Multiple sequence alignment - TraesCS6B01G115900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G115900 chr6B 100.000 2639 0 0 1 2639 101223789 101221151 0.000000e+00 4874.0
1 TraesCS6B01G115900 chr6B 92.222 180 10 2 362 537 265720121 265719942 4.360000e-63 252.0
2 TraesCS6B01G115900 chr6B 94.565 92 5 0 2472 2563 646944558 646944649 2.740000e-30 143.0
3 TraesCS6B01G115900 chr6B 90.323 62 3 3 2576 2634 44496619 44496680 7.830000e-11 78.7
4 TraesCS6B01G115900 chrUn 93.053 1166 48 20 543 1678 69375965 69374803 0.000000e+00 1674.0
5 TraesCS6B01G115900 chrUn 90.076 393 29 6 1978 2360 69373021 69372629 3.920000e-138 501.0
6 TraesCS6B01G115900 chrUn 92.090 354 27 1 7 360 69376316 69375964 5.070000e-137 497.0
7 TraesCS6B01G115900 chrUn 85.091 275 35 3 1678 1949 69373526 69373255 2.590000e-70 276.0
8 TraesCS6B01G115900 chrUn 100.000 34 0 0 2559 2592 16697314 16697281 2.190000e-06 63.9
9 TraesCS6B01G115900 chrUn 100.000 34 0 0 2559 2592 141671724 141671691 2.190000e-06 63.9
10 TraesCS6B01G115900 chrUn 92.500 40 3 0 1951 1990 201678012 201678051 1.020000e-04 58.4
11 TraesCS6B01G115900 chr6A 91.983 1185 50 23 537 1679 55013150 55014331 0.000000e+00 1620.0
12 TraesCS6B01G115900 chr6A 91.002 489 34 6 1975 2453 55014827 55015315 0.000000e+00 651.0
13 TraesCS6B01G115900 chr6A 88.187 364 37 4 1 360 55012796 55013157 1.880000e-116 429.0
14 TraesCS6B01G115900 chr6A 92.222 180 9 3 362 536 109973769 109973948 1.570000e-62 250.0
15 TraesCS6B01G115900 chr6A 93.617 94 6 0 2474 2567 473616528 473616621 9.850000e-30 141.0
16 TraesCS6B01G115900 chr3D 93.258 178 7 3 364 536 51673534 51673711 9.370000e-65 257.0
17 TraesCS6B01G115900 chr3D 92.265 181 9 3 362 537 533955694 533955514 4.360000e-63 252.0
18 TraesCS6B01G115900 chr3D 100.000 45 0 0 2591 2635 531565049 531565093 1.680000e-12 84.2
19 TraesCS6B01G115900 chr3D 90.909 44 4 0 1842 1885 545788888 545788931 2.840000e-05 60.2
20 TraesCS6B01G115900 chr3D 100.000 32 0 0 2561 2592 557638254 557638285 2.840000e-05 60.2
21 TraesCS6B01G115900 chr2D 91.935 186 10 3 357 537 537187727 537187912 3.370000e-64 255.0
22 TraesCS6B01G115900 chr2B 93.182 176 8 3 362 533 118465638 118465813 3.370000e-64 255.0
23 TraesCS6B01G115900 chr2B 92.265 181 8 3 362 536 771215317 771215137 4.360000e-63 252.0
24 TraesCS6B01G115900 chr2B 92.135 178 12 1 362 537 142632257 142632080 1.570000e-62 250.0
25 TraesCS6B01G115900 chr2B 93.750 96 6 0 2477 2572 703710646 703710551 7.610000e-31 145.0
26 TraesCS6B01G115900 chr2B 94.565 92 5 0 2473 2564 56512982 56512891 2.740000e-30 143.0
27 TraesCS6B01G115900 chr2B 92.727 55 3 1 2580 2634 195645355 195645302 7.830000e-11 78.7
28 TraesCS6B01G115900 chr2B 82.500 80 12 2 1804 1882 529691578 529691500 4.710000e-08 69.4
29 TraesCS6B01G115900 chr2B 94.737 38 2 0 1951 1988 276270509 276270546 2.840000e-05 60.2
30 TraesCS6B01G115900 chr2B 92.500 40 3 0 1951 1990 34387813 34387852 1.020000e-04 58.4
31 TraesCS6B01G115900 chr1B 92.265 181 9 3 362 537 77437229 77437049 4.360000e-63 252.0
32 TraesCS6B01G115900 chr4B 93.617 94 6 0 2471 2564 142696671 142696578 9.850000e-30 141.0
33 TraesCS6B01G115900 chr4B 92.784 97 6 1 2471 2566 519352546 519352450 3.540000e-29 139.0
34 TraesCS6B01G115900 chr4B 92.500 40 3 0 1951 1990 53328796 53328835 1.020000e-04 58.4
35 TraesCS6B01G115900 chr1A 93.617 94 6 0 2470 2563 98249527 98249434 9.850000e-30 141.0
36 TraesCS6B01G115900 chr1A 100.000 32 0 0 2561 2592 459191813 459191782 2.840000e-05 60.2
37 TraesCS6B01G115900 chr7D 94.444 90 5 0 2477 2566 542092354 542092265 3.540000e-29 139.0
38 TraesCS6B01G115900 chr7D 100.000 32 0 0 2561 2592 582177994 582178025 2.840000e-05 60.2
39 TraesCS6B01G115900 chr7D 92.683 41 1 2 1951 1990 101440607 101440568 1.020000e-04 58.4
40 TraesCS6B01G115900 chr2A 92.000 100 6 2 2473 2571 227632702 227632604 3.540000e-29 139.0
41 TraesCS6B01G115900 chr6D 83.562 146 24 0 1805 1950 274343323 274343178 1.270000e-28 137.0
42 TraesCS6B01G115900 chr6D 97.917 48 1 0 2590 2637 439163936 439163983 1.680000e-12 84.2
43 TraesCS6B01G115900 chr5B 100.000 45 0 0 2590 2634 81213598 81213642 1.680000e-12 84.2
44 TraesCS6B01G115900 chr5B 97.872 47 1 0 2591 2637 606638716 606638762 6.050000e-12 82.4
45 TraesCS6B01G115900 chr5B 92.593 54 3 1 2584 2637 54876038 54875986 2.820000e-10 76.8
46 TraesCS6B01G115900 chr5B 86.441 59 8 0 1835 1893 487251666 487251608 6.100000e-07 65.8
47 TraesCS6B01G115900 chr5B 85.484 62 8 1 1804 1865 669678642 669678582 2.190000e-06 63.9
48 TraesCS6B01G115900 chr5B 86.538 52 5 2 1829 1879 491602244 491602294 3.670000e-04 56.5
49 TraesCS6B01G115900 chr5B 90.698 43 3 1 1951 1993 582269876 582269835 3.670000e-04 56.5
50 TraesCS6B01G115900 chr5B 88.636 44 5 0 1951 1994 533413960 533413917 1.000000e-03 54.7
51 TraesCS6B01G115900 chr5D 97.872 47 1 0 2591 2637 369285324 369285278 6.050000e-12 82.4
52 TraesCS6B01G115900 chr5D 75.373 134 30 3 1762 1893 406356814 406356682 7.890000e-06 62.1
53 TraesCS6B01G115900 chr4D 96.000 50 2 0 2588 2637 483583329 483583280 6.050000e-12 82.4
54 TraesCS6B01G115900 chr4A 94.872 39 1 1 1951 1989 524314009 524314046 2.840000e-05 60.2
55 TraesCS6B01G115900 chr4A 100.000 32 0 0 2561 2592 719791529 719791498 2.840000e-05 60.2
56 TraesCS6B01G115900 chr3B 100.000 32 0 0 2561 2592 827238560 827238591 2.840000e-05 60.2
57 TraesCS6B01G115900 chr3B 100.000 32 0 0 2561 2592 827749540 827749571 2.840000e-05 60.2
