Multiple sequence alignment - TraesCS6B01G115200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G115200 chr6B 100.000 4272 0 0 1 4272 100287571 100291842 0.000000e+00 7890
1 TraesCS6B01G115200 chrUn 95.576 3504 116 15 797 4272 21554223 21557715 0.000000e+00 5576
2 TraesCS6B01G115200 chr6A 95.883 1506 52 2 841 2336 55334487 55332982 0.000000e+00 2429
3 TraesCS6B01G115200 chr6A 86.778 1800 168 42 2498 4271 55332693 55330938 0.000000e+00 1941
4 TraesCS6B01G115200 chr6D 91.754 764 56 7 1 760 114311084 114310324 0.000000e+00 1055
5 TraesCS6B01G115200 chr7B 90.779 770 55 13 1 760 728687479 728688242 0.000000e+00 1014
6 TraesCS6B01G115200 chr7B 90.143 771 63 9 1 765 36964777 36964014 0.000000e+00 990
7 TraesCS6B01G115200 chr7B 90.039 763 67 7 1 760 243808728 243807972 0.000000e+00 979
8 TraesCS6B01G115200 chr5D 90.601 766 65 7 1 763 550194736 550195497 0.000000e+00 1009
9 TraesCS6B01G115200 chr2B 90.551 762 66 5 1 760 470467946 470468703 0.000000e+00 1003
10 TraesCS6B01G115200 chr5B 90.157 762 67 4 1 760 539933065 539932310 0.000000e+00 985
11 TraesCS6B01G115200 chr5B 89.791 764 73 5 1 762 620304245 620305005 0.000000e+00 974
12 TraesCS6B01G115200 chr7D 89.921 764 71 6 1 761 192686372 192685612 0.000000e+00 979
13 TraesCS6B01G115200 chr2A 74.648 923 197 28 1869 2779 382067034 382067931 1.450000e-99 374
14 TraesCS6B01G115200 chr2A 93.798 129 5 1 3056 3184 649003796 649003921 1.570000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G115200 chr6B 100287571 100291842 4271 False 7890 7890 100.0000 1 4272 1 chr6B.!!$F1 4271
1 TraesCS6B01G115200 chrUn 21554223 21557715 3492 False 5576 5576 95.5760 797 4272 1 chrUn.!!$F1 3475
2 TraesCS6B01G115200 chr6A 55330938 55334487 3549 True 2185 2429 91.3305 841 4271 2 chr6A.!!$R1 3430
3 TraesCS6B01G115200 chr6D 114310324 114311084 760 True 1055 1055 91.7540 1 760 1 chr6D.!!$R1 759
4 TraesCS6B01G115200 chr7B 728687479 728688242 763 False 1014 1014 90.7790 1 760 1 chr7B.!!$F1 759
5 TraesCS6B01G115200 chr7B 36964014 36964777 763 True 990 990 90.1430 1 765 1 chr7B.!!$R1 764
6 TraesCS6B01G115200 chr7B 243807972 243808728 756 True 979 979 90.0390 1 760 1 chr7B.!!$R2 759
7 TraesCS6B01G115200 chr5D 550194736 550195497 761 False 1009 1009 90.6010 1 763 1 chr5D.!!$F1 762
8 TraesCS6B01G115200 chr2B 470467946 470468703 757 False 1003 1003 90.5510 1 760 1 chr2B.!!$F1 759
9 TraesCS6B01G115200 chr5B 539932310 539933065 755 True 985 985 90.1570 1 760 1 chr5B.!!$R1 759
10 TraesCS6B01G115200 chr5B 620304245 620305005 760 False 974 974 89.7910 1 762 1 chr5B.!!$F1 761
