATTGAAGGGGTTTGAGGGGG 59.587 55.000 0.00 0.00 0.00 5.40
3723 4353 0.703056 TTGAAGGGGTTTGAGGGGGA 60.703 55.000 0.00 0.00 0.00 4.81
3724 4354 0.479589 TGAAGGGGTTTGAGGGGGAT 60.480 55.000 0.00 0.00 0.00 3.85
3725 4355 0.710588 GAAGGGGTTTGAGGGGGATT 59.289 55.000 0.00 0.00 0.00 3.01
3726 4356 1.078823 GAAGGGGTTTGAGGGGGATTT 59.921 52.381 0.00 0.00 0.00 2.17
3727 4357 2.084121 AGGGGTTTGAGGGGGATTTA 57.916 50.000 0.00 0.00 0.00 1.40
3728 4358 2.374179 AGGGGTTTGAGGGGGATTTAA 58.626 47.619 0.00 0.00 0.00 1.52
3729 4359 2.730816 AGGGGTTTGAGGGGGATTTAAA 59.269 45.455 0.00 0.00 0.00 1.52
3730 4360 2.835764 GGGGTTTGAGGGGGATTTAAAC 59.164 50.000 0.00 0.00 0.00 2.01
3731 4361 2.835764 GGGTTTGAGGGGGATTTAAACC 59.164 50.000 0.00 0.00 45.86 3.27
3732 4362 3.503412 GGGTTTGAGGGGGATTTAAACCT 60.503 47.826 14.54 0.00 45.86 3.50
3733 4363 5.359484 GGGTTTGAGGGGGATTTAAACCTC 61.359 50.000 13.24 13.24 45.86 3.85
3737 4367 4.864483 GAGGGGGATTTAAACCTCTTCT 57.136 45.455 12.97 0.00 44.74 2.85
3738 4368 5.970501 GAGGGGGATTTAAACCTCTTCTA 57.029 43.478 12.97 0.00 44.74 2.10
3739 4369 6.323210 GAGGGGGATTTAAACCTCTTCTAA 57.677 41.667 12.97 0.00 44.74 2.10
3740 4370 6.328782 AGGGGGATTTAAACCTCTTCTAAG 57.671 41.667 6.64 0.00 32.28 2.18
3741 4371 5.796399 AGGGGGATTTAAACCTCTTCTAAGT 59.204 40.000 6.64 0.00 32.28 2.24
3742 4372 6.069556 AGGGGGATTTAAACCTCTTCTAAGTC 60.070 42.308 6.64 0.00 32.28 3.01
3743 4373 6.296836 GGGGGATTTAAACCTCTTCTAAGTCA 60.297 42.308 6.64 0.00 0.00 3.41
3744 4374 7.173032 GGGGATTTAAACCTCTTCTAAGTCAA 58.827 38.462 0.00 0.00 0.00 3.18
3745 4375 7.668469 GGGGATTTAAACCTCTTCTAAGTCAAA 59.332 37.037 0.00 0.00 0.00 2.69
3746 4376 9.074576 GGGATTTAAACCTCTTCTAAGTCAAAA 57.925 33.333 0.00 0.00 0.00 2.44
3747 4377 9.894783 GGATTTAAACCTCTTCTAAGTCAAAAC 57.105 33.333 0.00 0.00 0.00 2.43
3751 4381 9.621629 TTAAACCTCTTCTAAGTCAAAACATGA 57.378 29.630 0.00 0.00 35.05 3.07
3752 4382 8.519799 AAACCTCTTCTAAGTCAAAACATGAA 57.480 30.769 0.00 0.00 40.50 2.57
3753 4383 7.497925 ACCTCTTCTAAGTCAAAACATGAAC 57.502 36.000 0.00 0.00 40.50 3.18
3754 4384 6.486993 ACCTCTTCTAAGTCAAAACATGAACC 59.513 38.462 0.00 0.00 40.50 3.62
3755 4385 6.486657 CCTCTTCTAAGTCAAAACATGAACCA 59.513 38.462 0.00 0.00 40.50 3.67
3756 4386 7.013274 CCTCTTCTAAGTCAAAACATGAACCAA 59.987 37.037 0.00 0.00 40.50 3.67
3757 4387 8.463930 TCTTCTAAGTCAAAACATGAACCAAT 57.536 30.769 0.00 0.00 40.50 3.16
3758 4388 8.567948 TCTTCTAAGTCAAAACATGAACCAATC 58.432 33.333 0.00 0.00 40.50 2.67
3759 4389 7.214467 TCTAAGTCAAAACATGAACCAATCC 57.786 36.000 0.00 0.00 40.50 3.01
3760 4390 7.004086 TCTAAGTCAAAACATGAACCAATCCT 58.996 34.615 0.00 0.00 40.50 3.24
3761 4391 6.484364 AAGTCAAAACATGAACCAATCCTT 57.516 33.333 0.00 0.00 40.50 3.36
3762 4392 5.846203 AGTCAAAACATGAACCAATCCTTG 58.154 37.500 0.00 0.00 40.50 3.61
3763 4393 4.448732 GTCAAAACATGAACCAATCCTTGC 59.551 41.667 0.00 0.00 40.50 4.01
3764 4394 4.100653 TCAAAACATGAACCAATCCTTGCA 59.899 37.500 0.00 0.00 34.30 4.08
3765 4395 4.686191 AAACATGAACCAATCCTTGCAA 57.314 36.364 0.00 0.00 0.00 4.08
3766 4396 4.686191 AACATGAACCAATCCTTGCAAA 57.314 36.364 0.00 0.00 0.00 3.68
3767 4397 4.895668 ACATGAACCAATCCTTGCAAAT 57.104 36.364 0.00 0.00 0.00 2.32
3768 4398 4.824289 ACATGAACCAATCCTTGCAAATC 58.176 39.130 0.00 0.00 0.00 2.17
3769 4399 3.959535 TGAACCAATCCTTGCAAATCC 57.040 42.857 0.00 0.00 0.00 3.01
3770 4400 2.566724 TGAACCAATCCTTGCAAATCCC 59.433 45.455 0.00 0.00 0.00 3.85
3771 4401 1.571955 ACCAATCCTTGCAAATCCCC 58.428 50.000 0.00 0.00 0.00 4.81
3772 4402 1.079323 ACCAATCCTTGCAAATCCCCT 59.921 47.619 0.00 0.00 0.00 4.79
3773 4403 1.758862 CCAATCCTTGCAAATCCCCTC 59.241 52.381 0.00 0.00 0.00 4.30
3774 4404 1.758862 CAATCCTTGCAAATCCCCTCC 59.241 52.381 0.00 0.00 0.00 4.30
3775 4405 1.009997 ATCCTTGCAAATCCCCTCCA 58.990 50.000 0.00 0.00 0.00 3.86
3776 4406 0.783206 TCCTTGCAAATCCCCTCCAA 59.217 50.000 0.00 0.00 0.00 3.53
3777 4407 1.362237 TCCTTGCAAATCCCCTCCAAT 59.638 47.619 0.00 0.00 0.00 3.16
3778 4408 1.758862 CCTTGCAAATCCCCTCCAATC 59.241 52.381 0.00 0.00 0.00 2.67
3779 4409 1.758862 CTTGCAAATCCCCTCCAATCC 59.241 52.381 0.00 0.00 0.00 3.01
3780 4410 1.009997 TGCAAATCCCCTCCAATCCT 58.990 50.000 0.00 0.00 0.00 3.24
3781 4411 1.063717 TGCAAATCCCCTCCAATCCTC 60.064 52.381 0.00 0.00 0.00 3.71
3782 4412 1.216427 GCAAATCCCCTCCAATCCTCT 59.784 52.381 0.00 0.00 0.00 3.69
3783 4413 2.358615 GCAAATCCCCTCCAATCCTCTT 60.359 50.000 0.00 0.00 0.00 2.85
3784 4414 3.294214 CAAATCCCCTCCAATCCTCTTG 58.706 50.000 0.00 0.00 0.00 3.02
3785 4415 1.527457 ATCCCCTCCAATCCTCTTGG 58.473 55.000 0.00 0.00 40.87 3.61
3786 4416 0.624500 TCCCCTCCAATCCTCTTGGG 60.625 60.000 4.28 0.00 39.96 4.12
3787 4417 1.649271 CCCCTCCAATCCTCTTGGGG 61.649 65.000 0.00 0.00 46.89 4.96
3788 4418 0.624500 CCCTCCAATCCTCTTGGGGA 60.625 60.000 5.43 0.00 42.70 4.81
3789 4419 0.842635 CCTCCAATCCTCTTGGGGAG 59.157 60.000 5.43 0.00 42.70 4.30
