Multiple sequence alignment - TraesCS6B01G114800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G114800 chr6B 100.000 5276 0 0 1 5276 98852332 98857607 0.000000e+00 9744.0
1 TraesCS6B01G114800 chr6B 82.177 634 78 21 2566 3177 699802445 699803065 3.640000e-141 512.0
2 TraesCS6B01G114800 chr6B 97.571 247 6 0 1961 2207 523343878 523343632 1.760000e-114 424.0
3 TraesCS6B01G114800 chr6B 92.424 132 8 2 2614 2744 214036702 214036572 2.510000e-43 187.0
4 TraesCS6B01G114800 chr6B 93.220 59 4 0 2892 2950 214031929 214031871 2.620000e-13 87.9
5 TraesCS6B01G114800 chr6A 94.067 2781 103 19 2201 4960 55548313 55551052 0.000000e+00 4165.0
6 TraesCS6B01G114800 chr6A 95.812 1982 53 7 1 1963 55546344 55548314 0.000000e+00 3173.0
7 TraesCS6B01G114800 chr6A 91.049 324 23 4 4958 5276 55551107 55551429 2.920000e-117 433.0
8 TraesCS6B01G114800 chrUn 95.754 2167 52 20 2201 4361 21201894 21199762 0.000000e+00 3456.0
9 TraesCS6B01G114800 chrUn 95.136 1254 36 9 725 1963 21203136 21201893 0.000000e+00 1954.0
10 TraesCS6B01G114800 chrUn 88.152 920 52 17 4396 5276 21199762 21198861 0.000000e+00 1042.0
11 TraesCS6B01G114800 chrUn 90.187 214 15 3 531 738 21204062 21203849 1.870000e-69 274.0
12 TraesCS6B01G114800 chr1B 89.147 387 28 6 2566 2950 532673515 532673141 2.220000e-128 470.0
13 TraesCS6B01G114800 chr1B 93.141 277 13 3 18 289 252972453 252972728 8.230000e-108 401.0
14 TraesCS6B01G114800 chr1B 96.266 241 9 0 1962 2202 520524732 520524972 3.830000e-106 396.0
15 TraesCS6B01G114800 chr1B 97.368 38 1 0 2570 2607 68950343 68950380 1.230000e-06 65.8
16 TraesCS6B01G114800 chr4B 83.009 565 37 28 18 525 22847759 22848321 1.730000e-124 457.0
17 TraesCS6B01G114800 chr4B 89.431 123 11 2 5111 5231 650932627 650932505 2.540000e-33 154.0
18 TraesCS6B01G114800 chr4B 92.453 106 7 1 5106 5210 660670355 660670250 3.290000e-32 150.0
19 TraesCS6B01G114800 chr4B 84.277 159 18 6 5111 5266 660539704 660539858 1.180000e-31 148.0
20 TraesCS6B01G114800 chr2B 94.539 293 12 1 1 289 113282433 113282725 2.900000e-122 449.0
21 TraesCS6B01G114800 chr2B 95.902 244 9 1 1962 2205 399350682 399350440 1.380000e-105 394.0
22 TraesCS6B01G114800 chr2B 92.350 183 11 2 343 525 113283102 113283281 1.890000e-64 257.0
23 TraesCS6B01G114800 chr2B 85.802 162 21 1 542 701 532082973 532082812 2.530000e-38 171.0
24 TraesCS6B01G114800 chr2B 80.233 86 11 4 4669 4754 53417971 53418050 5.710000e-05 60.2
25 TraesCS6B01G114800 chr3A 82.332 566 42 28 16 525 79447148 79446585 6.270000e-119 438.0
26 TraesCS6B01G114800 chr3A 86.216 370 21 14 16 357 264030915 264030548 1.790000e-99 374.0
27 TraesCS6B01G114800 chr3A 86.134 238 30 3 2937 3172 12476176 12475940 2.440000e-63 254.0
28 TraesCS6B01G114800 chr3A 90.206 194 12 6 343 532 264030533 264030343 4.080000e-61 246.0
29 TraesCS6B01G114800 chr2A 97.541 244 5 1 1960 2202 362445893 362446136 2.940000e-112 416.0
30 TraesCS6B01G114800 chr2A 88.199 161 18 1 542 701 597511357 597511517 1.940000e-44 191.0
31 TraesCS6B01G114800 chr7D 96.063 254 9 1 1961 2213 31061841 31062094 3.800000e-111 412.0
32 TraesCS6B01G114800 chr7A 96.708 243 8 0 1960 2202 631367661 631367419 6.360000e-109 405.0
33 TraesCS6B01G114800 chr1D 96.281 242 9 0 1961 2202 27881890 27881649 1.060000e-106 398.0
34 TraesCS6B01G114800 chr3B 81.172 563 45 30 17 525 114103754 114104309 3.830000e-106 396.0
35 TraesCS6B01G114800 chr3B 90.426 282 19 3 16 289 299138554 299138835 1.080000e-96 364.0
36 TraesCS6B01G114800 chr3B 90.576 191 14 4 343 531 299138941 299139129 3.150000e-62 250.0
37 TraesCS6B01G114800 chr3B 86.014 143 15 4 5112 5252 757926120 757926259 1.180000e-31 148.0
38 TraesCS6B01G114800 chr4D 95.902 244 9 1 1958 2200 26895772 26896015 1.380000e-105 394.0
39 TraesCS6B01G114800 chr4D 92.593 189 9 5 343 529 10977998 10977813 3.130000e-67 267.0
40 TraesCS6B01G114800 chr4D 83.117 154 16 4 2566 2718 7644591 7644447 1.190000e-26 132.0
41 TraesCS6B01G114800 chr2D 95.885 243 10 0 1960 2202 295166401 295166643 1.380000e-105 394.0
42 TraesCS6B01G114800 chr2D 82.046 518 31 24 16 472 78382890 78383406 8.290000e-103 385.0
43 TraesCS6B01G114800 chr2D 92.391 184 12 2 343 525 263506782 263506964 1.460000e-65 261.0
44 TraesCS6B01G114800 chr2D 87.037 162 19 1 542 701 451961798 451961637 1.170000e-41 182.0
45 TraesCS6B01G114800 chr3D 92.115 279 17 2 16 289 225858597 225858319 6.410000e-104 388.0
46 TraesCS6B01G114800 chr3D 88.525 183 17 2 343 525 67720181 67720003 8.900000e-53 219.0
47 TraesCS6B01G114800 chr3D 85.417 144 16 4 5111 5252 570807091 570807231 1.530000e-30 145.0
48 TraesCS6B01G114800 chr3D 100.000 29 0 0 4727 4755 523660029 523660057 3.000000e-03 54.7
49 TraesCS6B01G114800 chr7B 82.181 376 50 13 2814 3179 677241766 677242134 1.850000e-79 307.0
50 TraesCS6B01G114800 chr7B 87.500 136 15 2 2566 2700 677241384 677241518 7.070000e-34 156.0
51 TraesCS6B01G114800 chr5A 94.340 106 5 1 5111 5216 688958379 688958275 1.520000e-35 161.0
52 TraesCS6B01G114800 chr6D 91.743 109 8 1 5103 5210 34401791 34401683 3.290000e-32 150.0
53 TraesCS6B01G114800 chr4A 82.353 153 15 6 2566 2716 595988364 595988506 7.180000e-24 122.0
54 TraesCS6B01G114800 chr5D 80.000 155 25 6 543 693 534614744 534614592 5.590000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G114800 chr6B 98852332 98857607 5275 False 9744.000000 9744 100.000000 1 5276 1 chr6B.!!$F1 5275
1 TraesCS6B01G114800 chr6B 699802445 699803065 620 False 512.000000 512 82.177000 2566 3177 1 chr6B.!!$F2 611
2 TraesCS6B01G114800 chr6A 55546344 55551429 5085 False 2590.333333 4165 93.642667 1 5276 3 chr6A.!!$F1 5275
