Multiple sequence alignment - TraesCS6B01G115600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G115600 chr6B 100.000 4187 0 0 1 4187 100955159 100950973 0.000000e+00 7733.0
1 TraesCS6B01G115600 chr6B 87.234 517 57 5 2210 2719 100551247 100550733 7.800000e-162 580.0
2 TraesCS6B01G115600 chr6B 96.774 217 7 0 3969 4185 513640149 513640365 3.080000e-96 363.0
3 TraesCS6B01G115600 chr6B 80.750 400 41 19 3496 3891 100548470 100548103 3.190000e-71 279.0
4 TraesCS6B01G115600 chrUn 95.036 3646 133 31 112 3724 69320401 69316771 0.000000e+00 5686.0
5 TraesCS6B01G115600 chrUn 93.416 243 14 1 3727 3969 69283891 69283651 3.980000e-95 359.0
6 TraesCS6B01G115600 chrUn 87.660 235 27 2 2210 2443 70408207 70408440 5.330000e-69 272.0
7 TraesCS6B01G115600 chrUn 85.185 162 23 1 2471 2632 70408438 70408598 9.310000e-37 165.0
8 TraesCS6B01G115600 chrUn 98.000 50 1 0 1 50 69320484 69320435 2.070000e-13 87.9
9 TraesCS6B01G115600 chr6A 97.130 3171 80 4 802 3969 55279529 55282691 0.000000e+00 5341.0
10 TraesCS6B01G115600 chr6D 81.962 1896 226 65 896 2761 492853 491044 0.000000e+00 1500.0
11 TraesCS6B01G115600 chr6D 83.158 190 18 10 154 335 496479 496296 1.200000e-35 161.0
12 TraesCS6B01G115600 chr7B 78.504 1898 284 65 854 2716 745403761 745401953 0.000000e+00 1131.0
13 TraesCS6B01G115600 chr7B 96.804 219 7 0 3969 4187 458096863 458097081 2.380000e-97 366.0
14 TraesCS6B01G115600 chr2D 76.638 1969 325 88 806 2716 5688508 5690399 0.000000e+00 963.0
15 TraesCS6B01G115600 chr2A 77.824 1443 245 40 1298 2716 4180564 4181955 0.000000e+00 822.0
16 TraesCS6B01G115600 chr4B 98.174 219 4 0 3969 4187 642683013 642683231 2.360000e-102 383.0
17 TraesCS6B01G115600 chr5B 96.804 219 7 0 3969 4187 455365362 455365144 2.380000e-97 366.0
18 TraesCS6B01G115600 chr5B 95.506 178 8 0 3966 4143 325084258 325084435 6.850000e-73 285.0
19 TraesCS6B01G115600 chr5B 96.296 54 2 0 4134 4187 325084832 325084885 5.770000e-14 89.8
20 TraesCS6B01G115600 chr3B 96.347 219 8 0 3969 4187 603634649 603634431 1.110000e-95 361.0
21 TraesCS6B01G115600 chr7A 94.977 219 11 0 3969 4187 220537172 220537390 1.110000e-90 344.0
22 TraesCS6B01G115600 chr5D 90.972 144 13 0 3969 4112 409717467 409717324 1.190000e-45 195.0
23 TraesCS6B01G115600 chr1A 88.820 161 15 3 3953 4112 8169623 8169465 1.190000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G115600 chr6B 100950973 100955159 4186 True 7733.00 7733 100.000 1 4187 1 chr6B.!!$R1 4186
1 TraesCS6B01G115600 chr6B 100548103 100551247 3144 True 429.50 580 83.992 2210 3891 2 chr6B.!!$R2 1681
2 TraesCS6B01G115600 chrUn 69316771 69320484 3713 True 2886.95 5686 96.518 1 3724 2 chrUn.!!$R2 3723
3 TraesCS6B01G115600 chr6A 55279529 55282691 3162 False 5341.00 5341 97.130 802 3969 1 chr6A.!!$F1 3167
4 TraesCS6B01G115600 chr6D 491044 496479 5435 True 830.50 1500 82.560 154 2761 2 chr6D.!!$R1 2607
5 TraesCS6B01G115600 chr7B 745401953 745403761 1808 True 1131.00 1131 78.504 854 2716 1 chr7B.!!$R1 1862
6 TraesCS6B01G115600 chr2D 5688508 5690399 1891 False 963.00 963 76.638 806 2716 1 chr2D.!!$F1 1910
7 TraesCS6B01G115600 chr2A 4180564 4181955 1391 False 822.00 822 77.824 1298 2716 1 chr2A.!!$F1 1418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 3803 2.159085 ACTAGGATTGCCAAGAGTACGC 60.159 50.000 0.00 0.0 36.29 4.42 F
1545 4361 1.456287 GGCACTCAAGTTGGGGAGT 59.544 57.895 7.84 0.0 44.84 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 4798 0.880278 ACGCTGTTGTGTACTGCTGG 60.880 55.0 0.00 0.0 46.2 4.85 R
3353 7884 0.108377 AGTGTGAATGCGCCGTGATA 60.108 50.0 4.18 0.0 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.205270 TGTTTCGAAAATAGGGGTTACAGAAC 59.795 38.462 13.10 0.00 34.56 3.01
49 50 2.484770 GGGTTACAGAACACTGCACAGA 60.485 50.000 4.31 0.00 35.94 3.41
50 51 3.202906 GGTTACAGAACACTGCACAGAA 58.797 45.455 4.31 0.00 37.29 3.02
52 53 4.095782 GGTTACAGAACACTGCACAGAAAA 59.904 41.667 4.31 0.00 37.29 2.29
54 55 6.017440 GGTTACAGAACACTGCACAGAAAATA 60.017 38.462 4.31 0.00 37.29 1.40