3790 4420 1.626350 CCTCCAATCCTCTTGGGGAGA 60.626 57.143 5.43 0.00 46.38 3.71
3799 4429 3.847671 CTCTTGGGGAGAGGATTAACC 57.152 52.381 0.00 0.00 46.77 2.85
3800 4430 2.103263 CTCTTGGGGAGAGGATTAACCG 59.897 54.545 0.00 0.00 46.77 4.44
3801 4431 2.116238 CTTGGGGAGAGGATTAACCGA 58.884 52.381 0.00 0.00 44.74 4.69
3802 4432 2.257391 TGGGGAGAGGATTAACCGAA 57.743 50.000 0.00 0.00 44.74 4.30
3803 4433 1.835531 TGGGGAGAGGATTAACCGAAC 59.164 52.381 0.00 0.00 44.74 3.95
3804 4434 1.835531 GGGGAGAGGATTAACCGAACA 59.164 52.381 0.00 0.00 44.74 3.18
3805 4435 2.237893 GGGGAGAGGATTAACCGAACAA 59.762 50.000 0.00 0.00 44.74 2.83
3806 4436 3.307904 GGGGAGAGGATTAACCGAACAAA 60.308 47.826 0.00 0.00 44.74 2.83
3807 4437 3.939592 GGGAGAGGATTAACCGAACAAAG 59.060 47.826 0.00 0.00 44.74 2.77
3808 4438 3.374367 GGAGAGGATTAACCGAACAAAGC 59.626 47.826 0.00 0.00 44.74 3.51
3809 4439 3.344515 AGAGGATTAACCGAACAAAGCC 58.655 45.455 0.00 0.00 44.74 4.35
3810 4440 3.009143 AGAGGATTAACCGAACAAAGCCT 59.991 43.478 0.00 0.00 41.52 4.58
3811 4441 3.756963 GAGGATTAACCGAACAAAGCCTT 59.243 43.478 0.00 0.00 39.04 4.35
3812 4442 4.913784 AGGATTAACCGAACAAAGCCTTA 58.086 39.130 0.00 0.00 44.74 2.69
3813 4443 4.941873 AGGATTAACCGAACAAAGCCTTAG 59.058 41.667 0.00 0.00 44.74 2.18
3814 4444 4.698780 GGATTAACCGAACAAAGCCTTAGT 59.301 41.667 0.00 0.00 0.00 2.24
3815 4445 5.391629 GGATTAACCGAACAAAGCCTTAGTG 60.392 44.000 0.00 0.00 0.00 2.74
3816 4446 2.632987 ACCGAACAAAGCCTTAGTGT 57.367 45.000 0.00 0.00 0.00 3.55
3817 4447 2.927028 ACCGAACAAAGCCTTAGTGTT 58.073 42.857 0.00 0.00 38.17 3.32
3818 4448 2.616842 ACCGAACAAAGCCTTAGTGTTG 59.383 45.455 0.00 0.00 35.67 3.33
3823 4453 5.575218 CGAACAAAGCCTTAGTGTTGTTTTT 59.425 36.000 0.00 0.00 42.61 1.94
3863 4493 2.018515 TCTTCGTTTGTTTGGTGGGTC 58.981 47.619 0.00 0.00 0.00 4.46
3876 4506 1.687840 TGGGTCCGTGGGTGGATAG 60.688 63.158 0.00 0.00 40.91 2.08
3979 4610 5.413213 CGGTACCTGGAAATTACATTGACAA 59.587 40.000 10.90 0.00 0.00 3.18
3982 4613 8.311109 GGTACCTGGAAATTACATTGACAATTT 58.689 33.333 4.06 11.08 37.12 1.82
3985 4616 7.872483 ACCTGGAAATTACATTGACAATTTGAC 59.128 33.333 0.00 0.00 35.14 3.18
3986 4617 7.871973 CCTGGAAATTACATTGACAATTTGACA 59.128 33.333 14.22 0.00 35.14 3.58
4062 5010 5.390613 GTCCGTAACTGAAAAATGTGATGG 58.609 41.667 0.00 0.00 0.00 3.51
4082 5030 4.532834 TGGTACTTGAAGGCAAAGAAACT 58.467 39.130 0.00 0.00 32.73 2.66
4106 5075 9.668497 ACTGTCTTTTAATTCCTAATGTACTCC 57.332 33.333 0.00 0.00 0.00 3.85
4123 5092 7.050970 TGTACTCCGTATATCAGAAATTGCT 57.949 36.000 0.00 0.00 0.00 3.91
4124 5093 8.173542 TGTACTCCGTATATCAGAAATTGCTA 57.826 34.615 0.00 0.00 0.00 3.49
4125 5094 8.080417 TGTACTCCGTATATCAGAAATTGCTAC 58.920 37.037 0.00 0.00 0.00 3.58
4126 5095 7.291411 ACTCCGTATATCAGAAATTGCTACT 57.709 36.000 0.00 0.00 0.00 2.57
4128 5097 8.516234 ACTCCGTATATCAGAAATTGCTACTAG 58.484 37.037 0.00 0.00 0.00 2.57
4129 5098 8.405418 TCCGTATATCAGAAATTGCTACTAGT 57.595 34.615 0.00 0.00 0.00 2.57
4209 5178 6.375945 TGGATGACGAAATCAAATACCATG 57.624 37.500 0.00 0.00 41.93 3.66
4247 5216 8.830580 CATTCTCTAAGTTCAGTCTTGTTTTGA 58.169 33.333 0.00 0.00 0.00 2.69
4254 5223 6.376056 GTTCAGTCTTGTTTTGAACACAAC 57.624 37.500 10.68 0.00 46.12 3.32
4279 5248 9.372369 ACTAGCTAGTGTTTACTGAATTTGATC 57.628 33.333 25.52 0.00 37.78 2.92
4281 5250 8.798859 AGCTAGTGTTTACTGAATTTGATCAT 57.201 30.769 0.00 0.00 37.78 2.45
4409 5392 6.548321 TGAGTTCTTTTGTATGGTACCCAAT 58.452 36.000 10.07 0.00 36.95 3.16
4411 5394 7.175990 TGAGTTCTTTTGTATGGTACCCAATTC 59.824 37.037 10.07 0.00 36.95 2.17
4455 5439 5.738909 ACCAGTGTAATCTGAGAATTCTGG 58.261 41.667 14.00 6.55 43.51 3.86
4457 5441 6.157645 ACCAGTGTAATCTGAGAATTCTGGAT 59.842 38.462 14.00 12.89 41.37 3.41
4472 5456 6.838401 ATTCTGGATCTAGGGATGAGTTTT 57.162 37.500 6.21 0.00 31.46 2.43
4482 5466 2.447443 GGATGAGTTTTTGTCCCTCCC 58.553 52.381 0.00 0.00 0.00 4.30
4573 5569 7.011576 GGAGATGCATGCTCATTGATAATAGAG 59.988 40.741 20.33 0.00 34.07 2.43
4583 5579 9.547753 GCTCATTGATAATAGAGTACTGGAAAA 57.452 33.333 0.00 0.00 0.00 2.29
4607 5603 4.278170 TGATCACCAACTAACCAAGCAAAG 59.722 41.667 0.00 0.00 0.00 2.77
4609 5605 2.100584 CACCAACTAACCAAGCAAAGCA 59.899 45.455 0.00 0.00 0.00 3.91
4619 5615 1.070445 CAAGCAAAGCAAATGGGTCCA 59.930 47.619 0.00 0.00 0.00 4.02
4674 5673 2.678580 TCGGTGGCGATCTGGTCA 60.679 61.111 0.00 0.00 0.00 4.02
5076 6075 2.795297 CTCCTCGACCTCTGACGC 59.205 66.667 0.00 0.00 0.00 5.19
5077 6076 3.102107 CTCCTCGACCTCTGACGCG 62.102 68.421 3.53 3.53 0.00 6.01
5082 6104 1.797933 CGACCTCTGACGCGACTTG 60.798 63.158 15.93 4.32 0.00 3.16
5087 6109 1.612469 CTCTGACGCGACTTGCTGTG 61.612 60.000 15.93 0.00 43.27 3.66
5142 6172 0.879765 ATGTTGCTCTGTTGCTGCTC 59.120 50.000 0.00 0.00 0.00 4.26
5190 6220 5.250543 TGGAGTGTTTTCTTAGGGATGATGA 59.749 40.000 0.00 0.00 0.00 2.92
5289 6321 3.254657 GTGTAGAGCATCGAGGCTTCTAT 59.745 47.826 26.96 14.58 45.99 1.98