3 TraesCS6B01G114800 chrUn 21198861 21204062 5201 True 1681.500000 3456 92.307250 531 5276 4 chrUn.!!$R1 4745
4 TraesCS6B01G114800 chr4B 22847759 22848321 562 False 457.000000 457 83.009000 18 525 1 chr4B.!!$F1 507
5 TraesCS6B01G114800 chr2B 113282433 113283281 848 False 353.000000 449 93.444500 1 525 2 chr2B.!!$F2 524
6 TraesCS6B01G114800 chr3A 79446585 79447148 563 True 438.000000 438 82.332000 16 525 1 chr3A.!!$R2 509
7 TraesCS6B01G114800 chr3A 264030343 264030915 572 True 310.000000 374 88.211000 16 532 2 chr3A.!!$R3 516
8 TraesCS6B01G114800 chr3B 114103754 114104309 555 False 396.000000 396 81.172000 17 525 1 chr3B.!!$F1 508
9 TraesCS6B01G114800 chr3B 299138554 299139129 575 False 307.000000 364 90.501000 16 531 2 chr3B.!!$F3 515
10 TraesCS6B01G114800 chr2D 78382890 78383406 516 False 385.000000 385 82.046000 16 472 1 chr2D.!!$F1 456
11 TraesCS6B01G114800 chr7B 677241384 677242134 750 False 231.500000 307 84.840500 2566 3179 2 chr7B.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 869 0.675522 CCCCGTGTCCGTGCTATTTT 60.676 55.0 0.00 0.0 0.00 1.82 F
2004 3103 0.178068 TGCTTCCTCTATTCCCGTGC 59.822 55.0 0.00 0.0 0.00 5.34 F
2188 3287 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.0 8.62 0.0 41.49 3.28 F
2564 3665 0.104120 GGGTGTGTTTGGTTTGAGGC 59.896 55.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 3268 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13 R
3579 4870 0.833409 TGAACCTGCAGAGCTCCTCA 60.833 55.000 17.39 7.73 32.06 3.86 R
4173 5464 1.522092 GTGGATGATGAGCCCGTCA 59.478 57.895 0.00 0.00 42.03 4.35 R
4401 5705 0.034896 ACAAACGACCGAAGAGGCAT 59.965 50.000 0.00 0.00 46.52 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.190738 AAGGTTGCTACTGCCGCCA 62.191 57.895 0.00 0.00 38.71 5.69
112 117 0.680061 GACGACAAGAAGGACCAGGT 59.320 55.000 0.00 0.00 0.00 4.00
124 130 1.344087 GGACCAGGTGGGGAGAAGATA 60.344 57.143 0.00 0.00 42.91 1.98
225 239 3.368948 GCTGGAGGAAACGAGAAGAGAAT 60.369 47.826 0.00 0.00 0.00 2.40
277 291 6.289482 TCAGGAACTAGACCTTATATGGGA 57.711 41.667 9.34 2.16 36.02 4.37
453 795 1.594331 GTATCCCCGAATGGCTGTTC 58.406 55.000 0.00 0.00 0.00 3.18
502 847 3.490249 CGTATGCGTATCCCTGTCTTTCA 60.490 47.826 0.00 0.00 0.00 2.69
520 865 3.376078 GTCCCCGTGTCCGTGCTA 61.376 66.667 0.00 0.00 0.00 3.49
524 869 0.675522 CCCCGTGTCCGTGCTATTTT 60.676 55.000 0.00 0.00 0.00 1.82
525 870 1.161843 CCCGTGTCCGTGCTATTTTT 58.838 50.000 0.00 0.00 0.00 1.94
718 1207 4.288626 TGGCCTAACTGGTTCTCACTTTAT 59.711 41.667 3.32 0.00 38.35 1.40
727 1216 7.736893 ACTGGTTCTCACTTTATGTTAACTCT 58.263 34.615 7.22 0.00 0.00 3.24
789 1866 6.807230 CCTCTTGATTTTCTGCTTGAATTCTG 59.193 38.462 7.05 1.00 34.24 3.02
790 1867 7.281040 TCTTGATTTTCTGCTTGAATTCTGT 57.719 32.000 7.05 0.00 34.24 3.41
931 2008 7.654568 TGGAATTTAATAATGCAGCTGATCAG 58.345 34.615 20.43 18.84 0.00 2.90
938 2015 3.579534 ATGCAGCTGATCAGAAGGAAT 57.420 42.857 27.04 11.16 0.00 3.01
997 2074 6.250104 GCTTATCAATGTGAAAGAAGCTTTCG 59.750 38.462 0.00 1.83 37.52 3.46
1005 2082 1.251251 AAGAAGCTTTCGCAATGGCT 58.749 45.000 0.00 0.00 39.10 4.75
1038 2115 3.059325 GCATTGTGAGTGTGACTGAAGTC 60.059 47.826 3.41 3.41 44.97 3.01
1247 2324 1.593006 GGTATGTGTACTGATGCGTGC 59.407 52.381 0.00 0.00 0.00 5.34
1444 2535 6.909550 TTGCCTTTTGATGTAAGGTGTAAT 57.090 33.333 0.00 0.00 43.34 1.89
1445 2536 6.909550 TGCCTTTTGATGTAAGGTGTAATT 57.090 33.333 0.00 0.00 43.34 1.40
1446 2537 6.686630 TGCCTTTTGATGTAAGGTGTAATTG 58.313 36.000 0.00 0.00 43.34 2.32
1447 2538 6.266558 TGCCTTTTGATGTAAGGTGTAATTGT 59.733 34.615 0.00 0.00 43.34 2.71
1448 2539 7.448777 TGCCTTTTGATGTAAGGTGTAATTGTA 59.551 33.333 0.00 0.00 43.34 2.41
1449 2540 8.466798 GCCTTTTGATGTAAGGTGTAATTGTAT 58.533 33.333 0.00 0.00 43.34 2.29
1695 2793 7.940137 TGGTAAAGTCTACTTATTCTTTTGCCA 59.060 33.333 0.00 0.75 34.61 4.92
1731 2830 8.961634 CCCTTGATCGTTCTATTCTGATCTATA 58.038 37.037 0.00 0.00 38.40 1.31
1914 3013 9.950680 GAATTGTTGATCTTCAAAGTAACTTCA 57.049 29.630 7.09 0.00 38.22 3.02
1969 3068 4.359434 GGAAGAATCCCAATACTCCCTC 57.641 50.000 0.00 0.00 40.10 4.30
1970 3069 3.073209 GGAAGAATCCCAATACTCCCTCC 59.927 52.174 0.00 0.00 40.10 4.30
1971 3070 2.330216 AGAATCCCAATACTCCCTCCG 58.670 52.381 0.00 0.00 0.00 4.63
1972 3071 2.047830 GAATCCCAATACTCCCTCCGT 58.952 52.381 0.00 0.00 0.00 4.69
1973 3072 2.191981 ATCCCAATACTCCCTCCGTT 57.808 50.000 0.00 0.00 0.00 4.44
1974 3073 1.492764 TCCCAATACTCCCTCCGTTC 58.507 55.000 0.00 0.00 0.00 3.95
1975 3074 0.468648 CCCAATACTCCCTCCGTTCC 59.531 60.000 0.00 0.00 0.00 3.62
1976 3075 1.200519 CCAATACTCCCTCCGTTCCA 58.799 55.000 0.00 0.00 0.00 3.53
1977 3076 1.557832 CCAATACTCCCTCCGTTCCAA 59.442 52.381 0.00 0.00 0.00 3.53
1978 3077 2.026636 CCAATACTCCCTCCGTTCCAAA 60.027 50.000 0.00 0.00 0.00 3.28
1979 3078 3.560453 CCAATACTCCCTCCGTTCCAAAA 60.560 47.826 0.00 0.00 0.00 2.44
1980 3079 4.270008 CAATACTCCCTCCGTTCCAAAAT 58.730 43.478 0.00 0.00 0.00 1.82
1981 3080 5.433526 CAATACTCCCTCCGTTCCAAAATA 58.566 41.667 0.00 0.00 0.00 1.40
1982 3081 5.906772 ATACTCCCTCCGTTCCAAAATAT 57.093 39.130 0.00 0.00 0.00 1.28
1983 3082 7.221450 CAATACTCCCTCCGTTCCAAAATATA 58.779 38.462 0.00 0.00 0.00 0.86
1984 3083 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
1985 3084 4.720273 ACTCCCTCCGTTCCAAAATATAGT 59.280 41.667 0.00 0.00 0.00 2.12
1986 3085 5.031066 TCCCTCCGTTCCAAAATATAGTG 57.969 43.478 0.00 0.00 0.00 2.74
1987 3086 3.564225 CCCTCCGTTCCAAAATATAGTGC 59.436 47.826 0.00 0.00 0.00 4.40
1988 3087 4.451900 CCTCCGTTCCAAAATATAGTGCT 58.548 43.478 0.00 0.00 0.00 4.40
1989 3088 4.881850 CCTCCGTTCCAAAATATAGTGCTT 59.118 41.667 0.00 0.00 0.00 3.91