11 TraesCS6B01G115200 chr7D 192685612 192686372 760 True 979 979 89.9210 1 761 1 chr7D.!!$R1 760
12 TraesCS6B01G115200 chr2A 382067034 382067931 897 False 374 374 74.6480 1869 2779 1 chr2A.!!$F1 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 783 0.467384 GCTGGAGATGCTCTTAGGCA 59.533 55.000 0.00 0.00 46.63 4.75 F
781 799 1.177401 GGCATCACCTTGGAAACCTC 58.823 55.000 0.00 0.00 34.51 3.85 F
2085 2126 1.202687 TGGTTCTTCTGCCTGTGACAG 60.203 52.381 5.42 5.42 36.44 3.51 F
2270 2312 0.537143 TGACTTTCCACATTGCGGCT 60.537 50.000 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1795 1.227999 TGAAACCAGCGAAGAAGGCG 61.228 55.000 0.0 0.0 35.00 5.52 R
2126 2167 1.665679 GGCATCACTGGTTGTATGACG 59.334 52.381 0.0 0.0 0.00 4.35 R
3184 3435 0.251916 TTCCCCAGTACGATGCAAGG 59.748 55.000 0.0 0.0 0.00 3.61 R
3853 4108 1.455822 TCTGTTCCACAAAGGGGGAT 58.544 50.000 0.0 0.0 38.24 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.202879 TCCCACTTTGCGAAGGTTCAT 60.203 47.619 18.07 0.00 37.19 2.57
222 224 1.446966 GAGCGAGCAGGAAGACCAC 60.447 63.158 0.00 0.00 38.94 4.16
253 255 3.523564 ACTGAACCATATTACAGGCAGGT 59.476 43.478 0.00 0.00 35.08 4.00
356 358 0.963225 TGCATCAACAACTGCAGCAT 59.037 45.000 15.27 0.00 43.11 3.79
559 570 2.305928 CCGAACCATGGCAAATATGGA 58.694 47.619 13.04 0.00 46.42 3.41
568 579 3.360867 TGGCAAATATGGACCGATTTGT 58.639 40.909 22.94 0.00 42.50 2.83
608 619 2.650778 GCCGAAACTGGGCCAAAG 59.349 61.111 8.04 3.68 44.97 2.77
734 747 2.599659 GCGATTTTCAAGCCTCTTTGG 58.400 47.619 0.00 0.00 39.35 3.28
735 748 2.228822 GCGATTTTCAAGCCTCTTTGGA 59.771 45.455 0.00 0.00 38.35 3.53
765 783 0.467384 GCTGGAGATGCTCTTAGGCA 59.533 55.000 0.00 0.00 46.63 4.75
780 798 3.363787 GGCATCACCTTGGAAACCT 57.636 52.632 0.00 0.00 34.51 3.50
781 799 1.177401 GGCATCACCTTGGAAACCTC 58.823 55.000 0.00 0.00 34.51 3.85
782 800 1.272147 GGCATCACCTTGGAAACCTCT 60.272 52.381 0.00 0.00 34.51 3.69
783 801 2.026262 GGCATCACCTTGGAAACCTCTA 60.026 50.000 0.00 0.00 34.51 2.43
784 802 3.561313 GGCATCACCTTGGAAACCTCTAA 60.561 47.826 0.00 0.00 34.51 2.10
785 803 4.079253 GCATCACCTTGGAAACCTCTAAA 58.921 43.478 0.00 0.00 0.00 1.85
786 804 4.522789 GCATCACCTTGGAAACCTCTAAAA 59.477 41.667 0.00 0.00 0.00 1.52
787 805 5.010617 GCATCACCTTGGAAACCTCTAAAAA 59.989 40.000 0.00 0.00 0.00 1.94
831 849 8.650143 TTGGAAAGACTAGCCTCAAATAAAAT 57.350 30.769 0.00 0.00 0.00 1.82
979 999 1.743995 GACCACCCAATCCGGTTCG 60.744 63.158 0.00 0.00 32.17 3.95
1383 1421 4.680237 TGGTGAGCCAAGCGTCCG 62.680 66.667 0.00 0.00 42.83 4.79
1594 1632 9.804758 AAGAGGTATATTTTTCACTCTTCTACG 57.195 33.333 0.00 0.00 40.20 3.51
