Multiple sequence alignment - TraesCS6B01G114900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G114900 chr6B 100.000 4581 0 0 1 4581 98862111 98857531 0.000000e+00 8460.0
1 TraesCS6B01G114900 chr6B 82.274 299 28 8 4078 4357 644809045 644808753 7.660000e-58 235.0
2 TraesCS6B01G114900 chr6A 91.966 2091 120 28 1127 3206 55554687 55552634 0.000000e+00 2887.0
3 TraesCS6B01G114900 chr6A 91.247 834 38 12 3265 4078 55552514 55551696 0.000000e+00 1103.0
4 TraesCS6B01G114900 chr6A 87.706 911 100 7 1781 2687 55562298 55561396 0.000000e+00 1051.0
5 TraesCS6B01G114900 chr6A 88.935 479 44 2 2688 3165 55561017 55560547 2.380000e-162 582.0
6 TraesCS6B01G114900 chr6A 84.365 307 31 14 4283 4581 55551651 55551354 7.500000e-73 285.0
7 TraesCS6B01G114900 chr6A 84.556 259 24 5 3283 3541 55558908 55558666 4.580000e-60 243.0
8 TraesCS6B01G114900 chr6A 87.500 208 21 1 4078 4285 594857758 594857556 7.660000e-58 235.0
9 TraesCS6B01G114900 chr6A 96.117 103 4 0 809 911 55555279 55555177 7.880000e-38 169.0
10 TraesCS6B01G114900 chr6A 100.000 63 0 0 989 1051 55555149 55555087 2.900000e-22 117.0
11 TraesCS6B01G114900 chr6A 91.837 49 4 0 3179 3227 55559125 55559077 8.220000e-08 69.4
12 TraesCS6B01G114900 chrUn 92.190 1434 60 22 2672 4102 21197099 21198483 0.000000e+00 1980.0
13 TraesCS6B01G114900 chrUn 94.605 1001 47 7 1662 2658 21195980 21196977 0.000000e+00 1543.0
14 TraesCS6B01G114900 chrUn 90.143 771 53 14 1 763 21194392 21195147 0.000000e+00 981.0
15 TraesCS6B01G114900 chrUn 90.429 606 34 10 990 1587 21195395 21195984 0.000000e+00 776.0
16 TraesCS6B01G114900 chrUn 89.844 256 13 8 4334 4581 21198695 21198945 2.660000e-82 316.0
17 TraesCS6B01G114900 chrUn 95.946 148 4 2 766 912 21195248 21195394 5.920000e-59 239.0
18 TraesCS6B01G114900 chr1B 85.567 291 20 7 4081 4354 390879118 390878833 7.500000e-73 285.0
19 TraesCS6B01G114900 chr1B 94.595 37 2 0 723 759 32476709 32476673 1.780000e-04 58.4
20 TraesCS6B01G114900 chr2D 87.562 201 20 1 4079 4279 30458435 30458630 1.280000e-55 228.0
21 TraesCS6B01G114900 chr4B 87.437 199 19 2 4080 4277 399269770 399269577 1.660000e-54 224.0
22 TraesCS6B01G114900 chr4B 87.766 188 16 2 4081 4268 146469672 146469492 3.590000e-51 213.0
23 TraesCS6B01G114900 chr4B 88.636 176 14 2 4078 4253 66976603 66976434 4.640000e-50 209.0
24 TraesCS6B01G114900 chr3B 90.000 170 12 1 4081 4250 672783820 672783984 9.980000e-52 215.0
25 TraesCS6B01G114900 chr3B 92.593 54 4 0 4283 4336 119469462 119469515 1.370000e-10 78.7
26 TraesCS6B01G114900 chr2A 86.528 193 19 3 4077 4268 717005080 717004894 6.010000e-49 206.0
27 TraesCS6B01G114900 chr5B 97.297 37 1 0 723 759 324964741 324964777 3.830000e-06 63.9
28 TraesCS6B01G114900 chr1A 97.297 37 1 0 723 759 349999487 349999523 3.830000e-06 63.9
29 TraesCS6B01G114900 chr3A 94.737 38 2 0 722 759 354424200 354424237 4.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G114900 chr6B 98857531 98862111 4580 True 8460.000000 8460 100.000000 1 4581 1 chr6B.!!$R1 4580
1 TraesCS6B01G114900 chr6A 55551354 55562298 10944 True 722.933333 2887 90.747667 809 4581 9 chr6A.!!$R2 3772
2 TraesCS6B01G114900 chrUn 21194392 21198945 4553 False 972.500000 1980 92.192833 1 4581 6 chrUn.!!$F1 4580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 7137 0.179192 CACTGCACACACACACACAC 60.179 55.0 0.0 0.0 0.00 3.82 F
928 7141 0.454285 GCACACACACACACACACAC 60.454 55.0 0.0 0.0 0.00 3.82 F
1519 8065 0.563173 TGGTTTGGGAATTGGGGTGA 59.437 50.0 0.0 0.0 0.00 4.02 F
3159 9898 0.244450 CCGGCAGGAAGTACGTTGTA 59.756 55.0 0.0 0.0 41.02 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2224 8855 0.813821 GAAGAAATGAGGGCAGCACC 59.186 55.000 0.00 0.00 37.93 5.01 R
2554 9185 2.037121 TCAAGAGATGCCACGACTTTCA 59.963 45.455 0.00 0.00 0.00 2.69 R
3317 10144 0.387565 ACCCAAATTTGTGTGCCGAC 59.612 50.000 16.73 0.00 0.00 4.79 R
4102 10951 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 1.152567 CCCAGTTTGAGGTTGGGCA 60.153 57.895 0.00 0.00 44.63 5.36
176 177 1.172180 ATGGCGTTATCAATGGCCCG 61.172 55.000 0.00 0.00 44.96 6.13
193 194 1.301479 CGGAATAAGGCCCCTACGC 60.301 63.158 0.00 0.00 0.00 4.42
239 240 3.934391 GACGTTGAGGGAGGGCGTG 62.934 68.421 0.00 0.00 35.86 5.34
241 242 2.358737 GTTGAGGGAGGGCGTGTG 60.359 66.667 0.00 0.00 0.00 3.82
317 318 0.797249 GGTCTTCGACGATGTGGACG 60.797 60.000 10.18 0.00 32.65 4.79
327 328 1.352156 GATGTGGACGCCGACAACTC 61.352 60.000 0.00 0.00 0.00 3.01
342 343 3.714391 ACAACTCGTGTTTGGTCTACTC 58.286 45.455 0.00 0.00 37.01 2.59
361 362 1.344942 CGCTTCTTCTCCGTTGGACG 61.345 60.000 0.00 0.00 42.11 4.79
387 388 6.182627 AGCATGACCAACTTCATCTTTATCA 58.817 36.000 0.00 0.00 33.74 2.15
414 416 2.124695 CCAGGTAAGCCGCCCTTC 60.125 66.667 0.00 0.00 40.50 3.46
428 430 1.202545 GCCCTTCGTTCTATCTGGTCC 60.203 57.143 0.00 0.00 0.00 4.46
471 473 4.068599 CCTTTTTCGCCTTCTTCTTCTCT 58.931 43.478 0.00 0.00 0.00 3.10
491 493 4.780815 TCTGTGACAACAATATGATCCCC 58.219 43.478 0.00 0.00 35.37 4.81
533 536 4.537135 TCTGGTTTTAGCGATGAGTTCT 57.463 40.909 0.00 0.00 0.00 3.01
536 539 2.603560 GGTTTTAGCGATGAGTTCTCGG 59.396 50.000 0.00 0.00 36.65 4.63
537 540 1.922570 TTTAGCGATGAGTTCTCGGC 58.077 50.000 0.00 0.00 36.65 5.54
584 587 2.413765 GCTCGGAGGCTACTTCGG 59.586 66.667 7.20 0.00 45.93 4.30
655 658 7.716612 ACAACTTTAATATATGCTTTGGCCTC 58.283 34.615 3.32 0.00 37.74 4.70
657 660 7.751768 ACTTTAATATATGCTTTGGCCTCTC 57.248 36.000 3.32 0.00 37.74 3.20
658 661 7.290061 ACTTTAATATATGCTTTGGCCTCTCA 58.710 34.615 3.32 0.00 37.74 3.27
670 674 2.026822 TGGCCTCTCACCAAGAAAGATC 60.027 50.000 3.32 0.00 33.12 2.75
862 7074 1.293498 CAACCCGACCTCTGGACTG 59.707 63.158 0.00 0.00 0.00 3.51
912 7125 0.323725 ATCCATTCCACCCACTGCAC 60.324 55.000 0.00 0.00 0.00 4.57
913 7126 1.228521 CCATTCCACCCACTGCACA 60.229 57.895 0.00 0.00 0.00 4.57
914 7127 1.526575 CCATTCCACCCACTGCACAC 61.527 60.000 0.00 0.00 0.00 3.82
915 7128 0.822944 CATTCCACCCACTGCACACA 60.823 55.000 0.00 0.00 0.00 3.72
916 7129 0.823356 ATTCCACCCACTGCACACAC 60.823 55.000 0.00 0.00 0.00 3.82
917 7130 2.124362 CCACCCACTGCACACACA 60.124 61.111 0.00 0.00 0.00 3.72
918 7131 2.480610 CCACCCACTGCACACACAC 61.481 63.158 0.00 0.00 0.00 3.82
919 7132 1.748500 CACCCACTGCACACACACA 60.749 57.895 0.00 0.00 0.00 3.72
920 7133 1.748879 ACCCACTGCACACACACAC 60.749 57.895 0.00 0.00 0.00 3.82
921 7134 1.748500 CCCACTGCACACACACACA 60.749 57.895 0.00 0.00 0.00 3.72
922 7135 1.429021 CCACTGCACACACACACAC 59.571 57.895 0.00 0.00 0.00 3.82
923 7136 1.304509 CCACTGCACACACACACACA 61.305 55.000 0.00 0.00 0.00 3.72
924 7137 0.179192 CACTGCACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
925 7138 0.605050 ACTGCACACACACACACACA 60.605 50.000 0.00 0.00 0.00 3.72
926 7139 0.179192 CTGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
927 7140 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
928 7141 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
