AutoCloner

Multiple sequence alignment - TraesCS6B01G115100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G115100	chr6B	100.000	2528	0	0	1	2528	98991452	98993979	0.000000e+00	4669
1	TraesCS6B01G115100	chr6B	88.525	671	77	0	770	1440	149055182	149055852	0.000000e+00	813
2	TraesCS6B01G115100	chr7D	94.192	1102	50	4	1441	2528	503747169	503746068	0.000000e+00	1668
3	TraesCS6B01G115100	chr7D	93.807	1098	57	4	1442	2528	169449609	169450706	0.000000e+00	1640
4	TraesCS6B01G115100	chr7D	93.551	1101	57	5	1442	2528	518919604	518920704	0.000000e+00	1628
5	TraesCS6B01G115100	chr7D	93.116	1104	59	5	1442	2528	8836661	8837764	0.000000e+00	1602
6	TraesCS6B01G115100	chr7D	89.671	668	69	0	773	1440	562148958	562148291	0.000000e+00	852
7	TraesCS6B01G115100	chr7D	88.873	683	75	1	759	1440	562149201	562148519	0.000000e+00	839
8	TraesCS6B01G115100	chr3D	93.750	1104	52	4	1442	2528	40004120	40003017	0.000000e+00	1640
9	TraesCS6B01G115100	chr4D	93.716	1098	55	5	1445	2528	434157803	434156706	0.000000e+00	1633
10	TraesCS6B01G115100	chr4D	93.490	1106	53	6	1440	2528	3616925	3618028	0.000000e+00	1626
11	TraesCS6B01G115100	chr1D	93.032	1105	59	5	1442	2528	65888148	65887044	0.000000e+00	1598
12	TraesCS6B01G115100	chrUn	92.370	1114	58	7	1441	2528	247787324	247788436	0.000000e+00	1561
13	TraesCS6B01G115100	chrUn	92.370	1114	58	7	1441	2528	298695315	298694203	0.000000e+00	1561
14	TraesCS6B01G115100	chrUn	89.276	1147	72	17	23	1125	20924414	20923275	0.000000e+00	1389
15	TraesCS6B01G115100	chrUn	89.304	776	75	4	673	1440	20705396	20706171	0.000000e+00	966
16	TraesCS6B01G115100	chr7B	91.880	1096	64	15	1443	2525	637306387	637307470	0.000000e+00	1507
17	TraesCS6B01G115100	chr7A	89.545	660	69	0	773	1432	647307011	647306352	0.000000e+00	837
18	TraesCS6B01G115100	chr7A	88.923	659	73	0	782	1440	647307230	647306572	0.000000e+00	813
19	TraesCS6B01G115100	chr7A	87.994	683	81	1	759	1440	647917465	647916783	0.000000e+00	806
20	TraesCS6B01G115100	chr6D	88.473	668	77	0	773	1440	75372542	75373209	0.000000e+00	808
21	TraesCS6B01G115100	chr6D	87.856	667	80	1	770	1435	75372311	75372977	0.000000e+00	782
22	TraesCS6B01G115100	chr6A	84.116	554	48	22	23	541	55708679	55709227	1.350000e-137	499

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G115100	chr6B	98991452	98993979	2527	False	4669.0	4669	100.0000	1	2528	1	chr6B.!!$F1	2527
1	TraesCS6B01G115100	chr6B	149055182	149055852	670	False	813.0	813	88.5250	770	1440	1	chr6B.!!$F2	670
2	TraesCS6B01G115100	chr7D	503746068	503747169	1101	True	1668.0	1668	94.1920	1441	2528	1	chr7D.!!$R1	1087
3	TraesCS6B01G115100	chr7D	169449609	169450706	1097	False	1640.0	1640	93.8070	1442	2528	1	chr7D.!!$F2	1086