55 56 7.414436 GTTACAGAACACTGCACAGAAAATAA 58.586 34.615 4.31 0.00 35.48 1.40
56 57 6.449635 ACAGAACACTGCACAGAAAATAAA 57.550 33.333 4.31 0.00 35.31 1.40
57 58 6.498304 ACAGAACACTGCACAGAAAATAAAG 58.502 36.000 4.31 0.00 35.31 1.85
58 59 6.318648 ACAGAACACTGCACAGAAAATAAAGA 59.681 34.615 4.31 0.00 35.31 2.52
59 60 6.634436 CAGAACACTGCACAGAAAATAAAGAC 59.366 38.462 4.31 0.00 0.00 3.01
60 61 5.438761 ACACTGCACAGAAAATAAAGACC 57.561 39.130 4.31 0.00 0.00 3.85
62 63 5.536161 ACACTGCACAGAAAATAAAGACCAT 59.464 36.000 4.31 0.00 0.00 3.55
63 64 5.860182 CACTGCACAGAAAATAAAGACCATG 59.140 40.000 4.31 0.00 0.00 3.66
64 65 4.808558 TGCACAGAAAATAAAGACCATGC 58.191 39.130 0.00 0.00 0.00 4.06
65 66 3.853671 GCACAGAAAATAAAGACCATGCG 59.146 43.478 0.00 0.00 0.00 4.73
66 67 4.615912 GCACAGAAAATAAAGACCATGCGT 60.616 41.667 0.00 0.00 0.00 5.24
69 70 6.742718 CACAGAAAATAAAGACCATGCGTAAG 59.257 38.462 0.00 0.00 43.44 2.34
70 71 6.430000 ACAGAAAATAAAGACCATGCGTAAGT 59.570 34.615 0.00 0.00 41.68 2.24
71 72 7.604927 ACAGAAAATAAAGACCATGCGTAAGTA 59.395 33.333 0.00 0.00 41.68 2.24
72 73 7.903431 CAGAAAATAAAGACCATGCGTAAGTAC 59.097 37.037 0.00 0.00 41.68 2.73
73 74 7.822822 AGAAAATAAAGACCATGCGTAAGTACT 59.177 33.333 0.00 0.00 41.68 2.73
74 75 7.916914 AAATAAAGACCATGCGTAAGTACTT 57.083 32.000 13.68 13.68 41.68 2.24
75 76 7.916914 AATAAAGACCATGCGTAAGTACTTT 57.083 32.000 14.49 0.00 41.68 2.66
76 77 7.916914 ATAAAGACCATGCGTAAGTACTTTT 57.083 32.000 14.49 0.00 41.68 2.27
77 78 5.857822 AAGACCATGCGTAAGTACTTTTC 57.142 39.130 14.49 6.90 41.68 2.29
79 80 4.929808 AGACCATGCGTAAGTACTTTTCTG 59.070 41.667 14.49 5.12 41.68 3.02
80 81 4.890088 ACCATGCGTAAGTACTTTTCTGA 58.110 39.130 14.49 0.00 41.68 3.27
81 82 5.302360 ACCATGCGTAAGTACTTTTCTGAA 58.698 37.500 14.49 0.00 41.68 3.02
82 83 5.761234 ACCATGCGTAAGTACTTTTCTGAAA 59.239 36.000 14.49 0.00 41.68 2.69
83 84 6.261381 ACCATGCGTAAGTACTTTTCTGAAAA 59.739 34.615 14.49 14.31 41.68 2.29
84 85 6.577427 CCATGCGTAAGTACTTTTCTGAAAAC 59.423 38.462 14.49 2.13 41.68 2.43
85 86 6.913873 TGCGTAAGTACTTTTCTGAAAACT 57.086 33.333 14.49 5.88 41.68 2.66
86 87 7.311364 TGCGTAAGTACTTTTCTGAAAACTT 57.689 32.000 14.49 17.77 41.68 2.66
87 88 7.184106 TGCGTAAGTACTTTTCTGAAAACTTG 58.816 34.615 20.73 11.80 41.68 3.16
88 89 7.148373 TGCGTAAGTACTTTTCTGAAAACTTGT 60.148 33.333 20.73 15.65 41.68 3.16
89 90 7.695201 GCGTAAGTACTTTTCTGAAAACTTGTT 59.305 33.333 20.73 11.95 41.68 2.83
90 91 9.550811 CGTAAGTACTTTTCTGAAAACTTGTTT 57.449 29.630 20.73 10.28 31.60 2.83
324 2589 9.159364 GCACATGTATATAATGATGACACAGAT 57.841 33.333 0.00 0.00 0.00 2.90
378 2643 3.977427 TGATCATACGATAGGCACACAC 58.023 45.455 0.00 0.00 43.77 3.82
433 2704 3.495001 GCTCAATACGGAATTACTGGAGC 59.505 47.826 0.00 0.00 34.59 4.70
542 2827 6.346919 GCATCACGTAATTAGAGGCTATGTTG 60.347 42.308 2.64 0.00 36.28 3.33
683 3464 2.417719 ACAGCTCCTAAAAAGACTGCG 58.582 47.619 0.00 0.00 0.00 5.18
919 3719 9.592196 AACATACCCTGATTGCATCTAATTATT 57.408 29.630 0.00 0.00 0.00 1.40
989 3803 2.159085 ACTAGGATTGCCAAGAGTACGC 60.159 50.000 0.00 0.00 36.29 4.42
1020 3834 3.243975 CCATGGCAGAAGCTTCAAAGTTT 60.244 43.478 27.57 3.39 41.70 2.66
1238 4052 3.629142 GGTTGCTACCACTTCCACTAT 57.371 47.619 12.79 0.00 44.36 2.12
1545 4361 1.456287 GGCACTCAAGTTGGGGAGT 59.544 57.895 7.84 0.00 44.84 3.85
1921 4747 2.158534 TCCATAGTGGTTGCCTTTGTGT 60.159 45.455 0.00 0.00 39.03 3.72
1933 4759 2.870411 GCCTTTGTGTTCTACGTCAAGT 59.130 45.455 0.00 0.00 0.00 3.16
1969 4798 1.305219 TGCCTATGCCGAGCAAACAC 61.305 55.000 2.68 0.00 43.62 3.32
1978 4807 0.512952 CGAGCAAACACCAGCAGTAC 59.487 55.000 0.00 0.00 0.00 2.73
2006 4835 3.750130 AGCGTCGAGTACAGAAGAAGTAA 59.250 43.478 0.00 0.00 0.00 2.24
2015 4844 7.595502 CGAGTACAGAAGAAGTAAAGTTGATGT 59.404 37.037 0.00 0.00 0.00 3.06
2196 5049 1.672356 CCAACCAGAGACCAAGCCG 60.672 63.158 0.00 0.00 0.00 5.52
2547 5412 1.375523 GGCGAAGTCGGTGATGGTT 60.376 57.895 2.47 0.00 40.23 3.67
2769 5656 2.224159 GGGTGCCTCCTCCAACAGA 61.224 63.158 0.00 0.00 36.25 3.41
2836 5723 4.279420 AGGAGAATTTTCTTGAGTGGTTGC 59.721 41.667 0.00 0.00 37.73 4.17