929 7142 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
930 7143 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
931 7144 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
932 7145 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
933 7146 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
934 7147 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
935 7148 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
936 7149 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
937 7150 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
938 7151 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
939 7152 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
940 7153 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
941 7154 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
942 7155 2.159184 ACACACACACACACAGAGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
943 7156 2.099756 CACACACACACACAGAGAGAGA 59.900 50.000 0.00 0.00 0.00 3.10
944 7157 2.360483 ACACACACACACAGAGAGAGAG 59.640 50.000 0.00 0.00 0.00 3.20
945 7158 2.620585 CACACACACACAGAGAGAGAGA 59.379 50.000 0.00 0.00 0.00 3.10
946 7159 2.884012 ACACACACACAGAGAGAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
947 7160 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
948 7161 3.189080 CACACACACAGAGAGAGAGAGAG 59.811 52.174 0.00 0.00 0.00 3.20
949 7162 3.072330 ACACACACAGAGAGAGAGAGAGA 59.928 47.826 0.00 0.00 0.00 3.10
950 7163 3.686241 CACACACAGAGAGAGAGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
955 7168 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
959 7172 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
971 7184 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
974 7187 6.441924 AGAGAGAGAGAGAGAGAGAGAGAAAA 59.558 42.308 0.00 0.00 0.00 2.29
976 7189 5.501156 AGAGAGAGAGAGAGAGAGAAAACC 58.499 45.833 0.00 0.00 0.00 3.27
977 7190 5.014123 AGAGAGAGAGAGAGAGAGAAAACCA 59.986 44.000 0.00 0.00 0.00 3.67
978 7191 5.256474 AGAGAGAGAGAGAGAGAAAACCAG 58.744 45.833 0.00 0.00 0.00 4.00
979 7192 4.344104 AGAGAGAGAGAGAGAAAACCAGG 58.656 47.826 0.00 0.00 0.00 4.45
980 7193 4.044065 AGAGAGAGAGAGAGAAAACCAGGA 59.956 45.833 0.00 0.00 0.00 3.86
981 7194 4.746466 AGAGAGAGAGAGAAAACCAGGAA 58.254 43.478 0.00 0.00 0.00 3.36
982 7195 4.772100 AGAGAGAGAGAGAAAACCAGGAAG 59.228 45.833 0.00 0.00 0.00 3.46
983 7196 4.746466 AGAGAGAGAGAAAACCAGGAAGA 58.254 43.478 0.00 0.00 0.00 2.87
984 7197 5.151454 AGAGAGAGAGAAAACCAGGAAGAA 58.849 41.667 0.00 0.00 0.00 2.52
985 7198 5.011635 AGAGAGAGAGAAAACCAGGAAGAAC 59.988 44.000 0.00 0.00 0.00 3.01
986 7199 4.041075 AGAGAGAGAAAACCAGGAAGAACC 59.959 45.833 0.00 0.00 39.35 3.62
987 7200 3.716872 AGAGAGAAAACCAGGAAGAACCA 59.283 43.478 0.00 0.00 42.04 3.67
1062 7275 3.610911 CACCAAGGAGATGAGGGTAAAC 58.389 50.000 0.00 0.00 0.00 2.01
1096 7309 4.179599 CCCCTCCCTCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1097 7310 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1098 7311 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1099 7312 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1100 7313 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
1101 7314 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1102 7315 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1117 7330 0.921256 CTCCCCATCCACCCCTTTCT 60.921 60.000 0.00 0.00 0.00 2.52
1263 7800 2.432628 CCGACAGGCGTTCCAGTC 60.433 66.667 0.00 0.00 43.22 3.51
1287 7824 1.001641 GCCAATCTGGACCTGTGCT 60.002 57.895 0.00 0.00 40.96 4.40
1295 7832 1.073897 GGACCTGTGCTCTGGCTTT 59.926 57.895 11.20 0.00 39.59 3.51
1298 7835 1.807142 GACCTGTGCTCTGGCTTTTAC 59.193 52.381 11.20 0.00 39.59 2.01
1355 7892 1.607148 CGAGTTCTTGGTTTTGTCCCC 59.393 52.381 0.00 0.00 0.00 4.81
1356 7893 2.748465 CGAGTTCTTGGTTTTGTCCCCT 60.748 50.000 0.00 0.00 0.00 4.79
1357 7894 2.623416 GAGTTCTTGGTTTTGTCCCCTG 59.377 50.000 0.00 0.00 0.00 4.45
1358 7895 1.686587 GTTCTTGGTTTTGTCCCCTGG 59.313 52.381 0.00 0.00 0.00 4.45
1359 7896 1.227249 TCTTGGTTTTGTCCCCTGGA 58.773 50.000 0.00 0.00 0.00 3.86
1467 8006 1.305287 GGGGCAGGTCCGGTTAATT 59.695 57.895 0.00 0.00 34.94 1.40
1494 8033 0.807496 GCCAAGTGAGCAATCTGTCC 59.193 55.000 0.00 0.00 0.00 4.02
1514 8060 2.971307 CCGAAATGGTTTGGGAATTGG 58.029 47.619 0.00 0.00 40.55 3.16
1515 8061 2.354604 CCGAAATGGTTTGGGAATTGGG 60.355 50.000 0.00 0.00 40.55 4.12
1516 8062 2.354604 CGAAATGGTTTGGGAATTGGGG 60.355 50.000 0.00 0.00 0.00 4.96
1517 8063 2.431687 AATGGTTTGGGAATTGGGGT 57.568 45.000 0.00 0.00 0.00 4.95
1518 8064 1.655372 ATGGTTTGGGAATTGGGGTG 58.345 50.000 0.00 0.00 0.00 4.61
1519 8065 0.563173 TGGTTTGGGAATTGGGGTGA 59.437 50.000 0.00 0.00 0.00 4.02
1583 8211 7.221067 CGTACTGACTCTCAATCCAGTTTATTC 59.779 40.741 0.00 0.00 40.07 1.75
1588 8216 6.240894 ACTCTCAATCCAGTTTATTCTGCAA 58.759 36.000 0.00 0.00 34.47 4.08
1589 8217 6.716628 ACTCTCAATCCAGTTTATTCTGCAAA 59.283 34.615 0.00 0.00 34.47 3.68
1590 8218 7.094463 ACTCTCAATCCAGTTTATTCTGCAAAG 60.094 37.037 0.00 0.00 34.47 2.77
1591 8219 6.151648 TCTCAATCCAGTTTATTCTGCAAAGG 59.848 38.462 0.00 0.00 34.47 3.11
1592 8220 6.009589 TCAATCCAGTTTATTCTGCAAAGGA 58.990 36.000 0.00 0.00 34.47 3.36
1593 8221 6.493115 TCAATCCAGTTTATTCTGCAAAGGAA 59.507 34.615 0.00 0.00 34.47 3.36
1594 8222 5.964958 TCCAGTTTATTCTGCAAAGGAAG 57.035 39.130 0.00 0.00 34.47 3.46
1595 8223 4.766891 TCCAGTTTATTCTGCAAAGGAAGG 59.233 41.667 0.00 0.00 34.47 3.46
1596 8224 4.766891 CCAGTTTATTCTGCAAAGGAAGGA 59.233 41.667 0.00 0.00 34.47 3.36
1597 8225 5.420104 CCAGTTTATTCTGCAAAGGAAGGAT 59.580 40.000 0.00 0.00 34.47 3.24
1598 8226 6.405176 CCAGTTTATTCTGCAAAGGAAGGATC 60.405 42.308 0.00 0.00 34.47 3.36
1599 8227 6.151648 CAGTTTATTCTGCAAAGGAAGGATCA 59.848 38.462 0.00 0.00 0.00 2.92
1600 8228 6.376581 AGTTTATTCTGCAAAGGAAGGATCAG 59.623 38.462 0.00 0.00 0.00 2.90
1601 8229 2.795231 TCTGCAAAGGAAGGATCAGG 57.205 50.000 0.00 0.00 0.00 3.86
1602 8230 2.269023 TCTGCAAAGGAAGGATCAGGA 58.731 47.619 0.00 0.00 0.00 3.86
1603 8231 2.848694 TCTGCAAAGGAAGGATCAGGAT 59.151 45.455 0.00 0.00 0.00 3.24
1604 8232 4.040047 TCTGCAAAGGAAGGATCAGGATA 58.960 43.478 0.00 0.00 0.00 2.59
1605 8233 4.662179 TCTGCAAAGGAAGGATCAGGATAT 59.338 41.667 0.00 0.00 0.00 1.63
1606 8234 5.133322 TCTGCAAAGGAAGGATCAGGATATT 59.867 40.000 0.00 0.00 0.00 1.28
1607 8235 5.135383 TGCAAAGGAAGGATCAGGATATTG 58.865 41.667 0.00 0.00 0.00 1.90
1608 8236 4.522022 GCAAAGGAAGGATCAGGATATTGG 59.478 45.833 0.00 0.00 0.00 3.16
1609 8237 5.699143 CAAAGGAAGGATCAGGATATTGGT 58.301 41.667 0.00 0.00 0.00 3.67
1610 8238 4.989875 AGGAAGGATCAGGATATTGGTG 57.010 45.455 0.00 0.00 0.00 4.17
1611 8239 4.570926 AGGAAGGATCAGGATATTGGTGA 58.429 43.478 0.00 0.00 0.00 4.02
1612 8240 4.977739 AGGAAGGATCAGGATATTGGTGAA 59.022 41.667 0.00 0.00 0.00 3.18
1613 8241 5.066593 GGAAGGATCAGGATATTGGTGAAC 58.933 45.833 0.00 0.00 0.00 3.18
1614 8242 5.163152 GGAAGGATCAGGATATTGGTGAACT 60.163 44.000 0.00 0.00 0.00 3.01