58 TraesCS6B01G115900 chr3B 90.698 43 3 1 1951 1993 752238262 752238221 3.670000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G115900 chr6B 101221151 101223789 2638 True 4874 4874 100.000000 1 2639 1 chr6B.!!$R1 2638
1 TraesCS6B01G115900 chrUn 69372629 69376316 3687 True 737 1674 90.077500 7 2360 4 chrUn.!!$R3 2353
2 TraesCS6B01G115900 chr6A 55012796 55015315 2519 False 900 1620 90.390667 1 2453 3 chr6A.!!$F3 2452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 856 0.259938 ATCCAGGTCCTCCCATTTGC 59.74 55.0 0.0 0.0 34.66 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 3760 0.03831 GGAGGGAGGGTGGAGTTTTG 59.962 60.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.418910 CGACATCCTCCTGGAGCGT 61.419 63.158 18.51 13.87 46.91 5.07
28 29 2.711922 CCTGGAGCGTCGCTAAGGT 61.712 63.158 28.44 7.81 39.88 3.50
34 35 2.430244 CGTCGCTAAGGTGCACGT 60.430 61.111 11.45 8.83 34.95 4.49
44 45 1.154169 GGTGCACGTCGTGTCGATA 60.154 57.895 25.18 5.89 38.42 2.92
70 71 1.971695 GGCCCTACACCAACAGCAC 60.972 63.158 0.00 0.00 0.00 4.40
74 75 0.534877 CCTACACCAACAGCACTGCA 60.535 55.000 3.30 0.00 0.00 4.41
102 107 6.985059 GTCCCTCCACACAATAAGATAGTAAC 59.015 42.308 0.00 0.00 0.00 2.50
118 123 4.494091 AGTAACAAGGATGGATGGAGTG 57.506 45.455 0.00 0.00 0.00 3.51
129 134 3.173151 TGGATGGAGTGAGAGTAAGCAA 58.827 45.455 0.00 0.00 0.00 3.91
177 182 6.641169 ATCTCTCGATGTAATCTGCAACTA 57.359 37.500 0.00 0.00 42.58 2.24
289 294 0.598065 CAAAGGAACCCCGAAAGCTG 59.402 55.000 0.00 0.00 37.58 4.24
346 351 3.643792 CCCCGAGAAATTCATAGAGGTCT 59.356 47.826 0.00 0.00 0.00 3.85
376 381 2.322658 AGAACGGGTCTGTTTAGGACA 58.677 47.619 0.00 0.00 34.29 4.02
377 382 2.036862 AGAACGGGTCTGTTTAGGACAC 59.963 50.000 0.00 0.00 34.29 3.67
378 383 1.416243 ACGGGTCTGTTTAGGACACA 58.584 50.000 0.00 0.00 36.98 3.72
379 384 1.975680 ACGGGTCTGTTTAGGACACAT 59.024 47.619 0.00 0.00 36.98 3.21
380 385 2.028385 ACGGGTCTGTTTAGGACACATC 60.028 50.000 0.00 0.00 36.98 3.06
381 386 2.233922 CGGGTCTGTTTAGGACACATCT 59.766 50.000 0.00 0.00 36.98 2.90
382 387 3.446161 CGGGTCTGTTTAGGACACATCTA 59.554 47.826 0.00 0.00 36.98 1.98
383 388 4.440250 CGGGTCTGTTTAGGACACATCTAG 60.440 50.000 0.00 0.00 36.98 2.43
384 389 4.710375 GGGTCTGTTTAGGACACATCTAGA 59.290 45.833 0.00 0.00 37.11 2.43
385 390 5.364157 GGGTCTGTTTAGGACACATCTAGAT 59.636 44.000 0.00 0.00 37.11 1.98
386 391 6.276847 GGTCTGTTTAGGACACATCTAGATG 58.723 44.000 27.63 27.63 44.15 2.90
414 419 8.306313 ACATAGTTATGTCACATCTAACCTGA 57.694 34.615 0.00 0.00 42.96 3.86
415 420 8.928448 ACATAGTTATGTCACATCTAACCTGAT 58.072 33.333 0.00 0.00 42.96 2.90
416 421 9.201127 CATAGTTATGTCACATCTAACCTGATG 57.799 37.037 0.00 0.00 46.61 3.07
426 431 6.808008 CATCTAACCTGATGTTCACTTTGT 57.192 37.500 0.00 0.00 39.05 2.83
427 432 7.206981 CATCTAACCTGATGTTCACTTTGTT 57.793 36.000 0.00 0.00 39.05 2.83
428 433 7.651808 CATCTAACCTGATGTTCACTTTGTTT 58.348 34.615 0.00 0.00 39.05 2.83
429 434 8.783093 CATCTAACCTGATGTTCACTTTGTTTA 58.217 33.333 0.00 0.00 39.05 2.01
430 435 8.918202 TCTAACCTGATGTTCACTTTGTTTAT 57.082 30.769 0.00 0.00 38.42 1.40
431 436 8.783093 TCTAACCTGATGTTCACTTTGTTTATG 58.217 33.333 0.00 0.00 38.42 1.90
432 437 6.331369 ACCTGATGTTCACTTTGTTTATGG 57.669 37.500 0.00 0.00 0.00 2.74
433 438 5.833131 ACCTGATGTTCACTTTGTTTATGGT 59.167 36.000 0.00 0.00 0.00 3.55
434 439 7.001674 ACCTGATGTTCACTTTGTTTATGGTA 58.998 34.615 0.00 0.00 0.00 3.25
435 440 7.669722 ACCTGATGTTCACTTTGTTTATGGTAT 59.330 33.333 0.00 0.00 0.00 2.73
436 441 8.522830 CCTGATGTTCACTTTGTTTATGGTATT 58.477 33.333 0.00 0.00 0.00 1.89
437 442 9.912634 CTGATGTTCACTTTGTTTATGGTATTT 57.087 29.630 0.00 0.00 0.00 1.40
481 486 9.518906 TTCTTGTTGCTGCATTATATATTTGTG 57.481 29.630 1.84 0.00 0.00 3.33
482 487 8.901793 TCTTGTTGCTGCATTATATATTTGTGA 58.098 29.630 1.84 0.00 0.00 3.58
483 488 9.177304 CTTGTTGCTGCATTATATATTTGTGAG 57.823 33.333 1.84 0.00 0.00 3.51
484 489 8.449251 TGTTGCTGCATTATATATTTGTGAGA 57.551 30.769 1.84 0.00 0.00 3.27
485 490 8.562052 TGTTGCTGCATTATATATTTGTGAGAG 58.438 33.333 1.84 0.00 0.00 3.20
486 491 7.137490 TGCTGCATTATATATTTGTGAGAGC 57.863 36.000 0.00 0.00 0.00 4.09
487 492 6.938596 TGCTGCATTATATATTTGTGAGAGCT 59.061 34.615 0.00 0.00 0.00 4.09
488 493 7.446319 TGCTGCATTATATATTTGTGAGAGCTT 59.554 33.333 0.00 0.00 0.00 3.74
489 494 8.939929 GCTGCATTATATATTTGTGAGAGCTTA 58.060 33.333 0.00 0.00 0.00 3.09
500 505 8.830201 ATTTGTGAGAGCTTAGATGTGATATC 57.170 34.615 0.00 0.00 0.00 1.63
501 506 6.338214 TGTGAGAGCTTAGATGTGATATCC 57.662 41.667 0.00 0.00 0.00 2.59
502 507 6.073981 TGTGAGAGCTTAGATGTGATATCCT 58.926 40.000 0.00 0.00 0.00 3.24
503 508 6.552725 TGTGAGAGCTTAGATGTGATATCCTT 59.447 38.462 0.00 0.00 0.00 3.36
504 509 7.725844 TGTGAGAGCTTAGATGTGATATCCTTA 59.274 37.037 0.00 0.00 0.00 2.69
505 510 8.580720 GTGAGAGCTTAGATGTGATATCCTTAA 58.419 37.037 0.00 0.00 0.00 1.85
506 511 9.147732 TGAGAGCTTAGATGTGATATCCTTAAA 57.852 33.333 0.00 0.00 0.00 1.52
507 512 9.988815 GAGAGCTTAGATGTGATATCCTTAAAA 57.011 33.333 0.00 0.00 0.00 1.52
536 541 9.591792 CATCTAGATGTGAATTAGACAAACTGA 57.408 33.333 22.42 0.00 34.23 3.41
537 542 8.988064 TCTAGATGTGAATTAGACAAACTGAC 57.012 34.615 0.00 0.00 0.00 3.51
538 543 8.035394 TCTAGATGTGAATTAGACAAACTGACC 58.965 37.037 0.00 0.00 0.00 4.02
539 544 5.940470 AGATGTGAATTAGACAAACTGACCC 59.060 40.000 0.00 0.00 0.00 4.46
540 545 5.042463 TGTGAATTAGACAAACTGACCCA 57.958 39.130 0.00 0.00 0.00 4.51
550 555 3.815401 ACAAACTGACCCAGAAATTCTCG 59.185 43.478 0.00 0.00 35.18 4.04