4	TraesCS6B01G115100	chr7D	518919604	518920704	1100	False	1628.0	1628	93.5510	1442	2528	1	chr7D.!!$F3	1086
5	TraesCS6B01G115100	chr7D	8836661	8837764	1103	False	1602.0	1602	93.1160	1442	2528	1	chr7D.!!$F1	1086
6	TraesCS6B01G115100	chr7D	562148291	562149201	910	True	845.5	852	89.2720	759	1440	2	chr7D.!!$R2	681
7	TraesCS6B01G115100	chr3D	40003017	40004120	1103	True	1640.0	1640	93.7500	1442	2528	1	chr3D.!!$R1	1086
8	TraesCS6B01G115100	chr4D	434156706	434157803	1097	True	1633.0	1633	93.7160	1445	2528	1	chr4D.!!$R1	1083
9	TraesCS6B01G115100	chr4D	3616925	3618028	1103	False	1626.0	1626	93.4900	1440	2528	1	chr4D.!!$F1	1088
10	TraesCS6B01G115100	chr1D	65887044	65888148	1104	True	1598.0	1598	93.0320	1442	2528	1	chr1D.!!$R1	1086
11	TraesCS6B01G115100	chrUn	247787324	247788436	1112	False	1561.0	1561	92.3700	1441	2528	1	chrUn.!!$F2	1087
12	TraesCS6B01G115100	chrUn	298694203	298695315	1112	True	1561.0	1561	92.3700	1441	2528	1	chrUn.!!$R2	1087
13	TraesCS6B01G115100	chrUn	20923275	20924414	1139	True	1389.0	1389	89.2760	23	1125	1	chrUn.!!$R1	1102
14	TraesCS6B01G115100	chrUn	20705396	20706171	775	False	966.0	966	89.3040	673	1440	1	chrUn.!!$F1	767
15	TraesCS6B01G115100	chr7B	637306387	637307470	1083	False	1507.0	1507	91.8800	1443	2525	1	chr7B.!!$F1	1082
16	TraesCS6B01G115100	chr7A	647306352	647307230	878	True	825.0	837	89.2340	773	1440	2	chr7A.!!$R2	667
17	TraesCS6B01G115100	chr7A	647916783	647917465	682	True	806.0	806	87.9940	759	1440	1	chr7A.!!$R1	681
18	TraesCS6B01G115100	chr6D	75372311	75373209	898	False	795.0	808	88.1645	770	1440	2	chr6D.!!$F1	670
19	TraesCS6B01G115100	chr6A	55708679	55709227	548	False	499.0	499	84.1160	23	541	1	chr6A.!!$F1	518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
145	161	0.175760	TCGCTTCATCTAGGTGTGCC	59.824	55.0	14.63	0.56	0.00	5.01	F
855	926	0.374758	CCATCGACAATGTGAAGGCG	59.625	55.0	0.00	0.00	33.13	5.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1269	2024	0.036875	CCAAGGACTCCACCTCCAAC	59.963	60.0	0.0	0.0	39.62	3.77	R
1833	2622	0.469331	AACTGGACTCCTCACCGTCA	60.469	55.0	0.0	0.0	31.88	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	2.913777	TTCGATCACTCGTCGATTGT	57.086	45.000	11.76	0.00	46.19	2.71
41	42	1.636340	CGATTGGTGTCGATTCGGC	59.364	57.895	3.17	3.17	44.06	5.54
48	49	3.782443	GTCGATTCGGCCCACCCT	61.782	66.667	6.18	0.00	0.00	4.34
59	65	2.203070	CCACCCTATCAGGCGTGC	60.203	66.667	0.35	0.00	36.12	5.34
72	78	3.049674	CGTGCGTGGCTGGTTGAT	61.050	61.111	0.00	0.00	0.00	2.57
73	79	2.616330	CGTGCGTGGCTGGTTGATT	61.616	57.895	0.00	0.00	0.00	2.57
74	80	1.081242	GTGCGTGGCTGGTTGATTG	60.081	57.895	0.00	0.00	0.00	2.67