1990 3089 5.007724 CCTCCGTTCCAAAATATAGTGCTTC 59.992 44.000 0.00 0.00 0.00 3.86
1991 3090 4.879545 TCCGTTCCAAAATATAGTGCTTCC 59.120 41.667 0.00 0.00 0.00 3.46
1992 3091 4.881850 CCGTTCCAAAATATAGTGCTTCCT 59.118 41.667 0.00 0.00 0.00 3.36
1993 3092 5.007724 CCGTTCCAAAATATAGTGCTTCCTC 59.992 44.000 0.00 0.00 0.00 3.71
1994 3093 5.817816 CGTTCCAAAATATAGTGCTTCCTCT 59.182 40.000 0.00 0.00 0.00 3.69
1995 3094 6.984474 CGTTCCAAAATATAGTGCTTCCTCTA 59.016 38.462 0.00 0.00 0.00 2.43
1996 3095 7.657761 CGTTCCAAAATATAGTGCTTCCTCTAT 59.342 37.037 0.00 0.00 33.61 1.98
1997 3096 9.343539 GTTCCAAAATATAGTGCTTCCTCTATT 57.656 33.333 0.00 0.00 31.97 1.73
1998 3097 9.561069 TTCCAAAATATAGTGCTTCCTCTATTC 57.439 33.333 0.00 0.00 31.97 1.75
1999 3098 8.157476 TCCAAAATATAGTGCTTCCTCTATTCC 58.843 37.037 0.00 0.00 31.97 3.01
2000 3099 7.391833 CCAAAATATAGTGCTTCCTCTATTCCC 59.608 40.741 0.00 0.00 31.97 3.97
2001 3100 5.923733 ATATAGTGCTTCCTCTATTCCCG 57.076 43.478 0.00 0.00 31.97 5.14
2002 3101 1.867363 AGTGCTTCCTCTATTCCCGT 58.133 50.000 0.00 0.00 0.00 5.28
2003 3102 1.482593 AGTGCTTCCTCTATTCCCGTG 59.517 52.381 0.00 0.00 0.00 4.94
2004 3103 0.178068 TGCTTCCTCTATTCCCGTGC 59.822 55.000 0.00 0.00 0.00 5.34
2005 3104 0.466124 GCTTCCTCTATTCCCGTGCT 59.534 55.000 0.00 0.00 0.00 4.40
2006 3105 1.134371 GCTTCCTCTATTCCCGTGCTT 60.134 52.381 0.00 0.00 0.00 3.91
2007 3106 2.827652 CTTCCTCTATTCCCGTGCTTC 58.172 52.381 0.00 0.00 0.00 3.86
2008 3107 1.860641 TCCTCTATTCCCGTGCTTCA 58.139 50.000 0.00 0.00 0.00 3.02
2009 3108 2.184533 TCCTCTATTCCCGTGCTTCAA 58.815 47.619 0.00 0.00 0.00 2.69
2010 3109 2.093658 TCCTCTATTCCCGTGCTTCAAC 60.094 50.000 0.00 0.00 0.00 3.18
2011 3110 2.093447 CCTCTATTCCCGTGCTTCAACT 60.093 50.000 0.00 0.00 0.00 3.16
2012 3111 3.600388 CTCTATTCCCGTGCTTCAACTT 58.400 45.455 0.00 0.00 0.00 2.66
2013 3112 4.003648 CTCTATTCCCGTGCTTCAACTTT 58.996 43.478 0.00 0.00 0.00 2.66
2014 3113 3.751175 TCTATTCCCGTGCTTCAACTTTG 59.249 43.478 0.00 0.00 0.00 2.77
2015 3114 2.045561 TTCCCGTGCTTCAACTTTGA 57.954 45.000 0.00 0.00 34.92 2.69
2016 3115 1.305201 TCCCGTGCTTCAACTTTGAC 58.695 50.000 0.00 0.00 36.83 3.18
2017 3116 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
2018 3117 1.021202 CCGTGCTTCAACTTTGACCA 58.979 50.000 0.00 0.00 36.83 4.02
2019 3118 1.608590 CCGTGCTTCAACTTTGACCAT 59.391 47.619 0.00 0.00 36.83 3.55
2020 3119 2.811431 CCGTGCTTCAACTTTGACCATA 59.189 45.455 0.00 0.00 36.83 2.74
2021 3120 3.252215 CCGTGCTTCAACTTTGACCATAA 59.748 43.478 0.00 0.00 36.83 1.90
2022 3121 4.261405 CCGTGCTTCAACTTTGACCATAAA 60.261 41.667 0.00 0.00 36.83 1.40
2023 3122 5.460646 CGTGCTTCAACTTTGACCATAAAT 58.539 37.500 0.00 0.00 36.83 1.40
2024 3123 5.920273 CGTGCTTCAACTTTGACCATAAATT 59.080 36.000 0.00 0.00 36.83 1.82
2025 3124 6.420604 CGTGCTTCAACTTTGACCATAAATTT 59.579 34.615 0.00 0.00 36.83 1.82
2026 3125 7.593273 CGTGCTTCAACTTTGACCATAAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
2027 3126 9.255304 GTGCTTCAACTTTGACCATAAATTTAA 57.745 29.630 1.21 0.00 36.83 1.52
2028 3127 9.255304 TGCTTCAACTTTGACCATAAATTTAAC 57.745 29.630 1.21 0.00 36.83 2.01
2029 3128 8.708742 GCTTCAACTTTGACCATAAATTTAACC 58.291 33.333 1.21 0.00 36.83 2.85
2030 3129 9.757227 CTTCAACTTTGACCATAAATTTAACCA 57.243 29.630 1.21 0.00 36.83 3.67
2032 3131 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
2033 3132 9.319143 CAACTTTGACCATAAATTTAACCAACA 57.681 29.630 1.21 0.00 0.00 3.33
2034 3133 9.892130 AACTTTGACCATAAATTTAACCAACAA 57.108 25.926 1.21 3.68 0.00 2.83
2035 3134 9.541143 ACTTTGACCATAAATTTAACCAACAAG 57.459 29.630 1.21 4.46 0.00 3.16
2036 3135 9.757227 CTTTGACCATAAATTTAACCAACAAGA 57.243 29.630 1.21 0.00 0.00 3.02
2037 3136 9.535878 TTTGACCATAAATTTAACCAACAAGAC 57.464 29.630 1.21 0.00 0.00 3.01
2038 3137 7.662897 TGACCATAAATTTAACCAACAAGACC 58.337 34.615 1.21 0.00 0.00 3.85
2039 3138 6.683715 ACCATAAATTTAACCAACAAGACCG 58.316 36.000 1.21 0.00 0.00 4.79
2040 3139 6.490721 ACCATAAATTTAACCAACAAGACCGA 59.509 34.615 1.21 0.00 0.00 4.69
2041 3140 6.804783 CCATAAATTTAACCAACAAGACCGAC 59.195 38.462 1.21 0.00 0.00 4.79
2042 3141 7.308951 CCATAAATTTAACCAACAAGACCGACT 60.309 37.037 1.21 0.00 0.00 4.18
2043 3142 5.432885 AATTTAACCAACAAGACCGACTG 57.567 39.130 0.00 0.00 0.00 3.51
2044 3143 1.873698 TAACCAACAAGACCGACTGC 58.126 50.000 0.00 0.00 0.00 4.40
2045 3144 1.157870 AACCAACAAGACCGACTGCG 61.158 55.000 0.00 0.00 37.24 5.18
2068 3167 3.606687 CGGGAGCAAAAGTTATACCAGT 58.393 45.455 0.00 0.00 0.00 4.00
2069 3168 3.374058 CGGGAGCAAAAGTTATACCAGTG 59.626 47.826 0.00 0.00 0.00 3.66
2070 3169 4.585879 GGGAGCAAAAGTTATACCAGTGA 58.414 43.478 0.00 0.00 0.00 3.41
2071 3170 5.007682 GGGAGCAAAAGTTATACCAGTGAA 58.992 41.667 0.00 0.00 0.00 3.18
2072 3171 5.652452 GGGAGCAAAAGTTATACCAGTGAAT 59.348 40.000 0.00 0.00 0.00 2.57
2073 3172 6.152831 GGGAGCAAAAGTTATACCAGTGAATT 59.847 38.462 0.00 0.00 0.00 2.17
2074 3173 7.251281 GGAGCAAAAGTTATACCAGTGAATTC 58.749 38.462 0.00 0.00 0.00 2.17
2075 3174 6.842163 AGCAAAAGTTATACCAGTGAATTCG 58.158 36.000 0.04 0.00 0.00 3.34
2076 3175 6.430000 AGCAAAAGTTATACCAGTGAATTCGT 59.570 34.615 0.04 0.00 0.00 3.85
2077 3176 7.604927 AGCAAAAGTTATACCAGTGAATTCGTA 59.395 33.333 0.04 0.00 0.00 3.43
2078 3177 8.395633 GCAAAAGTTATACCAGTGAATTCGTAT 58.604 33.333 0.04 5.16 0.00 3.06
2081 3180 9.661563 AAAGTTATACCAGTGAATTCGTATTCA 57.338 29.630 12.80 12.80 45.99 2.57
2122 3221 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
2123 3222 1.964373 TTTTTCTCCCGCCGCAGTC 60.964 57.895 0.00 0.00 0.00 3.51
2124 3223 4.735132 TTTCTCCCGCCGCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
2134 3233 3.786101 CGCAGTCGGTCTCATTGG 58.214 61.111 0.00 0.00 0.00 3.16