2967 7014 2.526545 GATGCTCGTCTATGCAGCC 58.473 57.895 0.00 0.00 42.74 4.85
3127 7631 3.462021 GCAGGACATCTTTTCGAGCTAT 58.538 45.455 0.00 0.00 0.00 2.97
3236 7740 1.418637 TGTGGTGGGTAAACTCAGTCC 59.581 52.381 0.00 0.00 0.00 3.85
3269 7799 9.142515 TCTGATATTTGTTCATCAATTTTGCAC 57.857 29.630 0.00 0.00 35.84 4.57
3353 7884 7.490079 GCATGTATGATTGATTTGTGTGTTGAT 59.510 33.333 0.00 0.00 0.00 2.57
3458 7989 0.674895 ATTTCAGCACAGACTCCGGC 60.675 55.000 0.00 0.00 0.00 6.13
3569 8100 0.828677 AATGCCCTGTACTACGGTCC 59.171 55.000 0.00 0.00 0.00 4.46
3575 8106 1.372582 CTGTACTACGGTCCGCAGTA 58.627 55.000 18.61 18.61 35.06 2.74
3576 8107 1.739466 CTGTACTACGGTCCGCAGTAA 59.261 52.381 23.05 13.61 37.45 2.24
3577 8108 2.357009 CTGTACTACGGTCCGCAGTAAT 59.643 50.000 23.05 2.42 37.45 1.89
3659 8191 1.760875 GGGGAGGTGGTGCTCGATA 60.761 63.158 0.00 0.00 0.00 2.92
3660 8192 1.742768 GGGAGGTGGTGCTCGATAG 59.257 63.158 0.00 0.00 0.00 2.08
3718 8250 9.674824 CTTCCTTGTATGATCTTTAATTCATGC 57.325 33.333 0.00 5.86 36.06 4.06
3775 8307 2.083774 CTTGTATTGTGCCCGTGATGT 58.916 47.619 0.00 0.00 0.00 3.06
3974 8509 7.727331 GCTTCATGCTTTAATCTGACTAGAT 57.273 36.000 0.00 0.00 41.02 1.98
3975 8510 7.574496 GCTTCATGCTTTAATCTGACTAGATG 58.426 38.462 0.00 0.00 40.02 2.90
3976 8511 7.440556 GCTTCATGCTTTAATCTGACTAGATGA 59.559 37.037 0.00 0.00 40.02 2.92
3977 8512 8.654230 TTCATGCTTTAATCTGACTAGATGAC 57.346 34.615 0.00 0.00 42.80 3.06
3978 8513 7.212976 TCATGCTTTAATCTGACTAGATGACC 58.787 38.462 0.00 0.00 42.80 4.02
3979 8514 5.918608 TGCTTTAATCTGACTAGATGACCC 58.081 41.667 0.00 0.00 42.80 4.46
3980 8515 4.985409 GCTTTAATCTGACTAGATGACCCG 59.015 45.833 0.00 0.00 42.80 5.28
3981 8516 5.452077 GCTTTAATCTGACTAGATGACCCGT 60.452 44.000 0.00 0.00 42.80 5.28
3982 8517 6.540438 TTTAATCTGACTAGATGACCCGTT 57.460 37.500 0.00 0.00 42.80 4.44
3983 8518 4.392921 AATCTGACTAGATGACCCGTTG 57.607 45.455 0.00 0.00 42.80 4.10
3984 8519 1.476891 TCTGACTAGATGACCCGTTGC 59.523 52.381 0.00 0.00 0.00 4.17
3985 8520 0.172578 TGACTAGATGACCCGTTGCG 59.827 55.000 0.00 0.00 0.00 4.85
3986 8521 0.172803 GACTAGATGACCCGTTGCGT 59.827 55.000 0.00 0.00 0.00 5.24
3987 8522 0.172803 ACTAGATGACCCGTTGCGTC 59.827 55.000 0.00 0.00 0.00 5.19
3988 8523 0.172578 CTAGATGACCCGTTGCGTCA 59.827 55.000 0.00 0.00 44.00 4.35
3989 8524 0.604073 TAGATGACCCGTTGCGTCAA 59.396 50.000 0.00 0.00 43.16 3.18
3990 8525 0.036388 AGATGACCCGTTGCGTCAAT 60.036 50.000 0.00 0.00 43.16 2.57
3991 8526 0.096976 GATGACCCGTTGCGTCAATG 59.903 55.000 0.00 5.22 43.16 2.82
3992 8527 0.321210 ATGACCCGTTGCGTCAATGA 60.321 50.000 11.71 0.00 43.16 2.57
3993 8528 1.225376 TGACCCGTTGCGTCAATGAC 61.225 55.000 2.75 2.75 37.31 3.06
4002 8537 4.868195 GTCAATGACGCAAAGGCC 57.132 55.556 0.00 0.00 36.38 5.19
4003 8538 1.956043 GTCAATGACGCAAAGGCCA 59.044 52.632 5.01 0.00 36.38 5.36
4004 8539 0.527565 GTCAATGACGCAAAGGCCAT 59.472 50.000 5.01 0.00 36.38 4.40
4005 8540 0.527113 TCAATGACGCAAAGGCCATG 59.473 50.000 5.01 4.56 36.38 3.66
4006 8541 0.244450 CAATGACGCAAAGGCCATGT 59.756 50.000 5.01 0.00 36.38 3.21
4007 8542 0.244450 AATGACGCAAAGGCCATGTG 59.756 50.000 17.62 17.62 36.38 3.21
4008 8543 0.895100 ATGACGCAAAGGCCATGTGT 60.895 50.000 22.98 22.98 43.72 3.72
4009 8544 0.250510 TGACGCAAAGGCCATGTGTA 60.251 50.000 22.87 11.81 41.30 2.90
4010 8545 0.878416 GACGCAAAGGCCATGTGTAA 59.122 50.000 22.87 0.00 41.30 2.41
4011 8546 0.881118 ACGCAAAGGCCATGTGTAAG 59.119 50.000 21.89 8.01 39.58 2.34
4012 8547 0.881118 CGCAAAGGCCATGTGTAAGT 59.119 50.000 5.01 0.00 36.38 2.24
4013 8548 1.269448 CGCAAAGGCCATGTGTAAGTT 59.731 47.619 5.01 0.00 36.38 2.66
4014 8549 2.486203 CGCAAAGGCCATGTGTAAGTTA 59.514 45.455 5.01 0.00 36.38 2.24
4015 8550 3.669557 CGCAAAGGCCATGTGTAAGTTAC 60.670 47.826 5.01 6.06 36.38 2.50
4016 8551 3.506067 GCAAAGGCCATGTGTAAGTTACT 59.494 43.478 14.00 0.00 0.00 2.24
4017 8552 4.022329 GCAAAGGCCATGTGTAAGTTACTT 60.022 41.667 14.00 2.32 0.00 2.24
4018 8553 5.182380 GCAAAGGCCATGTGTAAGTTACTTA 59.818 40.000 14.00 0.03 0.00 2.24