1615 8243 6.043243 GGAAGGATCAGGATATTGGTGAACTA 59.957 42.308 0.00 0.00 0.00 2.24
1616 8244 6.426646 AGGATCAGGATATTGGTGAACTAC 57.573 41.667 0.00 0.00 0.00 2.73
1617 8245 6.146760 AGGATCAGGATATTGGTGAACTACT 58.853 40.000 0.00 0.00 0.00 2.57
1618 8246 6.617371 AGGATCAGGATATTGGTGAACTACTT 59.383 38.462 0.00 0.00 0.00 2.24
1619 8247 7.789831 AGGATCAGGATATTGGTGAACTACTTA 59.210 37.037 0.00 0.00 0.00 2.24
1620 8248 8.091449 GGATCAGGATATTGGTGAACTACTTAG 58.909 40.741 0.00 0.00 0.00 2.18
1621 8249 6.817184 TCAGGATATTGGTGAACTACTTAGC 58.183 40.000 0.00 0.00 0.00 3.09
1622 8250 6.611642 TCAGGATATTGGTGAACTACTTAGCT 59.388 38.462 0.00 0.00 0.00 3.32
1623 8251 7.783119 TCAGGATATTGGTGAACTACTTAGCTA 59.217 37.037 0.00 0.00 0.00 3.32
1624 8252 8.085296 CAGGATATTGGTGAACTACTTAGCTAG 58.915 40.741 0.00 0.00 0.00 3.42
1625 8253 6.869388 GGATATTGGTGAACTACTTAGCTAGC 59.131 42.308 6.62 6.62 0.00 3.42
1626 8254 3.777465 TGGTGAACTACTTAGCTAGCG 57.223 47.619 9.55 0.00 0.00 4.26
1627 8255 2.426024 TGGTGAACTACTTAGCTAGCGG 59.574 50.000 9.55 6.47 0.00 5.52
1628 8256 2.426381 GGTGAACTACTTAGCTAGCGGT 59.574 50.000 9.55 12.07 0.00 5.68
1629 8257 3.488890 GGTGAACTACTTAGCTAGCGGTC 60.489 52.174 9.55 2.43 0.00 4.79
1630 8258 3.377798 GTGAACTACTTAGCTAGCGGTCT 59.622 47.826 9.55 0.00 0.00 3.85
1631 8259 4.574013 GTGAACTACTTAGCTAGCGGTCTA 59.426 45.833 9.55 0.00 0.00 2.59
1632 8260 4.815308 TGAACTACTTAGCTAGCGGTCTAG 59.185 45.833 9.55 9.60 44.03 2.43
1633 8261 4.420522 ACTACTTAGCTAGCGGTCTAGT 57.579 45.455 9.55 10.21 43.30 2.57
1634 8262 4.779696 ACTACTTAGCTAGCGGTCTAGTT 58.220 43.478 9.55 0.00 43.30 2.24
1635 8263 5.923204 ACTACTTAGCTAGCGGTCTAGTTA 58.077 41.667 9.55 0.00 43.30 2.24
1636 8264 6.352516 ACTACTTAGCTAGCGGTCTAGTTAA 58.647 40.000 9.55 11.84 42.47 2.01
1637 8265 6.825721 ACTACTTAGCTAGCGGTCTAGTTAAA 59.174 38.462 9.55 0.00 43.35 1.52
1638 8266 6.521151 ACTTAGCTAGCGGTCTAGTTAAAA 57.479 37.500 9.55 0.00 43.35 1.52
1639 8267 6.328714 ACTTAGCTAGCGGTCTAGTTAAAAC 58.671 40.000 9.55 0.00 43.35 2.43
1640 8268 6.152492 ACTTAGCTAGCGGTCTAGTTAAAACT 59.848 38.462 9.55 0.39 43.35 2.66
1641 8269 5.402997 AGCTAGCGGTCTAGTTAAAACTT 57.597 39.130 9.55 0.00 43.30 2.66
1642 8270 6.521151 AGCTAGCGGTCTAGTTAAAACTTA 57.479 37.500 9.55 0.00 43.30 2.24
1643 8271 6.928520 AGCTAGCGGTCTAGTTAAAACTTAA 58.071 36.000 9.55 0.00 43.30 1.85
1644 8272 7.381323 AGCTAGCGGTCTAGTTAAAACTTAAA 58.619 34.615 9.55 0.00 43.30 1.52
1645 8273 7.874528 AGCTAGCGGTCTAGTTAAAACTTAAAA 59.125 33.333 9.55 0.00 43.30 1.52
1646 8274 7.954248 GCTAGCGGTCTAGTTAAAACTTAAAAC 59.046 37.037 0.00 0.00 43.30 2.43
1647 8275 7.790823 AGCGGTCTAGTTAAAACTTAAAACA 57.209 32.000 0.00 0.00 40.37 2.83
1648 8276 8.387190 AGCGGTCTAGTTAAAACTTAAAACAT 57.613 30.769 0.00 0.00 40.37 2.71
1649 8277 8.287503 AGCGGTCTAGTTAAAACTTAAAACATG 58.712 33.333 0.00 0.00 40.37 3.21
1650 8278 8.071967 GCGGTCTAGTTAAAACTTAAAACATGT 58.928 33.333 0.00 0.00 40.37 3.21
1664 8292 9.677567 ACTTAAAACATGTAGTACATTGCTTTG 57.322 29.630 13.25 5.49 36.53 2.77
1665 8293 8.514136 TTAAAACATGTAGTACATTGCTTTGC 57.486 30.769 13.25 0.00 36.53 3.68
1666 8294 5.703978 AACATGTAGTACATTGCTTTGCA 57.296 34.783 13.25 0.00 36.53 4.08
1689 8317 6.128472 GCATTCTTCCAATTTAAACCAAGCTG 60.128 38.462 0.00 0.00 0.00 4.24
1699 8327 3.825143 AAACCAAGCTGTGAAGCATTT 57.175 38.095 0.00 0.00 37.25 2.32
1718 8347 5.392811 GCATTTCACCAAATCTTCCTCTGAG 60.393 44.000 0.00 0.00 28.97 3.35
1742 8371 3.092301 TCATCGTCCATCTGTTCACTCT 58.908 45.455 0.00 0.00 0.00 3.24
1749 8380 5.869344 CGTCCATCTGTTCACTCTAAATCAA 59.131 40.000 0.00 0.00 0.00 2.57
1750 8381 6.183360 CGTCCATCTGTTCACTCTAAATCAAC 60.183 42.308 0.00 0.00 0.00 3.18
1751 8382 6.092807 GTCCATCTGTTCACTCTAAATCAACC 59.907 42.308 0.00 0.00 0.00 3.77
1768 8399 5.689383 TCAACCTGTAAAGTGCATTCTTC 57.311 39.130 0.00 0.00 0.00 2.87
1769 8400 5.376625 TCAACCTGTAAAGTGCATTCTTCT 58.623 37.500 0.00 0.00 0.00 2.85
1770 8401 5.239306 TCAACCTGTAAAGTGCATTCTTCTG 59.761 40.000 0.00 0.00 0.00 3.02
1781 8412 4.390297 GTGCATTCTTCTGTTACTGTCTCC 59.610 45.833 0.00 0.00 0.00 3.71
1786 8417 7.255277 GCATTCTTCTGTTACTGTCTCCTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
1985 8616 4.572389 AGTCTTCAGTGTTGTGCTACTTTG 59.428 41.667 0.00 0.00 0.00 2.77
2006 8637 4.779696 TGTTGTGCTATGCCATCAAGATA 58.220 39.130 0.00 0.00 0.00 1.98
2095 8726 7.959175 CCTAGTTATAGGTGTGGCTAACATTA 58.041 38.462 0.00 0.00 43.33 1.90
2155 8786 9.667107 AACTTGATCGAATTTTAGGAATCAGTA 57.333 29.630 0.00 0.00 0.00 2.74
2224 8855 3.127548 CCATCTTGACATTTTGGACCTCG 59.872 47.826 0.00 0.00 0.00 4.63
2515 9146 5.053811 TCGCTTTAGTTGTCTTTCACATGA 58.946 37.500 0.00 0.00 33.90 3.07
2517 9148 6.871492 TCGCTTTAGTTGTCTTTCACATGATA 59.129 34.615 0.00 0.00 33.90 2.15
2652 9283 4.176271 TGAGTAGATTGATGTGCAGAACG 58.824 43.478 0.00 0.00 0.00 3.95
2660 9291 0.669318 ATGTGCAGAACGTACACGGG 60.669 55.000 6.72 0.00 43.47 5.28
2666 9297 1.217244 GAACGTACACGGGGAGCAT 59.783 57.895 6.72 0.00 44.95 3.79
2683 9422 6.097412 GGGGAGCATTTAATCTTCTTGTGAAT 59.903 38.462 0.00 0.00 0.00 2.57
2697 9436 7.550551 TCTTCTTGTGAATGATAGCTGTTTAGG 59.449 37.037 0.00 0.00 0.00 2.69
2715 9454 7.004086 TGTTTAGGTGATTCAATCAGGAGTTT 58.996 34.615 0.00 0.00 40.53 2.66
2719 9458 6.962182 AGGTGATTCAATCAGGAGTTTCATA 58.038 36.000 0.00 0.00 40.53 2.15
3119 9858 3.023119 TGAATGGGTTGCCATACATGTC 58.977 45.455 0.00 0.00 0.00 3.06
3143 9882 1.208052 TCTTCTGAGATTGCCTTCCGG 59.792 52.381 0.00 0.00 0.00 5.14
3156 9895 3.781760 TCCGGCAGGAAGTACGTT 58.218 55.556 1.89 0.00 45.12 3.99
3157 9896 1.290955 TCCGGCAGGAAGTACGTTG 59.709 57.895 1.89 0.00 45.12 4.10
3158 9897 1.005394 CCGGCAGGAAGTACGTTGT 60.005 57.895 0.00 0.00 41.02 3.32
3159 9898 0.244450 CCGGCAGGAAGTACGTTGTA 59.756 55.000 0.00 0.00 41.02 2.41
3160 9899 1.134907 CCGGCAGGAAGTACGTTGTAT 60.135 52.381 0.00 0.00 41.02 2.29
3161 9900 2.099592 CCGGCAGGAAGTACGTTGTATA 59.900 50.000 0.00 0.00 41.02 1.47
3162 9901 3.111098 CGGCAGGAAGTACGTTGTATAC 58.889 50.000 0.00 0.00 0.00 1.47
3163 9902 3.181493 CGGCAGGAAGTACGTTGTATACT 60.181 47.826 4.17 0.00 34.25 2.12
3164 9903 4.035558 CGGCAGGAAGTACGTTGTATACTA 59.964 45.833 4.17 0.00 32.47 1.82
3165 9904 5.517904 GGCAGGAAGTACGTTGTATACTAG 58.482 45.833 4.17 0.00 32.47 2.57
3166 9905 4.974888 GCAGGAAGTACGTTGTATACTAGC 59.025 45.833 4.17 0.00 32.47 3.42
3214 10041 7.439655 GCATGTCTTGTTTGGTACCAAATTTAA 59.560 33.333 36.07 28.10 45.90 1.52
3218 10045 6.931840 TCTTGTTTGGTACCAAATTTAATGCC 59.068 34.615 36.07 23.08 45.90 4.40
3267 10094 9.668497 AACCTTTCATCTTGTACTTATTAGACC 57.332 33.333 0.00 0.00 0.00 3.85
3268 10095 9.047947 ACCTTTCATCTTGTACTTATTAGACCT 57.952 33.333 0.00 0.00 0.00 3.85
3269 10096 9.892130 CCTTTCATCTTGTACTTATTAGACCTT 57.108 33.333 0.00 0.00 0.00 3.50
3316 10143 1.271108 TGTGGATGCTTACTTTCGGCA 60.271 47.619 0.00 0.00 40.32 5.69
3317 10144 1.398390 GTGGATGCTTACTTTCGGCAG 59.602 52.381 0.00 0.00 39.38 4.85