2135 3234 1.079819 CGCAGTCGGTCTCATTGGT 60.080 57.895 0.00 0.00 0.00 3.67
2136 3235 0.670546 CGCAGTCGGTCTCATTGGTT 60.671 55.000 0.00 0.00 0.00 3.67
2137 3236 1.403647 CGCAGTCGGTCTCATTGGTTA 60.404 52.381 0.00 0.00 0.00 2.85
2138 3237 2.695359 GCAGTCGGTCTCATTGGTTAA 58.305 47.619 0.00 0.00 0.00 2.01
2139 3238 3.071479 GCAGTCGGTCTCATTGGTTAAA 58.929 45.455 0.00 0.00 0.00 1.52
2140 3239 3.689649 GCAGTCGGTCTCATTGGTTAAAT 59.310 43.478 0.00 0.00 0.00 1.40
2141 3240 4.156008 GCAGTCGGTCTCATTGGTTAAATT 59.844 41.667 0.00 0.00 0.00 1.82
2142 3241 5.335661 GCAGTCGGTCTCATTGGTTAAATTT 60.336 40.000 0.00 0.00 0.00 1.82
2143 3242 6.128117 GCAGTCGGTCTCATTGGTTAAATTTA 60.128 38.462 0.00 0.00 0.00 1.40
2144 3243 7.415206 GCAGTCGGTCTCATTGGTTAAATTTAT 60.415 37.037 0.00 0.00 0.00 1.40
2145 3244 7.910162 CAGTCGGTCTCATTGGTTAAATTTATG 59.090 37.037 0.00 0.00 0.00 1.90
2146 3245 7.067008 AGTCGGTCTCATTGGTTAAATTTATGG 59.933 37.037 0.00 0.00 0.00 2.74
2147 3246 6.887545 TCGGTCTCATTGGTTAAATTTATGGT 59.112 34.615 0.00 0.00 0.00 3.55
2148 3247 7.066525 TCGGTCTCATTGGTTAAATTTATGGTC 59.933 37.037 0.00 0.00 0.00 4.02
2149 3248 7.148154 CGGTCTCATTGGTTAAATTTATGGTCA 60.148 37.037 0.00 0.00 0.00 4.02
2150 3249 8.527810 GGTCTCATTGGTTAAATTTATGGTCAA 58.472 33.333 0.00 2.87 0.00 3.18
2151 3250 9.921637 GTCTCATTGGTTAAATTTATGGTCAAA 57.078 29.630 0.00 0.00 0.00 2.69
2153 3252 9.927668 CTCATTGGTTAAATTTATGGTCAAAGT 57.072 29.630 0.00 0.00 0.00 2.66
2156 3255 8.894768 TTGGTTAAATTTATGGTCAAAGTTGG 57.105 30.769 0.00 0.00 29.44 3.77
2157 3256 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
2158 3257 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
2164 3263 2.928416 GTCAAAGTTGGACCTCGGG 58.072 57.895 0.00 0.00 0.00 5.14
2165 3264 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.000 0.00 0.00 0.00 5.14
2166 3265 1.133363 TCAAAGTTGGACCTCGGGAA 58.867 50.000 0.00 0.00 0.00 3.97
2167 3266 1.071699 TCAAAGTTGGACCTCGGGAAG 59.928 52.381 0.00 0.00 0.00 3.46
2168 3267 1.137697 AAAGTTGGACCTCGGGAAGT 58.862 50.000 0.00 0.00 0.00 3.01
2169 3268 0.396811 AAGTTGGACCTCGGGAAGTG 59.603 55.000 0.00 0.00 0.00 3.16
2170 3269 1.671379 GTTGGACCTCGGGAAGTGC 60.671 63.158 0.00 0.00 0.00 4.40
2171 3270 3.234630 TTGGACCTCGGGAAGTGCG 62.235 63.158 0.00 0.00 0.00 5.34
2172 3271 4.452733 GGACCTCGGGAAGTGCGG 62.453 72.222 0.00 0.00 0.00 5.69
2173 3272 4.452733 GACCTCGGGAAGTGCGGG 62.453 72.222 0.00 0.00 0.00 6.13
2187 3286 3.454941 GCGGGCGCACTATATTTTG 57.545 52.632 8.62 0.00 41.49 2.44
2188 3287 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
2189 3288 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
2190 3289 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
2191 3290 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
2192 3291 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
2193 3292 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
2194 3293 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
2195 3294 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
2196 3295 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
2197 3296 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
2198 3297 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
2199 3298 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
2281 3380 2.358615 GGCGACCTGACATGCACA 60.359 61.111 0.00 0.00 0.00 4.57
2557 3658 3.517500 ACAAGATTTTGGGTGTGTTTGGT 59.482 39.130 0.57 0.00 38.66 3.67
2558 3659 4.019771 ACAAGATTTTGGGTGTGTTTGGTT 60.020 37.500 0.57 0.00 38.66 3.67
2559 3660 4.835284 AGATTTTGGGTGTGTTTGGTTT 57.165 36.364 0.00 0.00 0.00 3.27
2560 3661 4.512484 AGATTTTGGGTGTGTTTGGTTTG 58.488 39.130 0.00 0.00 0.00 2.93
2561 3662 4.223923 AGATTTTGGGTGTGTTTGGTTTGA 59.776 37.500 0.00 0.00 0.00 2.69
2562 3663 3.601443 TTTGGGTGTGTTTGGTTTGAG 57.399 42.857 0.00 0.00 0.00 3.02
2563 3664 1.479709 TGGGTGTGTTTGGTTTGAGG 58.520 50.000 0.00 0.00 0.00 3.86
2564 3665 0.104120 GGGTGTGTTTGGTTTGAGGC 59.896 55.000 0.00 0.00 0.00 4.70
2680 3782 3.526931 TGCAACCGTCCAAAATTTTGA 57.473 38.095 28.44 13.97 40.55 2.69
2878 4135 5.447624 TGCATTGCATCCTTAATCATGAG 57.552 39.130 7.38 0.00 31.71 2.90
2985 4268 5.397360 ACCCACAGAGAAAAAGATGGAAAT 58.603 37.500 0.00 0.00 0.00 2.17
3027 4310 1.503818 AACGTTTTGCTCGCCATCGT 61.504 50.000 0.00 0.00 36.96 3.73
3030 4313 0.517316 GTTTTGCTCGCCATCGTCTT 59.483 50.000 0.00 0.00 36.96 3.01
3579 4870 6.303839 TCCTTACCAGAACAAACTTAAGCAT 58.696 36.000 1.29 0.00 0.00 3.79
3660 4951 1.079819 AGGTGACGTTCCGATGCTG 60.080 57.895 0.00 0.00 0.00 4.41
3813 5104 9.926158 ACATCTATGCATGTTAAACAAAATTCA 57.074 25.926 10.16 0.00 32.81 2.57
3816 5107 9.844790 TCTATGCATGTTAAACAAAATTCAGAG 57.155 29.630 10.16 0.00 0.00 3.35
3817 5108 9.844790 CTATGCATGTTAAACAAAATTCAGAGA 57.155 29.630 10.16 0.00 0.00 3.10
3820 5111 9.624697 TGCATGTTAAACAAAATTCAGAGATAC 57.375 29.630 0.00 0.00 0.00 2.24
3821 5112 9.624697 GCATGTTAAACAAAATTCAGAGATACA 57.375 29.630 0.00 0.00 0.00 2.29
3856 5147 1.301716 GCCTGTCTCTTGGCGTTCA 60.302 57.895 0.00 0.00 39.71 3.18
3862 5153 2.224281 TGTCTCTTGGCGTTCAGAATGT 60.224 45.455 4.25 0.00 37.40 2.71
3865 5156 2.143122 TCTTGGCGTTCAGAATGTGAC 58.857 47.619 4.25 0.00 37.40 3.67
3871 5162 3.491267 GGCGTTCAGAATGTGACTATAGC 59.509 47.826 0.00 0.00 37.40 2.97
3908 5199 1.403814 AGCCTTCCGATCGATCTTCA 58.596 50.000 22.43 3.93 0.00 3.02
3933 5224 5.434352 TGTGTTCAGTCTACTGTAGTGAC 57.566 43.478 14.11 6.88 44.12 3.67
3935 5226 5.213675 GTGTTCAGTCTACTGTAGTGACAC 58.786 45.833 14.11 15.93 44.12 3.67
4032 5323 2.608059 TCCCCGGTGTACATGGCA 60.608 61.111 10.75 0.00 0.00 4.92