4019 8554 6.127730 GCAAAGGCCATGTGTAAGTTACTTAT 60.128 38.462 14.00 5.83 0.00 1.73
4020 8555 7.576856 GCAAAGGCCATGTGTAAGTTACTTATT 60.577 37.037 14.00 0.00 0.00 1.40
4021 8556 7.391148 AAGGCCATGTGTAAGTTACTTATTG 57.609 36.000 14.00 4.71 0.00 1.90
4022 8557 6.481643 AGGCCATGTGTAAGTTACTTATTGT 58.518 36.000 14.00 0.00 0.00 2.71
4023 8558 6.374333 AGGCCATGTGTAAGTTACTTATTGTG 59.626 38.462 14.00 5.69 0.00 3.33
4024 8559 6.373216 GGCCATGTGTAAGTTACTTATTGTGA 59.627 38.462 14.00 0.00 0.00 3.58
4025 8560 7.414098 GGCCATGTGTAAGTTACTTATTGTGAG 60.414 40.741 14.00 0.00 0.00 3.51
4026 8561 7.333423 GCCATGTGTAAGTTACTTATTGTGAGA 59.667 37.037 14.00 0.00 0.00 3.27
4027 8562 8.873830 CCATGTGTAAGTTACTTATTGTGAGAG 58.126 37.037 14.00 0.00 0.00 3.20
4028 8563 9.639601 CATGTGTAAGTTACTTATTGTGAGAGA 57.360 33.333 14.00 0.00 0.00 3.10
4032 8567 9.151471 TGTAAGTTACTTATTGTGAGAGAATGC 57.849 33.333 14.00 0.00 0.00 3.56
4033 8568 9.151471 GTAAGTTACTTATTGTGAGAGAATGCA 57.849 33.333 8.14 0.00 0.00 3.96
4034 8569 8.798859 AAGTTACTTATTGTGAGAGAATGCAT 57.201 30.769 0.00 0.00 0.00 3.96
4035 8570 8.798859 AGTTACTTATTGTGAGAGAATGCATT 57.201 30.769 12.83 12.83 0.00 3.56
4036 8571 9.890629 AGTTACTTATTGTGAGAGAATGCATTA 57.109 29.630 12.97 0.00 0.00 1.90
4080 8615 9.650539 AAAGAATAGCTCATGTACTATATGCAG 57.349 33.333 9.62 0.00 0.00 4.41
4081 8616 8.359875 AGAATAGCTCATGTACTATATGCAGT 57.640 34.615 9.62 0.00 0.00 4.40
4082 8617 8.249638 AGAATAGCTCATGTACTATATGCAGTG 58.750 37.037 9.62 0.00 0.00 3.66
4083 8618 7.709149 ATAGCTCATGTACTATATGCAGTGA 57.291 36.000 8.03 0.00 0.00 3.41
4084 8619 6.023357 AGCTCATGTACTATATGCAGTGAG 57.977 41.667 0.00 0.00 34.62 3.51
4085 8620 4.624882 GCTCATGTACTATATGCAGTGAGC 59.375 45.833 8.07 8.07 41.86 4.26
4097 8632 3.687572 GCAGTGAGCACATAAGATTGG 57.312 47.619 3.19 0.00 44.79 3.16
4098 8633 3.273434 GCAGTGAGCACATAAGATTGGA 58.727 45.455 3.19 0.00 44.79 3.53
4099 8634 3.691118 GCAGTGAGCACATAAGATTGGAA 59.309 43.478 3.19 0.00 44.79 3.53
4100 8635 4.156556 GCAGTGAGCACATAAGATTGGAAA 59.843 41.667 3.19 0.00 44.79 3.13
4101 8636 5.634896 CAGTGAGCACATAAGATTGGAAAC 58.365 41.667 3.19 0.00 0.00 2.78
4102 8637 4.393062 AGTGAGCACATAAGATTGGAAACG 59.607 41.667 3.19 0.00 0.00 3.60
4103 8638 4.391830 GTGAGCACATAAGATTGGAAACGA 59.608 41.667 0.00 0.00 0.00 3.85
4104 8639 5.065218 GTGAGCACATAAGATTGGAAACGAT 59.935 40.000 0.00 0.00 37.06 3.73
4105 8640 5.065090 TGAGCACATAAGATTGGAAACGATG 59.935 40.000 0.00 0.00 33.38 3.84
4106 8641 4.037690 GCACATAAGATTGGAAACGATGC 58.962 43.478 0.00 0.00 33.38 3.91
4107 8642 4.438608 GCACATAAGATTGGAAACGATGCA 60.439 41.667 0.00 0.00 33.38 3.96
4108 8643 5.030295 CACATAAGATTGGAAACGATGCAC 58.970 41.667 0.00 0.00 33.38 4.57
4109 8644 4.699735 ACATAAGATTGGAAACGATGCACA 59.300 37.500 0.00 0.00 33.38 4.57
4110 8645 5.182950 ACATAAGATTGGAAACGATGCACAA 59.817 36.000 0.00 0.00 33.38 3.33
4111 8646 4.582701 AAGATTGGAAACGATGCACAAA 57.417 36.364 0.00 0.00 33.38 2.83
4112 8647 4.582701 AGATTGGAAACGATGCACAAAA 57.417 36.364 0.00 0.00 33.38 2.44
4113 8648 4.549458 AGATTGGAAACGATGCACAAAAG 58.451 39.130 0.00 0.00 33.38 2.27
4114 8649 4.278170 AGATTGGAAACGATGCACAAAAGA 59.722 37.500 0.00 0.00 33.38 2.52
4115 8650 4.377839 TTGGAAACGATGCACAAAAGAA 57.622 36.364 0.00 0.00 0.00 2.52
4116 8651 4.582701 TGGAAACGATGCACAAAAGAAT 57.417 36.364 0.00 0.00 0.00 2.40
4117 8652 5.697473 TGGAAACGATGCACAAAAGAATA 57.303 34.783 0.00 0.00 0.00 1.75
4118 8653 5.698832 TGGAAACGATGCACAAAAGAATAG 58.301 37.500 0.00 0.00 0.00 1.73
4119 8654 4.558860 GGAAACGATGCACAAAAGAATAGC 59.441 41.667 0.00 0.00 0.00 2.97
4120 8655 5.376854 AAACGATGCACAAAAGAATAGCT 57.623 34.783 0.00 0.00 0.00 3.32
4121 8656 5.376854 AACGATGCACAAAAGAATAGCTT 57.623 34.783 0.00 0.00 38.88 3.74
4122 8657 6.494893 AACGATGCACAAAAGAATAGCTTA 57.505 33.333 0.00 0.00 35.24 3.09
4123 8658 6.683974 ACGATGCACAAAAGAATAGCTTAT 57.316 33.333 0.00 0.00 35.24 1.73
4124 8659 7.786178 ACGATGCACAAAAGAATAGCTTATA 57.214 32.000 0.00 0.00 35.24 0.98
4125 8660 8.383318 ACGATGCACAAAAGAATAGCTTATAT 57.617 30.769 0.00 0.00 35.24 0.86