1632 1670 7.230849 TCATAGAGCAAATGTGAAACCATTT 57.769 32.000 0.00 0.00 43.89 2.32
1688 1726 2.742372 GTGCCGCTGTCGATTGGT 60.742 61.111 0.00 0.00 38.10 3.67
1757 1795 1.823899 GGTGTTCCGGATGCCATCC 60.824 63.158 14.03 14.03 46.22 3.51
1769 1807 2.187946 CCATCCGCCTTCTTCGCT 59.812 61.111 0.00 0.00 0.00 4.93
1865 1903 1.321743 GCGTTGAGTATTCTGCTCACG 59.678 52.381 0.00 0.00 42.00 4.35
2013 2052 2.858745 TCCAGGTGGTTTCTTGCTAAC 58.141 47.619 0.00 0.00 36.34 2.34
2024 2063 5.529800 GGTTTCTTGCTAACTAACAAGGTCA 59.470 40.000 3.18 0.00 42.82 4.02
2085 2126 1.202687 TGGTTCTTCTGCCTGTGACAG 60.203 52.381 5.42 5.42 36.44 3.51
2126 2167 4.279922 ACCTATGCAAAACCAGTGGTTAAC 59.720 41.667 27.62 19.01 46.20 2.01
2270 2312 0.537143 TGACTTTCCACATTGCGGCT 60.537 50.000 0.00 0.00 0.00 5.52
2279 2321 1.522258 CACATTGCGGCTTTTGTTGTC 59.478 47.619 0.00 0.00 0.00 3.18
2370 2586 7.611467 TCATTTGTAATGTTCCTCTTGCATAGT 59.389 33.333 0.00 0.00 0.00 2.12
2429 2645 9.923143 ATTCAATCTTATGTGCAATATTGATGG 57.077 29.630 19.73 0.00 33.57 3.51
2476 2692 3.243602 TGCTACTTTCTGTTACGTCTGCA 60.244 43.478 0.00 0.00 0.00 4.41
2503 2732 9.250624 GAAGTCCTATATGCCGATCATATTTAC 57.749 37.037 12.97 9.90 43.91 2.01
2725 2960 2.031163 GTGGCAAGTCGTCTGGCT 59.969 61.111 8.95 0.00 40.30 4.75
2810 3050 6.741992 TCTATTCACATTTGTCATGACCAC 57.258 37.500 22.85 0.00 0.00 4.16
2902 3142 1.617357 GGTACCTTCGTCCTGTGTCTT 59.383 52.381 4.06 0.00 0.00 3.01
2907 3147 3.202906 CCTTCGTCCTGTGTCTTGAAAA 58.797 45.455 0.00 0.00 0.00 2.29
3097 3348 3.100503 GCAGAGCTCCACCCTAGCC 62.101 68.421 10.93 0.00 41.02 3.93
3184 3435 4.869861 GTCATGGCAATATTTGGTTTGACC 59.130 41.667 0.00 0.00 39.22 4.02
3232 3483 5.084818 TGCGAATAAGAGACATTCCTTCA 57.915 39.130 0.00 0.00 0.00 3.02
3343 3594 3.365265 CTGCTGCCGTTTGGGGAC 61.365 66.667 0.00 0.00 35.78 4.46
3413 3664 3.561725 CCATAGTAGCTACAAAAGGCAGC 59.438 47.826 25.28 0.00 36.04 5.25
3558 3809 3.544684 CATGTGCAGTAGGCTCCATTAA 58.455 45.455 0.00 0.00 45.15 1.40
3560 3811 4.235079 TGTGCAGTAGGCTCCATTAATT 57.765 40.909 0.00 0.00 45.15 1.40
3561 3812 5.366482 TGTGCAGTAGGCTCCATTAATTA 57.634 39.130 0.00 0.00 45.15 1.40
3664 3917 2.095213 GCATGTGCAATGCCAAAATCAG 59.905 45.455 17.74 0.00 41.59 2.90
3668 3921 1.000618 TGCAATGCCAAAATCAGCGAA 59.999 42.857 1.53 0.00 0.00 4.70
3699 3952 3.012730 TCCCAAGATGAACCCCATGAATT 59.987 43.478 0.00 0.00 35.17 2.17
3701 3954 4.961730 CCCAAGATGAACCCCATGAATTTA 59.038 41.667 0.00 0.00 35.17 1.40
3711 3964 6.599986 ACCCCATGAATTTATGTACCCTTA 57.400 37.500 9.16 0.00 0.00 2.69