582 587 7.044052 GCCAAATATTTGAAAATACTGCTCGTC 60.044 37.037 26.32 1.89 40.55 4.20
640 645 3.547214 CGTGCGTACTTTGTGTGGAAAAT 60.547 43.478 1.24 0.00 0.00 1.82
708 727 6.262496 TCGATTAACTCTTCGATACCACTGAT 59.738 38.462 0.00 0.00 39.29 2.90
761 782 1.228769 TGGACGTACCAGCTGAGGT 60.229 57.895 17.39 8.32 44.64 3.85
762 783 1.248785 TGGACGTACCAGCTGAGGTC 61.249 60.000 17.39 16.53 44.64 3.85
763 784 0.966370 GGACGTACCAGCTGAGGTCT 60.966 60.000 17.39 0.00 42.06 3.85
764 785 0.452585 GACGTACCAGCTGAGGTCTC 59.547 60.000 17.39 0.00 42.06 3.36
765 786 0.966370 ACGTACCAGCTGAGGTCTCC 60.966 60.000 17.39 0.00 42.06 3.71
766 787 0.965866 CGTACCAGCTGAGGTCTCCA 60.966 60.000 17.39 0.00 42.06 3.86
767 788 1.490574 GTACCAGCTGAGGTCTCCAT 58.509 55.000 17.39 0.00 42.06 3.41
768 789 1.410882 GTACCAGCTGAGGTCTCCATC 59.589 57.143 17.39 0.00 42.06 3.51
770 791 0.979709 CCAGCTGAGGTCTCCATCCA 60.980 60.000 17.39 0.00 0.00 3.41
816 856 0.259938 ATCCAGGTCCTCCCATTTGC 59.740 55.000 0.00 0.00 34.66 3.68
937 978 2.967615 GACAGATAAGGCGCGCCC 60.968 66.667 44.47 29.67 36.58 6.13
1020 1064 2.798847 CCACTAGCATCATCATCACACG 59.201 50.000 0.00 0.00 0.00 4.49
1021 1065 2.220363 CACTAGCATCATCATCACACGC 59.780 50.000 0.00 0.00 0.00 5.34
1476 1521 3.918591 TCGAAGTTCGAACTTAGATGCAC 59.081 43.478 35.33 23.85 46.90 4.57
1602 1649 0.599991 ATGCGCACTTTCGTCTGTCA 60.600 50.000 14.90 0.00 0.00 3.58
1613 1663 4.855715 TTCGTCTGTCAAGTGATCTTCT 57.144 40.909 0.00 0.00 0.00 2.85
1642 1693 0.249699 AACCGATCACAACGCTGACA 60.250 50.000 0.00 0.00 0.00 3.58
1666 1717 1.549170 GGGGACTATTGTCTGTCACGT 59.451 52.381 7.24 0.00 42.54 4.49
1671 1722 4.201891 GGACTATTGTCTGTCACGTCGTAT 60.202 45.833 7.24 0.00 42.54 3.06
1687 3030 5.469421 ACGTCGTATTGGGTAAACAAAATCA 59.531 36.000 0.00 0.00 33.48 2.57
1699 3042 6.366061 GGTAAACAAAATCACCTGATCTTTGC 59.634 38.462 15.44 5.70 36.79 3.68
1728 3071 1.207329 GAGCATCTACAACCGAACCCT 59.793 52.381 0.00 0.00 0.00 4.34
1734 3077 3.299503 TCTACAACCGAACCCTATACCC 58.700 50.000 0.00 0.00 0.00 3.69
1738 3081 2.739132 CGAACCCTATACCCGCCC 59.261 66.667 0.00 0.00 0.00 6.13
1754 3097 0.898326 GCCCCAAAAGTCCGGACAAT 60.898 55.000 35.00 21.19 0.00 2.71
1755 3098 1.627864 CCCCAAAAGTCCGGACAATT 58.372 50.000 35.00 25.44 0.00 2.32
1772 3115 2.063015 ATTTGCCCGGTCAGTGTCCA 62.063 55.000 0.00 0.00 0.00 4.02
1773 3116 2.674563 TTTGCCCGGTCAGTGTCCAG 62.675 60.000 0.00 0.00 0.00 3.86
1775 3118 2.657237 CCCGGTCAGTGTCCAGAC 59.343 66.667 0.00 0.00 0.00 3.51
1776 3119 2.207229 CCCGGTCAGTGTCCAGACA 61.207 63.158 0.00 0.00 39.32 3.41
1789 3132 3.692101 TGTCCAGACACAAAAACGACATT 59.308 39.130 0.00 0.00 36.21 2.71
1795 3138 5.113975 CAGACACAAAAACGACATTCAATCG 59.886 40.000 0.00 0.00 45.17 3.34
1809 3152 0.683973 CAATCGGCCTCTCCATAGCT 59.316 55.000 0.00 0.00 34.01 3.32
1818 3161 1.144503 CTCTCCATAGCTGGCCCAAAT 59.855 52.381 0.00 0.00 42.80 2.32
1819 3162 2.373169 CTCTCCATAGCTGGCCCAAATA 59.627 50.000 0.00 0.00 42.80 1.40
1820 3163 2.988859 TCTCCATAGCTGGCCCAAATAT 59.011 45.455 0.00 0.00 42.80 1.28
1849 3192 3.563512 GGCACTCCCCATATCCGT 58.436 61.111 0.00 0.00 0.00 4.69
1850 3193 1.371558 GGCACTCCCCATATCCGTC 59.628 63.158 0.00 0.00 0.00 4.79
1870 3213 1.538047 CCAAATCTGGGGCGGATATG 58.462 55.000 0.00 0.00 39.30 1.78
1898 3241 4.904466 GACGCGTCCAGGTACATT 57.096 55.556 28.61 0.00 0.00 2.71
1901 3244 2.514013 CGCGTCCAGGTACATTCGC 61.514 63.158 0.00 10.13 40.19 4.70
1903 3246 1.876714 CGTCCAGGTACATTCGCCG 60.877 63.158 0.00 0.00 0.00 6.46
1929 3272 2.039787 TGACGGATAGGGCCCACA 59.960 61.111 27.56 12.31 0.00 4.17
1933 3276 2.063979 CGGATAGGGCCCACACAGA 61.064 63.158 27.56 1.22 0.00 3.41
1971 3314 3.361158 CATTGGCGCAACGGGTCA 61.361 61.111 10.83 0.00 0.00 4.02
1972 3315 2.361104 ATTGGCGCAACGGGTCAT 60.361 55.556 10.83 0.00 28.70 3.06
2025 3573 2.280628 CCATCCCAGTAGCTTTTCGAC 58.719 52.381 0.00 0.00 0.00 4.20
2069 3619 1.073098 ACCTCCTTCGGGGTGAATTT 58.927 50.000 0.00 0.00 35.63 1.82
2089 3639 1.904144 TGCCGATAGAAACTCGTTCG 58.096 50.000 0.00 0.00 41.52 3.95
2145 3695 3.243907 GGATGTCACTAGTATCAGCACCC 60.244 52.174 13.83 0.00 0.00 4.61
2178 3728 8.737175 GGGGTAAATAAGGAAGAAAAGTAGTTG 58.263 37.037 0.00 0.00 0.00 3.16
2207 3757 2.526432 TGTCTTTACGCCTTCTCCTCT 58.474 47.619 0.00 0.00 0.00 3.69
2208 3758 3.693807 TGTCTTTACGCCTTCTCCTCTA 58.306 45.455 0.00 0.00 0.00 2.43
2210 3760 3.022406 TCTTTACGCCTTCTCCTCTACC 58.978 50.000 0.00 0.00 0.00 3.18
2212 3762 2.519771 TACGCCTTCTCCTCTACCAA 57.480 50.000 0.00 0.00 0.00 3.67
2220 3773 4.563786 CCTTCTCCTCTACCAAAACTCCAC 60.564 50.000 0.00 0.00 0.00 4.02
2286 3844 8.100791 TGAAAGCCTAGAAATAGTGTGTGTTAT 58.899 33.333 0.00 0.00 0.00 1.89
2301 3859 4.331717 GTGTGTTATGGTCTCCATTAACCG 59.668 45.833 6.59 0.00 42.23 4.44
2303 3861 3.118186 TGTTATGGTCTCCATTAACCGGG 60.118 47.826 6.32 0.00 42.23 5.73
2329 3887 1.341209 TGCATGATCTACCTGCTACCG 59.659 52.381 0.00 0.00 40.04 4.02
2338 3896 0.909623 ACCTGCTACCGCATAAGGTT 59.090 50.000 0.00 0.00 46.74 3.50
2357 3915 2.457366 TCTCCCGTTCTTCAAGCTTC 57.543 50.000 0.00 0.00 0.00 3.86
2383 3941 8.848474 TCTAGCTTAAAGCATAGAGTTTGTTT 57.152 30.769 0.00 0.00 45.56 2.83
2420 3978 1.541310 CCCACAACGGCAGACTCCTA 61.541 60.000 0.00 0.00 0.00 2.94
2422 3980 1.673033 CCACAACGGCAGACTCCTAAG 60.673 57.143 0.00 0.00 0.00 2.18
2435 3993 5.066764 CAGACTCCTAAGCACCTCTAGTTAC 59.933 48.000 0.00 0.00 0.00 2.50
2469 4027 9.553064 TTTTATTTTCATGTTTGTTATGCCTGT 57.447 25.926 0.00 0.00 0.00 4.00
2470 4028 9.553064 TTTATTTTCATGTTTGTTATGCCTGTT 57.447 25.926 0.00 0.00 0.00 3.16