4126 8661 9.489084 ACGATGCACAAAAGAATAGCTTATATA 57.511 29.630 0.00 0.00 35.24 0.86
4127 8662 9.746711 CGATGCACAAAAGAATAGCTTATATAC 57.253 33.333 0.00 0.00 35.24 1.47
4156 8691 6.396459 GCGGTGAGCTCATATACTATTTTC 57.604 41.667 21.47 1.60 44.04 2.29
4157 8692 5.926542 GCGGTGAGCTCATATACTATTTTCA 59.073 40.000 21.47 0.00 44.04 2.69
4158 8693 6.128795 GCGGTGAGCTCATATACTATTTTCAC 60.129 42.308 21.47 1.86 44.04 3.18
4159 8694 6.366332 CGGTGAGCTCATATACTATTTTCACC 59.634 42.308 21.47 10.61 45.26 4.02
4160 8695 7.217200 GGTGAGCTCATATACTATTTTCACCA 58.783 38.462 21.47 0.00 46.95 4.17
4161 8696 7.880195 GGTGAGCTCATATACTATTTTCACCAT 59.120 37.037 21.47 0.00 46.95 3.55
4162 8697 9.929180 GTGAGCTCATATACTATTTTCACCATA 57.071 33.333 21.47 0.00 0.00 2.74
4170 8705 7.736447 ATACTATTTTCACCATAGAAGCAGC 57.264 36.000 0.00 0.00 0.00 5.25
4171 8706 5.500234 ACTATTTTCACCATAGAAGCAGCA 58.500 37.500 0.00 0.00 0.00 4.41
4172 8707 5.945784 ACTATTTTCACCATAGAAGCAGCAA 59.054 36.000 0.00 0.00 0.00 3.91
4173 8708 4.771590 TTTTCACCATAGAAGCAGCAAG 57.228 40.909 0.00 0.00 0.00 4.01
4174 8709 2.408271 TCACCATAGAAGCAGCAAGG 57.592 50.000 0.00 0.00 0.00 3.61
4175 8710 1.065199 TCACCATAGAAGCAGCAAGGG 60.065 52.381 0.00 0.00 0.00 3.95
4176 8711 1.065199 CACCATAGAAGCAGCAAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
4177 8712 1.635487 ACCATAGAAGCAGCAAGGGAA 59.365 47.619 0.00 0.00 0.00 3.97
4178 8713 2.295885 CCATAGAAGCAGCAAGGGAAG 58.704 52.381 0.00 0.00 0.00 3.46
4179 8714 2.092753 CCATAGAAGCAGCAAGGGAAGA 60.093 50.000 0.00 0.00 0.00 2.87
4180 8715 2.770164 TAGAAGCAGCAAGGGAAGAC 57.230 50.000 0.00 0.00 0.00 3.01
4181 8716 1.063183 AGAAGCAGCAAGGGAAGACT 58.937 50.000 0.00 0.00 0.00 3.24
4182 8717 2.260822 AGAAGCAGCAAGGGAAGACTA 58.739 47.619 0.00 0.00 0.00 2.59
4183 8718 2.639839 AGAAGCAGCAAGGGAAGACTAA 59.360 45.455 0.00 0.00 0.00 2.24
4184 8719 3.073062 AGAAGCAGCAAGGGAAGACTAAA 59.927 43.478 0.00 0.00 0.00 1.85
4185 8720 3.064900 AGCAGCAAGGGAAGACTAAAG 57.935 47.619 0.00 0.00 0.00 1.85
4186 8721 2.373502 AGCAGCAAGGGAAGACTAAAGT 59.626 45.455 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.437289 TGGTCTTTATTTTCTGTGCAGTG 57.563 39.130 0.00 0.00 0.00 3.66
49 50 7.916914 AGTACTTACGCATGGTCTTTATTTT 57.083 32.000 0.00 0.00 0.00 1.82
50 51 7.916914 AAGTACTTACGCATGGTCTTTATTT 57.083 32.000 6.26 0.00 0.00 1.40
52 53 7.822822 AGAAAAGTACTTACGCATGGTCTTTAT 59.177 33.333 8.92 0.00 0.00 1.40
54 55 5.995897 AGAAAAGTACTTACGCATGGTCTTT 59.004 36.000 8.92 0.00 0.00 2.52
55 56 5.408604 CAGAAAAGTACTTACGCATGGTCTT 59.591 40.000 8.92 0.00 0.00 3.01
56 57 4.929808 CAGAAAAGTACTTACGCATGGTCT 59.070 41.667 8.92 0.00 0.00 3.85
57 58 4.927425 TCAGAAAAGTACTTACGCATGGTC 59.073 41.667 8.92 0.00 0.00 4.02
58 59 4.890088 TCAGAAAAGTACTTACGCATGGT 58.110 39.130 8.92 0.00 0.00 3.55
59 60 5.856126 TTCAGAAAAGTACTTACGCATGG 57.144 39.130 8.92 0.00 0.00 3.66
60 61 7.352739 AGTTTTCAGAAAAGTACTTACGCATG 58.647 34.615 13.46 4.46 32.47 4.06
62 63 6.913873 AGTTTTCAGAAAAGTACTTACGCA 57.086 33.333 13.46 0.00 32.47 5.24
63 64 7.184779 ACAAGTTTTCAGAAAAGTACTTACGC 58.815 34.615 15.10 1.46 33.06 4.42
64 65 9.550811 AAACAAGTTTTCAGAAAAGTACTTACG 57.449 29.630 15.10 5.83 33.06 3.18
71 72 9.487790 TCAAATGAAACAAGTTTTCAGAAAAGT 57.512 25.926 8.67 9.29 41.13 2.66
74 75 8.934825 CCTTCAAATGAAACAAGTTTTCAGAAA 58.065 29.630 5.72 0.00 41.13 2.52
75 76 7.064490 GCCTTCAAATGAAACAAGTTTTCAGAA 59.936 33.333 5.72 3.65 41.13 3.02
76 77 6.534793 GCCTTCAAATGAAACAAGTTTTCAGA 59.465 34.615 5.72 0.00 41.13 3.27
77 78 6.536224 AGCCTTCAAATGAAACAAGTTTTCAG 59.464 34.615 5.72 0.00 41.13 3.02
79 80 6.908870 AGCCTTCAAATGAAACAAGTTTTC 57.091 33.333 0.00 0.00 33.07 2.29
80 81 8.040727 AGTAAGCCTTCAAATGAAACAAGTTTT 58.959 29.630 0.00 0.00 33.07 2.43
81 82 7.555965 AGTAAGCCTTCAAATGAAACAAGTTT 58.444 30.769 0.00 0.00 33.07 2.66
82 83 7.112452 AGTAAGCCTTCAAATGAAACAAGTT 57.888 32.000 0.00 0.00 33.07 2.66
83 84 6.715347 AGTAAGCCTTCAAATGAAACAAGT 57.285 33.333 0.00 0.00 33.07 3.16