5290 6322 4.456222 GTGTAGAGCATCGAGGCTTCTATA 59.544 45.833 26.96 20.79 45.99 1.31
5314 6346 7.961326 ACAGAAGCCAATAAACCATCTATTT 57.039 32.000 0.00 0.00 0.00 1.40
5333 6365 5.914898 ATTTGGGTCATTGTAGTTTAGGC 57.085 39.130 0.00 0.00 0.00 3.93
5334 6366 4.374689 TTGGGTCATTGTAGTTTAGGCA 57.625 40.909 0.00 0.00 0.00 4.75
5335 6367 3.950397 TGGGTCATTGTAGTTTAGGCAG 58.050 45.455 0.00 0.00 0.00 4.85
5336 6368 2.683362 GGGTCATTGTAGTTTAGGCAGC 59.317 50.000 0.00 0.00 0.00 5.25
5339 6371 4.142600 GGTCATTGTAGTTTAGGCAGCAAG 60.143 45.833 0.00 0.00 0.00 4.01
5421 6456 2.355209 GCTAGAAGGCTGCTTACCAAGT 60.355 50.000 0.00 0.00 0.00 3.16
5445 6480 0.540830 AGGAGTCTCGTCAAGCCAGT 60.541 55.000 0.00 0.00 0.00 4.00
5563 6600 7.565323 AATCAAAAGCTAGCTCTCCTATTTG 57.435 36.000 22.73 22.73 30.27 2.32
5678 6718 2.094752 GGCCTCGAAGCTTTGCAAATAA 60.095 45.455 13.23 0.00 0.00 1.40
5737 6777 2.289444 GGGTCCGAGATCTCAACAAACA 60.289 50.000 22.31 0.00 0.00 2.83
5841 6882 1.135139 CCATCCGTCGTGATCTTCACT 59.865 52.381 6.13 0.00 44.85 3.41
5852 6893 3.135530 GTGATCTTCACTATCCCTGGCTT 59.864 47.826 0.45 0.00 43.73 4.35
5943 6989 8.952278 GTACTAGTATGGGATCTCACATTAGAG 58.048 40.741 10.14 0.76 40.98 2.43
5964 7010 3.784763 AGGAGACCAATGAGATCAACCAT 59.215 43.478 0.00 0.00 0.00 3.55
5969 7015 7.286316 GGAGACCAATGAGATCAACCATAAAAT 59.714 37.037 0.00 0.00 0.00 1.82
5970 7016 8.599624 AGACCAATGAGATCAACCATAAAATT 57.400 30.769 0.00 0.00 0.00 1.82
5971 7017 9.039165 AGACCAATGAGATCAACCATAAAATTT 57.961 29.630 0.00 0.00 0.00 1.82
5972 7018 9.657419 GACCAATGAGATCAACCATAAAATTTT 57.343 29.630 8.75 8.75 0.00 1.82
5973 7019 9.439500 ACCAATGAGATCAACCATAAAATTTTG 57.561 29.630 13.76 0.00 0.00 2.44
5974 7020 9.439500 CCAATGAGATCAACCATAAAATTTTGT 57.561 29.630 13.76 3.84 0.00 2.83
5997 7043 9.961266 TTGTATTTCGTATTTAGACATTTCGTG 57.039 29.630 0.00 0.00 0.00 4.35
6003 7049 9.749490 TTCGTATTTAGACATTTCGTGAAAATC 57.251 29.630 0.00 1.21 35.32 2.17
6013 7059 9.612620 GACATTTCGTGAAAATCTGAAATTAGT 57.387 29.630 0.00 5.55 38.59 2.24
6029 7075 6.488344 TGAAATTAGTTGACAACATACCTGCA 59.512 34.615 20.08 7.22 0.00 4.41
6032 7078 1.812571 GTTGACAACATACCTGCAGGG 59.187 52.381 35.42 20.74 40.27 4.45
6049 7095 2.100916 CAGGGTATGTCTACAACTCCGG 59.899 54.545 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 1.712056 TCTTCCCTCGTGTTTCCTCA 58.288 50.000 0.00 0.00 0.00 3.86
58 60 3.643237 TCTATGGTCAATCTTCCCTCGT 58.357 45.455 0.00 0.00 0.00 4.18
193 197 0.108804 GGAAGAGTCGACCGCATTCA 60.109 55.000 13.01 0.00 0.00 2.57
408 415 2.651361 CTCCGAGGTCAGCGTTGT 59.349 61.111 0.00 0.00 0.00 3.32
524 532 2.222886 CCTGAATCGTCGTTCATTGCTG 60.223 50.000 9.60 1.17 37.47 4.41
550 558 2.613506 GCGTTTCCCAACTCACCCG 61.614 63.158 0.00 0.00 0.00 5.28
587 595 4.738124 TCACGTGCTTCAATTTGAAACAA 58.262 34.783 14.92 0.00 34.68 2.83
594 602 5.245531 TCCTCTATTCACGTGCTTCAATTT 58.754 37.500 11.67 0.00 0.00 1.82
595 603 4.832248 TCCTCTATTCACGTGCTTCAATT 58.168 39.130 11.67 0.00 0.00 2.32
596 604 4.471904 TCCTCTATTCACGTGCTTCAAT 57.528 40.909 11.67 8.05 0.00 2.57
597 605 3.953712 TCCTCTATTCACGTGCTTCAA 57.046 42.857 11.67 0.00 0.00 2.69
598 606 3.849911 CTTCCTCTATTCACGTGCTTCA 58.150 45.455 11.67 0.00 0.00 3.02
599 607 2.605366 GCTTCCTCTATTCACGTGCTTC 59.395 50.000 11.67 0.00 0.00 3.86
600 608 2.028112 TGCTTCCTCTATTCACGTGCTT 60.028 45.455 11.67 2.75 0.00 3.91
601 609 1.550524 TGCTTCCTCTATTCACGTGCT 59.449 47.619 11.67 2.95 0.00 4.40
602 610 2.010145 TGCTTCCTCTATTCACGTGC 57.990 50.000 11.67 0.00 0.00 5.34
603 611 8.539770 AATATAATGCTTCCTCTATTCACGTG 57.460 34.615 9.94 9.94 0.00 4.49
604 612 9.561069 AAAATATAATGCTTCCTCTATTCACGT 57.439 29.630 0.00 0.00 0.00 4.49
652 660 7.552687 ACATAGCCATCTCGAGTATTTGAAAAA 59.447 33.333 13.13 0.00 0.00 1.94
653 661 7.011389 CACATAGCCATCTCGAGTATTTGAAAA 59.989 37.037 13.13 0.00 0.00 2.29
654 662 6.479990 CACATAGCCATCTCGAGTATTTGAAA 59.520 38.462 13.13 0.00 0.00 2.69
655 663 5.985530 CACATAGCCATCTCGAGTATTTGAA 59.014 40.000 13.13 0.00 0.00 2.69
656 664 5.509670 CCACATAGCCATCTCGAGTATTTGA 60.510 44.000 13.13 0.00 0.00 2.69
657 665 4.687948 CCACATAGCCATCTCGAGTATTTG 59.312 45.833 13.13 5.84 0.00 2.32
658 666 4.262635 CCCACATAGCCATCTCGAGTATTT 60.263 45.833 13.13 0.00 0.00 1.40
659 667 3.259374 CCCACATAGCCATCTCGAGTATT 59.741 47.826 13.13 0.00 0.00 1.89
660 668 2.828520 CCCACATAGCCATCTCGAGTAT 59.171 50.000 13.13 1.87 0.00 2.12
661 669 2.239400 CCCACATAGCCATCTCGAGTA 58.761 52.381 13.13 0.00 0.00 2.59
662 670 1.043816 CCCACATAGCCATCTCGAGT 58.956 55.000 13.13 0.00 0.00 4.18
663 671 0.320247 GCCCACATAGCCATCTCGAG 60.320 60.000 5.93 5.93 0.00 4.04
664 672 0.760567 AGCCCACATAGCCATCTCGA 60.761 55.000 0.00 0.00 0.00 4.04
665 673 0.107456 AAGCCCACATAGCCATCTCG 59.893 55.000 0.00 0.00 0.00 4.04
676 684 4.641645 CGCCACCTCAAGCCCACA 62.642 66.667 0.00 0.00 0.00 4.17
734 742 0.178981 AGTTGTGCTGGACAATGCCT 60.179 50.000 17.67 7.80 46.34 4.75