75	81	2.267351	TGCGTGGCTGGTTGATTGG	61.267	57.895	0.00	0.00	0.00	3.16
145	161	0.175760	TCGCTTCATCTAGGTGTGCC	59.824	55.000	14.63	0.56	0.00	5.01
162	178	1.440145	GCCTAGCTGGTTGATTCCGC	61.440	60.000	0.00	0.00	38.35	5.54
167	183	1.440145	GCTGGTTGATTCCGCTAGGC	61.440	60.000	0.00	0.00	37.47	3.93
172	188	0.465705	TTGATTCCGCTAGGCTCCAG	59.534	55.000	0.00	0.00	37.47	3.86
189	205	8.457238	AGGCTCCAGATTCTGAATTTATTTAC	57.543	34.615	15.36	0.00	32.44	2.01
190	206	7.503902	AGGCTCCAGATTCTGAATTTATTTACC	59.496	37.037	15.36	2.43	32.44	2.85
192	208	7.503902	GCTCCAGATTCTGAATTTATTTACCCT	59.496	37.037	15.36	0.00	32.44	4.34
313	356	6.890814	GCTGGGAGTTAGACTATATAGCCTTA	59.109	42.308	9.78	0.00	0.00	2.69
317	360	9.127277	GGGAGTTAGACTATATAGCCTTATCAG	57.873	40.741	9.78	0.00	0.00	2.90
409	464	4.919774	TTTGCTGGATAGGTTGGTTCTA	57.080	40.909	0.00	0.00	0.00	2.10
412	467	5.808366	TGCTGGATAGGTTGGTTCTATAG	57.192	43.478	0.00	0.00	0.00	1.31
545	608	7.283625	TGTTATTATTTCTGTTGCACCTGTT	57.716	32.000	0.00	0.00	0.00	3.16
553	616	2.620115	CTGTTGCACCTGTTCAGATTGT	59.380	45.455	1.00	0.00	0.00	2.71
563	626	2.948979	TGTTCAGATTGTTGTGTCCCAC	59.051	45.455	0.00	0.00	34.56	4.61
573	636	3.146066	GTTGTGTCCCACTTTGAGCATA	58.854	45.455	0.00	0.00	35.11	3.14
574	637	3.057969	TGTGTCCCACTTTGAGCATAG	57.942	47.619	0.00	0.00	35.11	2.23
576	639	3.264193	TGTGTCCCACTTTGAGCATAGAT	59.736	43.478	0.00	0.00	35.11	1.98
632	695	5.068636	CCAGGCTTAAGATTGTGCTGATAT	58.931	41.667	6.67	0.00	0.00	1.63
650	713	9.739276	TGCTGATATATTGGGATTTTTACTAGG	57.261	33.333	0.00	0.00	0.00	3.02
771	842	8.983702	ACTCTGGGTTTACTTTGTATTTACAA	57.016	30.769	0.00	0.00	43.80	2.41
849	920	0.721154	CGGACACCATCGACAATGTG	59.279	55.000	0.00	3.47	33.13	3.21
855	926	0.374758	CCATCGACAATGTGAAGGCG	59.625	55.000	0.00	0.00	33.13	5.52
862	933	3.265791	GACAATGTGAAGGCGAAGATCT	58.734	45.455	0.00	0.00	0.00	2.75
875	946	3.556999	CGAAGATCTAGGACAAGGAGGA	58.443	50.000	0.00	0.00	0.00	3.71
880	951	4.169856	AGATCTAGGACAAGGAGGACATCT	59.830	45.833	0.00	0.00	0.00	2.90
931	1230	2.365586	AAGCAGCTCGAGGATGGCT	61.366	57.895	15.58	1.83	36.70	4.75
933	1232	2.898738	CAGCTCGAGGATGGCTGT	59.101	61.111	15.58	0.00	45.59	4.40
936	1235	0.684479	AGCTCGAGGATGGCTGTACA	60.684	55.000	15.58	0.00	34.82	2.90
937	1236	0.390860	GCTCGAGGATGGCTGTACAT	59.609	55.000	15.58	0.00	0.00	2.29
1023	1550	2.886081	CAGATCTTCGTCAAGACCCTG	58.114	52.381	0.00	4.70	41.64	4.45
1164	1919	1.078848	GCTTGAGGATGGTCGCACT	60.079	57.895	0.00	0.00	0.00	4.40
1254	2009	1.699730	TCTTCGTCAAGACCCTGACA	58.300	50.000	4.75	0.00	45.03	3.58
1268	2023	1.064906	CCTGACAGGCAAGACCATCAT	60.065	52.381	8.99	0.00	43.14	2.45