3318 10145 1.003118 TGGATGCTTACTTTCGGCAGT 59.997 47.619 0.00 0.00 39.38 4.40
3319 10146 1.666189 GGATGCTTACTTTCGGCAGTC 59.334 52.381 0.00 0.00 39.38 3.51
3320 10147 1.324736 GATGCTTACTTTCGGCAGTCG 59.675 52.381 0.00 0.00 39.38 4.18
3321 10148 0.669318 TGCTTACTTTCGGCAGTCGG 60.669 55.000 0.00 0.00 39.77 4.79
3322 10149 1.967597 GCTTACTTTCGGCAGTCGGC 61.968 60.000 0.00 0.00 43.74 5.54
3332 10159 3.568093 GCAGTCGGCACACAAATTT 57.432 47.368 0.00 0.00 43.97 1.82
3345 10172 5.183904 GCACACAAATTTGGGTTAGAGATCT 59.816 40.000 23.39 0.00 43.56 2.75
3635 10465 2.506438 CCCGGCTCGACTCGTTTC 60.506 66.667 0.00 0.00 0.00 2.78
3777 10626 2.455032 GACCGTCGATCTGTTCATCTG 58.545 52.381 0.00 0.00 0.00 2.90
3848 10697 1.372683 CATATGGGGCTCGTCTGGG 59.627 63.158 0.00 0.00 0.00 4.45
3851 10700 1.944896 TATGGGGCTCGTCTGGGAGA 61.945 60.000 0.00 0.00 36.08 3.71
3867 10716 4.575885 TGGGAGAAACTTATGCAGTGTAC 58.424 43.478 0.00 0.00 35.12 2.90
3871 10720 5.389516 GGAGAAACTTATGCAGTGTACAACG 60.390 44.000 0.00 0.00 35.12 4.10
3882 10731 2.073816 GTGTACAACGGATGGGTGAAG 58.926 52.381 0.00 0.00 0.00 3.02
3897 10746 3.421844 GGTGAAGGATAAACAGCACCTT 58.578 45.455 0.00 0.00 44.08 3.50
3919 10768 4.343231 TGCATGGGATTGTTGTATCTTGT 58.657 39.130 0.00 0.00 0.00 3.16
3920 10769 5.504853 TGCATGGGATTGTTGTATCTTGTA 58.495 37.500 0.00 0.00 0.00 2.41
3921 10770 5.356751 TGCATGGGATTGTTGTATCTTGTAC 59.643 40.000 0.00 0.00 0.00 2.90
3945 10794 2.471815 TGTGTATACCTGAGAGGGGG 57.528 55.000 0.00 0.00 40.58 5.40
4087 10936 4.388378 AAGCTTGATCGTACTACTTCCC 57.612 45.455 0.00 0.00 0.00 3.97
4099 10948 3.457836 ACTACTTCCCCCGTTCCTAAAT 58.542 45.455 0.00 0.00 0.00 1.40
4100 10949 4.623863 ACTACTTCCCCCGTTCCTAAATA 58.376 43.478 0.00 0.00 0.00 1.40
4101 10950 5.222086 ACTACTTCCCCCGTTCCTAAATAT 58.778 41.667 0.00 0.00 0.00 1.28
4102 10951 5.668991 ACTACTTCCCCCGTTCCTAAATATT 59.331 40.000 0.00 0.00 0.00 1.28
4103 10952 5.045012 ACTTCCCCCGTTCCTAAATATTC 57.955 43.478 0.00 0.00 0.00 1.75
4104 10953 4.141321 ACTTCCCCCGTTCCTAAATATTCC 60.141 45.833 0.00 0.00 0.00 3.01
4105 10954 2.712627 TCCCCCGTTCCTAAATATTCCC 59.287 50.000 0.00 0.00 0.00 3.97
4106 10955 2.714793 CCCCCGTTCCTAAATATTCCCT 59.285 50.000 0.00 0.00 0.00 4.20
4107 10956 3.244805 CCCCCGTTCCTAAATATTCCCTC 60.245 52.174 0.00 0.00 0.00 4.30
4108 10957 3.244805 CCCCGTTCCTAAATATTCCCTCC 60.245 52.174 0.00 0.00 0.00 4.30
4109 10958 3.556423 CCCGTTCCTAAATATTCCCTCCG 60.556 52.174 0.00 0.00 0.00 4.63
4110 10959 3.070590 CCGTTCCTAAATATTCCCTCCGT 59.929 47.826 0.00 0.00 0.00 4.69
4111 10960 4.304939 CGTTCCTAAATATTCCCTCCGTC 58.695 47.826 0.00 0.00 0.00 4.79
4112 10961 4.639334 GTTCCTAAATATTCCCTCCGTCC 58.361 47.826 0.00 0.00 0.00 4.79
4113 10962 2.895404 TCCTAAATATTCCCTCCGTCCG 59.105 50.000 0.00 0.00 0.00 4.79
4114 10963 2.028385 CCTAAATATTCCCTCCGTCCGG 60.028 54.545 0.00 0.00 0.00 5.14
4115 10964 1.797320 AAATATTCCCTCCGTCCGGA 58.203 50.000 0.00 0.00 42.90 5.14
4116 10965 1.797320 AATATTCCCTCCGTCCGGAA 58.203 50.000 5.23 0.00 44.66 4.30
4117 10966 1.797320 ATATTCCCTCCGTCCGGAAA 58.203 50.000 5.23 1.92 44.66 3.13
4118 10967 1.797320 TATTCCCTCCGTCCGGAAAT 58.203 50.000 5.23 9.21 44.66 2.17
4119 10968 1.797320 ATTCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
4120 10969 0.826062 TTCCCTCCGTCCGGAAATAC 59.174 55.000 5.23 0.00 44.66 1.89
4121 10970 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4122 10971 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4123 10972 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4124 10973 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4125 10974 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4126 10975 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4127 10976 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4128 10977 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4129 10978 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4130 10979 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4131 10980 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4132 10981 5.064707 CGTCCGGAAATACTTGTCATCAAAT 59.935 40.000 5.23 0.00 32.87 2.32
4133 10982 6.487103 GTCCGGAAATACTTGTCATCAAATC 58.513 40.000 5.23 0.00 32.87 2.17
4134 10983 6.093495 GTCCGGAAATACTTGTCATCAAATCA 59.907 38.462 5.23 0.00 32.87 2.57
4135 10984 6.657117 TCCGGAAATACTTGTCATCAAATCAA 59.343 34.615 0.00 0.00 32.87 2.57
4136 10985 7.175816 TCCGGAAATACTTGTCATCAAATCAAA 59.824 33.333 0.00 0.00 32.87 2.69
4137 10986 7.812191 CCGGAAATACTTGTCATCAAATCAAAA 59.188 33.333 0.00 0.00 32.87 2.44
4138 10987 9.357652 CGGAAATACTTGTCATCAAATCAAAAT 57.642 29.630 0.00 0.00 32.87 1.82
4150 10999 9.669887 TCATCAAATCAAAATGAATAAAAGGGG 57.330 29.630 0.00 0.00 0.00 4.79
4151 11000 9.669887 CATCAAATCAAAATGAATAAAAGGGGA 57.330 29.630 0.00 0.00 0.00 4.81
4153 11002 9.669887 TCAAATCAAAATGAATAAAAGGGGATG 57.330 29.630 0.00 0.00 0.00 3.51
4154 11003 9.452287 CAAATCAAAATGAATAAAAGGGGATGT 57.548 29.630 0.00 0.00 0.00 3.06
4158 11007 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
4164 11013 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
4172 11021 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
4194 11043 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
4195 11044 7.339482 AGTTCTAGATACATCCCTTTTTGTCC 58.661 38.462 0.00 0.00 0.00 4.02
4196 11045 6.884472 TCTAGATACATCCCTTTTTGTCCA 57.116 37.500 0.00 0.00 0.00 4.02
4197 11046 7.451731 TCTAGATACATCCCTTTTTGTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
4198 11047 7.872138 TCTAGATACATCCCTTTTTGTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
4199 11048 8.336235 TCTAGATACATCCCTTTTTGTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
4200 11049 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
4201 11050 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
4202 11051 5.885449 ACATCCCTTTTTGTCCATTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
4203 11052 6.438186 ACATCCCTTTTTGTCCATTTTGAT 57.562 33.333 0.00 0.00 0.00 2.57
4204 11053 6.232692 ACATCCCTTTTTGTCCATTTTGATG 58.767 36.000 0.00 0.00 33.80 3.07
4205 11054 6.043012 ACATCCCTTTTTGTCCATTTTGATGA 59.957 34.615 0.00 0.00 32.39 2.92
4206 11055 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
4207 11056 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
4208 11057 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
4209 11058 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
4210 11059 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
4211 11060 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
4212 11061 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
4213 11062 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
4214 11063 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
4215 11064 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
4216 11065 9.829507 TTGTCCATTTTGATGACAAGTATTTTT 57.170 25.926 0.00 0.00 37.32 1.94
4217 11066 9.258826 TGTCCATTTTGATGACAAGTATTTTTG 57.741 29.630 0.00 0.00 37.32 2.44