2473 4031 7.938563 TTTCATGTTTGTTATGCCTGTTAAC 57.061 32.000 0.00 0.00 0.00 2.01
2474 4032 6.641169 TCATGTTTGTTATGCCTGTTAACA 57.359 33.333 8.28 8.28 37.68 2.41
2475 4033 7.225784 TCATGTTTGTTATGCCTGTTAACAT 57.774 32.000 9.13 0.00 38.84 2.71
2476 4034 7.089538 TCATGTTTGTTATGCCTGTTAACATG 58.910 34.615 9.13 15.26 46.21 3.21
2477 4035 6.398234 TGTTTGTTATGCCTGTTAACATGT 57.602 33.333 9.13 0.00 38.84 3.21
2478 4036 7.511959 TGTTTGTTATGCCTGTTAACATGTA 57.488 32.000 9.13 6.43 38.84 2.29
2479 4037 7.364200 TGTTTGTTATGCCTGTTAACATGTAC 58.636 34.615 9.13 0.00 38.84 2.90
2480 4038 7.229707 TGTTTGTTATGCCTGTTAACATGTACT 59.770 33.333 9.13 0.03 38.84 2.73
2481 4039 6.978343 TGTTATGCCTGTTAACATGTACTC 57.022 37.500 9.13 1.77 35.27 2.59
2482 4040 5.878116 TGTTATGCCTGTTAACATGTACTCC 59.122 40.000 9.13 0.00 35.27 3.85
2483 4041 3.343941 TGCCTGTTAACATGTACTCCC 57.656 47.619 9.13 0.00 0.00 4.30
2484 4042 2.910319 TGCCTGTTAACATGTACTCCCT 59.090 45.455 9.13 0.00 0.00 4.20
2485 4043 3.055385 TGCCTGTTAACATGTACTCCCTC 60.055 47.826 9.13 0.00 0.00 4.30
2486 4044 3.681874 GCCTGTTAACATGTACTCCCTCC 60.682 52.174 9.13 0.00 0.00 4.30
2487 4045 3.430374 CCTGTTAACATGTACTCCCTCCG 60.430 52.174 9.13 0.00 0.00 4.63
2488 4046 3.167485 TGTTAACATGTACTCCCTCCGT 58.833 45.455 3.59 0.00 0.00 4.69
2489 4047 3.579586 TGTTAACATGTACTCCCTCCGTT 59.420 43.478 3.59 0.00 0.00 4.44
2490 4048 4.179298 GTTAACATGTACTCCCTCCGTTC 58.821 47.826 0.00 0.00 0.00 3.95
2491 4049 2.233305 ACATGTACTCCCTCCGTTCT 57.767 50.000 0.00 0.00 0.00 3.01
2492 4050 3.377253 ACATGTACTCCCTCCGTTCTA 57.623 47.619 0.00 0.00 0.00 2.10
2493 4051 3.705051 ACATGTACTCCCTCCGTTCTAA 58.295 45.455 0.00 0.00 0.00 2.10
2494 4052 4.091549 ACATGTACTCCCTCCGTTCTAAA 58.908 43.478 0.00 0.00 0.00 1.85
2495 4053 4.529377 ACATGTACTCCCTCCGTTCTAAAA 59.471 41.667 0.00 0.00 0.00 1.52
2496 4054 5.189145 ACATGTACTCCCTCCGTTCTAAAAT 59.811 40.000 0.00 0.00 0.00 1.82
2497 4055 6.381994 ACATGTACTCCCTCCGTTCTAAAATA 59.618 38.462 0.00 0.00 0.00 1.40
2498 4056 6.461110 TGTACTCCCTCCGTTCTAAAATAG 57.539 41.667 0.00 0.00 0.00 1.73
2499 4057 6.189859 TGTACTCCCTCCGTTCTAAAATAGA 58.810 40.000 0.00 0.00 0.00 1.98
2500 4058 6.837568 TGTACTCCCTCCGTTCTAAAATAGAT 59.162 38.462 0.00 0.00 34.22 1.98
2501 4059 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
2502 4060 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
2503 4061 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
2504 4062 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
2505 4063 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
2506 4064 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
2507 4065 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
2508 4066 7.222999 CCTCCGTTCTAAAATAGATGACTCAAC 59.777 40.741 0.00 0.00 34.22 3.18
2509 4067 7.837863 TCCGTTCTAAAATAGATGACTCAACT 58.162 34.615 0.00 0.00 34.22 3.16
2510 4068 8.311836 TCCGTTCTAAAATAGATGACTCAACTT 58.688 33.333 0.00 0.00 34.22 2.66
2511 4069 8.936864 CCGTTCTAAAATAGATGACTCAACTTT 58.063 33.333 0.00 0.00 34.22 2.66
2549 4107 9.778741 AGTACAAAGTTGAGTCATCTATTTTGA 57.221 29.630 15.99 3.46 38.91 2.69
2552 4110 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
2553 4111 8.895845 CAAAGTTGAGTCATCTATTTTGAAACG 58.104 33.333 4.14 0.00 38.91 3.60
2554 4112 7.962964 AGTTGAGTCATCTATTTTGAAACGA 57.037 32.000 1.70 0.00 0.00 3.85
2555 4113 8.378172 AGTTGAGTCATCTATTTTGAAACGAA 57.622 30.769 1.70 0.00 0.00 3.85
2556 4114 8.499162 AGTTGAGTCATCTATTTTGAAACGAAG 58.501 33.333 1.70 0.00 0.00 3.79
2557 4115 7.364522 TGAGTCATCTATTTTGAAACGAAGG 57.635 36.000 0.00 0.00 0.00 3.46
2558 4116 7.158697 TGAGTCATCTATTTTGAAACGAAGGA 58.841 34.615 0.00 0.00 0.00 3.36
2559 4117 7.659799 TGAGTCATCTATTTTGAAACGAAGGAA 59.340 33.333 0.00 0.00 0.00 3.36
2560 4118 8.034058 AGTCATCTATTTTGAAACGAAGGAAG 57.966 34.615 0.00 0.00 0.00 3.46
2561 4119 7.661847 AGTCATCTATTTTGAAACGAAGGAAGT 59.338 33.333 0.00 0.00 0.00 3.01
2562 4120 8.932791 GTCATCTATTTTGAAACGAAGGAAGTA 58.067 33.333 0.00 0.00 0.00 2.24
2563 4121 8.932791 TCATCTATTTTGAAACGAAGGAAGTAC 58.067 33.333 0.00 0.00 0.00 2.73
2564 4122 7.662604 TCTATTTTGAAACGAAGGAAGTACC 57.337 36.000 0.00 0.00 39.35 3.34
2565 4123 7.218614 TCTATTTTGAAACGAAGGAAGTACCA 58.781 34.615 0.00 0.00 42.04 3.25
2566 4124 6.702716 ATTTTGAAACGAAGGAAGTACCAA 57.297 33.333 0.00 0.00 42.04 3.67
2567 4125 5.744666 TTTGAAACGAAGGAAGTACCAAG 57.255 39.130 0.00 0.00 42.04 3.61
2568 4126 3.135994 TGAAACGAAGGAAGTACCAAGC 58.864 45.455 0.00 0.00 42.04 4.01
2569 4127 2.922740 AACGAAGGAAGTACCAAGCA 57.077 45.000 0.00 0.00 42.04 3.91
2570 4128 2.922740 ACGAAGGAAGTACCAAGCAA 57.077 45.000 0.00 0.00 42.04 3.91
2571 4129 3.418684 ACGAAGGAAGTACCAAGCAAT 57.581 42.857 0.00 0.00 42.04 3.56
2572 4130 3.751518 ACGAAGGAAGTACCAAGCAATT 58.248 40.909 0.00 0.00 42.04 2.32
2573 4131 3.502211 ACGAAGGAAGTACCAAGCAATTG 59.498 43.478 0.00 0.00 42.04 2.32
2588 4146 4.813296 GCAATTGGTATGCTACTGTACC 57.187 45.455 7.72 0.00 40.64 3.34
2589 4147 4.196193 GCAATTGGTATGCTACTGTACCA 58.804 43.478 7.72 0.36 46.37 3.25
2595 4153 6.216801 TGGTATGCTACTGTACCAAACTAG 57.783 41.667 1.98 0.00 45.39 2.57
2596 4154 5.953548 TGGTATGCTACTGTACCAAACTAGA 59.046 40.000 0.00 0.00 45.39 2.43
2597 4155 6.610020 TGGTATGCTACTGTACCAAACTAGAT 59.390 38.462 0.00 0.00 45.39 1.98
2598 4156 7.146648 GGTATGCTACTGTACCAAACTAGATC 58.853 42.308 0.00 0.00 40.07 2.75
2599 4157 5.244785 TGCTACTGTACCAAACTAGATCG 57.755 43.478 0.00 0.00 0.00 3.69