1269	2024	2.014857	CTGACAGGCAAGACCATCATG	58.985	52.381	0.00	0.00	43.14	3.07
1270	2025	1.352017	TGACAGGCAAGACCATCATGT	59.648	47.619	0.00	0.00	43.14	3.21
1286	2041	1.352352	CATGTTGGAGGTGGAGTCCTT	59.648	52.381	11.33	0.00	38.02	3.36
1326	2081	0.984230	AGGCGAAGATCCAGGACAAA	59.016	50.000	0.00	0.00	0.00	2.83
1347	2102	3.241520	GGCATCCCCCTAGACCAC	58.758	66.667	0.00	0.00	0.00	4.16
1352	2107	2.194951	ATCCCCCTAGACCACCAGCA	62.195	60.000	0.00	0.00	0.00	4.41
1462	2217	6.542370	GCTTGAGTTAATTGCAGGGAAGTATA	59.458	38.462	0.00	0.00	0.00	1.47
1492	2250	4.755411	CAGTTGTAACGGATCAGTACCAT	58.245	43.478	0.00	0.00	0.00	3.55
1537	2295	1.503542	CATGTTTGAGGCTGGTCGC	59.496	57.895	0.00	0.00	38.13	5.19
1612	2370	0.331616	GGCCCCACCAGTTAGTTCAT	59.668	55.000	0.00	0.00	38.86	2.57
1690	2449	0.333993	TGGCTCGGTCTAACCCTAGT	59.666	55.000	0.00	0.00	33.75	2.57
1723	2500	3.591835	CTCTCCCTCTCCTCGCGC	61.592	72.222	0.00	0.00	0.00	6.86
1767	2556	4.329545	GGTGGCTGGAGCAACGGA	62.330	66.667	0.20	0.00	45.80	4.69
1785	2574	4.789123	GGCGTTGTGGGCGGGTAT	62.789	66.667	0.00	0.00	0.00	2.73
1810	2599	3.423380	TCCCTAGACTCGGGAGCA	58.577	61.111	10.73	0.00	45.67	4.26
1833	2622	1.069227	GCGCACAAAGGAATCGAAGTT	60.069	47.619	0.30	0.00	0.00	2.66
1868	2657	3.570975	TCCAGTTCGTCTGCTTACTACAA	59.429	43.478	5.20	0.00	42.38	2.41
1892	2681	3.461773	CGACGAGGGCATGGAGGT	61.462	66.667	0.00	0.00	0.00	3.85
2056	2846	3.050523	TCGGGCTAGGGTTAGGTTTAT	57.949	47.619	0.00	0.00	0.00	1.40
2091	2894	5.569355	TGTCCATTGTAGTTTGGATGATGT	58.431	37.500	0.00	0.00	43.61	3.06
2206	3009	7.128331	CACTGATGCGAACATAAGGATTTAAG	58.872	38.462	0.00	0.00	38.92	1.85
2211	3014	7.441890	TGCGAACATAAGGATTTAAGTTCAA	57.558	32.000	12.81	2.17	42.96	2.69
2325	3128	7.630082	GCAAATTAAGAAGCAGAATGAGGACAT	60.630	37.037	0.00	0.00	39.69	3.06
2330	3133	6.749923	AGAAGCAGAATGAGGACATTTTAC	57.250	37.500	0.00	0.00	45.30	2.01
2408	3211	5.241728	AGTGAGGAAAAATTAGCCACAGTTC	59.758	40.000	0.00	0.00	0.00	3.01
2474	3277	5.066375	GTGCTTGCTGTTAATGATCATGGTA	59.934	40.000	9.46	0.00	0.00	3.25
2477	3280	7.501892	TGCTTGCTGTTAATGATCATGGTATTA	59.498	33.333	9.46	0.00	0.00	0.98
2497	3300	9.331282	GGTATTATTTATGAGAGTCAAAGCAGT	57.669	33.333	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	1.467875	GGACAATCGACGAGTGATCG	58.532	55.000	29.68	5.57	41.00	3.69
6	7	1.092348	TCGGACAATCGACGAGTGAT	58.908	50.000	29.68	14.91	33.92	3.06
7	8	1.092348	ATCGGACAATCGACGAGTGA	58.908	50.000	29.68	9.46	42.21	3.41
8	9	1.583856	CAATCGGACAATCGACGAGTG	59.416	52.381	22.47	22.47	44.26	3.51
10	11	1.200483	CCAATCGGACAATCGACGAG	58.800	55.000	3.01	0.00	42.21	4.18
11	12	0.528924	ACCAATCGGACAATCGACGA	59.471	50.000	0.00	0.00	42.21	4.20