747 755 5.448632 GGATTATTTTACTCGGGCAGTTGTG 60.449 44.000 0.00 0.00 36.43 3.33
752 760 2.806244 CGGGATTATTTTACTCGGGCAG 59.194 50.000 0.00 0.00 0.00 4.85
802 815 3.119280 CGTGGTTTGGGACTTCACTTTTT 60.119 43.478 0.00 0.00 0.00 1.94
993 1039 2.110967 CGCCTTGTGCATCCTCCTG 61.111 63.158 0.00 0.00 41.33 3.86
1090 1136 3.450115 CGGAGGAGGTCGGGTGAC 61.450 72.222 0.00 0.00 44.72 3.67
1374 1435 2.659610 GTTGAGCCTGGTCTCGCT 59.340 61.111 11.67 0.00 38.27 4.93
1553 1614 0.324091 GGGAGGAGTCGAGGTTGGTA 60.324 60.000 0.00 0.00 0.00 3.25
1633 1716 3.978672 TCATGGATGGATTCAGGAGTGAT 59.021 43.478 0.00 0.00 30.85 3.06
1666 1749 6.455246 CGATCGAGCTAATGAATCATGGATTG 60.455 42.308 10.26 0.00 31.89 2.67
1711 1803 2.697751 AGTACTGACTCATGGATGGAGC 59.302 50.000 0.00 0.00 35.79 4.70
1735 1827 4.228567 GAGCTCCGCCCCTGCTAC 62.229 72.222 0.87 0.00 37.16 3.58
2175 2280 0.533951 TGATCTGCTCATGCGTCAGT 59.466 50.000 0.00 0.00 43.34 3.41
2179 2284 0.461516 CCAGTGATCTGCTCATGCGT 60.462 55.000 0.00 0.00 43.34 5.24
2835 3430 4.021981 ACCCTTGCTTCTAAAATCTGCAAC 60.022 41.667 0.00 0.00 38.49 4.17
3164 3760 2.061773 CTGAATGTCGACACTGGACAC 58.938 52.381 22.71 7.78 46.22 3.67
3192 3811 9.584839 GTTCGAATAAAAACAACATAACGTACT 57.415 29.630 0.00 0.00 0.00 2.73
3193 3812 8.550179 CGTTCGAATAAAAACAACATAACGTAC 58.450 33.333 0.00 0.00 33.35 3.67
3194 3813 7.739477 CCGTTCGAATAAAAACAACATAACGTA 59.261 33.333 0.00 0.00 35.49 3.57
3195 3814 6.574462 CCGTTCGAATAAAAACAACATAACGT 59.426 34.615 0.00 0.00 35.49 3.99
3196 3815 6.450154 GCCGTTCGAATAAAAACAACATAACG 60.450 38.462 0.00 0.00 36.63 3.18
3197 3816 6.183359 GGCCGTTCGAATAAAAACAACATAAC 60.183 38.462 0.00 0.00 0.00 1.89
3202 3821 3.630101 TGGCCGTTCGAATAAAAACAAC 58.370 40.909 0.00 0.00 0.00 3.32
3211 3834 2.040544 CAAGCCTGGCCGTTCGAAT 61.041 57.895 16.57 0.00 0.00 3.34
3213 3836 3.469863 AACAAGCCTGGCCGTTCGA 62.470 57.895 16.57 0.00 0.00 3.71
3237 3860 5.153513 CCAAACACATGATCCAAAAGTACG 58.846 41.667 0.00 0.00 0.00 3.67
3238 3861 5.920273 CACCAAACACATGATCCAAAAGTAC 59.080 40.000 0.00 0.00 0.00 2.73
3278 3908 1.046204 GTATTTCCGGACGGAGGGAT 58.954 55.000 13.64 11.41 46.06 3.85
3279 3909 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3280 3910 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3281 3911 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3282 3912 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3283 3913 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3284 3914 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3285 3915 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3286 3916 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
3287 3917 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
3288 3918 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
3289 3919 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
3290 3920 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
3291 3921 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
3292 3922 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
3293 3923 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
3294 3924 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
3295 3925 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
3296 3926 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
3297 3927 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
3298 3928 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
3299 3929 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
3300 3930 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
3301 3931 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
3302 3932 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
3303 3933 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
3323 3953 8.861086 ACGGATGTATCTAGAACTGAAATACAT 58.139 33.333 11.05 11.05 42.96 2.29
3324 3954 8.234136 ACGGATGTATCTAGAACTGAAATACA 57.766 34.615 0.00 0.00 37.26 2.29
3325 3955 9.530633 AAACGGATGTATCTAGAACTGAAATAC 57.469 33.333 0.00 0.00 0.00 1.89
3327 3957 9.449719 AAAAACGGATGTATCTAGAACTGAAAT 57.550 29.630 0.00 0.00 0.00 2.17
3328 3958 8.842358 AAAAACGGATGTATCTAGAACTGAAA 57.158 30.769 0.00 0.00 0.00 2.69
3330 3960 9.529325 CATAAAAACGGATGTATCTAGAACTGA 57.471 33.333 0.00 0.00 0.00 3.41
3331 3961 8.276325 GCATAAAAACGGATGTATCTAGAACTG 58.724 37.037 0.00 0.00 0.00 3.16
3332 3962 7.985184 TGCATAAAAACGGATGTATCTAGAACT 59.015 33.333 0.00 0.00 0.00 3.01
3333 3963 8.138365 TGCATAAAAACGGATGTATCTAGAAC 57.862 34.615 0.00 0.00 0.00 3.01
3334 3964 8.902540 ATGCATAAAAACGGATGTATCTAGAA 57.097 30.769 0.00 0.00 0.00 2.10
3335 3965 8.902540 AATGCATAAAAACGGATGTATCTAGA 57.097 30.769 0.00 0.00 29.41 2.43
3336 3966 9.599322 GAAATGCATAAAAACGGATGTATCTAG 57.401 33.333 0.00 0.00 29.41 2.43
3337 3967 9.337396 AGAAATGCATAAAAACGGATGTATCTA 57.663 29.630 0.00 0.00 29.41 1.98
3338 3968 8.131100 CAGAAATGCATAAAAACGGATGTATCT 58.869 33.333 0.00 0.00 29.41 1.98