4282 5586 1.863662 GAAGGAGCAGTGACCGACGA 61.864 60.000 0.00 0.00 0.00 4.20
4283 5587 2.126424 GGAGCAGTGACCGACGAC 60.126 66.667 0.00 0.00 0.00 4.34
4284 5588 2.502080 GAGCAGTGACCGACGACG 60.502 66.667 0.00 0.00 39.43 5.12
4285 5589 2.962827 GAGCAGTGACCGACGACGA 61.963 63.158 9.28 0.00 42.66 4.20
4286 5590 2.799916 GCAGTGACCGACGACGAC 60.800 66.667 9.28 0.00 42.66 4.34
4287 5591 2.499098 CAGTGACCGACGACGACG 60.499 66.667 12.66 12.66 42.66 5.12
4288 5592 2.662857 AGTGACCGACGACGACGA 60.663 61.111 20.63 0.00 42.66 4.20
4289 5593 2.202146 GTGACCGACGACGACGAG 60.202 66.667 20.63 12.79 42.66 4.18
4290 5594 4.081030 TGACCGACGACGACGAGC 62.081 66.667 20.63 12.02 42.66 5.03
4291 5595 4.808238 GACCGACGACGACGAGCC 62.808 72.222 20.63 5.87 42.66 4.70
4293 5597 4.175489 CCGACGACGACGAGCCAT 62.175 66.667 20.63 0.00 42.66 4.40
4294 5598 2.944557 CGACGACGACGAGCCATG 60.945 66.667 15.32 0.00 42.66 3.66
4357 5661 1.639298 CCGCTGCAGCAAAGAGTACC 61.639 60.000 36.03 5.05 42.21 3.34
4371 5675 0.249489 AGTACCAGATCGGCAATCGC 60.249 55.000 3.85 0.00 39.55 4.58
4398 5702 0.604780 GCCTGTCTGTCTGTGCACAT 60.605 55.000 22.00 0.00 0.00 3.21
4399 5703 1.154197 CCTGTCTGTCTGTGCACATG 58.846 55.000 22.00 14.47 0.00 3.21
4400 5704 0.516001 CTGTCTGTCTGTGCACATGC 59.484 55.000 22.00 16.17 42.50 4.06
4450 5754 4.379652 GTGATTCCATTGTTTTGTTGCCT 58.620 39.130 0.00 0.00 0.00 4.75
4474 5778 2.564947 CTGGGAGACTGTCTGCTACTTT 59.435 50.000 25.26 0.00 35.01 2.66
4502 5806 3.369546 ACTTGGTGTACAAATGCTTGC 57.630 42.857 0.00 0.00 38.91 4.01
4537 5841 4.986875 GTTCCCAAGAACGTACTTCTTC 57.013 45.455 13.88 3.12 44.68 2.87
4538 5842 4.629092 GTTCCCAAGAACGTACTTCTTCT 58.371 43.478 13.88 4.97 44.68 2.85
4629 5956 2.980177 GCCCTGGTTCCCTGTACCC 61.980 68.421 0.00 0.00 34.66 3.69
4647 5974 1.752694 CATTTCGGTTGGGGGCGAT 60.753 57.895 0.00 0.00 0.00 4.58
4671 5998 4.380023 GCTCCTATAGATAGCAAGGTGTCG 60.380 50.000 17.40 0.00 36.26 4.35
4706 6033 1.705873 ATCTTAAGACCCGATCCGCT 58.294 50.000 7.48 0.00 0.00 5.52
4723 6050 1.111715 GCTGGCCCATCCATCCTTTC 61.112 60.000 0.00 0.00 45.50 2.62
4724 6051 0.259647 CTGGCCCATCCATCCTTTCA 59.740 55.000 0.00 0.00 45.50 2.69
4727 6054 1.758862 GGCCCATCCATCCTTTCAAAG 59.241 52.381 0.00 0.00 34.01 2.77
4741 6068 1.568504 TCAAAGGTGCTCGTAGGGAT 58.431 50.000 0.00 0.00 0.00 3.85
4754 6081 0.764890 TAGGGATAGGGTGTGCATGC 59.235 55.000 11.82 11.82 0.00 4.06
4759 6086 0.462581 ATAGGGTGTGCATGCGTCTG 60.463 55.000 14.09 0.00 0.00 3.51
4771 6098 2.125461 TGCGTCTGCTGATCTATTCG 57.875 50.000 0.00 0.00 43.34 3.34
4783 6110 3.889538 TGATCTATTCGTAGGGGTGAGTG 59.110 47.826 0.00 0.00 0.00 3.51
4784 6111 2.029623 TCTATTCGTAGGGGTGAGTGC 58.970 52.381 0.00 0.00 0.00 4.40
4838 6165 1.133388 CCACAATGCCATATGGGAGGT 60.133 52.381 23.30 18.69 39.50 3.85
4907 6234 1.614413 GGAGGTCTTGTCGTCTCAAGT 59.386 52.381 13.72 0.90 43.44 3.16
4966 6350 2.033424 GGTGGAAGCTGTTTCTGTGTTC 59.967 50.000 4.26 0.00 36.03 3.18
4974 6358 4.096984 AGCTGTTTCTGTGTTCAAAAGAGG 59.903 41.667 0.00 0.00 0.00 3.69
4983 6367 4.518970 TGTGTTCAAAAGAGGAACTATGGC 59.481 41.667 6.80 0.00 43.84 4.40
5020 6404 1.292992 GGAAACCAACGAACACGAGT 58.707 50.000 0.00 0.00 0.00 4.18
5035 6419 4.499183 ACACGAGTGAAGAAATGGAGATC 58.501 43.478 10.50 0.00 0.00 2.75
5040 6424 4.583871 AGTGAAGAAATGGAGATCACCAC 58.416 43.478 14.58 2.10 43.03 4.16
5042 6426 4.394300 GTGAAGAAATGGAGATCACCACTG 59.606 45.833 14.58 0.00 43.03 3.66
5047 6436 0.909610 TGGAGATCACCACTGGACCC 60.910 60.000 7.91 0.00 34.77 4.46
5060 6449 2.266055 GACCCTGCCAGTTCGAGG 59.734 66.667 0.00 0.00 0.00 4.63
5077 6466 3.009033 TCGAGGGAATCACTGACCAAAAT 59.991 43.478 0.00 0.00 0.00 1.82
5094 6483 4.280819 CAAAATCAGGGGATAAGAAGGCA 58.719 43.478 0.00 0.00 32.09 4.75
5113 6502 2.219458 CATCCGAAGCAGAGCATTCAT 58.781 47.619 0.00 0.00 0.00 2.57
5183 6572 2.262915 CTCTGCCCGCGAGAGTTT 59.737 61.111 8.23 0.00 33.54 2.66
5202 6591 0.888619 TGAATCTCTCAGGCGTCGTT 59.111 50.000 0.00 0.00 0.00 3.85
5218 6608 3.783943 CGTCGTTTCCTTTTGTTGTTCAG 59.216 43.478 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.359975 GGCGGCAGTAGCAACCTT 60.360 61.111 3.07 0.00 44.61 3.50
12 13 4.759205 GGGGGAAATGGCGGCAGT 62.759 66.667 19.29 13.15 0.00 4.40
14 15 4.307502 TTGGGGGAAATGGCGGCA 62.308 61.111 16.34 16.34 0.00 5.69
21 22 2.039462 GCTGGGCTTGGGGGAAAT 59.961 61.111 0.00 0.00 0.00 2.17
112 117 2.057922 GCAATCCCTATCTTCTCCCCA 58.942 52.381 0.00 0.00 0.00 4.96
277 291 3.649981 CCATATGAACCCTCCACTCAGAT 59.350 47.826 3.65 0.00 0.00 2.90
429 771 1.147376 CCATTCGGGGATACGGCAA 59.853 57.895 0.00 0.00 37.60 4.52
453 795 6.241207 ACACAGGATACGACATTTTTCAAG 57.759 37.500 0.00 0.00 46.39 3.02
502 847 3.873679 TAGCACGGACACGGGGACT 62.874 63.158 0.00 0.00 45.61 3.85
520 865 5.417894 GCCTTAGTAGTTGCCACCTAAAAAT 59.582 40.000 0.00 0.00 0.00 1.82
524 869 2.237893 GGCCTTAGTAGTTGCCACCTAA 59.762 50.000 0.00 0.00 43.46 2.69
525 870 1.835531 GGCCTTAGTAGTTGCCACCTA 59.164 52.381 0.00 0.00 43.46 3.08
688 1039 0.770557 ACCAGTTAGGCCACCCTTGA 60.771 55.000 5.01 0.00 42.87 3.02
718 1207 4.133820 CACCCACACATTCAGAGTTAACA 58.866 43.478 8.61 0.00 0.00 2.41
727 1216 2.117206 GCCCCACCCACACATTCA 59.883 61.111 0.00 0.00 0.00 2.57
789 1866 0.322816 ACCTGCATGGGTCATCACAC 60.323 55.000 7.06 0.00 41.11 3.82
790 1867 0.405198 AACCTGCATGGGTCATCACA 59.595 50.000 0.00 0.00 38.87 3.58
931 2008 2.648059 CCACCACTCCATCATTCCTTC 58.352 52.381 0.00 0.00 0.00 3.46
938 2015 2.209809 ACCCCCACCACTCCATCA 59.790 61.111 0.00 0.00 0.00 3.07
997 2074 1.664321 CTGCTTCCTGGAGCCATTGC 61.664 60.000 13.24 6.39 42.01 3.56
1005 2082 0.401356 TCACAATGCTGCTTCCTGGA 59.599 50.000 0.00 0.00 0.00 3.86