84 85 8.330302 CAAAAGTAAGCCTTCAAATGAAACAAG 58.670 33.333 0.00 0.00 33.07 3.16
85 86 7.821846 ACAAAAGTAAGCCTTCAAATGAAACAA 59.178 29.630 0.00 0.00 33.07 2.83
86 87 7.327214 ACAAAAGTAAGCCTTCAAATGAAACA 58.673 30.769 0.00 0.00 33.07 2.83
87 88 7.770801 ACAAAAGTAAGCCTTCAAATGAAAC 57.229 32.000 0.00 0.00 33.07 2.78
88 89 9.528018 CTAACAAAAGTAAGCCTTCAAATGAAA 57.472 29.630 0.00 0.00 33.07 2.69
89 90 8.691797 ACTAACAAAAGTAAGCCTTCAAATGAA 58.308 29.630 0.00 0.00 31.27 2.57
90 91 8.232913 ACTAACAAAAGTAAGCCTTCAAATGA 57.767 30.769 0.00 0.00 31.27 2.57
91 92 8.871686 AACTAACAAAAGTAAGCCTTCAAATG 57.128 30.769 0.00 0.00 31.27 2.32
324 2589 7.581814 TGAATGTTATAGGTGGGATGATTTCA 58.418 34.615 0.00 0.00 0.00 2.69
378 2643 0.451783 GCACCGCCTTTAACTGGATG 59.548 55.000 0.00 0.00 0.00 3.51
414 2685 5.527214 TGAATGCTCCAGTAATTCCGTATTG 59.473 40.000 0.00 0.00 0.00 1.90
433 2704 2.483106 CTGTTGGCTGAGACACTGAATG 59.517 50.000 0.00 0.00 0.00 2.67
542 2827 1.074319 CAGCATGACGTTGCAATGCC 61.074 55.000 18.61 8.40 45.23 4.40
637 2984 8.922931 TTGGACATACATATATGCAGTTGAAT 57.077 30.769 12.79 0.00 41.83 2.57
860 3649 7.589958 AGCTAGCTAGACTAATTAAGCAAGA 57.410 36.000 25.15 0.00 37.44 3.02
919 3719 2.905075 CATGGACATCAGCGGTTTCTA 58.095 47.619 0.00 0.00 0.00 2.10
989 3803 1.938577 CTTCTGCCATGGATCGACTTG 59.061 52.381 18.40 0.00 0.00 3.16
1020 3834 7.875554 TCGCTGAATAGTTGCATAATGGTAATA 59.124 33.333 0.00 0.00 0.00 0.98
1267 4081 1.603739 GAGGGGTTTCACTGGGCAC 60.604 63.158 0.00 0.00 0.00 5.01
1545 4361 0.178891 AACTCCTGAGGCCTTCCTGA 60.179 55.000 6.77 0.39 44.46 3.86
1782 4608 2.095059 CGCCCTCTTGAAATTCAGTTGG 60.095 50.000 0.00 0.11 0.00 3.77
1921 4747 4.038763 ACTCACCATCAACTTGACGTAGAA 59.961 41.667 0.00 0.00 0.00 2.10
1933 4759 3.441101 AGGCACTACTACTCACCATCAA 58.559 45.455 0.00 0.00 36.02 2.57
1969 4798 0.880278 ACGCTGTTGTGTACTGCTGG 60.880 55.000 0.00 0.00 46.20 4.85
1978 4807 1.053048 CTGTACTCGACGCTGTTGTG 58.947 55.000 0.00 0.00 0.00 3.33
2015 4844 8.795513 CAATGAATAATATGTAGGTGATGGCAA 58.204 33.333 0.00 0.00 0.00 4.52
2196 5049 1.613437 CCCATTGAGTTTGACCACCAC 59.387 52.381 0.00 0.00 0.00 4.16
2547 5412 2.997315 AGCCGACCACTGCTGCTA 60.997 61.111 0.00 0.00 35.40 3.49
2769 5656 4.402474 GCTACCATAAAATCCTGCACCTTT 59.598 41.667 0.00 0.00 0.00 3.11
2836 5723 3.072184 CCAGGACCCTCATATTCTGAAGG 59.928 52.174 0.00 0.00 40.78 3.46
3127 7631 4.218635 GCAGTATGGTATGCTAGCAGTAGA 59.781 45.833 23.89 7.62 39.81 2.59
3353 7884 0.108377 AGTGTGAATGCGCCGTGATA 60.108 50.000 4.18 0.00 0.00 2.15
3569 8100 9.128107 CTGGGCATTTATTTATTTATTACTGCG 57.872 33.333 0.00 0.00 0.00 5.18
3659 8191 2.614013 AAACCCCCGCCTGATCCT 60.614 61.111 0.00 0.00 0.00 3.24
3660 8192 2.124278 GAAACCCCCGCCTGATCC 60.124 66.667 0.00 0.00 0.00 3.36
3956 8491 5.451937 CGGGTCATCTAGTCAGATTAAAGCA 60.452 44.000 0.00 0.00 39.62 3.91
3969 8504 2.959275 GACGCAACGGGTCATCTAG 58.041 57.895 6.33 0.00 43.51 2.43
3975 8510 1.495951 GTCATTGACGCAACGGGTC 59.504 57.895 0.13 4.38 44.15 4.46
3976 8511 3.650369 GTCATTGACGCAACGGGT 58.350 55.556 0.13 0.00 0.00 5.28
3985 8520 0.527565 ATGGCCTTTGCGTCATTGAC 59.472 50.000 3.32 6.73 38.85 3.18
3986 8521 0.527113 CATGGCCTTTGCGTCATTGA 59.473 50.000 3.32 0.00 38.85 2.57
3987 8522 0.244450 ACATGGCCTTTGCGTCATTG 59.756 50.000 3.32 0.00 38.85 2.82
3988 8523 0.244450 CACATGGCCTTTGCGTCATT 59.756 50.000 3.32 0.00 38.85 2.57
3989 8524 0.895100 ACACATGGCCTTTGCGTCAT 60.895 50.000 3.32 0.00 38.85 3.06
3990 8525 0.250510 TACACATGGCCTTTGCGTCA 60.251 50.000 3.32 0.00 38.85 4.35
3991 8526 0.878416 TTACACATGGCCTTTGCGTC 59.122 50.000 3.32 0.00 38.85 5.19
3992 8527 0.881118 CTTACACATGGCCTTTGCGT 59.119 50.000 3.32 4.70 38.85 5.24
3993 8528 0.881118 ACTTACACATGGCCTTTGCG 59.119 50.000 3.32 0.00 38.85 4.85
3994 8529 3.506067 AGTAACTTACACATGGCCTTTGC 59.494 43.478 3.32 0.00 0.00 3.68
3995 8530 5.705609 AAGTAACTTACACATGGCCTTTG 57.294 39.130 3.32 4.28 0.00 2.77
3996 8531 7.450323 ACAATAAGTAACTTACACATGGCCTTT 59.550 33.333 3.32 0.00 0.00 3.11
3997 8532 6.946009 ACAATAAGTAACTTACACATGGCCTT 59.054 34.615 3.32 0.00 0.00 4.35