2600 4158 4.097437 TGCTACTGTACCAAACTAGATCGG 59.903 45.833 0.00 0.00 0.00 4.18
2601 4159 4.499357 GCTACTGTACCAAACTAGATCGGG 60.499 50.000 0.00 0.00 0.00 5.14
2602 4160 3.705051 ACTGTACCAAACTAGATCGGGA 58.295 45.455 0.00 0.00 0.00 5.14
2603 4161 4.287552 ACTGTACCAAACTAGATCGGGAT 58.712 43.478 0.00 0.00 0.00 3.85
2604 4162 4.341520 ACTGTACCAAACTAGATCGGGATC 59.658 45.833 0.00 0.31 38.09 3.36
2605 4163 3.317149 TGTACCAAACTAGATCGGGATCG 59.683 47.826 0.00 0.00 42.48 3.69
2606 4164 1.068741 ACCAAACTAGATCGGGATCGC 59.931 52.381 0.00 0.00 42.48 4.58
2607 4165 1.409412 CAAACTAGATCGGGATCGCG 58.591 55.000 24.78 24.78 42.48 5.87
2608 4166 0.318784 AAACTAGATCGGGATCGCGC 60.319 55.000 25.77 13.73 42.48 6.86
2609 4167 2.143594 AACTAGATCGGGATCGCGCC 62.144 60.000 25.77 18.94 42.48 6.53
2610 4168 2.282251 TAGATCGGGATCGCGCCT 60.282 61.111 25.77 23.90 42.48 5.52
2611 4169 1.867919 CTAGATCGGGATCGCGCCTT 61.868 60.000 25.77 15.29 42.48 4.35
2612 4170 2.142357 TAGATCGGGATCGCGCCTTG 62.142 60.000 25.77 1.28 42.48 3.61
2613 4171 4.609018 ATCGGGATCGCGCCTTGG 62.609 66.667 25.77 0.54 36.13 3.61
2634 4192 3.728373 GAGGGTGCCGGTCCCAAT 61.728 66.667 29.22 15.84 46.82 3.16
2635 4193 2.285818 AGGGTGCCGGTCCCAATA 60.286 61.111 29.22 0.00 46.82 1.90
2636 4194 1.696314 AGGGTGCCGGTCCCAATAT 60.696 57.895 29.22 12.94 46.82 1.28
2637 4195 1.228154 GGGTGCCGGTCCCAATATC 60.228 63.158 25.06 3.66 44.05 1.63
2638 4196 1.228154 GGTGCCGGTCCCAATATCC 60.228 63.158 1.90 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.439644 GACGCTCCAGGAGGATGTC 59.560 63.158 18.83 7.01 44.70 3.06
5 6 2.626255 TAGCGACGCTCCAGGAGGAT 62.626 60.000 28.21 2.49 44.70 3.24
19 20 2.126618 CGACGTGCACCTTAGCGA 60.127 61.111 12.15 0.00 37.31 4.93
28 29 2.603652 CCATATATCGACACGACGTGCA 60.604 50.000 27.11 12.25 39.18 4.57
34 35 1.271379 GCCCACCATATATCGACACGA 59.729 52.381 0.00 0.00 41.13 4.35
102 107 2.770802 ACTCTCACTCCATCCATCCTTG 59.229 50.000 0.00 0.00 0.00 3.61
118 123 8.677300 TCATCAACCATTTATTTGCTTACTCTC 58.323 33.333 0.00 0.00 0.00 3.20
177 182 5.205056 TGACACCATTTCCCAAACTACTTT 58.795 37.500 0.00 0.00 0.00 2.66
205 210 1.723003 GACACCGGTTGTTGATACGTC 59.277 52.381 2.97 1.58 39.17 4.34
302 307 2.025155 TCGGCTTAAGTTTGGTTGCAA 58.975 42.857 4.02 0.00 0.00 4.08
357 362 2.224113 TGTGTCCTAAACAGACCCGTTC 60.224 50.000 0.00 0.00 38.97 3.95
358 363 1.764134 TGTGTCCTAAACAGACCCGTT 59.236 47.619 0.00 0.00 38.97 4.44
359 364 1.416243 TGTGTCCTAAACAGACCCGT 58.584 50.000 0.00 0.00 38.97 5.28
360 365 2.233922 AGATGTGTCCTAAACAGACCCG 59.766 50.000 0.00 0.00 38.97 5.28
361 366 3.983044 AGATGTGTCCTAAACAGACCC 57.017 47.619 0.00 0.00 38.97 4.46
362 367 5.916661 TCTAGATGTGTCCTAAACAGACC 57.083 43.478 0.00 0.00 38.97 3.85
390 395 9.201127 CATCAGGTTAGATGTGACATAACTATG 57.799 37.037 10.13 9.49 40.35 2.23
404 409 7.823745 AAACAAAGTGAACATCAGGTTAGAT 57.176 32.000 0.00 0.00 40.63 1.98
405 410 8.783093 CATAAACAAAGTGAACATCAGGTTAGA 58.217 33.333 0.00 0.00 40.63 2.10
406 411 8.023128 CCATAAACAAAGTGAACATCAGGTTAG 58.977 37.037 0.00 0.00 40.63 2.34
407 412 7.504238 ACCATAAACAAAGTGAACATCAGGTTA 59.496 33.333 0.00 0.00 40.63 2.85
408 413 6.323739 ACCATAAACAAAGTGAACATCAGGTT 59.676 34.615 0.00 0.00 44.10 3.50
409 414 5.833131 ACCATAAACAAAGTGAACATCAGGT 59.167 36.000 0.00 0.00 0.00 4.00
410 415 6.331369 ACCATAAACAAAGTGAACATCAGG 57.669 37.500 0.00 0.00 0.00 3.86
411 416 9.912634 AAATACCATAAACAAAGTGAACATCAG 57.087 29.630 0.00 0.00 0.00 2.90
455 460 9.518906 CACAAATATATAATGCAGCAACAAGAA 57.481 29.630 0.00 0.00 0.00 2.52
456 461 8.901793 TCACAAATATATAATGCAGCAACAAGA 58.098 29.630 0.00 0.00 0.00 3.02
457 462 9.177304 CTCACAAATATATAATGCAGCAACAAG 57.823 33.333 0.00 0.00 0.00 3.16
458 463 8.901793 TCTCACAAATATATAATGCAGCAACAA 58.098 29.630 0.00 0.00 0.00 2.83
459 464 8.449251 TCTCACAAATATATAATGCAGCAACA 57.551 30.769 0.00 0.00 0.00 3.33
460 465 7.536622 GCTCTCACAAATATATAATGCAGCAAC 59.463 37.037 0.00 0.00 0.00 4.17
461 466 7.446319 AGCTCTCACAAATATATAATGCAGCAA 59.554 33.333 0.00 0.00 0.00 3.91
462 467 6.938596 AGCTCTCACAAATATATAATGCAGCA 59.061 34.615 0.00 0.00 0.00 4.41
463 468 7.375106 AGCTCTCACAAATATATAATGCAGC 57.625 36.000 0.00 0.00 0.00 5.25
474 479 9.920133 GATATCACATCTAAGCTCTCACAAATA 57.080 33.333 0.00 0.00 0.00 1.40
475 480 7.877097 GGATATCACATCTAAGCTCTCACAAAT 59.123 37.037 4.83 0.00 0.00 2.32
476 481 7.070447 AGGATATCACATCTAAGCTCTCACAAA 59.930 37.037 4.83 0.00 0.00 2.83
477 482 6.552725 AGGATATCACATCTAAGCTCTCACAA 59.447 38.462 4.83 0.00 0.00 3.33
478 483 6.073981 AGGATATCACATCTAAGCTCTCACA 58.926 40.000 4.83 0.00 0.00 3.58
479 484 6.588719 AGGATATCACATCTAAGCTCTCAC 57.411 41.667 4.83 0.00 0.00 3.51
480 485 8.712228 TTAAGGATATCACATCTAAGCTCTCA 57.288 34.615 4.83 0.00 0.00 3.27
481 486 9.988815 TTTTAAGGATATCACATCTAAGCTCTC 57.011 33.333 4.83 0.00 0.00 3.20
510 515 9.591792 TCAGTTTGTCTAATTCACATCTAGATG 57.408 33.333 27.63 27.63 44.15 2.90
511 516 9.593134 GTCAGTTTGTCTAATTCACATCTAGAT 57.407 33.333 0.00 0.00 0.00 1.98
512 517 8.035394 GGTCAGTTTGTCTAATTCACATCTAGA 58.965 37.037 0.00 0.00 0.00 2.43
513 518 7.278868 GGGTCAGTTTGTCTAATTCACATCTAG 59.721 40.741 0.00 0.00 0.00 2.43
514 519 7.103641 GGGTCAGTTTGTCTAATTCACATCTA 58.896 38.462 0.00 0.00 0.00 1.98
515 520 5.940470 GGGTCAGTTTGTCTAATTCACATCT 59.060 40.000 0.00 0.00 0.00 2.90
516 521 5.705441 TGGGTCAGTTTGTCTAATTCACATC 59.295 40.000 0.00 0.00 0.00 3.06
517 522 5.630121 TGGGTCAGTTTGTCTAATTCACAT 58.370 37.500 0.00 0.00 0.00 3.21
518 523 5.042463 TGGGTCAGTTTGTCTAATTCACA 57.958 39.130 0.00 0.00 0.00 3.58