3712 3965 6.370453 ACCCCATGAATTTATGTACCCTTAC 58.630 40.000 9.16 0.00 0.00 2.34
3739 3994 5.944007 AGTCCTTGTTTTTGCGTAATATCCT 59.056 36.000 0.00 0.00 0.00 3.24
3740 3995 6.433093 AGTCCTTGTTTTTGCGTAATATCCTT 59.567 34.615 0.00 0.00 0.00 3.36
3753 4008 7.132863 GCGTAATATCCTTTCAAATTCAGTCC 58.867 38.462 0.00 0.00 0.00 3.85
3768 4023 3.585862 TCAGTCCTTCTATGTCGCAAAC 58.414 45.455 0.00 0.00 0.00 2.93
3794 4049 7.632515 CGTGCTTAATCTAATTTTCACTCTTCG 59.367 37.037 0.00 0.00 0.00 3.79
3795 4050 7.905493 GTGCTTAATCTAATTTTCACTCTTCGG 59.095 37.037 0.00 0.00 0.00 4.30
3817 4072 4.751098 GGCAAAGCTGAATGTTGAATTCAA 59.249 37.500 16.91 16.91 37.55 2.69
3822 4077 7.750229 AAGCTGAATGTTGAATTCAAGACTA 57.250 32.000 21.05 8.66 37.55 2.59
3862 4117 7.766736 AGAGTTTAGTATACAATCCCCCTTT 57.233 36.000 5.50 0.00 0.00 3.11
3902 4157 2.851824 GACAGGCTTTTCGTTTGTGTTG 59.148 45.455 0.00 0.00 0.00 3.33
4134 4398 5.952526 TCACACTCTACATCAGTCGTTTA 57.047 39.130 0.00 0.00 0.00 2.01
4138 4402 6.806739 CACACTCTACATCAGTCGTTTAATGA 59.193 38.462 0.00 0.00 0.00 2.57
4140 4404 7.030165 CACTCTACATCAGTCGTTTAATGAGT 58.970 38.462 0.00 0.00 0.00 3.41
4165 4435 7.732222 ATCTCTTCTCCTGTCTATTTCACTT 57.268 36.000 0.00 0.00 0.00 3.16
4183 4453 5.415221 TCACTTTTGTTTTAAGTTGGCCAG 58.585 37.500 5.11 0.00 33.73 4.85
4266 4536 7.273188 TGTCGACGATAAGTAAGTCAAATTG 57.727 36.000 11.62 0.00 34.80 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.070758 GTTCTTGCCTCCTGACACAGA 59.929 52.381 0.00 0.00 32.44 3.41
22 23 0.473694 TGGGAGTTCTTGCCTCCTGA 60.474 55.000 6.43 0.00 46.43 3.86
57 58 0.034767 CATCCTTCCTGCAAGCCTCA 60.035 55.000 0.00 0.00 0.00 3.86
222 224 8.830580 CCTGTAATATGGTTCAGTGTCAAATAG 58.169 37.037 0.00 0.00 0.00 1.73
253 255 1.806542 GATCAACTTGCGCAAGAGGAA 59.193 47.619 46.69 30.58 40.79 3.36
522 533 3.543680 TCGGCCCAAATTCAACAAAAA 57.456 38.095 0.00 0.00 0.00 1.94
559 570 1.497991 CGATATCGGCACAAATCGGT 58.502 50.000 17.51 0.00 38.01 4.69
608 619 3.508840 CCGCAAATGACCCCGCTC 61.509 66.667 0.00 0.00 0.00 5.03
784 802 6.150976 CCAAGGTGGCTTTTCTTTTTCTTTTT 59.849 34.615 0.00 0.00 0.00 1.94
785 803 5.647658 CCAAGGTGGCTTTTCTTTTTCTTTT 59.352 36.000 0.00 0.00 0.00 2.27
786 804 5.045942 TCCAAGGTGGCTTTTCTTTTTCTTT 60.046 36.000 0.00 0.00 37.47 2.52
787 805 4.469586 TCCAAGGTGGCTTTTCTTTTTCTT 59.530 37.500 0.00 0.00 37.47 2.52
788 806 4.030216 TCCAAGGTGGCTTTTCTTTTTCT 58.970 39.130 0.00 0.00 37.47 2.52
789 807 4.400529 TCCAAGGTGGCTTTTCTTTTTC 57.599 40.909 0.00 0.00 37.47 2.29
790 808 4.835284 TTCCAAGGTGGCTTTTCTTTTT 57.165 36.364 0.00 0.00 37.47 1.94