3339 3969 7.096477 GCAGAAATGCATAAAAACGGATGTATC 60.096 37.037 0.00 0.00 29.41 2.24
3340 3970 6.697019 GCAGAAATGCATAAAAACGGATGTAT 59.303 34.615 0.00 0.00 30.71 2.29
3341 3971 6.033341 GCAGAAATGCATAAAAACGGATGTA 58.967 36.000 0.00 0.00 34.41 2.29
3342 3972 4.864247 GCAGAAATGCATAAAAACGGATGT 59.136 37.500 0.00 0.00 34.41 3.06
3343 3973 4.027458 CGCAGAAATGCATAAAAACGGATG 60.027 41.667 0.00 0.00 34.41 3.51
3344 3974 4.104776 CGCAGAAATGCATAAAAACGGAT 58.895 39.130 0.00 0.00 34.41 4.18
3345 3975 3.189495 TCGCAGAAATGCATAAAAACGGA 59.811 39.130 0.00 0.00 34.41 4.69
3346 3976 3.300590 GTCGCAGAAATGCATAAAAACGG 59.699 43.478 0.00 0.00 39.69 4.44
3347 3977 3.911365 TGTCGCAGAAATGCATAAAAACG 59.089 39.130 0.00 2.08 39.69 3.60
3348 3978 5.402270 ACTTGTCGCAGAAATGCATAAAAAC 59.598 36.000 0.00 0.00 39.69 2.43
3349 3979 5.527951 ACTTGTCGCAGAAATGCATAAAAA 58.472 33.333 0.00 0.00 39.69 1.94
3350 3980 5.119931 ACTTGTCGCAGAAATGCATAAAA 57.880 34.783 0.00 0.00 39.69 1.52
3351 3981 4.764679 ACTTGTCGCAGAAATGCATAAA 57.235 36.364 0.00 0.00 39.69 1.40
3352 3982 6.435430 AATACTTGTCGCAGAAATGCATAA 57.565 33.333 0.00 0.00 39.69 1.90
3353 3983 6.435430 AAATACTTGTCGCAGAAATGCATA 57.565 33.333 0.00 0.00 39.69 3.14
3354 3984 4.970662 AATACTTGTCGCAGAAATGCAT 57.029 36.364 0.00 0.00 39.69 3.96
3355 3985 4.379394 GGAAATACTTGTCGCAGAAATGCA 60.379 41.667 0.00 0.00 39.69 3.96
3356 3986 4.098416 GGAAATACTTGTCGCAGAAATGC 58.902 43.478 0.00 0.00 39.69 3.56
3357 3987 4.334443 CGGAAATACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
3358 3988 3.374058 CCGGAAATACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
3359 3989 2.739913 CCGGAAATACTTGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
3360 3990 2.028839 TCCGGAAATACTTGTCGCAGAA 60.029 45.455 0.00 0.00 39.69 3.02
3361 3991 1.546923 TCCGGAAATACTTGTCGCAGA 59.453 47.619 0.00 0.00 0.00 4.26
3362 3992 1.659098 GTCCGGAAATACTTGTCGCAG 59.341 52.381 5.23 0.00 0.00 5.18
3363 3993 1.717194 GTCCGGAAATACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
3364 3994 0.643820 CGTCCGGAAATACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
3365 3995 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3366 3996 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3367 3997 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3368 3998 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3369 3999 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3370 4000 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3371 4001 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3372 4002 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3373 4003 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3374 4004 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3375 4005 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3376 4006 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3377 4007 0.107017 TTAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
3378 4008 1.978454 ATTAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
3379 4009 3.450096 ACAAATTAGTACTCCCTCCGTCC 59.550 47.826 0.00 0.00 0.00 4.79
3380 4010 4.732672 ACAAATTAGTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
3381 4011 4.529377 TGAACAAATTAGTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
3382 4012 5.080969 TGAACAAATTAGTACTCCCTCCG 57.919 43.478 0.00 0.00 0.00 4.63
3383 4013 8.211629 ACATATGAACAAATTAGTACTCCCTCC 58.788 37.037 10.38 0.00 0.00 4.30
3384 4014 9.614792 AACATATGAACAAATTAGTACTCCCTC 57.385 33.333 10.38 0.00 0.00 4.30
3385 4015 9.614792 GAACATATGAACAAATTAGTACTCCCT 57.385 33.333 10.38 0.00 0.00 4.20
3386 4016 9.391006 TGAACATATGAACAAATTAGTACTCCC 57.609 33.333 10.38 0.00 0.00 4.30
3411 4041 3.828451 CCCAGCCATCCCATAGTTAATTG 59.172 47.826 0.00 0.00 0.00 2.32
3435 4065 1.084289 AATTTCCAACTACCGCGCTC 58.916 50.000 5.56 0.00 0.00 5.03
3438 4068 4.093703 TCACAATAATTTCCAACTACCGCG 59.906 41.667 0.00 0.00 0.00 6.46
3472 4102 9.280174 CCCAAGTTTACTGAAGTTGTTATCTAA 57.720 33.333 5.82 0.00 43.94 2.10
3513 4143 8.143193 AGCAATTCTGTAAATCAAACATCAACA 58.857 29.630 0.00 0.00 0.00 3.33
3537 4167 8.994170 GTTCTTATATTTCTGTATGAAGGGAGC 58.006 37.037 0.00 0.00 35.89 4.70
3586 4216 9.645059 CTTTCTGTATGAAGAGTGTTTAGATCA 57.355 33.333 0.00 0.00 35.89 2.92
3587 4217 9.646427 ACTTTCTGTATGAAGAGTGTTTAGATC 57.354 33.333 0.00 0.00 35.89 2.75
3608 4238 9.368674 GTACTCCCTCTGTAAAGAAATACTTTC 57.631 37.037 0.00 0.00 44.36 2.62
3610 4240 8.667592 AGTACTCCCTCTGTAAAGAAATACTT 57.332 34.615 0.00 0.00 40.98 2.24
3611 4241 9.765295 TTAGTACTCCCTCTGTAAAGAAATACT 57.235 33.333 0.00 0.00 0.00 2.12
3612 4242 9.800433 GTTAGTACTCCCTCTGTAAAGAAATAC 57.200 37.037 0.00 0.00 0.00 1.89
3613 4243 8.975295 GGTTAGTACTCCCTCTGTAAAGAAATA 58.025 37.037 0.00 0.00 0.00 1.40
3614 4244 7.456902 TGGTTAGTACTCCCTCTGTAAAGAAAT 59.543 37.037 0.00 0.00 0.00 2.17