519 524 5.305585 TCTGGGTCAGTTTGTCTAATTCAC 58.694 41.667 0.00 0.00 32.61 3.18
520 525 5.560722 TCTGGGTCAGTTTGTCTAATTCA 57.439 39.130 0.00 0.00 32.61 2.57
521 526 6.877611 TTTCTGGGTCAGTTTGTCTAATTC 57.122 37.500 0.00 0.00 32.61 2.17
522 527 7.725844 AGAATTTCTGGGTCAGTTTGTCTAATT 59.274 33.333 0.00 0.00 32.61 1.40
523 528 7.234355 AGAATTTCTGGGTCAGTTTGTCTAAT 58.766 34.615 0.00 0.00 32.61 1.73
524 529 6.601332 AGAATTTCTGGGTCAGTTTGTCTAA 58.399 36.000 0.00 0.00 32.61 2.10
525 530 6.187727 AGAATTTCTGGGTCAGTTTGTCTA 57.812 37.500 0.00 0.00 32.61 2.59
526 531 5.053978 AGAATTTCTGGGTCAGTTTGTCT 57.946 39.130 0.00 0.00 32.61 3.41
527 532 4.083802 CGAGAATTTCTGGGTCAGTTTGTC 60.084 45.833 3.03 0.00 32.61 3.18
528 533 3.815401 CGAGAATTTCTGGGTCAGTTTGT 59.185 43.478 3.03 0.00 32.61 2.83
529 534 3.365364 GCGAGAATTTCTGGGTCAGTTTG 60.365 47.826 3.03 0.00 32.61 2.93
530 535 2.814336 GCGAGAATTTCTGGGTCAGTTT 59.186 45.455 3.03 0.00 32.61 2.66
531 536 2.427506 GCGAGAATTTCTGGGTCAGTT 58.572 47.619 3.03 0.00 32.61 3.16
532 537 1.673033 CGCGAGAATTTCTGGGTCAGT 60.673 52.381 0.00 0.00 32.61 3.41
533 538 1.002366 CGCGAGAATTTCTGGGTCAG 58.998 55.000 0.00 0.00 0.00 3.51
534 539 0.391130 CCGCGAGAATTTCTGGGTCA 60.391 55.000 8.23 0.00 0.00 4.02
535 540 0.108329 TCCGCGAGAATTTCTGGGTC 60.108 55.000 8.23 0.00 0.00 4.46
536 541 0.541863 ATCCGCGAGAATTTCTGGGT 59.458 50.000 8.23 0.00 0.00 4.51
537 542 0.940126 CATCCGCGAGAATTTCTGGG 59.060 55.000 8.23 2.83 0.00 4.45
538 543 0.305922 GCATCCGCGAGAATTTCTGG 59.694 55.000 8.23 3.70 0.00 3.86
539 544 0.305922 GGCATCCGCGAGAATTTCTG 59.694 55.000 8.23 0.00 39.92 3.02
540 545 0.107703 TGGCATCCGCGAGAATTTCT 60.108 50.000 8.23 0.00 39.92 2.52
550 555 5.989551 ATTTTCAAATATTTGGCATCCGC 57.010 34.783 24.40 0.00 38.66 5.54
640 645 3.699038 GGGTGTTCAGGCATAGCATTTTA 59.301 43.478 0.00 0.00 0.00 1.52
672 677 6.747739 CGAAGAGTTAATCGAGACAAAGATGA 59.252 38.462 0.00 0.00 41.43 2.92
673 678 6.747739 TCGAAGAGTTAATCGAGACAAAGATG 59.252 38.462 0.00 0.00 42.61 2.90
674 679 6.853720 TCGAAGAGTTAATCGAGACAAAGAT 58.146 36.000 0.00 0.00 42.61 2.40
675 680 6.250344 TCGAAGAGTTAATCGAGACAAAGA 57.750 37.500 0.00 0.00 42.61 2.52
708 727 5.865085 AGTAAACAGAAGTGCCTTCACATA 58.135 37.500 14.76 3.24 45.49 2.29
723 744 3.379372 CCATGATGCCCAAGAGTAAACAG 59.621 47.826 0.00 0.00 0.00 3.16
755 776 1.118838 GACCTGGATGGAGACCTCAG 58.881 60.000 0.00 0.00 39.71 3.35
756 777 0.325671 GGACCTGGATGGAGACCTCA 60.326 60.000 0.00 0.00 39.71 3.86
758 779 0.326048 CTGGACCTGGATGGAGACCT 60.326 60.000 0.00 0.00 39.71 3.85
759 780 0.325671 TCTGGACCTGGATGGAGACC 60.326 60.000 0.00 0.00 39.71 3.85
761 782 2.342406 TTTCTGGACCTGGATGGAGA 57.658 50.000 0.00 0.00 39.71 3.71
762 783 2.158696 GGATTTCTGGACCTGGATGGAG 60.159 54.545 0.00 0.00 39.71 3.86
763 784 1.846439 GGATTTCTGGACCTGGATGGA 59.154 52.381 0.00 0.00 39.71 3.41
764 785 1.475751 CGGATTTCTGGACCTGGATGG 60.476 57.143 0.00 0.00 42.93 3.51
765 786 1.959042 CGGATTTCTGGACCTGGATG 58.041 55.000 0.00 0.00 0.00 3.51
766 787 0.181350 GCGGATTTCTGGACCTGGAT 59.819 55.000 0.00 0.00 0.00 3.41
767 788 1.198094 TGCGGATTTCTGGACCTGGA 61.198 55.000 0.00 0.00 0.00 3.86
768 789 0.107017 ATGCGGATTTCTGGACCTGG 60.107 55.000 0.00 0.00 0.00 4.45
770 791 0.181350 GGATGCGGATTTCTGGACCT 59.819 55.000 0.00 0.00 0.00 3.85
816 856 1.746517 GCTGGGGTACGGTGGATAG 59.253 63.158 0.00 0.00 0.00 2.08
963 1004 3.551846 CGGGGCTATTTGGTTATGAAGT 58.448 45.455 0.00 0.00 0.00 3.01
1020 1064 4.521062 ACGATCTGCGCTGGGAGC 62.521 66.667 14.70 8.86 46.04 4.70
1021 1065 2.279120 GACGATCTGCGCTGGGAG 60.279 66.667 14.70 8.13 46.04 4.30
1297 1341 1.545706 GGCTCCCCTTCTTGACGTCT 61.546 60.000 17.92 0.00 0.00 4.18
1465 1510 1.026718 GCGGCCTTGTGCATCTAAGT 61.027 55.000 0.00 0.00 43.89 2.24
1510 1555 3.314553 ACAACAACATTAGAGACCGTCG 58.685 45.455 0.00 0.00 0.00 5.12
1589 1636 4.950050 AAGATCACTTGACAGACGAAAGT 58.050 39.130 0.00 0.00 40.51 2.66
1602 1649 6.148480 CGGTTCATTTTCAGAGAAGATCACTT 59.852 38.462 0.00 0.00 39.24 3.16
1613 1663 4.084066 CGTTGTGATCGGTTCATTTTCAGA 60.084 41.667 0.00 0.00 36.54 3.27
1642 1693 3.452627 GTGACAGACAATAGTCCCCTGAT 59.547 47.826 0.00 0.00 46.15 2.90
1653 1704 3.250744 CCAATACGACGTGACAGACAAT 58.749 45.455 11.56 0.00 0.00 2.71
1666 1717 6.005198 AGGTGATTTTGTTTACCCAATACGA 58.995 36.000 0.00 0.00 33.67 3.43
1671 1722 6.074648 AGATCAGGTGATTTTGTTTACCCAA 58.925 36.000 0.00 0.00 34.37 4.12
1687 3030 5.976458 CTCTTAGAAGAGCAAAGATCAGGT 58.024 41.667 6.36 0.00 45.26 4.00
1722 3065 1.347243 TTGGGGCGGGTATAGGGTTC 61.347 60.000 0.00 0.00 0.00 3.62
1723 3066 0.920271 TTTGGGGCGGGTATAGGGTT 60.920 55.000 0.00 0.00 0.00 4.11
1728 3071 0.547553 GGACTTTTGGGGCGGGTATA 59.452 55.000 0.00 0.00 0.00 1.47
1734 3077 3.053896 GTCCGGACTTTTGGGGCG 61.054 66.667 27.64 0.00 0.00 6.13
1738 3081 2.403259 GCAAATTGTCCGGACTTTTGG 58.597 47.619 36.81 28.00 36.53 3.28
1754 3097 2.112297 GGACACTGACCGGGCAAA 59.888 61.111 13.37 0.00 0.00 3.68
1755 3098 3.164977 TGGACACTGACCGGGCAA 61.165 61.111 13.37 0.00 0.00 4.52
1772 3115 5.204833 CGATTGAATGTCGTTTTTGTGTCT 58.795 37.500 0.00 0.00 34.56 3.41
1773 3116 4.378616 CCGATTGAATGTCGTTTTTGTGTC 59.621 41.667 0.00 0.00 37.39 3.67
1775 3118 3.119463 GCCGATTGAATGTCGTTTTTGTG 59.881 43.478 0.00 0.00 37.39 3.33
1776 3119 3.305110 GCCGATTGAATGTCGTTTTTGT 58.695 40.909 0.00 0.00 37.39 2.83
1777 3120 2.661195 GGCCGATTGAATGTCGTTTTTG 59.339 45.455 0.00 0.00 37.39 2.44
1785 3128 0.911769 TGGAGAGGCCGATTGAATGT 59.088 50.000 0.00 0.00 40.66 2.71