4218 11067 8.711457 GTCCATTTTGATGACAAGTATTTTTGG 58.289 33.333 0.00 0.00 37.32 3.28
4219 11068 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
4220 11069 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
4221 11070 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
4222 11071 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
4223 11072 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
4224 11073 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
4225 11074 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
4226 11075 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
4227 11076 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
4228 11077 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
4249 11098 8.000127 AGGGAGTATAAGTCTTCGTAGAGATTT 59.000 37.037 0.00 0.00 38.43 2.17
4261 11110 9.698309 TCTTCGTAGAGATTTGAATATGGAATC 57.302 33.333 0.00 0.00 38.43 2.52
4262 11111 8.833231 TTCGTAGAGATTTGAATATGGAATCC 57.167 34.615 0.00 0.00 38.43 3.01
4282 11131 3.443329 TCCATACGCAGCAAAATGAATGT 59.557 39.130 0.00 0.00 0.00 2.71
4287 11136 4.808558 ACGCAGCAAAATGAATGTATGTT 58.191 34.783 0.00 0.00 0.00 2.71
4288 11137 5.229423 ACGCAGCAAAATGAATGTATGTTT 58.771 33.333 0.00 0.00 0.00 2.83
4289 11138 6.385843 ACGCAGCAAAATGAATGTATGTTTA 58.614 32.000 0.00 0.00 0.00 2.01
4290 11139 7.035004 ACGCAGCAAAATGAATGTATGTTTAT 58.965 30.769 0.00 0.00 0.00 1.40
4291 11140 8.187480 ACGCAGCAAAATGAATGTATGTTTATA 58.813 29.630 0.00 0.00 0.00 0.98
4306 11171 9.361315 TGTATGTTTATATACATCCGTATGTGC 57.639 33.333 11.50 0.00 45.99 4.57
4437 11416 7.440856 GGAGCCTGAAACATTATTCTAGAAGAG 59.559 40.741 11.53 3.38 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 0.458370 GCGATCCAAACAACATGCCC 60.458 55.000 0.00 0.00 0.00 5.36
99 100 2.643551 CTAGGGCGATCCAAACAACAT 58.356 47.619 0.00 0.00 38.24 2.71
129 130 0.691078 TACCTCCAGTCAGATGGCCC 60.691 60.000 0.00 0.00 40.41 5.80
134 135 3.018149 GTCTCGTTACCTCCAGTCAGAT 58.982 50.000 0.00 0.00 0.00 2.90
135 136 2.434428 GTCTCGTTACCTCCAGTCAGA 58.566 52.381 0.00 0.00 0.00 3.27
176 177 4.794199 GCGTAGGGGCCTTATTCC 57.206 61.111 0.84 0.00 0.00 3.01
193 194 2.019951 CGTCGGAACAAGGACACGG 61.020 63.158 0.00 0.00 0.00 4.94
239 240 0.813821 GGCCCAGATCAAAGCTTCAC 59.186 55.000 0.00 0.00 0.00 3.18
241 242 1.101331 CTGGCCCAGATCAAAGCTTC 58.899 55.000 4.15 0.00 32.44 3.86
327 328 1.719780 GAAGCGAGTAGACCAAACACG 59.280 52.381 0.00 0.00 34.63 4.49
342 343 1.344942 CGTCCAACGGAGAAGAAGCG 61.345 60.000 0.00 0.00 38.08 4.68
361 362 5.382618 AAAGATGAAGTTGGTCATGCTTC 57.617 39.130 3.78 3.78 38.38 3.86
387 388 1.560146 GGCTTACCTGGCTAACTTCCT 59.440 52.381 0.00 0.00 0.00 3.36
393 394 2.587889 GGCGGCTTACCTGGCTAA 59.412 61.111 0.00 0.00 34.02 3.09
414 416 4.399219 TCCAGATAGGACCAGATAGAACG 58.601 47.826 0.00 0.00 43.07 3.95
471 473 3.054728 ACGGGGATCATATTGTTGTCACA 60.055 43.478 0.00 0.00 0.00 3.58
491 493 4.637534 AGAAGATTCATGTGGAATTGGACG 59.362 41.667 0.00 0.00 46.17 4.79
551 554 0.729690 GAGCGAGTCAGGAAAATGGC 59.270 55.000 0.00 0.00 0.00 4.40
591 594 1.531883 GCAAAATTCGATGCCGTCTCC 60.532 52.381 0.00 0.00 36.56 3.71
655 658 9.971922 AAAAAGTAATTGATCTTTCTTGGTGAG 57.028 29.630 0.00 0.00 33.53 3.51
738 747 5.807520 ACACAAGAGCATTTAGATCACTACG 59.192 40.000 0.00 0.00 34.30 3.51
912 7125 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
913 7126 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
914 7127 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
915 7128 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
916 7129 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
917 7130 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
918 7131 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
919 7132 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
920 7133 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
921 7134 1.824852 TCTCTCTGTGTGTGTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
922 7135 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
923 7136 2.360483 CTCTCTCTCTGTGTGTGTGTGT 59.640 50.000 0.00 0.00 0.00 3.72
924 7137 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
925 7138 2.884012 CTCTCTCTCTCTGTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
926 7139 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
927 7140 3.072330 TCTCTCTCTCTCTCTGTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
928 7141 3.673902 TCTCTCTCTCTCTCTGTGTGTG 58.326 50.000 0.00 0.00 0.00 3.82
929 7142 3.582647 TCTCTCTCTCTCTCTCTGTGTGT 59.417 47.826 0.00 0.00 0.00 3.72
930 7143 4.081476 TCTCTCTCTCTCTCTCTCTGTGTG 60.081 50.000 0.00 0.00 0.00 3.82
931 7144 4.096681 TCTCTCTCTCTCTCTCTCTGTGT 58.903 47.826 0.00 0.00 0.00 3.72
932 7145 4.403752 TCTCTCTCTCTCTCTCTCTCTGTG 59.596 50.000 0.00 0.00 0.00 3.66
933 7146 4.614475 TCTCTCTCTCTCTCTCTCTCTGT 58.386 47.826 0.00 0.00 0.00 3.41
934 7147 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
935 7148 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
936 7149 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
937 7150 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
938 7151 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
939 7152 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
940 7153 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
941 7154 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
942 7155 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
943 7156 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
944 7157 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
945 7158 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
946 7159 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
947 7160 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
948 7161 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
949 7162 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
950 7163 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
955 7168 5.255397 TGGTTTTCTCTCTCTCTCTCTCT 57.745 43.478 0.00 0.00 0.00 3.10
959 7172 4.396357 TCCTGGTTTTCTCTCTCTCTCT 57.604 45.455 0.00 0.00 0.00 3.10
976 7189 2.157738 CTTGCTTCCTGGTTCTTCCTG 58.842 52.381 0.00 0.00 37.07 3.86
977 7190 2.057922 TCTTGCTTCCTGGTTCTTCCT 58.942 47.619 0.00 0.00 37.07 3.36
978 7191 2.568623 TCTTGCTTCCTGGTTCTTCC 57.431 50.000 0.00 0.00 0.00 3.46
979 7192 3.744660 TCTTCTTGCTTCCTGGTTCTTC 58.255 45.455 0.00 0.00 0.00 2.87
980 7193 3.864789 TCTTCTTGCTTCCTGGTTCTT 57.135 42.857 0.00 0.00 0.00 2.52
981 7194 3.560882 CCATCTTCTTGCTTCCTGGTTCT 60.561 47.826 0.00 0.00 0.00 3.01
982 7195 2.751806 CCATCTTCTTGCTTCCTGGTTC 59.248 50.000 0.00 0.00 0.00 3.62
983 7196 2.556114 CCCATCTTCTTGCTTCCTGGTT 60.556 50.000 0.00 0.00 0.00 3.67
984 7197 1.005215 CCCATCTTCTTGCTTCCTGGT 59.995 52.381 0.00 0.00 0.00 4.00
985 7198 1.684248 CCCCATCTTCTTGCTTCCTGG 60.684 57.143 0.00 0.00 0.00 4.45