3615 4245 6.783977 TGGTTAGTACTCCCTCTGTAAAGAAA 59.216 38.462 0.00 0.00 0.00 2.52
3616 4246 6.317312 TGGTTAGTACTCCCTCTGTAAAGAA 58.683 40.000 0.00 0.00 0.00 2.52
3617 4247 5.895807 TGGTTAGTACTCCCTCTGTAAAGA 58.104 41.667 0.00 0.00 0.00 2.52
3618 4248 6.380274 TCATGGTTAGTACTCCCTCTGTAAAG 59.620 42.308 0.00 0.00 0.00 1.85
3619 4249 6.258354 TCATGGTTAGTACTCCCTCTGTAAA 58.742 40.000 0.00 0.00 0.00 2.01
3620 4250 5.834460 TCATGGTTAGTACTCCCTCTGTAA 58.166 41.667 0.00 0.00 0.00 2.41
3621 4251 5.461516 TCATGGTTAGTACTCCCTCTGTA 57.538 43.478 0.00 0.00 0.00 2.74
3622 4252 4.332683 TCATGGTTAGTACTCCCTCTGT 57.667 45.455 0.00 0.00 0.00 3.41
3623 4253 5.422331 TCTTTCATGGTTAGTACTCCCTCTG 59.578 44.000 0.00 3.85 0.00 3.35
3624 4254 5.590818 TCTTTCATGGTTAGTACTCCCTCT 58.409 41.667 0.00 0.00 0.00 3.69
3625 4255 5.163395 CCTCTTTCATGGTTAGTACTCCCTC 60.163 48.000 0.00 0.00 0.00 4.30
3626 4256 4.717280 CCTCTTTCATGGTTAGTACTCCCT 59.283 45.833 0.00 0.00 0.00 4.20
3627 4257 4.141688 CCCTCTTTCATGGTTAGTACTCCC 60.142 50.000 0.00 1.04 0.00 4.30
3628 4258 4.470304 ACCCTCTTTCATGGTTAGTACTCC 59.530 45.833 0.00 0.00 0.00 3.85
3629 4259 5.678955 ACCCTCTTTCATGGTTAGTACTC 57.321 43.478 0.00 0.00 0.00 2.59
3630 4260 6.449830 AAACCCTCTTTCATGGTTAGTACT 57.550 37.500 0.00 0.00 41.40 2.73
3631 4261 7.520451 AAAAACCCTCTTTCATGGTTAGTAC 57.480 36.000 0.00 0.00 41.40 2.73
3656 4286 3.010138 ACAAGGCCTAAAGATTGCAGGTA 59.990 43.478 5.16 0.00 0.00 3.08
3659 4289 3.426695 CGAACAAGGCCTAAAGATTGCAG 60.427 47.826 5.16 0.00 0.00 4.41
3670 4300 2.978010 CGCAACCGAACAAGGCCT 60.978 61.111 0.00 0.00 36.29 5.19
3672 4302 2.051345 CACGCAACCGAACAAGGC 60.051 61.111 0.00 0.00 38.29 4.35
3673 4303 1.010125 CACACGCAACCGAACAAGG 60.010 57.895 0.00 0.00 38.29 3.61
3674 4304 0.375454 TTCACACGCAACCGAACAAG 59.625 50.000 0.00 0.00 38.29 3.16
3676 4306 0.584396 GATTCACACGCAACCGAACA 59.416 50.000 0.00 0.00 38.29 3.18
3677 4307 0.110373 GGATTCACACGCAACCGAAC 60.110 55.000 0.00 0.00 38.29 3.95
3678 4308 1.561717 CGGATTCACACGCAACCGAA 61.562 55.000 0.00 0.00 42.40 4.30
3679 4309 2.024868 CGGATTCACACGCAACCGA 61.025 57.895 0.00 0.00 42.40 4.69
3680 4310 1.955529 CTCGGATTCACACGCAACCG 61.956 60.000 0.00 0.00 41.39 4.44
3681 4311 0.949105 ACTCGGATTCACACGCAACC 60.949 55.000 0.00 0.00 0.00 3.77
3682 4312 0.163788 CACTCGGATTCACACGCAAC 59.836 55.000 0.00 0.00 0.00 4.17
3683 4313 0.948623 CCACTCGGATTCACACGCAA 60.949 55.000 0.00 0.00 0.00 4.85
3684 4314 1.374125 CCACTCGGATTCACACGCA 60.374 57.895 0.00 0.00 0.00 5.24
3685 4315 1.080093 TCCACTCGGATTCACACGC 60.080 57.895 0.00 0.00 35.91 5.34
3695 4325 0.328258 AACCCCTTCAATCCACTCGG 59.672 55.000 0.00 0.00 0.00 4.63
3696 4326 1.812571 CAAACCCCTTCAATCCACTCG 59.187 52.381 0.00 0.00 0.00 4.18
3697 4327 3.084786 CTCAAACCCCTTCAATCCACTC 58.915 50.000 0.00 0.00 0.00 3.51
3698 4328 2.225117 CCTCAAACCCCTTCAATCCACT 60.225 50.000 0.00 0.00 0.00 4.00
3699 4329 2.171003 CCTCAAACCCCTTCAATCCAC 58.829 52.381 0.00 0.00 0.00 4.02
3700 4330 1.077005 CCCTCAAACCCCTTCAATCCA 59.923 52.381 0.00 0.00 0.00 3.41
3701 4331 1.619704 CCCCTCAAACCCCTTCAATCC 60.620 57.143 0.00 0.00 0.00 3.01
3702 4332 1.619704 CCCCCTCAAACCCCTTCAATC 60.620 57.143 0.00 0.00 0.00 2.67
3703 4333 0.413434 CCCCCTCAAACCCCTTCAAT 59.587 55.000 0.00 0.00 0.00 2.57
3704 4334 0.703056 TCCCCCTCAAACCCCTTCAA 60.703 55.000 0.00 0.00 0.00 2.69
3705 4335 0.479589 ATCCCCCTCAAACCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
3706 4336 0.710588 AATCCCCCTCAAACCCCTTC 59.289 55.000 0.00 0.00 0.00 3.46
3707 4337 1.176182 AAATCCCCCTCAAACCCCTT 58.824 50.000 0.00 0.00 0.00 3.95
3708 4338 2.084121 TAAATCCCCCTCAAACCCCT 57.916 50.000 0.00 0.00 0.00 4.79
3709 4339 2.835764 GTTTAAATCCCCCTCAAACCCC 59.164 50.000 0.00 0.00 0.00 4.95
3710 4340 2.835764 GGTTTAAATCCCCCTCAAACCC 59.164 50.000 3.66 0.00 41.38 4.11
3711 4341 3.767673 GAGGTTTAAATCCCCCTCAAACC 59.232 47.826 14.63 6.45 45.48 3.27
3712 4342 4.673968 AGAGGTTTAAATCCCCCTCAAAC 58.326 43.478 19.38 0.00 44.85 2.93
3713 4343 5.075900 AGAAGAGGTTTAAATCCCCCTCAAA 59.924 40.000 19.38 0.00 44.85 2.69
3714 4344 4.606255 AGAAGAGGTTTAAATCCCCCTCAA 59.394 41.667 19.38 0.00 44.85 3.02
3715 4345 4.183916 AGAAGAGGTTTAAATCCCCCTCA 58.816 43.478 19.38 0.00 44.85 3.86
3716 4346 4.864483 AGAAGAGGTTTAAATCCCCCTC 57.136 45.455 12.53 12.53 43.14 4.30
3717 4347 5.796399 ACTTAGAAGAGGTTTAAATCCCCCT 59.204 40.000 0.00 0.00 0.00 4.79
3718 4348 6.075949 ACTTAGAAGAGGTTTAAATCCCCC 57.924 41.667 0.00 0.00 0.00 5.40
3719 4349 6.718294 TGACTTAGAAGAGGTTTAAATCCCC 58.282 40.000 0.00 0.00 0.00 4.81
3720 4350 8.631480 TTTGACTTAGAAGAGGTTTAAATCCC 57.369 34.615 0.00 0.00 0.00 3.85
3721 4351 9.894783 GTTTTGACTTAGAAGAGGTTTAAATCC 57.105 33.333 0.00 0.00 0.00 3.01
3725 4355 9.621629 TCATGTTTTGACTTAGAAGAGGTTTAA 57.378 29.630 0.00 0.00 0.00 1.52
3726 4356 9.621629 TTCATGTTTTGACTTAGAAGAGGTTTA 57.378 29.630 0.00 0.00 32.84 2.01