1038 2115 0.742281 CGCCACAATCTGACTCAGGG 60.742 60.000 6.20 0.55 31.51 4.45
1247 2324 5.163713 GCTGCAGGACTACAAAGATTTAAGG 60.164 44.000 17.12 0.00 0.00 2.69
1448 2539 9.357652 GTCACAAATGCAACATCTATACAAAAT 57.642 29.630 0.00 0.00 0.00 1.82
1449 2540 8.355913 TGTCACAAATGCAACATCTATACAAAA 58.644 29.630 0.00 0.00 0.00 2.44
1450 2541 7.880105 TGTCACAAATGCAACATCTATACAAA 58.120 30.769 0.00 0.00 0.00 2.83
1695 2793 9.901172 AATAGAACGATCAAGGGTACTTTATTT 57.099 29.630 0.00 0.00 33.81 1.40
1731 2830 7.902920 AATGGTAGGCAATTCTACATGAAAT 57.097 32.000 0.00 0.00 40.88 2.17
1853 2952 3.505680 ACATGCAATACGGTGAACACAAT 59.494 39.130 7.25 0.00 0.00 2.71
1916 3015 9.066892 AGTGTTGAGTTATTTTCTTTCAGCATA 57.933 29.630 0.00 0.00 32.90 3.14
1949 3048 3.244249 CGGAGGGAGTATTGGGATTCTTC 60.244 52.174 0.00 0.00 0.00 2.87
1961 3060 5.901276 ACTATATTTTGGAACGGAGGGAGTA 59.099 40.000 0.00 0.00 0.00 2.59
1962 3061 4.720273 ACTATATTTTGGAACGGAGGGAGT 59.280 41.667 0.00 0.00 0.00 3.85
1963 3062 5.057149 CACTATATTTTGGAACGGAGGGAG 58.943 45.833 0.00 0.00 0.00 4.30
1964 3063 4.685030 GCACTATATTTTGGAACGGAGGGA 60.685 45.833 0.00 0.00 0.00 4.20
1965 3064 3.564225 GCACTATATTTTGGAACGGAGGG 59.436 47.826 0.00 0.00 0.00 4.30
1966 3065 4.451900 AGCACTATATTTTGGAACGGAGG 58.548 43.478 0.00 0.00 0.00 4.30
1967 3066 5.007724 GGAAGCACTATATTTTGGAACGGAG 59.992 44.000 0.00 0.00 0.00 4.63
1968 3067 4.879545 GGAAGCACTATATTTTGGAACGGA 59.120 41.667 0.00 0.00 0.00 4.69
1969 3068 4.881850 AGGAAGCACTATATTTTGGAACGG 59.118 41.667 0.00 0.00 0.00 4.44
1970 3069 5.817816 AGAGGAAGCACTATATTTTGGAACG 59.182 40.000 0.00 0.00 0.00 3.95
1971 3070 8.910351 ATAGAGGAAGCACTATATTTTGGAAC 57.090 34.615 0.00 0.00 0.00 3.62
1972 3071 9.561069 GAATAGAGGAAGCACTATATTTTGGAA 57.439 33.333 5.02 0.00 35.62 3.53
1973 3072 8.157476 GGAATAGAGGAAGCACTATATTTTGGA 58.843 37.037 5.02 0.00 35.62 3.53
1974 3073 7.391833 GGGAATAGAGGAAGCACTATATTTTGG 59.608 40.741 5.02 0.00 35.62 3.28
1975 3074 7.118390 CGGGAATAGAGGAAGCACTATATTTTG 59.882 40.741 5.02 0.00 35.62 2.44
1976 3075 7.162082 CGGGAATAGAGGAAGCACTATATTTT 58.838 38.462 5.02 0.00 35.62 1.82
1977 3076 6.270231 ACGGGAATAGAGGAAGCACTATATTT 59.730 38.462 5.02 0.00 35.62 1.40
1978 3077 5.780793 ACGGGAATAGAGGAAGCACTATATT 59.219 40.000 3.60 3.60 37.52 1.28
1979 3078 5.186021 CACGGGAATAGAGGAAGCACTATAT 59.814 44.000 0.00 0.00 0.00 0.86
1980 3079 4.523173 CACGGGAATAGAGGAAGCACTATA 59.477 45.833 0.00 0.00 0.00 1.31
1981 3080 3.322254 CACGGGAATAGAGGAAGCACTAT 59.678 47.826 0.00 0.00 0.00 2.12
1982 3081 2.693591 CACGGGAATAGAGGAAGCACTA 59.306 50.000 0.00 0.00 0.00 2.74
1983 3082 1.482593 CACGGGAATAGAGGAAGCACT 59.517 52.381 0.00 0.00 0.00 4.40
1984 3083 1.941325 CACGGGAATAGAGGAAGCAC 58.059 55.000 0.00 0.00 0.00 4.40
1985 3084 0.178068 GCACGGGAATAGAGGAAGCA 59.822 55.000 0.00 0.00 0.00 3.91
1986 3085 0.466124 AGCACGGGAATAGAGGAAGC 59.534 55.000 0.00 0.00 0.00 3.86
1987 3086 2.168521 TGAAGCACGGGAATAGAGGAAG 59.831 50.000 0.00 0.00 0.00 3.46
1988 3087 2.184533 TGAAGCACGGGAATAGAGGAA 58.815 47.619 0.00 0.00 0.00 3.36
1989 3088 1.860641 TGAAGCACGGGAATAGAGGA 58.139 50.000 0.00 0.00 0.00 3.71
1990 3089 2.093447 AGTTGAAGCACGGGAATAGAGG 60.093 50.000 0.00 0.00 0.00 3.69
1991 3090 3.252974 AGTTGAAGCACGGGAATAGAG 57.747 47.619 0.00 0.00 0.00 2.43
1992 3091 3.695830 AAGTTGAAGCACGGGAATAGA 57.304 42.857 0.00 0.00 0.00 1.98
1993 3092 3.751175 TCAAAGTTGAAGCACGGGAATAG 59.249 43.478 0.00 0.00 33.55 1.73
1994 3093 3.500680 GTCAAAGTTGAAGCACGGGAATA 59.499 43.478 0.00 0.00 39.21 1.75
1995 3094 2.293399 GTCAAAGTTGAAGCACGGGAAT 59.707 45.455 0.00 0.00 39.21 3.01
1996 3095 1.673920 GTCAAAGTTGAAGCACGGGAA 59.326 47.619 0.00 0.00 39.21 3.97
1997 3096 1.305201 GTCAAAGTTGAAGCACGGGA 58.695 50.000 0.00 0.00 39.21 5.14
1998 3097 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
1999 3098 1.021202 TGGTCAAAGTTGAAGCACGG 58.979 50.000 0.00 0.00 39.21 4.94
2000 3099 4.481930 TTATGGTCAAAGTTGAAGCACG 57.518 40.909 0.00 0.00 39.21 5.34
2001 3100 7.713764 AAATTTATGGTCAAAGTTGAAGCAC 57.286 32.000 0.00 0.00 39.21 4.40
2002 3101 9.255304 GTTAAATTTATGGTCAAAGTTGAAGCA 57.745 29.630 0.00 0.00 39.21 3.91
2003 3102 8.708742 GGTTAAATTTATGGTCAAAGTTGAAGC 58.291 33.333 0.00 0.00 39.21 3.86
2004 3103 9.757227 TGGTTAAATTTATGGTCAAAGTTGAAG 57.243 29.630 0.00 0.00 39.21 3.02
2006 3105 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
2007 3106 9.319143 TGTTGGTTAAATTTATGGTCAAAGTTG 57.681 29.630 0.00 0.00 29.44 3.16
2008 3107 9.892130 TTGTTGGTTAAATTTATGGTCAAAGTT 57.108 25.926 0.00 0.00 31.36 2.66
2009 3108 9.541143 CTTGTTGGTTAAATTTATGGTCAAAGT 57.459 29.630 0.00 0.00 0.00 2.66
2010 3109 9.757227 TCTTGTTGGTTAAATTTATGGTCAAAG 57.243 29.630 0.00 1.33 0.00 2.77
2011 3110 9.535878 GTCTTGTTGGTTAAATTTATGGTCAAA 57.464 29.630 0.00 0.00 0.00 2.69
2012 3111 8.145122 GGTCTTGTTGGTTAAATTTATGGTCAA 58.855 33.333 0.00 0.00 0.00 3.18
2013 3112 7.522399 CGGTCTTGTTGGTTAAATTTATGGTCA 60.522 37.037 0.00 0.00 0.00 4.02
2014 3113 6.804783 CGGTCTTGTTGGTTAAATTTATGGTC 59.195 38.462 0.00 0.00 0.00 4.02
2015 3114 6.490721 TCGGTCTTGTTGGTTAAATTTATGGT 59.509 34.615 0.00 0.00 0.00 3.55
2016 3115 6.804783 GTCGGTCTTGTTGGTTAAATTTATGG 59.195 38.462 0.00 0.00 0.00 2.74
2017 3116 7.537306 CAGTCGGTCTTGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
2018 3117 7.590279 CAGTCGGTCTTGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
2019 3118 6.513720 GCAGTCGGTCTTGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
2020 3119 5.735070 GCAGTCGGTCTTGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
2021 3120 4.261447 GCAGTCGGTCTTGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