791 809 4.469586 TCTTTCCAAGGTGGCTTTTCTTTT 59.530 37.500 0.00 0.00 37.47 2.27
792 810 4.030216 TCTTTCCAAGGTGGCTTTTCTTT 58.970 39.130 0.00 0.00 37.47 2.52
793 811 3.384789 GTCTTTCCAAGGTGGCTTTTCTT 59.615 43.478 0.00 0.00 37.47 2.52
794 812 2.959030 GTCTTTCCAAGGTGGCTTTTCT 59.041 45.455 0.00 0.00 37.47 2.52
795 813 2.959030 AGTCTTTCCAAGGTGGCTTTTC 59.041 45.455 0.00 0.00 37.47 2.29
800 818 1.454201 GCTAGTCTTTCCAAGGTGGC 58.546 55.000 0.00 0.00 37.47 5.01
828 846 9.489084 GTCTTTCCAAGCTGGTAAATTTTATTT 57.511 29.630 0.00 0.00 39.03 1.40
831 849 7.255801 CCTGTCTTTCCAAGCTGGTAAATTTTA 60.256 37.037 0.00 0.00 39.03 1.52
834 852 4.524328 CCTGTCTTTCCAAGCTGGTAAATT 59.476 41.667 0.00 0.00 39.03 1.82
836 854 3.117663 ACCTGTCTTTCCAAGCTGGTAAA 60.118 43.478 0.00 0.00 39.03 2.01
837 855 2.441750 ACCTGTCTTTCCAAGCTGGTAA 59.558 45.455 0.00 0.00 39.03 2.85
838 856 2.054799 ACCTGTCTTTCCAAGCTGGTA 58.945 47.619 0.00 0.00 39.03 3.25
843 863 0.823356 TGGCACCTGTCTTTCCAAGC 60.823 55.000 0.00 0.00 0.00 4.01
1087 1125 4.821589 CTGCGGCGGGGAAGAGAC 62.822 72.222 9.78 0.00 0.00 3.36
1383 1421 4.172073 AGAATCTTCTTGAAGCGTCCAGC 61.172 47.826 5.56 0.00 39.52 4.85
1504 1542 1.960250 GAGCATGATGCCTCCGAGC 60.960 63.158 14.72 0.00 46.52 5.03
1594 1632 3.737850 CTCTATGATCTTGGGTGAAGCC 58.262 50.000 0.00 0.00 0.00 4.35
1632 1670 2.160615 CACAACACACGACCAGACAAAA 59.839 45.455 0.00 0.00 0.00 2.44
1688 1726 1.563879 AGCATGTACTGGGCCATGTAA 59.436 47.619 6.72 4.03 40.42 2.41
1757 1795 1.227999 TGAAACCAGCGAAGAAGGCG 61.228 55.000 0.00 0.00 35.00 5.52
1865 1903 3.256136 CCGAAGATATGGTGGAGTAGGTC 59.744 52.174 0.00 0.00 0.00 3.85
2085 2126 6.294843 GCATAGGTATTCAGAAGGAGACCTAC 60.295 46.154 14.11 0.58 43.34 3.18
2126 2167 1.665679 GGCATCACTGGTTGTATGACG 59.334 52.381 0.00 0.00 0.00 4.35
2270 2312 3.002038 ACCCAGTAACCGACAACAAAA 57.998 42.857 0.00 0.00 0.00 2.44
2279 2321 2.265589 ACTTGGAAACCCAGTAACCG 57.734 50.000 0.00 0.00 34.71 4.44
2340 2556 8.970020 TGCAAGAGGAACATTACAAATGAATAT 58.030 29.630 6.64 0.00 0.00 1.28
2429 2645 7.721286 TCAAAGAAAAGAGATGACTCAGTTC 57.279 36.000 0.00 0.00 44.79 3.01
2476 2692 7.667575 AATATGATCGGCATATAGGACTTCT 57.332 36.000 10.66 0.00 46.84 2.85
2503 2732 7.118245 GGCAAAATTTCATTTCCTGTTAGAAGG 59.882 37.037 0.00 0.00 38.84 3.46
2806 3046 7.418337 AGTTTCAGTTTTGGAAATTAGTGGT 57.582 32.000 0.00 0.00 36.71 4.16
2845 3085 4.549668 ACAGGCCATTTATCATGATGGTT 58.450 39.130 18.72 2.88 43.77 3.67
2852 3092 6.482898 TGCAAATAACAGGCCATTTATCAT 57.517 33.333 5.01 0.00 0.00 2.45
2902 3142 9.371136 GATGATGTGATACTAGTTCACTTTTCA 57.629 33.333 25.19 23.46 43.12 2.69