3998 8533 6.374333 CACAATAAGTAACTTACACATGGCCT 59.626 38.462 3.32 0.00 0.00 5.19
3999 8534 6.373216 TCACAATAAGTAACTTACACATGGCC 59.627 38.462 0.00 0.00 0.00 5.36
4000 8535 7.333423 TCTCACAATAAGTAACTTACACATGGC 59.667 37.037 0.00 0.00 0.00 4.40
4001 8536 8.771920 TCTCACAATAAGTAACTTACACATGG 57.228 34.615 0.00 0.00 0.00 3.66
4002 8537 9.639601 TCTCTCACAATAAGTAACTTACACATG 57.360 33.333 1.79 0.00 0.00 3.21
4006 8541 9.151471 GCATTCTCTCACAATAAGTAACTTACA 57.849 33.333 1.79 0.00 0.00 2.41
4007 8542 9.151471 TGCATTCTCTCACAATAAGTAACTTAC 57.849 33.333 0.00 0.00 0.00 2.34
4008 8543 9.890629 ATGCATTCTCTCACAATAAGTAACTTA 57.109 29.630 0.00 0.00 0.00 2.24
4009 8544 8.798859 ATGCATTCTCTCACAATAAGTAACTT 57.201 30.769 0.00 0.00 0.00 2.66
4010 8545 8.798859 AATGCATTCTCTCACAATAAGTAACT 57.201 30.769 5.99 0.00 0.00 2.24
4039 8574 9.578439 GAGCTATTCTTTTCAAGCAACAAATAT 57.422 29.630 0.00 0.00 37.44 1.28
4040 8575 8.575589 TGAGCTATTCTTTTCAAGCAACAAATA 58.424 29.630 0.00 0.00 37.44 1.40
4041 8576 7.436118 TGAGCTATTCTTTTCAAGCAACAAAT 58.564 30.769 0.00 0.00 37.44 2.32
4042 8577 6.804677 TGAGCTATTCTTTTCAAGCAACAAA 58.195 32.000 0.00 0.00 37.44 2.83
4043 8578 6.389830 TGAGCTATTCTTTTCAAGCAACAA 57.610 33.333 0.00 0.00 37.44 2.83
4044 8579 6.016024 ACATGAGCTATTCTTTTCAAGCAACA 60.016 34.615 0.00 0.00 37.44 3.33
4045 8580 6.385033 ACATGAGCTATTCTTTTCAAGCAAC 58.615 36.000 0.00 0.00 37.44 4.17
4046 8581 6.579666 ACATGAGCTATTCTTTTCAAGCAA 57.420 33.333 0.00 0.00 37.44 3.91
4047 8582 6.881065 AGTACATGAGCTATTCTTTTCAAGCA 59.119 34.615 0.00 0.00 37.44 3.91
4048 8583 7.313951 AGTACATGAGCTATTCTTTTCAAGC 57.686 36.000 0.00 0.00 35.16 4.01
4054 8589 9.650539 CTGCATATAGTACATGAGCTATTCTTT 57.349 33.333 15.14 0.40 0.00 2.52
4055 8590 8.811017 ACTGCATATAGTACATGAGCTATTCTT 58.189 33.333 15.14 3.76 0.00 2.52
4056 8591 8.249638 CACTGCATATAGTACATGAGCTATTCT 58.750 37.037 15.14 5.36 0.00 2.40
4057 8592 8.246871 TCACTGCATATAGTACATGAGCTATTC 58.753 37.037 15.14 8.66 0.00 1.75
4058 8593 8.127150 TCACTGCATATAGTACATGAGCTATT 57.873 34.615 15.14 5.36 0.00 1.73
4059 8594 7.630297 GCTCACTGCATATAGTACATGAGCTAT 60.630 40.741 17.44 9.12 38.72 2.97
4060 8595 6.349694 GCTCACTGCATATAGTACATGAGCTA 60.350 42.308 17.44 1.36 38.72 3.32
4061 8596 5.566429 GCTCACTGCATATAGTACATGAGCT 60.566 44.000 17.44 0.00 38.72 4.09
4062 8597 4.624882 GCTCACTGCATATAGTACATGAGC 59.375 45.833 0.00 12.57 42.31 4.26
4077 8612 3.273434 TCCAATCTTATGTGCTCACTGC 58.727 45.455 1.47 0.00 43.25 4.40
4078 8613 5.634896 GTTTCCAATCTTATGTGCTCACTG 58.365 41.667 1.47 0.00 0.00 3.66
4079 8614 4.393062 CGTTTCCAATCTTATGTGCTCACT 59.607 41.667 1.47 0.00 0.00 3.41
4080 8615 4.391830 TCGTTTCCAATCTTATGTGCTCAC 59.608 41.667 0.00 0.00 0.00 3.51
4081 8616 4.574892 TCGTTTCCAATCTTATGTGCTCA 58.425 39.130 0.00 0.00 0.00 4.26
4082 8617 5.505286 CATCGTTTCCAATCTTATGTGCTC 58.495 41.667 0.00 0.00 0.00 4.26
4083 8618 4.201950 GCATCGTTTCCAATCTTATGTGCT 60.202 41.667 0.00 0.00 0.00 4.40
4084 8619 4.037690 GCATCGTTTCCAATCTTATGTGC 58.962 43.478 0.00 0.00 0.00 4.57
4085 8620 5.030295 GTGCATCGTTTCCAATCTTATGTG 58.970 41.667 0.00 0.00 0.00 3.21
4086 8621 4.699735 TGTGCATCGTTTCCAATCTTATGT 59.300 37.500 0.00 0.00 0.00 2.29
4087 8622 5.233957 TGTGCATCGTTTCCAATCTTATG 57.766 39.130 0.00 0.00 0.00 1.90
4088 8623 5.895636 TTGTGCATCGTTTCCAATCTTAT 57.104 34.783 0.00 0.00 0.00 1.73
4089 8624 5.697473 TTTGTGCATCGTTTCCAATCTTA 57.303 34.783 0.00 0.00 0.00 2.10
4090 8625 4.582701 TTTGTGCATCGTTTCCAATCTT 57.417 36.364 0.00 0.00 0.00 2.40
4091 8626 4.278170 TCTTTTGTGCATCGTTTCCAATCT 59.722 37.500 0.00 0.00 0.00 2.40
4092 8627 4.545610 TCTTTTGTGCATCGTTTCCAATC 58.454 39.130 0.00 0.00 0.00 2.67
4093 8628 4.582701 TCTTTTGTGCATCGTTTCCAAT 57.417 36.364 0.00 0.00 0.00 3.16
4094 8629 4.377839 TTCTTTTGTGCATCGTTTCCAA 57.622 36.364 0.00 0.00 0.00 3.53
4095 8630 4.582701 ATTCTTTTGTGCATCGTTTCCA 57.417 36.364 0.00 0.00 0.00 3.53
4096 8631 4.558860 GCTATTCTTTTGTGCATCGTTTCC 59.441 41.667 0.00 0.00 0.00 3.13
4097 8632 5.393962 AGCTATTCTTTTGTGCATCGTTTC 58.606 37.500 0.00 0.00 0.00 2.78