2022 3121 3.252458 GCAGTCGGTCTTGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
2023 3122 2.614983 GCAGTCGGTCTTGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
2024 3123 2.215196 GCAGTCGGTCTTGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
2025 3124 1.870580 CGCAGTCGGTCTTGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
2026 3125 1.157870 CGCAGTCGGTCTTGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
2027 3126 1.594293 CGCAGTCGGTCTTGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
2028 3127 3.244105 CGCAGTCGGTCTTGTTGG 58.756 61.111 0.00 0.00 0.00 3.77
2040 3139 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
2041 3140 4.107051 CTTTTGCTCCCGCCGCAG 62.107 66.667 0.00 0.00 38.80 5.18
2042 3141 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
2043 3142 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
2044 3143 1.329599 GTATAACTTTTGCTCCCGCCG 59.670 52.381 0.00 0.00 34.43 6.46
2045 3144 1.674441 GGTATAACTTTTGCTCCCGCC 59.326 52.381 0.00 0.00 34.43 6.13
2046 3145 2.354821 CTGGTATAACTTTTGCTCCCGC 59.645 50.000 0.00 0.00 0.00 6.13
2047 3146 3.374058 CACTGGTATAACTTTTGCTCCCG 59.626 47.826 0.00 0.00 0.00 5.14
2048 3147 4.585879 TCACTGGTATAACTTTTGCTCCC 58.414 43.478 0.00 0.00 0.00 4.30
2049 3148 6.759497 ATTCACTGGTATAACTTTTGCTCC 57.241 37.500 0.00 0.00 0.00 4.70
2050 3149 6.961554 CGAATTCACTGGTATAACTTTTGCTC 59.038 38.462 6.22 0.00 0.00 4.26
2051 3150 6.430000 ACGAATTCACTGGTATAACTTTTGCT 59.570 34.615 6.22 0.00 0.00 3.91
2052 3151 6.608610 ACGAATTCACTGGTATAACTTTTGC 58.391 36.000 6.22 0.00 0.00 3.68
2055 3154 9.661563 TGAATACGAATTCACTGGTATAACTTT 57.338 29.630 6.22 0.00 45.17 2.66
2105 3204 1.964373 GACTGCGGCGGGAGAAAAA 60.964 57.895 19.55 0.00 35.29 1.94
2106 3205 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
2107 3206 4.735132 CGACTGCGGCGGGAGAAA 62.735 66.667 19.55 0.00 35.29 2.52
2117 3216 0.670546 AACCAATGAGACCGACTGCG 60.671 55.000 0.00 0.00 37.24 5.18
2118 3217 2.380084 TAACCAATGAGACCGACTGC 57.620 50.000 0.00 0.00 0.00 4.40
2119 3218 5.880054 AATTTAACCAATGAGACCGACTG 57.120 39.130 0.00 0.00 0.00 3.51
2120 3219 7.067008 CCATAAATTTAACCAATGAGACCGACT 59.933 37.037 1.21 0.00 0.00 4.18
2121 3220 7.148137 ACCATAAATTTAACCAATGAGACCGAC 60.148 37.037 1.21 0.00 0.00 4.79
2122 3221 6.887545 ACCATAAATTTAACCAATGAGACCGA 59.112 34.615 1.21 0.00 0.00 4.69
2123 3222 7.095695 ACCATAAATTTAACCAATGAGACCG 57.904 36.000 1.21 0.00 0.00 4.79
2124 3223 8.062065 TGACCATAAATTTAACCAATGAGACC 57.938 34.615 1.21 0.00 0.00 3.85
2125 3224 9.921637 TTTGACCATAAATTTAACCAATGAGAC 57.078 29.630 1.21 0.00 0.00 3.36
2127 3226 9.927668 ACTTTGACCATAAATTTAACCAATGAG 57.072 29.630 1.21 3.35 0.00 2.90
2130 3229 9.500785 CCAACTTTGACCATAAATTTAACCAAT 57.499 29.630 1.21 0.00 0.00 3.16
2131 3230 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
2132 3231 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
2133 3232 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
2134 3233 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
2135 3234 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
2136 3235 7.094549 CGAGGTCCAACTTTGACCATAAATTTA 60.095 37.037 13.24 0.00 41.22 1.40
2137 3236 6.294508 CGAGGTCCAACTTTGACCATAAATTT 60.295 38.462 13.24 0.00 41.22 1.82
2138 3237 5.183140 CGAGGTCCAACTTTGACCATAAATT 59.817 40.000 13.24 0.00 41.22 1.82
2139 3238 4.700213 CGAGGTCCAACTTTGACCATAAAT 59.300 41.667 13.24 0.00 41.22 1.40
2140 3239 4.069304 CGAGGTCCAACTTTGACCATAAA 58.931 43.478 13.24 0.00 41.22 1.40
2141 3240 3.558321 CCGAGGTCCAACTTTGACCATAA 60.558 47.826 13.24 0.00 41.22 1.90
2142 3241 2.027561 CCGAGGTCCAACTTTGACCATA 60.028 50.000 13.24 0.00 41.22 2.74
2143 3242 1.271379 CCGAGGTCCAACTTTGACCAT 60.271 52.381 13.24 0.72 41.22 3.55
2144 3243 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.000 13.24 0.00 41.22 4.02
2145 3244 0.605589 CCCGAGGTCCAACTTTGACC 60.606 60.000 4.16 4.16 39.18 4.02
2146 3245 0.395312 TCCCGAGGTCCAACTTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
2147 3246 1.071699 CTTCCCGAGGTCCAACTTTGA 59.928 52.381 0.00 0.00 0.00 2.69
2148 3247 1.202770 ACTTCCCGAGGTCCAACTTTG 60.203 52.381 0.00 0.00 0.00 2.77
2149 3248 1.137697 ACTTCCCGAGGTCCAACTTT 58.862 50.000 0.00 0.00 0.00 2.66
2150 3249 0.396811 CACTTCCCGAGGTCCAACTT 59.603 55.000 0.00 0.00 0.00 2.66
2151 3250 2.058675 CACTTCCCGAGGTCCAACT 58.941 57.895 0.00 0.00 0.00 3.16
2152 3251 1.671379 GCACTTCCCGAGGTCCAAC 60.671 63.158 0.00 0.00 0.00 3.77
2153 3252 2.747686 GCACTTCCCGAGGTCCAA 59.252 61.111 0.00 0.00 0.00 3.53
2154 3253 3.691342 CGCACTTCCCGAGGTCCA 61.691 66.667 0.00 0.00 0.00 4.02
2155 3254 4.452733 CCGCACTTCCCGAGGTCC 62.453 72.222 0.00 0.00 0.00 4.46
2156 3255 4.452733 CCCGCACTTCCCGAGGTC 62.453 72.222 0.00 0.00 0.00 3.85
2169 3268 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
2170 3269 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
2171 3270 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
2172 3271 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
2173 3272 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
2174 3273 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
2175 3274 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
2176 3275 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
2177 3276 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
2178 3277 6.881602 GCTACTCCCTCCATTCCAAAATATAG 59.118 42.308 0.00 0.00 0.00 1.31
2179 3278 6.331572 TGCTACTCCCTCCATTCCAAAATATA 59.668 38.462 0.00 0.00 0.00 0.86
2180 3279 5.134339 TGCTACTCCCTCCATTCCAAAATAT 59.866 40.000 0.00 0.00 0.00 1.28