12	13	0.645355	CACCAATCGGACAATCGACG	59.355	55.000	0.00	0.00	42.21	5.12
13	14	1.659098	GACACCAATCGGACAATCGAC	59.341	52.381	0.00	0.00	42.21	4.20
15	16	0.645355	CGACACCAATCGGACAATCG	59.355	55.000	0.00	0.00	38.47	3.34
16	17	2.004583	TCGACACCAATCGGACAATC	57.995	50.000	0.00	0.00	42.50	2.67
17	18	2.691409	ATCGACACCAATCGGACAAT	57.309	45.000	0.00	0.00	42.50	2.71
18	19	2.343101	GAATCGACACCAATCGGACAA	58.657	47.619	0.00	0.00	42.50	3.18
19	20	1.734377	CGAATCGACACCAATCGGACA	60.734	52.381	0.00	0.00	42.50	4.02
20	21	0.921347	CGAATCGACACCAATCGGAC	59.079	55.000	0.00	0.00	42.50	4.79
21	22	3.339061	CGAATCGACACCAATCGGA	57.661	52.632	0.00	0.00	42.50	4.55
41	42	2.505982	CACGCCTGATAGGGTGGG	59.494	66.667	1.16	0.00	40.83	4.61
48	49	3.770040	AGCCACGCACGCCTGATA	61.770	61.111	0.00	0.00	0.00	2.15
59	65	0.673437	AAACCAATCAACCAGCCACG	59.327	50.000	0.00	0.00	0.00	4.94
72	78	1.096416	AACCAAACGAGCGAAACCAA	58.904	45.000	0.00	0.00	0.00	3.67
73	79	0.378962	CAACCAAACGAGCGAAACCA	59.621	50.000	0.00	0.00	0.00	3.67
74	80	0.933047	GCAACCAAACGAGCGAAACC	60.933	55.000	0.00	0.00	0.00	3.27
75	81	2.491308	GCAACCAAACGAGCGAAAC	58.509	52.632	0.00	0.00	0.00	2.78
145	161	2.546795	CCTAGCGGAATCAACCAGCTAG	60.547	54.545	20.25	20.25	46.43	3.42
162	178	8.688747	AAATAAATTCAGAATCTGGAGCCTAG	57.311	34.615	10.71	0.00	31.51	3.02
167	183	8.986929	AGGGTAAATAAATTCAGAATCTGGAG	57.013	34.615	10.71	0.00	31.51	3.86
189	205	4.166144	AGGGTGAACCATGAATAAGTAGGG	59.834	45.833	1.16	0.00	43.89	3.53
190	206	5.373812	AGGGTGAACCATGAATAAGTAGG	57.626	43.478	1.16	0.00	43.89	3.18
192	208	6.134535	ACAAGGGTGAACCATGAATAAGTA	57.865	37.500	0.00	0.00	40.39	2.24
278	299	5.076873	GTCTAACTCCCAGCAGATCTATCT	58.923	45.833	0.00	0.00	37.72	1.98
279	300	5.076873	AGTCTAACTCCCAGCAGATCTATC	58.923	45.833	0.00	0.00	0.00	2.08
291	330	9.127277	CTGATAAGGCTATATAGTCTAACTCCC	57.873	40.741	17.10	4.23	37.25	4.30
313	356	1.822990	CACAATCTTTGGCCTGCTGAT	59.177	47.619	3.32	0.00	34.12	2.90
317	360	0.389426	CAGCACAATCTTTGGCCTGC	60.389	55.000	3.32	2.11	32.28	4.85
531	594	2.880268	CAATCTGAACAGGTGCAACAGA	59.120	45.455	3.64	0.00	39.98	3.41
593	656	6.613153	AAGCCTGGTGAGAAGGATATATAC	57.387	41.667	0.00	0.00	36.91	1.47
600	663	2.902608	TCTTAAGCCTGGTGAGAAGGA	58.097	47.619	0.00	0.00	36.91	3.36
609	672	2.715046	TCAGCACAATCTTAAGCCTGG	58.285	47.619	0.00	0.00	0.00	4.45
711	775	8.558700	GTTGAAAGGAAACATGCAAACATAAAT	58.441	29.630	0.00	0.00	33.67	1.40
719	784	3.132646	AGCAGTTGAAAGGAAACATGCAA	59.867	39.130	0.00	0.00	35.74	4.08
771	842	3.760684	GGGTCTTCACAAAGATCTGCATT	59.239	43.478	0.00	0.00	43.26	3.56
849	920	3.491792	CCTTGTCCTAGATCTTCGCCTTC	60.492	52.174	0.00	0.00	0.00	3.46
855	926	4.282496	TGTCCTCCTTGTCCTAGATCTTC	58.718	47.826	0.00	0.00	0.00	2.87