3727 4357 8.406297 GTTCATGTTTTGACTTAGAAGAGGTTT 58.594 33.333 0.00 0.00 32.84 3.27
3728 4358 7.013369 GGTTCATGTTTTGACTTAGAAGAGGTT 59.987 37.037 0.00 0.00 32.84 3.50
3729 4359 6.486993 GGTTCATGTTTTGACTTAGAAGAGGT 59.513 38.462 0.00 0.00 32.84 3.85
3730 4360 6.486657 TGGTTCATGTTTTGACTTAGAAGAGG 59.513 38.462 0.00 0.00 32.84 3.69
3731 4361 7.496529 TGGTTCATGTTTTGACTTAGAAGAG 57.503 36.000 0.00 0.00 32.84 2.85
3732 4362 7.873719 TTGGTTCATGTTTTGACTTAGAAGA 57.126 32.000 0.00 0.00 32.84 2.87
3733 4363 7.809806 GGATTGGTTCATGTTTTGACTTAGAAG 59.190 37.037 0.00 0.00 32.84 2.85
3734 4364 7.505585 AGGATTGGTTCATGTTTTGACTTAGAA 59.494 33.333 0.00 0.00 32.84 2.10
3735 4365 7.004086 AGGATTGGTTCATGTTTTGACTTAGA 58.996 34.615 0.00 0.00 32.84 2.10
3736 4366 7.219484 AGGATTGGTTCATGTTTTGACTTAG 57.781 36.000 0.00 0.00 32.84 2.18
3737 4367 7.432869 CAAGGATTGGTTCATGTTTTGACTTA 58.567 34.615 0.00 0.00 43.94 2.24
3738 4368 6.282930 CAAGGATTGGTTCATGTTTTGACTT 58.717 36.000 0.00 0.00 43.94 3.01
3739 4369 5.846203 CAAGGATTGGTTCATGTTTTGACT 58.154 37.500 0.00 0.00 43.94 3.41
3755 4385 1.362237 TGGAGGGGATTTGCAAGGATT 59.638 47.619 0.00 0.00 0.00 3.01
3756 4386 1.009997 TGGAGGGGATTTGCAAGGAT 58.990 50.000 0.00 0.00 0.00 3.24
3757 4387 0.783206 TTGGAGGGGATTTGCAAGGA 59.217 50.000 0.00 0.00 0.00 3.36
3758 4388 1.758862 GATTGGAGGGGATTTGCAAGG 59.241 52.381 0.00 0.00 29.33 3.61
3759 4389 1.758862 GGATTGGAGGGGATTTGCAAG 59.241 52.381 0.00 0.00 29.33 4.01
3760 4390 1.362237 AGGATTGGAGGGGATTTGCAA 59.638 47.619 0.00 0.00 0.00 4.08
3761 4391 1.009997 AGGATTGGAGGGGATTTGCA 58.990 50.000 0.00 0.00 0.00 4.08
3762 4392 1.216427 AGAGGATTGGAGGGGATTTGC 59.784 52.381 0.00 0.00 0.00 3.68
3763 4393 3.294214 CAAGAGGATTGGAGGGGATTTG 58.706 50.000 0.00 0.00 0.00 2.32
3764 4394 2.245806 CCAAGAGGATTGGAGGGGATTT 59.754 50.000 0.12 0.00 42.06 2.17
3765 4395 1.855599 CCAAGAGGATTGGAGGGGATT 59.144 52.381 0.12 0.00 42.06 3.01
3766 4396 1.527457 CCAAGAGGATTGGAGGGGAT 58.473 55.000 0.12 0.00 42.06 3.85
3767 4397 0.624500 CCCAAGAGGATTGGAGGGGA 60.625 60.000 8.20 0.00 42.06 4.81
3768 4398 1.925888 CCCAAGAGGATTGGAGGGG 59.074 63.158 8.20 0.00 42.06 4.79
3769 4399 0.624500 TCCCCAAGAGGATTGGAGGG 60.625 60.000 8.20 2.36 42.06 4.30
3770 4400 0.842635 CTCCCCAAGAGGATTGGAGG 59.157 60.000 8.20 7.77 42.06 4.30
3771 4401 1.767681 CTCTCCCCAAGAGGATTGGAG 59.232 57.143 8.20 0.00 46.73 3.86
3772 4402 1.885049 CTCTCCCCAAGAGGATTGGA 58.115 55.000 8.20 0.00 46.73 3.53
3780 4410 2.116238 CGGTTAATCCTCTCCCCAAGA 58.884 52.381 0.00 0.00 0.00 3.02
3781 4411 2.116238 TCGGTTAATCCTCTCCCCAAG 58.884 52.381 0.00 0.00 0.00 3.61
3782 4412 2.237893 GTTCGGTTAATCCTCTCCCCAA 59.762 50.000 0.00 0.00 0.00 4.12
3783 4413 1.835531 GTTCGGTTAATCCTCTCCCCA 59.164 52.381 0.00 0.00 0.00 4.96
3784 4414 1.835531 TGTTCGGTTAATCCTCTCCCC 59.164 52.381 0.00 0.00 0.00 4.81
3785 4415 3.622166 TTGTTCGGTTAATCCTCTCCC 57.378 47.619 0.00 0.00 0.00 4.30
3786 4416 3.374367 GCTTTGTTCGGTTAATCCTCTCC 59.626 47.826 0.00 0.00 0.00 3.71
3787 4417 3.374367 GGCTTTGTTCGGTTAATCCTCTC 59.626 47.826 0.00 0.00 0.00 3.20
3788 4418 3.009143 AGGCTTTGTTCGGTTAATCCTCT 59.991 43.478 0.00 0.00 0.00 3.69
3789 4419 3.344515 AGGCTTTGTTCGGTTAATCCTC 58.655 45.455 0.00 0.00 0.00 3.71
3790 4420 3.434940 AGGCTTTGTTCGGTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
3791 4421 4.698780 ACTAAGGCTTTGTTCGGTTAATCC 59.301 41.667 4.45 0.00 0.00 3.01
3792 4422 5.180680 ACACTAAGGCTTTGTTCGGTTAATC 59.819 40.000 11.64 0.00 0.00 1.75
3793 4423 5.067954 ACACTAAGGCTTTGTTCGGTTAAT 58.932 37.500 11.64 0.00 0.00 1.40
3794 4424 4.453751 ACACTAAGGCTTTGTTCGGTTAA 58.546 39.130 11.64 0.00 0.00 2.01
3795 4425 4.075963 ACACTAAGGCTTTGTTCGGTTA 57.924 40.909 11.64 0.00 0.00 2.85
3796 4426 2.927028 ACACTAAGGCTTTGTTCGGTT 58.073 42.857 11.64 0.00 0.00 4.44
3797 4427 2.616842 CAACACTAAGGCTTTGTTCGGT 59.383 45.455 11.64 4.72 30.98 4.69
3798 4428 2.616842 ACAACACTAAGGCTTTGTTCGG 59.383 45.455 11.64 6.18 30.98 4.30
3799 4429 3.963383 ACAACACTAAGGCTTTGTTCG 57.037 42.857 11.64 10.73 30.98 3.95
3800 4430 6.961359 AAAAACAACACTAAGGCTTTGTTC 57.039 33.333 11.64 0.00 40.44 3.18
3823 4453 0.472471 AAGTCTGGCTTGTTCGGGAA 59.528 50.000 0.00 0.00 35.80 3.97
3824 4454 0.472471 AAAGTCTGGCTTGTTCGGGA 59.528 50.000 0.00 0.00 37.52 5.14
3863 4493 1.411612 GGAGTAACTATCCACCCACGG 59.588 57.143 0.00 0.00 36.79 4.94
3876 4506 8.085296 CACCAGACATATGATCTAAGGAGTAAC 58.915 40.741 10.38 0.00 0.00 2.50
3979 4610 9.520515 AAGTAGATTTCACCTGTAATGTCAAAT 57.479 29.630 0.00 0.00 0.00 2.32
3982 4613 9.653287 CTTAAGTAGATTTCACCTGTAATGTCA 57.347 33.333 0.00 0.00 0.00 3.58
4062 5010 5.297029 AGACAGTTTCTTTGCCTTCAAGTAC 59.703 40.000 0.00 0.00 33.12 2.73
4082 5030 8.316214 ACGGAGTACATTAGGAATTAAAAGACA 58.684 33.333 0.00 0.00 41.94 3.41
4103 5072 8.516234 ACTAGTAGCAATTTCTGATATACGGAG 58.484 37.037 0.00 0.00 35.15 4.63
4104 5073 8.297426 CACTAGTAGCAATTTCTGATATACGGA 58.703 37.037 0.00 0.00 0.00 4.69