986 7199 1.760192 CCCCATCTTCTTGCTTCCTG 58.240 55.000 0.00 0.00 0.00 3.86
987 7200 0.033699 GCCCCATCTTCTTGCTTCCT 60.034 55.000 0.00 0.00 0.00 3.36
1062 7275 0.107361 GGGGGATCGTGGTTAGGTTG 60.107 60.000 0.00 0.00 0.00 3.77
1091 7304 2.964039 TGGATGGGGAGGGAGGGA 60.964 66.667 0.00 0.00 0.00 4.20
1092 7305 2.774351 GTGGATGGGGAGGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
1093 7306 2.774351 GGTGGATGGGGAGGGAGG 60.774 72.222 0.00 0.00 0.00 4.30
1094 7307 2.774351 GGGTGGATGGGGAGGGAG 60.774 72.222 0.00 0.00 0.00 4.30
1095 7308 4.448340 GGGGTGGATGGGGAGGGA 62.448 72.222 0.00 0.00 0.00 4.20
1096 7309 3.990141 AAGGGGTGGATGGGGAGGG 62.990 68.421 0.00 0.00 0.00 4.30
1097 7310 1.935931 AAAGGGGTGGATGGGGAGG 60.936 63.158 0.00 0.00 0.00 4.30
1098 7311 0.921256 AGAAAGGGGTGGATGGGGAG 60.921 60.000 0.00 0.00 0.00 4.30
1099 7312 0.919289 GAGAAAGGGGTGGATGGGGA 60.919 60.000 0.00 0.00 0.00 4.81
1100 7313 1.615262 GAGAAAGGGGTGGATGGGG 59.385 63.158 0.00 0.00 0.00 4.96
1101 7314 1.214305 TGGAGAAAGGGGTGGATGGG 61.214 60.000 0.00 0.00 0.00 4.00
1102 7315 0.929244 ATGGAGAAAGGGGTGGATGG 59.071 55.000 0.00 0.00 0.00 3.51
1117 7330 3.138128 TCGAGCGCCGAAGATGGA 61.138 61.111 16.76 0.00 45.43 3.41
1140 7677 1.082690 GAGAAAGCTCCAAGAAGCCG 58.917 55.000 0.00 0.00 43.56 5.52
1263 7800 2.401766 GGTCCAGATTGGCGCACTG 61.402 63.158 10.83 12.51 37.47 3.66
1287 7824 0.037975 GGACCGTCGTAAAAGCCAGA 60.038 55.000 0.00 0.00 0.00 3.86
1295 7832 2.182284 CGCCATGGACCGTCGTAA 59.818 61.111 18.40 0.00 0.00 3.18
1298 7835 4.873129 CCTCGCCATGGACCGTCG 62.873 72.222 18.40 9.35 0.00 5.12
1355 7892 1.372683 CACCACACTCCAGGTCCAG 59.627 63.158 0.00 0.00 35.52 3.86
1356 7893 0.105401 TACACCACACTCCAGGTCCA 60.105 55.000 0.00 0.00 35.52 4.02
1357 7894 1.066143 CATACACCACACTCCAGGTCC 60.066 57.143 0.00 0.00 35.52 4.46
1358 7895 1.623811 ACATACACCACACTCCAGGTC 59.376 52.381 0.00 0.00 35.52 3.85
1359 7896 1.729586 ACATACACCACACTCCAGGT 58.270 50.000 0.00 0.00 39.10 4.00
1360 7897 2.832129 AGTACATACACCACACTCCAGG 59.168 50.000 0.00 0.00 0.00 4.45
1361 7898 3.368427 CCAGTACATACACCACACTCCAG 60.368 52.174 0.00 0.00 0.00 3.86
1418 7957 1.602237 GAGAATCCCAACCTCGGCA 59.398 57.895 0.00 0.00 0.00 5.69
1450 7989 0.034863 TCAATTAACCGGACCTGCCC 60.035 55.000 9.46 0.00 0.00 5.36
1451 7990 1.339727 ACTCAATTAACCGGACCTGCC 60.340 52.381 9.46 0.00 0.00 4.85
1452 7991 1.737793 CACTCAATTAACCGGACCTGC 59.262 52.381 9.46 0.00 0.00 4.85
1461 8000 3.253188 TCACTTGGCAGCACTCAATTAAC 59.747 43.478 0.00 0.00 0.00 2.01
1467 8006 1.598962 GCTCACTTGGCAGCACTCA 60.599 57.895 0.00 0.00 35.56 3.41
1494 8033 2.354604 CCCAATTCCCAAACCATTTCGG 60.355 50.000 0.00 0.00 42.50 4.30
1510 8056 1.556911 CTGCTAGAGTGTCACCCCAAT 59.443 52.381 0.00 0.00 0.00 3.16
1511 8057 0.976641 CTGCTAGAGTGTCACCCCAA 59.023 55.000 0.00 0.00 0.00 4.12
1512 8058 0.178932 ACTGCTAGAGTGTCACCCCA 60.179 55.000 0.00 0.00 31.75 4.96
1513 8059 0.247736 CACTGCTAGAGTGTCACCCC 59.752 60.000 11.84 0.00 46.30 4.95
1514 8060 3.822607 CACTGCTAGAGTGTCACCC 57.177 57.895 11.84 0.00 46.30 4.61
1583 8211 2.795231 TCCTGATCCTTCCTTTGCAG 57.205 50.000 0.00 0.00 0.00 4.41
1588 8216 4.977739 TCACCAATATCCTGATCCTTCCTT 59.022 41.667 0.00 0.00 0.00 3.36
1589 8217 4.570926 TCACCAATATCCTGATCCTTCCT 58.429 43.478 0.00 0.00 0.00 3.36
1590 8218 4.982241 TCACCAATATCCTGATCCTTCC 57.018 45.455 0.00 0.00 0.00 3.46
1591 8219 5.934781 AGTTCACCAATATCCTGATCCTTC 58.065 41.667 0.00 0.00 0.00 3.46
1592 8220 5.983333 AGTTCACCAATATCCTGATCCTT 57.017 39.130 0.00 0.00 0.00 3.36
1593 8221 6.146760 AGTAGTTCACCAATATCCTGATCCT 58.853 40.000 0.00 0.00 0.00 3.24
1594 8222 6.426646 AGTAGTTCACCAATATCCTGATCC 57.573 41.667 0.00 0.00 0.00 3.36
1595 8223 7.600752 GCTAAGTAGTTCACCAATATCCTGATC 59.399 40.741 0.00 0.00 0.00 2.92
1596 8224 7.291182 AGCTAAGTAGTTCACCAATATCCTGAT 59.709 37.037 0.00 0.00 0.00 2.90
1597 8225 6.611642 AGCTAAGTAGTTCACCAATATCCTGA 59.388 38.462 0.00 0.00 0.00 3.86
1598 8226 6.821388 AGCTAAGTAGTTCACCAATATCCTG 58.179 40.000 0.00 0.00 0.00 3.86
1599 8227 7.256012 GCTAGCTAAGTAGTTCACCAATATCCT 60.256 40.741 7.70 0.00 0.00 3.24
1600 8228 6.869388 GCTAGCTAAGTAGTTCACCAATATCC 59.131 42.308 7.70 0.00 0.00 2.59
1601 8229 6.583050 CGCTAGCTAAGTAGTTCACCAATATC 59.417 42.308 13.93 0.00 0.00 1.63
1602 8230 6.448006 CGCTAGCTAAGTAGTTCACCAATAT 58.552 40.000 13.93 0.00 0.00 1.28
1603 8231 5.221185 CCGCTAGCTAAGTAGTTCACCAATA 60.221 44.000 13.93 0.00 0.00 1.90
1604 8232 4.441634 CCGCTAGCTAAGTAGTTCACCAAT 60.442 45.833 13.93 0.00 0.00 3.16
1605 8233 3.119245 CCGCTAGCTAAGTAGTTCACCAA 60.119 47.826 13.93 0.00 0.00 3.67
1606 8234 2.426024 CCGCTAGCTAAGTAGTTCACCA 59.574 50.000 13.93 0.00 0.00 4.17
1607 8235 2.426381 ACCGCTAGCTAAGTAGTTCACC 59.574 50.000 13.93 0.00 0.00 4.02
1608 8236 3.377798 AGACCGCTAGCTAAGTAGTTCAC 59.622 47.826 13.93 0.00 0.00 3.18
1609 8237 3.618351 AGACCGCTAGCTAAGTAGTTCA 58.382 45.455 13.93 0.00 0.00 3.18
1610 8238 4.815846 ACTAGACCGCTAGCTAAGTAGTTC 59.184 45.833 13.93 0.00 46.55 3.01
1611 8239 4.779696 ACTAGACCGCTAGCTAAGTAGTT 58.220 43.478 13.93 0.57 46.55 2.24
1612 8240 4.420522 ACTAGACCGCTAGCTAAGTAGT 57.579 45.455 13.93 11.28 46.55 2.73
1613 8241 6.857777 TTAACTAGACCGCTAGCTAAGTAG 57.142 41.667 13.93 10.68 46.55 2.57
1614 8242 7.337942 AGTTTTAACTAGACCGCTAGCTAAGTA 59.662 37.037 13.93 0.00 46.55 2.24
1615 8243 6.152492 AGTTTTAACTAGACCGCTAGCTAAGT 59.848 38.462 13.93 7.40 46.55 2.24
1616 8244 6.562518 AGTTTTAACTAGACCGCTAGCTAAG 58.437 40.000 13.93 3.90 46.55 2.18
1617 8245 6.521151 AGTTTTAACTAGACCGCTAGCTAA 57.479 37.500 13.93 0.00 46.55 3.09
1618 8246 6.521151 AAGTTTTAACTAGACCGCTAGCTA 57.479 37.500 13.93 0.00 46.55 3.32
1619 8247 5.402997 AAGTTTTAACTAGACCGCTAGCT 57.597 39.130 13.93 0.00 46.55 3.32
1620 8248 7.586714 TTTAAGTTTTAACTAGACCGCTAGC 57.413 36.000 4.06 4.06 46.55 3.42
1622 8250 8.885494 TGTTTTAAGTTTTAACTAGACCGCTA 57.115 30.769 0.00 0.00 38.57 4.26
1623 8251 7.790823 TGTTTTAAGTTTTAACTAGACCGCT 57.209 32.000 0.00 0.00 38.57 5.52
1624 8252 8.071967 ACATGTTTTAAGTTTTAACTAGACCGC 58.928 33.333 0.00 0.00 38.57 5.68
1638 8266 9.677567 CAAAGCAATGTACTACATGTTTTAAGT 57.322 29.630 2.30 3.67 37.97 2.24
1639 8267 8.638565 GCAAAGCAATGTACTACATGTTTTAAG 58.361 33.333 2.30 0.00 37.97 1.85
1640 8268 8.138074 TGCAAAGCAATGTACTACATGTTTTAA 58.862 29.630 2.30 0.00 37.97 1.52
1641 8269 7.652727 TGCAAAGCAATGTACTACATGTTTTA 58.347 30.769 2.30 0.00 37.97 1.52
1642 8270 6.511416 TGCAAAGCAATGTACTACATGTTTT 58.489 32.000 2.30 5.44 37.97 2.43
1643 8271 6.083098 TGCAAAGCAATGTACTACATGTTT 57.917 33.333 2.30 0.00 37.97 2.83
1644 8272 5.703978 TGCAAAGCAATGTACTACATGTT 57.296 34.783 2.30 0.00 37.97 2.71
1645 8273 5.902613 ATGCAAAGCAATGTACTACATGT 57.097 34.783 2.69 2.69 43.62 3.21
1646 8274 6.558009 AGAATGCAAAGCAATGTACTACATG 58.442 36.000 2.31 0.00 43.62 3.21
1647 8275 6.764308 AGAATGCAAAGCAATGTACTACAT 57.236 33.333 0.00 0.00 43.62 2.29
1648 8276 6.349280 GGAAGAATGCAAAGCAATGTACTACA 60.349 38.462 0.00 0.00 43.62 2.74