4098 8633 5.376854 AGCTATTCTTTTGTGCATCGTTT 57.623 34.783 0.00 0.00 0.00 3.60
4099 8634 5.376854 AAGCTATTCTTTTGTGCATCGTT 57.623 34.783 0.00 0.00 0.00 3.85
4100 8635 6.683974 ATAAGCTATTCTTTTGTGCATCGT 57.316 33.333 0.00 0.00 36.25 3.73
4101 8636 9.746711 GTATATAAGCTATTCTTTTGTGCATCG 57.253 33.333 0.00 0.00 36.25 3.84
4115 8650 8.516234 GCTCACCGCATATAGTATATAAGCTAT 58.484 37.037 2.26 5.24 38.92 2.97
4116 8651 7.720074 AGCTCACCGCATATAGTATATAAGCTA 59.280 37.037 2.26 0.00 42.61 3.32
4117 8652 6.547880 AGCTCACCGCATATAGTATATAAGCT 59.452 38.462 2.26 7.56 42.61 3.74
4118 8653 6.740110 AGCTCACCGCATATAGTATATAAGC 58.260 40.000 2.26 2.94 42.61 3.09
4119 8654 7.931275 TGAGCTCACCGCATATAGTATATAAG 58.069 38.462 13.74 0.76 42.61 1.73
4120 8655 7.875327 TGAGCTCACCGCATATAGTATATAA 57.125 36.000 13.74 0.00 42.61 0.98
4121 8656 9.740710 ATATGAGCTCACCGCATATAGTATATA 57.259 33.333 20.97 1.53 42.68 0.86
4122 8657 6.968263 ATGAGCTCACCGCATATAGTATAT 57.032 37.500 20.97 0.00 42.61 0.86
4123 8658 9.000486 GTATATGAGCTCACCGCATATAGTATA 58.000 37.037 20.97 10.08 44.47 1.47
4124 8659 6.968263 ATATGAGCTCACCGCATATAGTAT 57.032 37.500 20.97 5.94 42.68 2.12
4125 8660 7.054751 AGTATATGAGCTCACCGCATATAGTA 58.945 38.462 20.97 3.52 44.26 1.82
4126 8661 5.888724 AGTATATGAGCTCACCGCATATAGT 59.111 40.000 20.97 15.69 44.47 2.12
4127 8662 6.384258 AGTATATGAGCTCACCGCATATAG 57.616 41.667 20.97 0.00 44.47 1.31
4128 8663 8.465273 AATAGTATATGAGCTCACCGCATATA 57.535 34.615 20.97 13.66 42.68 0.86
4129 8664 6.968263 ATAGTATATGAGCTCACCGCATAT 57.032 37.500 20.97 14.70 45.23 1.78
4130 8665 6.775594 AATAGTATATGAGCTCACCGCATA 57.224 37.500 20.97 7.57 42.61 3.14
4131 8666 5.667539 AATAGTATATGAGCTCACCGCAT 57.332 39.130 20.97 12.30 42.61 4.73
4132 8667 5.468540 AAATAGTATATGAGCTCACCGCA 57.531 39.130 20.97 5.02 42.61 5.69
4133 8668 5.926542 TGAAAATAGTATATGAGCTCACCGC 59.073 40.000 20.97 9.79 39.57 5.68
4134 8669 6.366332 GGTGAAAATAGTATATGAGCTCACCG 59.634 42.308 20.97 0.00 40.50 4.94
4135 8670 7.217200 TGGTGAAAATAGTATATGAGCTCACC 58.783 38.462 20.97 11.64 46.81 4.02
4136 8671 8.839310 ATGGTGAAAATAGTATATGAGCTCAC 57.161 34.615 20.97 6.22 0.00 3.51
4144 8679 9.442047 GCTGCTTCTATGGTGAAAATAGTATAT 57.558 33.333 0.00 0.00 0.00 0.86
4145 8680 8.428852 TGCTGCTTCTATGGTGAAAATAGTATA 58.571 33.333 0.00 0.00 0.00 1.47
4146 8681 7.282585 TGCTGCTTCTATGGTGAAAATAGTAT 58.717 34.615 0.00 0.00 0.00 2.12
4147 8682 6.649155 TGCTGCTTCTATGGTGAAAATAGTA 58.351 36.000 0.00 0.00 0.00 1.82
4148 8683 5.500234 TGCTGCTTCTATGGTGAAAATAGT 58.500 37.500 0.00 0.00 0.00 2.12
4149 8684 6.441093 TTGCTGCTTCTATGGTGAAAATAG 57.559 37.500 0.00 0.00 0.00 1.73
4150 8685 5.357878 CCTTGCTGCTTCTATGGTGAAAATA 59.642 40.000 0.00 0.00 0.00 1.40
4151 8686 4.159135 CCTTGCTGCTTCTATGGTGAAAAT 59.841 41.667 0.00 0.00 0.00 1.82
4152 8687 3.507233 CCTTGCTGCTTCTATGGTGAAAA 59.493 43.478 0.00 0.00 0.00 2.29
4153 8688 3.084039 CCTTGCTGCTTCTATGGTGAAA 58.916 45.455 0.00 0.00 0.00 2.69
4154 8689 2.618816 CCCTTGCTGCTTCTATGGTGAA 60.619 50.000 0.00 0.00 0.00 3.18
4155 8690 1.065199 CCCTTGCTGCTTCTATGGTGA 60.065 52.381 0.00 0.00 0.00 4.02
4156 8691 1.065199 TCCCTTGCTGCTTCTATGGTG 60.065 52.381 0.00 0.00 0.00 4.17
4157 8692 1.289160 TCCCTTGCTGCTTCTATGGT 58.711 50.000 0.00 0.00 0.00 3.55
4158 8693 2.092753 TCTTCCCTTGCTGCTTCTATGG 60.093 50.000 0.00 0.00 0.00 2.74
4159 8694 2.941720 GTCTTCCCTTGCTGCTTCTATG 59.058 50.000 0.00 0.00 0.00 2.23
4160 8695 2.843113 AGTCTTCCCTTGCTGCTTCTAT 59.157 45.455 0.00 0.00 0.00 1.98
4161 8696 2.260822 AGTCTTCCCTTGCTGCTTCTA 58.739 47.619 0.00 0.00 0.00 2.10
4162 8697 1.063183 AGTCTTCCCTTGCTGCTTCT 58.937 50.000 0.00 0.00 0.00 2.85
4163 8698 2.770164 TAGTCTTCCCTTGCTGCTTC 57.230 50.000 0.00 0.00 0.00 3.86
4164 8699 3.181439 ACTTTAGTCTTCCCTTGCTGCTT 60.181 43.478 0.00 0.00 0.00 3.91
4165 8700 2.373502 ACTTTAGTCTTCCCTTGCTGCT 59.626 45.455 0.00 0.00 0.00 4.24
4166 8701 2.784347 ACTTTAGTCTTCCCTTGCTGC 58.216 47.619 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.