4106 5075 8.906693 CACACTAGTAGCAATTTCTGATATACG 58.093 37.037 0.00 0.00 0.00 3.06
4114 5083 5.466728 CACACACACACTAGTAGCAATTTCT 59.533 40.000 0.00 0.00 0.00 2.52
4176 5145 9.703892 TTTGATTTCGTCATCCAAAACAAATAT 57.296 25.926 0.00 0.00 36.54 1.28
4177 5146 9.703892 ATTTGATTTCGTCATCCAAAACAAATA 57.296 25.926 9.81 0.00 40.41 1.40
4178 5147 8.606040 ATTTGATTTCGTCATCCAAAACAAAT 57.394 26.923 0.00 0.00 38.83 2.32
4179 5148 8.973378 GTATTTGATTTCGTCATCCAAAACAAA 58.027 29.630 0.00 0.00 38.12 2.83
4180 5149 7.596995 GGTATTTGATTTCGTCATCCAAAACAA 59.403 33.333 0.00 0.00 36.54 2.83
4181 5150 7.087639 GGTATTTGATTTCGTCATCCAAAACA 58.912 34.615 0.00 0.00 36.54 2.83
4182 5151 7.087639 TGGTATTTGATTTCGTCATCCAAAAC 58.912 34.615 0.00 0.00 36.54 2.43
4183 5152 7.220741 TGGTATTTGATTTCGTCATCCAAAA 57.779 32.000 0.00 0.00 36.54 2.44
4184 5153 6.825944 TGGTATTTGATTTCGTCATCCAAA 57.174 33.333 0.00 0.00 36.54 3.28
4185 5154 6.376864 ACATGGTATTTGATTTCGTCATCCAA 59.623 34.615 0.00 0.00 36.54 3.53
4186 5155 5.885352 ACATGGTATTTGATTTCGTCATCCA 59.115 36.000 0.00 0.00 36.54 3.41
4187 5156 6.201517 CACATGGTATTTGATTTCGTCATCC 58.798 40.000 0.00 0.00 36.54 3.51
4188 5157 6.201517 CCACATGGTATTTGATTTCGTCATC 58.798 40.000 0.00 0.00 36.54 2.92
4209 5178 8.467598 TGAACTTAGAGAATGACACTATACCAC 58.532 37.037 0.00 0.00 0.00 4.16
4221 5190 8.830580 TCAAAACAAGACTGAACTTAGAGAATG 58.169 33.333 0.00 0.00 0.00 2.67
4227 5196 7.526608 TGTGTTCAAAACAAGACTGAACTTAG 58.473 34.615 13.53 0.00 45.91 2.18
4254 5223 9.371136 TGATCAAATTCAGTAAACACTAGCTAG 57.629 33.333 19.44 19.44 0.00 3.42
4279 5248 4.644103 ATCTCAATTCGGCTTTTCCATG 57.356 40.909 0.00 0.00 34.01 3.66
4281 5250 6.773976 AATTATCTCAATTCGGCTTTTCCA 57.226 33.333 0.00 0.00 34.01 3.53
4409 5392 4.631234 ACTCCATCACATTACTAGGGGAA 58.369 43.478 0.00 0.00 0.00 3.97
4411 5394 4.283722 GGTACTCCATCACATTACTAGGGG 59.716 50.000 0.00 0.00 0.00 4.79
4455 5439 5.126779 GGGACAAAAACTCATCCCTAGATC 58.873 45.833 0.69 0.00 46.43 2.75
4457 5441 4.569719 GGGACAAAAACTCATCCCTAGA 57.430 45.455 0.69 0.00 46.43 2.43
4472 5456 5.898120 TGATTAATTTTCTGGGAGGGACAA 58.102 37.500 0.00 0.00 0.00 3.18
4573 5569 7.361799 GGTTAGTTGGTGATCATTTTCCAGTAC 60.362 40.741 0.00 0.00 0.00 2.73
4583 5579 4.032960 TGCTTGGTTAGTTGGTGATCAT 57.967 40.909 0.00 0.00 0.00 2.45
4584 5580 3.500448 TGCTTGGTTAGTTGGTGATCA 57.500 42.857 0.00 0.00 0.00 2.92
4585 5581 4.798574 CTTTGCTTGGTTAGTTGGTGATC 58.201 43.478 0.00 0.00 0.00 2.92
4586 5582 3.005791 GCTTTGCTTGGTTAGTTGGTGAT 59.994 43.478 0.00 0.00 0.00 3.06
4587 5583 2.360801 GCTTTGCTTGGTTAGTTGGTGA 59.639 45.455 0.00 0.00 0.00 4.02
4609 5605 1.259840 GCCTGCACATGGACCCATTT 61.260 55.000 0.00 0.00 33.90 2.32
4619 5615 1.395635 CACCATGTATGCCTGCACAT 58.604 50.000 0.00 0.00 35.79 3.21
4872 5871 4.357947 GAGACAGGGTGCACGCGA 62.358 66.667 25.95 0.00 0.00 5.87
5076 6075 2.416747 TCAGGATTTCACAGCAAGTCG 58.583 47.619 0.00 0.00 0.00 4.18
5077 6076 3.365767 GCTTCAGGATTTCACAGCAAGTC 60.366 47.826 0.00 0.00 0.00 3.01
5082 6104 3.863142 AATGCTTCAGGATTTCACAGC 57.137 42.857 0.00 0.00 31.89 4.40
5087 6109 7.597386 AGTTCTTGTAAATGCTTCAGGATTTC 58.403 34.615 9.34 3.78 43.45 2.17
5190 6220 8.556213 TGAAATTAAGAGGCGTTACATTACTT 57.444 30.769 0.00 0.00 0.00 2.24
5289 6321 8.902806 CAAATAGATGGTTTATTGGCTTCTGTA 58.097 33.333 0.00 0.00 0.00 2.74
5290 6322 7.147846 CCAAATAGATGGTTTATTGGCTTCTGT 60.148 37.037 0.00 0.00 35.65 3.41
5314 6346 3.872240 GCTGCCTAAACTACAATGACCCA 60.872 47.826 0.00 0.00 0.00 4.51
5421 6456 3.015327 GGCTTGACGAGACTCCTAGTTA 58.985 50.000 0.00 0.00 0.00 2.24
5445 6480 3.064207 GCACTTTGAATGTGACCGACTA 58.936 45.455 14.45 0.00 37.60 2.59
5534 6571 5.417266 AGGAGAGCTAGCTTTTGATTTTTCC 59.583 40.000 20.42 13.52 0.00 3.13
5563 6600 3.126831 CGATTGTGGCTCATCTTAGACC 58.873 50.000 0.00 0.00 0.00 3.85
5678 6718 2.514458 ATCAATGCGGGAAGGAGTTT 57.486 45.000 0.00 0.00 0.00 2.66
5737 6777 0.040058 TTGGGATCATGGTGCAAGCT 59.960 50.000 0.00 0.00 33.76 3.74
5927 6973 3.576550 GGTCTCCTCTAATGTGAGATCCC 59.423 52.174 0.00 0.00 37.47 3.85
5943 6989 3.634397 TGGTTGATCTCATTGGTCTCC 57.366 47.619 0.00 0.00 0.00 3.71
5971 7017 9.961266 CACGAAATGTCTAAATACGAAATACAA 57.039 29.630 0.00 0.00 0.00 2.41
5972 7018 9.356433 TCACGAAATGTCTAAATACGAAATACA 57.644 29.630 0.00 0.00 0.00 2.29
5993 7039 8.148807 TGTCAACTAATTTCAGATTTTCACGA 57.851 30.769 0.00 0.00 0.00 4.35
5994 7040 8.682016 GTTGTCAACTAATTTCAGATTTTCACG 58.318 33.333 8.53 0.00 0.00 4.35
6000 7046 9.520515 AGGTATGTTGTCAACTAATTTCAGATT 57.479 29.630 16.45 0.00 0.00 2.40
6001 7047 8.950210 CAGGTATGTTGTCAACTAATTTCAGAT 58.050 33.333 16.45 1.62 0.00 2.90
6003 7049 7.023575 GCAGGTATGTTGTCAACTAATTTCAG 58.976 38.462 16.45 2.23 0.00 3.02
6013 7059 2.198827 CCCTGCAGGTATGTTGTCAA 57.801 50.000 30.63 0.00 0.00 3.18
6029 7075 2.024655 TCCGGAGTTGTAGACATACCCT 60.025 50.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.