1649 8277 6.030228 GGAAGAATGCAAAGCAATGTACTAC 58.970 40.000 0.00 0.00 43.62 2.73
1650 8278 5.709631 TGGAAGAATGCAAAGCAATGTACTA 59.290 36.000 0.00 0.00 43.62 1.82
1651 8279 4.523943 TGGAAGAATGCAAAGCAATGTACT 59.476 37.500 0.00 0.00 43.62 2.73
1652 8280 4.808558 TGGAAGAATGCAAAGCAATGTAC 58.191 39.130 0.00 0.00 43.62 2.90
1653 8281 5.465532 TTGGAAGAATGCAAAGCAATGTA 57.534 34.783 0.00 0.00 43.62 2.29
1654 8282 4.339872 TTGGAAGAATGCAAAGCAATGT 57.660 36.364 0.00 0.00 43.62 2.71
1655 8283 5.873179 AATTGGAAGAATGCAAAGCAATG 57.127 34.783 0.00 0.00 43.62 2.82
1656 8284 7.982761 TTAAATTGGAAGAATGCAAAGCAAT 57.017 28.000 0.00 0.00 43.62 3.56
1657 8285 7.255070 GGTTTAAATTGGAAGAATGCAAAGCAA 60.255 33.333 0.00 0.00 43.62 3.91
1658 8286 6.204495 GGTTTAAATTGGAAGAATGCAAAGCA 59.796 34.615 0.00 0.00 40.47 3.91
1659 8287 6.204495 TGGTTTAAATTGGAAGAATGCAAAGC 59.796 34.615 0.00 0.00 40.47 3.51
1660 8288 7.727331 TGGTTTAAATTGGAAGAATGCAAAG 57.273 32.000 0.00 0.00 40.47 2.77
1661 8289 7.255070 GCTTGGTTTAAATTGGAAGAATGCAAA 60.255 33.333 0.00 0.00 40.47 3.68
1662 8290 6.204495 GCTTGGTTTAAATTGGAAGAATGCAA 59.796 34.615 0.00 0.00 41.38 4.08
1663 8291 5.700373 GCTTGGTTTAAATTGGAAGAATGCA 59.300 36.000 0.00 0.00 0.00 3.96
1664 8292 5.934043 AGCTTGGTTTAAATTGGAAGAATGC 59.066 36.000 0.00 0.00 0.00 3.56
1665 8293 6.930722 ACAGCTTGGTTTAAATTGGAAGAATG 59.069 34.615 0.00 0.00 0.00 2.67
1666 8294 6.930722 CACAGCTTGGTTTAAATTGGAAGAAT 59.069 34.615 0.00 0.00 0.00 2.40
1699 8327 5.721480 TGATACTCAGAGGAAGATTTGGTGA 59.279 40.000 1.53 0.00 0.00 4.02
1708 8336 3.885901 TGGACGATGATACTCAGAGGAAG 59.114 47.826 1.53 0.00 0.00 3.46
1718 8347 4.938080 AGTGAACAGATGGACGATGATAC 58.062 43.478 0.00 0.00 0.00 2.24
1742 8371 7.759489 AGAATGCACTTTACAGGTTGATTTA 57.241 32.000 0.00 0.00 0.00 1.40
1749 8380 4.718961 ACAGAAGAATGCACTTTACAGGT 58.281 39.130 0.00 0.00 0.00 4.00
1750 8381 5.695851 AACAGAAGAATGCACTTTACAGG 57.304 39.130 0.00 0.00 0.00 4.00
1751 8382 7.041780 ACAGTAACAGAAGAATGCACTTTACAG 60.042 37.037 0.00 0.00 0.00 2.74
1786 8417 8.635765 AAAGTTTATTCACCATTAGCAGAGAA 57.364 30.769 0.00 0.00 0.00 2.87
1936 8567 6.131544 ACAAGTGGACACATAAAAACAGAC 57.868 37.500 5.14 0.00 0.00 3.51
1985 8616 4.576053 TGTATCTTGATGGCATAGCACAAC 59.424 41.667 0.00 0.00 0.00 3.32
2063 8694 5.128991 GCCACACCTATAACTAGGAAACTCT 59.871 44.000 5.70 0.00 46.66 3.24
2163 8794 5.370880 ACAATCTAAGGTGATAAGCTCCCAT 59.629 40.000 0.00 0.00 0.00 4.00
2224 8855 0.813821 GAAGAAATGAGGGCAGCACC 59.186 55.000 0.00 0.00 37.93 5.01
2493 9124 5.342806 TCATGTGAAAGACAACTAAAGCG 57.657 39.130 0.00 0.00 38.36 4.68
2554 9185 2.037121 TCAAGAGATGCCACGACTTTCA 59.963 45.455 0.00 0.00 0.00 2.69
2555 9186 2.688507 TCAAGAGATGCCACGACTTTC 58.311 47.619 0.00 0.00 0.00 2.62
2561 9192 4.409570 CAGATTTTTCAAGAGATGCCACG 58.590 43.478 0.00 0.00 0.00 4.94
2652 9283 3.805207 AGATTAAATGCTCCCCGTGTAC 58.195 45.455 0.00 0.00 0.00 2.90
2660 9291 7.765307 TCATTCACAAGAAGATTAAATGCTCC 58.235 34.615 0.00 0.00 37.14 4.70
2666 9297 9.453572 ACAGCTATCATTCACAAGAAGATTAAA 57.546 29.630 0.00 0.00 37.14 1.52
2683 9422 7.337938 TGATTGAATCACCTAAACAGCTATCA 58.662 34.615 3.29 0.00 33.59 2.15
2691 9430 7.174946 TGAAACTCCTGATTGAATCACCTAAAC 59.825 37.037 3.29 0.00 35.06 2.01
2697 9436 8.044060 TGTTATGAAACTCCTGATTGAATCAC 57.956 34.615 3.29 0.00 36.51 3.06
2715 9454 7.340743 TCCAAGGAAAAGTTCAAACTGTTATGA 59.659 33.333 0.00 0.00 36.62 2.15
2719 9458 5.993748 TCCAAGGAAAAGTTCAAACTGTT 57.006 34.783 0.00 0.00 39.13 3.16
2776 9515 4.270808 CACCAAATCAAAAGCAGAAACACC 59.729 41.667 0.00 0.00 0.00 4.16
3119 9858 4.142730 CGGAAGGCAATCTCAGAAGAAAAG 60.143 45.833 0.00 0.00 34.49 2.27
3143 9882 4.974888 GCTAGTATACAACGTACTTCCTGC 59.025 45.833 5.50 0.00 34.43 4.85
3145 9884 6.764308 TTGCTAGTATACAACGTACTTCCT 57.236 37.500 5.50 0.00 34.43 3.36
3178 9917 0.893270 CAAGACATGCCGGTGGGAAA 60.893 55.000 1.90 0.00 34.06 3.13
3179 9918 1.303236 CAAGACATGCCGGTGGGAA 60.303 57.895 1.90 0.00 34.06 3.97
3180 9919 2.063015 AACAAGACATGCCGGTGGGA 62.063 55.000 1.90 0.00 34.06 4.37
3181 9920 1.178534 AAACAAGACATGCCGGTGGG 61.179 55.000 1.90 0.00 0.00 4.61
3187 9930 2.235016 TGGTACCAAACAAGACATGCC 58.765 47.619 13.60 0.00 0.00 4.40
3218 10045 7.855904 GGTTGTATTTTATTCTGTAGGCAATCG 59.144 37.037 0.00 0.00 0.00 3.34
3263 10090 9.877178 CACTAATAAGTACAAGATGAAAGGTCT 57.123 33.333 0.00 0.00 33.48 3.85
3264 10091 9.871238 TCACTAATAAGTACAAGATGAAAGGTC 57.129 33.333 0.00 0.00 33.48 3.85
3272 10099 9.998106 ACACTTGTTCACTAATAAGTACAAGAT 57.002 29.630 20.14 10.23 46.30 2.40
3273 10100 9.256477 CACACTTGTTCACTAATAAGTACAAGA 57.744 33.333 20.14 0.00 46.30 3.02
3275 10102 8.205512 TCCACACTTGTTCACTAATAAGTACAA 58.794 33.333 0.00 0.00 42.95 2.41
3276 10103 7.728148 TCCACACTTGTTCACTAATAAGTACA 58.272 34.615 0.00 0.00 42.95 2.90
3277 10104 8.656849 CATCCACACTTGTTCACTAATAAGTAC 58.343 37.037 0.80 0.00 42.95 2.73
3278 10105 7.333423 GCATCCACACTTGTTCACTAATAAGTA 59.667 37.037 0.80 0.00 42.95 2.24
3279 10106 6.149474 GCATCCACACTTGTTCACTAATAAGT 59.851 38.462 0.00 0.00 44.91 2.24
3280 10107 6.372659 AGCATCCACACTTGTTCACTAATAAG 59.627 38.462 0.00 0.00 39.14 1.73
3288 10115 4.085357 AGTAAGCATCCACACTTGTTCA 57.915 40.909 0.00 0.00 0.00 3.18
3316 10143 0.673437 CCCAAATTTGTGTGCCGACT 59.327 50.000 16.73 0.00 0.00 4.18
3317 10144 0.387565 ACCCAAATTTGTGTGCCGAC 59.612 50.000 16.73 0.00 0.00 4.79
3318 10145 1.115467 AACCCAAATTTGTGTGCCGA 58.885 45.000 16.73 0.00 0.00 5.54
3319 10146 2.294791 TCTAACCCAAATTTGTGTGCCG 59.705 45.455 16.73 4.57 0.00 5.69
3320 10147 3.572255 TCTCTAACCCAAATTTGTGTGCC 59.428 43.478 16.73 0.00 0.00 5.01
3321 10148 4.846779 TCTCTAACCCAAATTTGTGTGC 57.153 40.909 16.73 0.00 0.00 4.57
3322 10149 6.127897 GGAGATCTCTAACCCAAATTTGTGTG 60.128 42.308 21.81 7.59 0.00 3.82
3323 10150 5.946377 GGAGATCTCTAACCCAAATTTGTGT 59.054 40.000 21.81 8.97 0.00 3.72
3328 10155 7.070571 CAGTCTAGGAGATCTCTAACCCAAATT 59.929 40.741 21.81 0.00 0.00 1.82
3332 10159 4.727332 TCAGTCTAGGAGATCTCTAACCCA 59.273 45.833 21.81 0.00 0.00 4.51
3345 10172 5.208294 AGGGAAACATAGTCAGTCTAGGA 57.792 43.478 0.00 0.00 34.88 2.94
3622 10452 1.000145 GGGATTGAAACGAGTCGAGC 59.000 55.000 21.50 8.25 0.00 5.03
3661 10491 2.479566 TCAGGCTTGATCCAACAGTC 57.520 50.000 0.00 0.00 0.00 3.51
3670 10519 4.458295 CAGAACATCAGTTTCAGGCTTGAT 59.542 41.667 0.00 0.00 38.30 2.57
3757 10606 2.097629 TCAGATGAACAGATCGACGGTC 59.902 50.000 0.00 0.00 0.00 4.79
3777 10626 1.076485 ATGGGGGCATGCTCTTGTC 60.076 57.895 18.99 0.00 0.00 3.18
3848 10697 5.389516 CCGTTGTACACTGCATAAGTTTCTC 60.390 44.000 0.00 0.00 36.83 2.87
3851 10700 4.382291 TCCGTTGTACACTGCATAAGTTT 58.618 39.130 0.00 0.00 36.83 2.66
3867 10716 3.275617 TTATCCTTCACCCATCCGTTG 57.724 47.619 0.00 0.00 0.00 4.10
3871 10720 2.952310 GCTGTTTATCCTTCACCCATCC 59.048 50.000 0.00 0.00 0.00 3.51
3882 10731 2.159198 CCATGCAAGGTGCTGTTTATCC 60.159 50.000 0.00 0.00 45.31 2.59