1789 3132 0.681733 GCTATGGAGAGGCCGATTGA 59.318 55.000 0.00 0.00 40.66 2.57
1809 3152 0.182537 CAGTCCGGATATTTGGGCCA 59.817 55.000 7.81 0.00 0.00 5.36
1887 3230 1.216977 CACGGCGAATGTACCTGGA 59.783 57.895 16.62 0.00 0.00 3.86
1890 3233 1.153901 CGACACGGCGAATGTACCT 60.154 57.895 16.62 0.00 0.00 3.08
1903 3246 0.381089 CCTATCCGTCAGTCCGACAC 59.619 60.000 0.40 0.00 45.70 3.67
1929 3272 1.289380 GGTCTCTCCGCGTTTCTGT 59.711 57.895 4.92 0.00 0.00 3.41
1953 3296 4.114997 GACCCGTTGCGCCAATGG 62.115 66.667 18.38 18.38 46.70 3.16
1955 3298 2.361104 ATGACCCGTTGCGCCAAT 60.361 55.556 4.18 0.00 0.00 3.16
1956 3299 2.173758 TAGATGACCCGTTGCGCCAA 62.174 55.000 4.18 0.00 0.00 4.52
1957 3300 2.572095 CTAGATGACCCGTTGCGCCA 62.572 60.000 4.18 0.00 0.00 5.69
1958 3301 1.883084 CTAGATGACCCGTTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
1960 3303 0.108804 ACACTAGATGACCCGTTGCG 60.109 55.000 0.00 0.00 0.00 4.85
1963 3306 7.341256 TCTTCTATAAACACTAGATGACCCGTT 59.659 37.037 0.00 0.00 29.39 4.44
1964 3307 6.832384 TCTTCTATAAACACTAGATGACCCGT 59.168 38.462 0.00 0.00 29.39 5.28
1971 3314 8.432805 CCCAATGGTCTTCTATAAACACTAGAT 58.567 37.037 0.00 0.00 0.00 1.98
1972 3315 7.622081 TCCCAATGGTCTTCTATAAACACTAGA 59.378 37.037 0.00 0.00 0.00 2.43
2004 3552 1.209504 TCGAAAAGCTACTGGGATGGG 59.790 52.381 0.00 0.00 0.00 4.00
2030 3578 6.825721 GGAGGTTTAGAGCCCATAATGATATG 59.174 42.308 0.00 0.00 38.93 1.78
2038 3586 2.698797 CGAAGGAGGTTTAGAGCCCATA 59.301 50.000 0.00 0.00 0.00 2.74
2069 3619 2.256174 CGAACGAGTTTCTATCGGCAA 58.744 47.619 0.00 0.00 44.36 4.52
2089 3639 1.270252 CCCAAAGGTGACCATGCAAAC 60.270 52.381 3.63 0.00 0.00 2.93
2145 3695 1.210967 TCCTTATTTACCCCTGTGGCG 59.789 52.381 0.00 0.00 37.83 5.69
2178 3728 7.254692 GGAGAAGGCGTAAAGACATTTATTACC 60.255 40.741 0.00 0.00 33.57 2.85
2186 3736 3.100671 AGAGGAGAAGGCGTAAAGACAT 58.899 45.455 0.00 0.00 0.00 3.06
2195 3745 2.028020 AGTTTTGGTAGAGGAGAAGGCG 60.028 50.000 0.00 0.00 0.00 5.52
2207 3757 1.069775 GGGAGGGTGGAGTTTTGGTA 58.930 55.000 0.00 0.00 0.00 3.25
2208 3758 0.701310 AGGGAGGGTGGAGTTTTGGT 60.701 55.000 0.00 0.00 0.00 3.67
2210 3760 0.038310 GGAGGGAGGGTGGAGTTTTG 59.962 60.000 0.00 0.00 0.00 2.44
2212 3762 0.547954 GAGGAGGGAGGGTGGAGTTT 60.548 60.000 0.00 0.00 0.00 2.66
2220 3773 2.422093 GCAATTAGTTGAGGAGGGAGGG 60.422 54.545 1.56 0.00 37.53 4.30
2251 3804 5.670792 TTTCTAGGCTTTCATAGAACGGA 57.329 39.130 0.00 0.00 37.66 4.69
2252 3805 7.169982 CACTATTTCTAGGCTTTCATAGAACGG 59.830 40.741 0.00 0.00 37.66 4.44
2253 3806 7.707035 ACACTATTTCTAGGCTTTCATAGAACG 59.293 37.037 0.00 0.00 37.66 3.95
2254 3807 8.821894 CACACTATTTCTAGGCTTTCATAGAAC 58.178 37.037 0.00 0.00 37.66 3.01
2255 3808 8.540388 ACACACTATTTCTAGGCTTTCATAGAA 58.460 33.333 0.00 0.00 36.48 2.10
2256 3809 7.981789 CACACACTATTTCTAGGCTTTCATAGA 59.018 37.037 0.00 0.00 0.00 1.98
2257 3810 7.766278 ACACACACTATTTCTAGGCTTTCATAG 59.234 37.037 0.00 0.00 0.00 2.23
2259 3812 6.476378 ACACACACTATTTCTAGGCTTTCAT 58.524 36.000 0.00 0.00 0.00 2.57
2286 3844 1.202099 TGCCCGGTTAATGGAGACCA 61.202 55.000 0.00 0.00 38.19 4.02
2301 3859 2.961062 AGGTAGATCATGCAAATTGCCC 59.039 45.455 15.98 6.52 44.23 5.36
2329 3887 2.693267 AGAACGGGAGAACCTTATGC 57.307 50.000 0.00 0.00 36.97 3.14
2338 3896 1.971357 AGAAGCTTGAAGAACGGGAGA 59.029 47.619 2.10 0.00 0.00 3.71
2357 3915 8.485976 AACAAACTCTATGCTTTAAGCTAGAG 57.514 34.615 29.63 29.63 44.83 2.43
2383 3941 1.073284 GGGACAACCAAGTTAGCAGGA 59.927 52.381 0.00 0.00 39.85 3.86
2408 3966 1.153549 GGTGCTTAGGAGTCTGCCG 60.154 63.158 0.00 0.00 0.00 5.69
2453 4011 6.991938 ACATGTTAACAGGCATAACAAACAT 58.008 32.000 19.55 6.07 44.02 2.71
2454 4012 6.398234 ACATGTTAACAGGCATAACAAACA 57.602 33.333 19.55 4.30 44.02 2.83
2455 4013 7.590279 AGTACATGTTAACAGGCATAACAAAC 58.410 34.615 19.55 5.99 44.02 2.93
2456 4014 7.094549 GGAGTACATGTTAACAGGCATAACAAA 60.095 37.037 19.55 0.00 44.02 2.83
2457 4015 6.373216 GGAGTACATGTTAACAGGCATAACAA 59.627 38.462 19.55 0.00 44.02 2.83
2458 4016 5.878116 GGAGTACATGTTAACAGGCATAACA 59.122 40.000 19.55 11.28 44.69 2.41
2459 4017 5.296035 GGGAGTACATGTTAACAGGCATAAC 59.704 44.000 19.55 12.44 34.55 1.89
2460 4018 5.190925 AGGGAGTACATGTTAACAGGCATAA 59.809 40.000 19.55 1.04 0.00 1.90
2461 4019 4.719773 AGGGAGTACATGTTAACAGGCATA 59.280 41.667 19.55 3.49 0.00 3.14
2462 4020 3.523564 AGGGAGTACATGTTAACAGGCAT 59.476 43.478 19.55 6.20 0.00 4.40
2463 4021 2.910319 AGGGAGTACATGTTAACAGGCA 59.090 45.455 19.55 4.48 0.00 4.75
2464 4022 3.532542 GAGGGAGTACATGTTAACAGGC 58.467 50.000 19.55 5.06 0.00 4.85
2465 4023 3.430374 CGGAGGGAGTACATGTTAACAGG 60.430 52.174 18.17 18.17 0.00 4.00
2466 4024 3.194968 ACGGAGGGAGTACATGTTAACAG 59.805 47.826 14.65 8.70 0.00 3.16
2467 4025 3.167485 ACGGAGGGAGTACATGTTAACA 58.833 45.455 11.41 11.41 0.00 2.41
2468 4026 3.881937 ACGGAGGGAGTACATGTTAAC 57.118 47.619 2.30 0.00 0.00 2.01
2469 4027 4.091549 AGAACGGAGGGAGTACATGTTAA 58.908 43.478 2.30 0.00 0.00 2.01
2470 4028 3.705051 AGAACGGAGGGAGTACATGTTA 58.295 45.455 2.30 0.00 0.00 2.41
2471 4029 2.537143 AGAACGGAGGGAGTACATGTT 58.463 47.619 2.30 0.00 0.00 2.71
2472 4030 2.233305 AGAACGGAGGGAGTACATGT 57.767 50.000 2.69 2.69 0.00 3.21
2473 4031 4.730949 TTTAGAACGGAGGGAGTACATG 57.269 45.455 0.00 0.00 0.00 3.21
2474 4032 5.952347 ATTTTAGAACGGAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
2475 4033 6.189859 TCTATTTTAGAACGGAGGGAGTACA 58.810 40.000 0.00 0.00 0.00 2.90
2476 4034 6.705863 TCTATTTTAGAACGGAGGGAGTAC 57.294 41.667 0.00 0.00 0.00 2.73