2181 3280 4.476846 TGCTACTCCCTCCATTCCAAAATA 59.523 41.667 0.00 0.00 0.00 1.40
2182 3281 3.269381 TGCTACTCCCTCCATTCCAAAAT 59.731 43.478 0.00 0.00 0.00 1.82
2183 3282 2.647299 TGCTACTCCCTCCATTCCAAAA 59.353 45.455 0.00 0.00 0.00 2.44
2184 3283 2.274542 TGCTACTCCCTCCATTCCAAA 58.725 47.619 0.00 0.00 0.00 3.28
2185 3284 1.965414 TGCTACTCCCTCCATTCCAA 58.035 50.000 0.00 0.00 0.00 3.53
2186 3285 2.196742 ATGCTACTCCCTCCATTCCA 57.803 50.000 0.00 0.00 0.00 3.53
2187 3286 3.584733 AAATGCTACTCCCTCCATTCC 57.415 47.619 0.00 0.00 0.00 3.01
2281 3380 1.115930 ACTCTCGCTGTGTGTTCCCT 61.116 55.000 0.00 0.00 0.00 4.20
2351 3452 4.381079 GCACAACAGTAAGACCTCTAGGAG 60.381 50.000 2.23 0.00 38.94 3.69
2563 3664 1.315981 GGCTAGTTGGGGCTCAAAGC 61.316 60.000 14.13 14.13 41.46 3.51
2564 3665 0.681243 GGGCTAGTTGGGGCTCAAAG 60.681 60.000 0.00 0.00 37.08 2.77
2878 4135 7.396339 CCCTTAATTAATTATTAGTGGGCCTCC 59.604 40.741 8.70 0.00 37.43 4.30
2985 4268 3.001395 CCAACATTTTGGCGTCGTAAA 57.999 42.857 0.00 0.00 46.09 2.01
3579 4870 0.833409 TGAACCTGCAGAGCTCCTCA 60.833 55.000 17.39 7.73 32.06 3.86
3660 4951 4.125703 GGTCATTGATGAGATGAGACACC 58.874 47.826 0.00 0.00 37.51 4.16
3817 5108 4.836825 GCACAGCCAGATACCATATGTAT 58.163 43.478 1.24 0.18 42.95 2.29
3818 5109 4.271696 GCACAGCCAGATACCATATGTA 57.728 45.455 1.24 0.00 0.00 2.29
3819 5110 3.131709 GCACAGCCAGATACCATATGT 57.868 47.619 1.24 0.00 0.00 2.29
3833 5124 3.978272 CCAAGAGACAGGCACAGC 58.022 61.111 0.00 0.00 0.00 4.40
3856 5147 4.290093 TGACAGGGCTATAGTCACATTCT 58.710 43.478 6.69 0.00 37.36 2.40
3862 5153 4.809193 AGAAGATGACAGGGCTATAGTCA 58.191 43.478 6.69 0.37 45.26 3.41
3865 5156 5.923204 ACAAAGAAGATGACAGGGCTATAG 58.077 41.667 0.00 0.00 0.00 1.31
3871 5162 3.054802 AGGCTACAAAGAAGATGACAGGG 60.055 47.826 0.00 0.00 0.00 4.45
3908 5199 4.022762 CACTACAGTAGACTGAACACAGCT 60.023 45.833 16.44 0.00 46.59 4.24
4173 5464 1.522092 GTGGATGATGAGCCCGTCA 59.478 57.895 0.00 0.00 42.03 4.35
4290 5594 4.517934 CCCCAGCAGGAGCCATGG 62.518 72.222 7.63 7.63 43.56 3.66
4291 5595 4.517934 CCCCCAGCAGGAGCCATG 62.518 72.222 0.00 0.00 43.56 3.66
4357 5661 4.005472 GCCGCGATTGCCGATCTG 62.005 66.667 8.23 0.00 41.76 2.90
4398 5702 2.125552 CGACCGAAGAGGCATGCA 60.126 61.111 21.36 0.00 46.52 3.96
4399 5703 1.298859 AAACGACCGAAGAGGCATGC 61.299 55.000 9.90 9.90 46.52 4.06
4400 5704 0.443869 CAAACGACCGAAGAGGCATG 59.556 55.000 0.00 0.00 46.52 4.06
4401 5705 0.034896 ACAAACGACCGAAGAGGCAT 59.965 50.000 0.00 0.00 46.52 4.40
4450 5754 1.123861 AGCAGACAGTCTCCCAGCAA 61.124 55.000 11.98 0.00 0.00 3.91
4474 5778 2.920724 TGTACACCAAGTAGCAGCAA 57.079 45.000 0.00 0.00 32.19 3.91
4502 5806 3.672066 GGAACCCTTTCCCTTCCAG 57.328 57.895 0.00 0.00 45.27 3.86
4533 5837 8.412456 TGCAAGAAATTTCACAACATAAGAAGA 58.588 29.630 19.99 0.00 0.00 2.87
4535 5839 8.939201 TTGCAAGAAATTTCACAACATAAGAA 57.061 26.923 19.99 0.00 0.00 2.52
4536 5840 9.545105 AATTGCAAGAAATTTCACAACATAAGA 57.455 25.926 19.99 0.06 0.00 2.10
4538 5842 9.932699 CAAATTGCAAGAAATTTCACAACATAA 57.067 25.926 19.99 6.37 37.59 1.90
4578 5882 1.617322 CATGCCAGGCTAAGATGCAT 58.383 50.000 14.15 0.00 43.01 3.96
4629 5956 1.752694 ATCGCCCCCAACCGAAATG 60.753 57.895 0.00 0.00 37.00 2.32
4641 5968 2.035321 GCTATCTATAGGAGCATCGCCC 59.965 54.545 17.72 0.00 36.20 6.13
4647 5974 4.483950 ACACCTTGCTATCTATAGGAGCA 58.516 43.478 20.12 20.12 44.25 4.26
4649 5976 5.004448 TCGACACCTTGCTATCTATAGGAG 58.996 45.833 0.00 0.00 32.22 3.69
4656 5983 2.111384 ACCATCGACACCTTGCTATCT 58.889 47.619 0.00 0.00 0.00 1.98
4671 5998 8.451748 GGTCTTAAGATTAACAAAGTCACCATC 58.548 37.037 8.75 0.00 0.00 3.51
4723 6050 2.224066 CCTATCCCTACGAGCACCTTTG 60.224 54.545 0.00 0.00 0.00 2.77
4724 6051 2.040178 CCTATCCCTACGAGCACCTTT 58.960 52.381 0.00 0.00 0.00 3.11
4727 6054 0.469518 ACCCTATCCCTACGAGCACC 60.470 60.000 0.00 0.00 0.00 5.01
4734 6061 1.543429 GCATGCACACCCTATCCCTAC 60.543 57.143 14.21 0.00 0.00 3.18
4737 6064 1.893808 CGCATGCACACCCTATCCC 60.894 63.158 19.57 0.00 0.00 3.85
4741 6068 1.079197 CAGACGCATGCACACCCTA 60.079 57.895 19.57 0.00 0.00 3.53
4754 6081 3.365465 CCCTACGAATAGATCAGCAGACG 60.365 52.174 0.00 0.00 0.00 4.18
4759 6086 2.891580 TCACCCCTACGAATAGATCAGC 59.108 50.000 0.00 0.00 0.00 4.26
4771 6098 1.374252 CACACGCACTCACCCCTAC 60.374 63.158 0.00 0.00 0.00 3.18
4783 6110 0.937699 TCGAAGCACAGTACACACGC 60.938 55.000 0.00 0.00 0.00 5.34
4784 6111 1.053048 CTCGAAGCACAGTACACACG 58.947 55.000 0.00 0.00 0.00 4.49
4838 6165 5.416947 GCCTCCAGATAAAAGTCGAAAGTA 58.583 41.667 0.00 0.00 0.00 2.24
4966 6350 3.955471 TCTGGCCATAGTTCCTCTTTTG 58.045 45.455 5.51 0.00 0.00 2.44
4974 6358 3.129287 CCACATTGTTCTGGCCATAGTTC 59.871 47.826 5.51 0.00 0.00 3.01
4983 6367 3.433306 TCCCTTACCACATTGTTCTGG 57.567 47.619 0.00 0.00 0.00 3.86
5020 6404 4.566278 CCAGTGGTGATCTCCATTTCTTCA 60.566 45.833 18.99 0.00 39.81 3.02
5035 6419 3.557903 CTGGCAGGGTCCAGTGGTG 62.558 68.421 9.54 0.55 46.59 4.17
5042 6426 2.266055 CTCGAACTGGCAGGGTCC 59.734 66.667 20.34 3.67 0.00 4.46
5047 6436 0.250234 TGATTCCCTCGAACTGGCAG 59.750 55.000 14.16 14.16 0.00 4.85
5056 6445 2.472695 TTTGGTCAGTGATTCCCTCG 57.527 50.000 0.00 0.00 0.00 4.63
5060 6449 3.445096 CCCTGATTTTGGTCAGTGATTCC 59.555 47.826 0.00 0.00 43.22 3.01
5077 6466 2.057922 GGATGCCTTCTTATCCCCTGA 58.942 52.381 0.00 0.00 37.48 3.86
5094 6483 2.158856 TGATGAATGCTCTGCTTCGGAT 60.159 45.455 0.00 0.00 0.00 4.18
5113 6502 2.975799 GGCCAAAGCGTCGGTTGA 60.976 61.111 10.91 0.00 41.24 3.18
5183 6572 0.888619 AACGACGCCTGAGAGATTCA 59.111 50.000 0.00 0.00 0.00 2.57
5236 6634 5.190726 AGTGAGGGGGAAAGATAAAGAGAAG 59.809 44.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.