3184 3435 0.251916 TTCCCCAGTACGATGCAAGG 59.748 55.000 0.00 0.00 0.00 3.61
3232 3483 3.425659 GGAAGCTTGTGGGAAGAATCTT 58.574 45.455 2.10 0.00 0.00 2.40
3343 3594 2.205074 GACATCATCCCTGTAACTGCG 58.795 52.381 0.00 0.00 0.00 5.18
3413 3664 2.665519 GCACAATCTGCGGTTTGTAGTG 60.666 50.000 19.12 10.31 35.72 2.74
3492 3743 3.244215 GGCATCTCATTATCCTTCCGTCA 60.244 47.826 0.00 0.00 0.00 4.35
3558 3809 3.577805 AAGGAGGCGCCACTAATTAAT 57.422 42.857 31.54 3.33 40.02 1.40
3560 3811 2.224209 GCTAAGGAGGCGCCACTAATTA 60.224 50.000 31.54 19.77 40.02 1.40
3561 3812 1.475213 GCTAAGGAGGCGCCACTAATT 60.475 52.381 31.54 19.71 40.02 1.40
3668 3921 3.766051 GGTTCATCTTGGGAAGAATTGCT 59.234 43.478 0.00 0.00 41.63 3.91
3671 3924 3.077391 TGGGGTTCATCTTGGGAAGAATT 59.923 43.478 0.00 0.00 41.63 2.17
3699 3952 5.548836 ACAAGGACTTGGTAAGGGTACATAA 59.451 40.000 15.72 0.00 44.45 1.90
3701 3954 3.914435 ACAAGGACTTGGTAAGGGTACAT 59.086 43.478 15.72 0.00 44.45 2.29
3711 3964 1.822371 ACGCAAAAACAAGGACTTGGT 59.178 42.857 15.72 6.90 43.33 3.67
3712 3965 2.577449 ACGCAAAAACAAGGACTTGG 57.423 45.000 15.72 0.00 44.45 3.61
3739 3994 6.128282 GCGACATAGAAGGACTGAATTTGAAA 60.128 38.462 0.00 0.00 0.00 2.69
3740 3995 5.351465 GCGACATAGAAGGACTGAATTTGAA 59.649 40.000 0.00 0.00 0.00 2.69
3753 4008 2.145053 GCACGTTTGCGACATAGAAG 57.855 50.000 0.00 0.00 39.50 2.85
3768 4023 7.632515 CGAAGAGTGAAAATTAGATTAAGCACG 59.367 37.037 0.00 0.00 0.00 5.34
3794 4049 4.309099 TGAATTCAACATTCAGCTTTGCC 58.691 39.130 5.45 0.00 33.55 4.52
3795 4050 5.693104 TCTTGAATTCAACATTCAGCTTTGC 59.307 36.000 16.91 0.00 38.98 3.68
3807 4062 8.999431 TGTCCAACTAATAGTCTTGAATTCAAC 58.001 33.333 16.91 9.35 0.00 3.18
3853 4108 1.455822 TCTGTTCCACAAAGGGGGAT 58.544 50.000 0.00 0.00 38.24 3.85
3862 4117 5.034852 TGTCTTCATCTTTCTGTTCCACA 57.965 39.130 0.00 0.00 0.00 4.17
3874 4129 3.409026 ACGAAAAGCCTGTCTTCATCT 57.591 42.857 0.00 0.00 32.88 2.90
3902 4157 5.106712 TGGCGACAACAGATATTTTGAGAAC 60.107 40.000 0.00 0.00 37.44 3.01
4134 4398 9.432982 AAATAGACAGGAGAAGAGATACTCATT 57.567 33.333 0.00 0.00 35.17 2.57
4138 4402 8.058847 AGTGAAATAGACAGGAGAAGAGATACT 58.941 37.037 0.00 0.00 0.00 2.12
4140 4404 8.830915 AAGTGAAATAGACAGGAGAAGAGATA 57.169 34.615 0.00 0.00 0.00 1.98
4165 4435 4.340950 CCTCTCTGGCCAACTTAAAACAAA 59.659 41.667 7.01 0.00 0.00 2.83
4183 4453 2.100605 AACGAAGCAATGGACCTCTC 57.899 50.000 0.00 0.00 0.00 3.20
4231 4501 1.710013 TCGTCGACATTCCTTTCAGC 58.290 50.000 17.16 0.00 0.00 4.26
4239 4509 7.502177 TTTGACTTACTTATCGTCGACATTC 57.498 36.000 17.16 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.