3897 10746 4.343231 ACAAGATACAACAATCCCATGCA 58.657 39.130 0.00 0.00 0.00 3.96
3919 10768 6.781014 CCCCTCTCAGGTATACACAAATAGTA 59.219 42.308 5.01 0.00 31.93 1.82
3920 10769 5.602978 CCCCTCTCAGGTATACACAAATAGT 59.397 44.000 5.01 0.00 31.93 2.12
3921 10770 5.012148 CCCCCTCTCAGGTATACACAAATAG 59.988 48.000 5.01 0.00 31.93 1.73
4087 10936 3.556423 CGGAGGGAATATTTAGGAACGGG 60.556 52.174 0.00 0.00 0.00 5.28
4099 10948 1.797320 ATTTCCGGACGGAGGGAATA 58.203 50.000 13.64 0.00 46.06 1.75
4100 10949 1.415289 GTATTTCCGGACGGAGGGAAT 59.585 52.381 13.64 12.81 46.06 3.01
4101 10950 0.826062 GTATTTCCGGACGGAGGGAA 59.174 55.000 13.64 6.20 46.06 3.97
4102 10951 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4103 10952 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4104 10953 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4105 10954 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4106 10955 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4107 10956 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4108 10957 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4109 10958 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4110 10959 6.176896 TGATTTGATGACAAGTATTTCCGGA 58.823 36.000 0.00 0.00 37.32 5.14
4111 10960 6.435430 TGATTTGATGACAAGTATTTCCGG 57.565 37.500 0.00 0.00 37.32 5.14
4112 10961 8.741101 TTTTGATTTGATGACAAGTATTTCCG 57.259 30.769 0.00 0.00 37.32 4.30
4124 10973 9.669887 CCCCTTTTATTCATTTTGATTTGATGA 57.330 29.630 0.00 0.00 0.00 2.92
4125 10974 9.669887 TCCCCTTTTATTCATTTTGATTTGATG 57.330 29.630 0.00 0.00 0.00 3.07
4127 10976 9.669887 CATCCCCTTTTATTCATTTTGATTTGA 57.330 29.630 0.00 0.00 0.00 2.69
4128 10977 9.452287 ACATCCCCTTTTATTCATTTTGATTTG 57.548 29.630 0.00 0.00 0.00 2.32
4132 10981 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
4138 10987 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
4146 10995 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
4168 11017 9.886132 GACAAAAAGGGATGTATCTAGAACTAA 57.114 33.333 0.00 0.00 0.00 2.24
4169 11018 8.483758 GGACAAAAAGGGATGTATCTAGAACTA 58.516 37.037 0.00 0.00 0.00 2.24
4170 11019 7.037586 TGGACAAAAAGGGATGTATCTAGAACT 60.038 37.037 0.00 0.00 0.00 3.01
4171 11020 7.110155 TGGACAAAAAGGGATGTATCTAGAAC 58.890 38.462 0.00 0.00 0.00 3.01
4172 11021 7.265599 TGGACAAAAAGGGATGTATCTAGAA 57.734 36.000 0.00 0.00 0.00 2.10
4173 11022 6.884472 TGGACAAAAAGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
4174 11023 8.525290 AAATGGACAAAAAGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
4175 11024 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
4176 11025 7.454380 TCAAAATGGACAAAAAGGGATGTATCT 59.546 33.333 0.00 0.00 0.00 1.98
4177 11026 7.610865 TCAAAATGGACAAAAAGGGATGTATC 58.389 34.615 0.00 0.00 0.00 2.24
4178 11027 7.552050 TCAAAATGGACAAAAAGGGATGTAT 57.448 32.000 0.00 0.00 0.00 2.29
4179 11028 6.985653 TCAAAATGGACAAAAAGGGATGTA 57.014 33.333 0.00 0.00 0.00 2.29
4180 11029 5.885449 TCAAAATGGACAAAAAGGGATGT 57.115 34.783 0.00 0.00 0.00 3.06
4181 11030 6.369615 GTCATCAAAATGGACAAAAAGGGATG 59.630 38.462 0.00 0.00 33.42 3.51
4182 11031 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
4183 11032 5.365025 TGTCATCAAAATGGACAAAAAGGGA 59.635 36.000 0.00 0.00 33.42 4.20
4184 11033 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
4185 11034 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
4186 11035 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
4187 11036 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
4188 11037 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
4189 11038 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
4190 11039 9.829507 AAAAATACTTGTCATCAAAATGGACAA 57.170 25.926 0.00 0.00 34.59 3.18
4191 11040 9.258826 CAAAAATACTTGTCATCAAAATGGACA 57.741 29.630 0.00 0.00 33.42 4.02
4192 11041 8.711457 CCAAAAATACTTGTCATCAAAATGGAC 58.289 33.333 0.00 0.00 33.42 4.02
4193 11042 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
4194 11043 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
4195 11044 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
4196 11045 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
4197 11046 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
4198 11047 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
4199 11048 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
4200 11049 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
4201 11050 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
4202 11051 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
4203 11052 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
4204 11053 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
4205 11054 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
4206 11055 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
4207 11056 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
4208 11057 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
4209 11058 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
4210 11059 6.384886 ACTTATACTCCCTCCGTCCAAAAATA 59.615 38.462 0.00 0.00 0.00 1.40
4211 11060 5.191124 ACTTATACTCCCTCCGTCCAAAAAT 59.809 40.000 0.00 0.00 0.00 1.82
4212 11061 4.533311 ACTTATACTCCCTCCGTCCAAAAA 59.467 41.667 0.00 0.00 0.00 1.94
4213 11062 4.098894 ACTTATACTCCCTCCGTCCAAAA 58.901 43.478 0.00 0.00 0.00 2.44
4214 11063 3.703052 GACTTATACTCCCTCCGTCCAAA 59.297 47.826 0.00 0.00 0.00 3.28
4215 11064 3.053095 AGACTTATACTCCCTCCGTCCAA 60.053 47.826 0.00 0.00 0.00 3.53
4216 11065 2.512896 AGACTTATACTCCCTCCGTCCA 59.487 50.000 0.00 0.00 0.00 4.02
4217 11066 3.226682 AGACTTATACTCCCTCCGTCC 57.773 52.381 0.00 0.00 0.00 4.79
4218 11067 3.250521 CGAAGACTTATACTCCCTCCGTC 59.749 52.174 0.00 0.00 0.00 4.79
4219 11068 3.212685 CGAAGACTTATACTCCCTCCGT 58.787 50.000 0.00 0.00 0.00 4.69
4220 11069 3.212685 ACGAAGACTTATACTCCCTCCG 58.787 50.000 0.00 0.00 0.00 4.63
4221 11070 5.619220 TCTACGAAGACTTATACTCCCTCC 58.381 45.833 0.00 0.00 0.00 4.30
4222 11071 6.523840 TCTCTACGAAGACTTATACTCCCTC 58.476 44.000 0.00 0.00 0.00 4.30
4223 11072 6.497624 TCTCTACGAAGACTTATACTCCCT 57.502 41.667 0.00 0.00 0.00 4.20
4224 11073 7.748691 AATCTCTACGAAGACTTATACTCCC 57.251 40.000 0.00 0.00 0.00 4.30
4225 11074 8.838365 TCAAATCTCTACGAAGACTTATACTCC 58.162 37.037 0.00 0.00 0.00 3.85
4249 11098 4.002982 GCTGCGTATGGATTCCATATTCA 58.997 43.478 24.65 21.79 46.48 2.57
4261 11110 3.772932 ACATTCATTTTGCTGCGTATGG 58.227 40.909 0.00 0.00 0.00 2.74
4262 11111 5.972973 ACATACATTCATTTTGCTGCGTATG 59.027 36.000 13.32 13.32 40.33 2.39
4282 11131 9.797556 GAGCACATACGGATGTATATAAACATA 57.202 33.333 14.23 0.00 44.82 2.29
4290 11139 9.403583 TCAATATAGAGCACATACGGATGTATA 57.596 33.333 14.23 7.78 44.82 1.47
4291 11140 8.293699 TCAATATAGAGCACATACGGATGTAT 57.706 34.615 14.23 5.02 44.82 2.29
4408 11387 4.530875 AGAATAATGTTTCAGGCTCCTGG 58.469 43.478 15.32 0.00 43.75 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.