2477 4035 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
2478 4036 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
2479 4037 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
2480 4038 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
2481 4039 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
2482 4040 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
2483 4041 7.976734 AGTTGAGTCATCTATTTTAGAACGGAG 59.023 37.037 1.70 0.00 38.50 4.63
2484 4042 7.837863 AGTTGAGTCATCTATTTTAGAACGGA 58.162 34.615 1.70 0.00 38.50 4.69
2485 4043 8.480643 AAGTTGAGTCATCTATTTTAGAACGG 57.519 34.615 4.14 0.00 38.50 4.44
2523 4081 9.778741 TCAAAATAGATGACTCAACTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
2526 4084 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
2527 4085 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
2528 4086 8.836413 TCGTTTCAAAATAGATGACTCAACTTT 58.164 29.630 0.00 0.00 0.00 2.66
2529 4087 8.378172 TCGTTTCAAAATAGATGACTCAACTT 57.622 30.769 0.00 0.00 0.00 2.66
2530 4088 7.962964 TCGTTTCAAAATAGATGACTCAACT 57.037 32.000 0.00 0.00 0.00 3.16
2531 4089 7.746475 CCTTCGTTTCAAAATAGATGACTCAAC 59.254 37.037 0.00 0.00 0.00 3.18
2532 4090 7.659799 TCCTTCGTTTCAAAATAGATGACTCAA 59.340 33.333 0.00 0.00 0.00 3.02
2533 4091 7.158697 TCCTTCGTTTCAAAATAGATGACTCA 58.841 34.615 0.00 0.00 0.00 3.41
2534 4092 7.596749 TCCTTCGTTTCAAAATAGATGACTC 57.403 36.000 0.00 0.00 0.00 3.36
2535 4093 7.661847 ACTTCCTTCGTTTCAAAATAGATGACT 59.338 33.333 0.00 0.00 0.00 3.41
2536 4094 7.807680 ACTTCCTTCGTTTCAAAATAGATGAC 58.192 34.615 0.00 0.00 0.00 3.06
2537 4095 7.979444 ACTTCCTTCGTTTCAAAATAGATGA 57.021 32.000 0.00 0.00 0.00 2.92
2538 4096 8.175716 GGTACTTCCTTCGTTTCAAAATAGATG 58.824 37.037 0.00 0.00 0.00 2.90
2539 4097 7.881232 TGGTACTTCCTTCGTTTCAAAATAGAT 59.119 33.333 0.00 0.00 37.07 1.98
2540 4098 7.218614 TGGTACTTCCTTCGTTTCAAAATAGA 58.781 34.615 0.00 0.00 37.07 1.98
2541 4099 7.429636 TGGTACTTCCTTCGTTTCAAAATAG 57.570 36.000 0.00 0.00 37.07 1.73
2542 4100 7.520937 GCTTGGTACTTCCTTCGTTTCAAAATA 60.521 37.037 0.00 0.00 37.07 1.40
2543 4101 6.702716 TTGGTACTTCCTTCGTTTCAAAAT 57.297 33.333 0.00 0.00 37.07 1.82
2544 4102 5.449451 GCTTGGTACTTCCTTCGTTTCAAAA 60.449 40.000 0.00 0.00 37.07 2.44
2545 4103 4.035909 GCTTGGTACTTCCTTCGTTTCAAA 59.964 41.667 0.00 0.00 37.07 2.69
2546 4104 3.562557 GCTTGGTACTTCCTTCGTTTCAA 59.437 43.478 0.00 0.00 37.07 2.69
2547 4105 3.135994 GCTTGGTACTTCCTTCGTTTCA 58.864 45.455 0.00 0.00 37.07 2.69
2548 4106 3.135994 TGCTTGGTACTTCCTTCGTTTC 58.864 45.455 0.00 0.00 37.07 2.78
2549 4107 3.202829 TGCTTGGTACTTCCTTCGTTT 57.797 42.857 0.00 0.00 37.07 3.60
2550 4108 2.922740 TGCTTGGTACTTCCTTCGTT 57.077 45.000 0.00 0.00 37.07 3.85
2551 4109 2.922740 TTGCTTGGTACTTCCTTCGT 57.077 45.000 0.00 0.00 37.07 3.85
2552 4110 3.119849 CCAATTGCTTGGTACTTCCTTCG 60.120 47.826 0.00 0.00 45.90 3.79
2553 4111 4.440839 CCAATTGCTTGGTACTTCCTTC 57.559 45.455 0.00 0.00 45.90 3.46
2566 4124 4.080582 TGGTACAGTAGCATACCAATTGCT 60.081 41.667 8.45 3.45 46.22 3.91
2567 4125 4.196193 TGGTACAGTAGCATACCAATTGC 58.804 43.478 8.45 0.00 46.22 3.56
2573 4131 6.461110 TCTAGTTTGGTACAGTAGCATACC 57.539 41.667 22.36 10.97 44.47 2.73
2574 4132 6.856938 CGATCTAGTTTGGTACAGTAGCATAC 59.143 42.308 19.87 19.87 42.39 2.39
2575 4133 6.016527 CCGATCTAGTTTGGTACAGTAGCATA 60.017 42.308 13.22 6.08 42.39 3.14
2576 4134 5.221263 CCGATCTAGTTTGGTACAGTAGCAT 60.221 44.000 13.22 1.72 42.39 3.79
2577 4135 4.097437 CCGATCTAGTTTGGTACAGTAGCA 59.903 45.833 8.45 8.45 42.39 3.49
2578 4136 4.499357 CCCGATCTAGTTTGGTACAGTAGC 60.499 50.000 2.56 2.56 42.39 3.58
2579 4137 4.885907 TCCCGATCTAGTTTGGTACAGTAG 59.114 45.833 6.37 0.00 42.39 2.57
2580 4138 4.858850 TCCCGATCTAGTTTGGTACAGTA 58.141 43.478 6.37 0.00 42.39 2.74
2581 4139 3.705051 TCCCGATCTAGTTTGGTACAGT 58.295 45.455 6.37 0.00 42.39 3.55
2582 4140 4.556898 CGATCCCGATCTAGTTTGGTACAG 60.557 50.000 6.37 0.00 37.63 2.74
2583 4141 3.317149 CGATCCCGATCTAGTTTGGTACA 59.683 47.826 6.37 0.00 38.22 2.90
2584 4142 3.856267 GCGATCCCGATCTAGTTTGGTAC 60.856 52.174 6.37 0.00 38.22 3.34
2585 4143 2.295349 GCGATCCCGATCTAGTTTGGTA 59.705 50.000 6.37 0.00 38.22 3.25
2586 4144 1.068741 GCGATCCCGATCTAGTTTGGT 59.931 52.381 6.37 0.00 38.22 3.67
2587 4145 1.784525 GCGATCCCGATCTAGTTTGG 58.215 55.000 3.35 0.43 38.22 3.28
2588 4146 1.409412 CGCGATCCCGATCTAGTTTG 58.591 55.000 0.00 0.00 38.22 2.93
2589 4147 0.318784 GCGCGATCCCGATCTAGTTT 60.319 55.000 12.10 0.00 38.22 2.66
2590 4148 1.286260 GCGCGATCCCGATCTAGTT 59.714 57.895 12.10 0.00 38.22 2.24
2591 4149 2.627737 GGCGCGATCCCGATCTAGT 61.628 63.158 12.10 0.00 38.22 2.57
2592 4150 1.867919 AAGGCGCGATCCCGATCTAG 61.868 60.000 12.10 0.00 38.22 2.43
2593 4151 1.901948 AAGGCGCGATCCCGATCTA 60.902 57.895 12.10 0.00 38.22 1.98
2594 4152 3.227276 AAGGCGCGATCCCGATCT 61.227 61.111 12.10 0.00 38.22 2.75
2595 4153 3.038417 CAAGGCGCGATCCCGATC 61.038 66.667 12.10 0.00 38.22 3.69
2596 4154 4.609018 CCAAGGCGCGATCCCGAT 62.609 66.667 12.10 0.00 38.22 4.18
2617 4175 1.705997 ATATTGGGACCGGCACCCTC 61.706 60.000 29.42 9.38 46.82 4.30
2618 4176 1.696314 ATATTGGGACCGGCACCCT 60.696 57.895 29.42 17.61 46.82 4.34
2619 4177 1.228154 GATATTGGGACCGGCACCC 60.228 63.158 25.07 25.07 46.87 4.61
2620 4178 1.228154 GGATATTGGGACCGGCACC 60.228 63.158 0.00 4.30 0.00 5.01
2621 4179 4.475527 GGATATTGGGACCGGCAC 57.524 61.111 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.