875	946	1.229625	TGCTGGTCCAGGGAGATGT	60.230	57.895	20.72	0.00	31.21	3.06
931	1230	5.411361	GGATGTTGTAGTCAGCAAATGTACA	59.589	40.000	0.00	0.00	38.21	2.90
933	1232	5.555966	TGGATGTTGTAGTCAGCAAATGTA	58.444	37.500	0.00	0.00	38.21	2.29
936	1235	4.910195	TCTGGATGTTGTAGTCAGCAAAT	58.090	39.130	0.00	0.00	38.21	2.32
937	1236	4.350368	TCTGGATGTTGTAGTCAGCAAA	57.650	40.909	0.00	0.00	38.21	3.68
999	1298	3.181475	GGGTCTTGACGAAGATCTGCATA	60.181	47.826	0.51	0.00	40.40	3.14
1023	1550	1.003839	TGTGATGGTCTTGCCCGTC	60.004	57.895	0.00	0.00	40.37	4.79
1026	1553	0.962356	CCAGTGTGATGGTCTTGCCC	60.962	60.000	0.00	0.00	35.47	5.36
1164	1919	3.578282	TCTGGATGTTGTAGTCAGCAAGA	59.422	43.478	0.00	0.00	38.21	3.02
1254	2009	1.355381	TCCAACATGATGGTCTTGCCT	59.645	47.619	20.33	0.00	41.46	4.75
1268	2023	0.764890	CAAGGACTCCACCTCCAACA	59.235	55.000	0.00	0.00	39.62	3.33
1269	2024	0.036875	CCAAGGACTCCACCTCCAAC	59.963	60.000	0.00	0.00	39.62	3.77
1270	2025	0.104672	TCCAAGGACTCCACCTCCAA	60.105	55.000	0.00	0.00	39.62	3.53
1286	2041	0.598942	CACGTTGTCGATGGTGTCCA	60.599	55.000	0.00	0.00	40.62	4.02
1340	2095	3.037851	AGATGAGATGCTGGTGGTCTA	57.962	47.619	0.00	0.00	0.00	2.59
1376	2131	2.202987	GAGTGCGGCCATCCTCAG	60.203	66.667	2.24	0.00	0.00	3.35
1537	2295	2.321213	GGCTTAGCCCGTATTGCAG	58.679	57.895	13.12	0.00	44.06	4.41
1605	2363	1.472026	GGTTCGGCGGCTTATGAACTA	60.472	52.381	20.83	0.00	40.34	2.24
1665	2424	0.606604	GTTAGACCGAGCCAAGACCA	59.393	55.000	0.00	0.00	0.00	4.02
1690	2449	2.781174	GGAGAGGGAGAGGAGAGAACTA	59.219	54.545	0.00	0.00	0.00	2.24
1798	2587	2.185350	CGCATTGCTCCCGAGTCT	59.815	61.111	7.12	0.00	0.00	3.24
1810	2599	1.164411	TCGATTCCTTTGTGCGCATT	58.836	45.000	15.91	0.00	0.00	3.56
1833	2622	0.469331	AACTGGACTCCTCACCGTCA	60.469	55.000	0.00	0.00	31.88	4.35
1892	2681	4.783621	GCTCCATGGACAGCGGCA	62.784	66.667	11.44	0.00	0.00	5.69
2056	2846	9.829507	AAACTACAATGGACATCAAAATTTCAA	57.170	25.926	0.00	0.00	0.00	2.69
2091	2894	5.640147	AGTGAATCCTAACATCCCAAACAA	58.360	37.500	0.00	0.00	0.00	2.83
2206	3009	6.753279	CCATGTGGTACAATTCATCATTGAAC	59.247	38.462	1.59	0.00	44.78	3.18
2211	3014	4.079269	TCCCCATGTGGTACAATTCATCAT	60.079	41.667	0.00	0.00	44.16	2.45
2325	3128	7.497909	CCCTGACTAACAAGTTCAGAAGTAAAA	59.502	37.037	0.00	0.00	0.00	1.52
2330	3133	3.748568	GCCCTGACTAACAAGTTCAGAAG	59.251	47.826	0.00	0.00	0.00	2.85
2408	3211	9.770097	ATCATACACAACAGGTTCTTCATATAG	57.230	33.333	0.00	0.00	0.00	1.31
2477	3280	7.880195	ACTGTTACTGCTTTGACTCTCATAAAT	59.120	33.333	0.00	0.00	0.00	1.40
2497	3300	5.771666	AGGTTGTACTAGTGCACTACTGTTA	59.228	40.000	22.67	9.88	40.65	2.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.