Multiple sequence alignment - TraesCS6B01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G114700 chr6B 100.000 4867 0 0 1 4867 97815249 97820115 0.000000e+00 8988.0
1 TraesCS6B01G114700 chr6B 98.736 1424 11 4 1 1422 97793878 97795296 0.000000e+00 2523.0
2 TraesCS6B01G114700 chr6B 94.671 1276 41 10 3002 4258 98607157 98608424 0.000000e+00 1954.0
3 TraesCS6B01G114700 chr6B 94.353 1275 44 15 3002 4258 98451628 98452892 0.000000e+00 1930.0
4 TraesCS6B01G114700 chr6B 93.298 1328 53 20 3354 4677 98679215 98680510 0.000000e+00 1927.0
5 TraesCS6B01G114700 chr6B 93.223 1328 54 20 3354 4677 98691369 98692664 0.000000e+00 1921.0
6 TraesCS6B01G114700 chr6B 94.196 1275 46 15 3002 4258 98408426 98409690 0.000000e+00 1919.0
7 TraesCS6B01G114700 chr6B 92.922 1328 56 22 3354 4677 98667500 98668793 0.000000e+00 1897.0
8 TraesCS6B01G114700 chr6B 95.366 1187 37 8 3082 4258 98519707 98520885 0.000000e+00 1871.0
9 TraesCS6B01G114700 chr6B 82.415 1524 233 23 997 2492 98406640 98408156 0.000000e+00 1297.0
10 TraesCS6B01G114700 chr6B 82.392 1522 237 21 997 2492 98449850 98451366 0.000000e+00 1297.0
11 TraesCS6B01G114700 chr6B 82.093 1519 238 26 997 2492 98605380 98606887 0.000000e+00 1267.0
12 TraesCS6B01G114700 chr6B 81.860 1505 237 26 1011 2492 98676706 98678197 0.000000e+00 1234.0
13 TraesCS6B01G114700 chr6B 81.382 1520 245 28 997 2492 98688843 98690348 0.000000e+00 1205.0
14 TraesCS6B01G114700 chr6B 82.452 1191 187 16 1321 2492 98517620 98518807 0.000000e+00 1022.0
15 TraesCS6B01G114700 chr6B 79.381 1227 210 25 913 2114 174565966 174567174 0.000000e+00 824.0
16 TraesCS6B01G114700 chr6B 83.731 713 106 8 1788 2492 98665768 98666478 0.000000e+00 665.0
17 TraesCS6B01G114700 chr6B 76.968 1207 221 34 938 2119 11211218 11210044 1.910000e-178 636.0
18 TraesCS6B01G114700 chr6B 80.566 813 131 19 997 1793 98659252 98660053 6.970000e-168 601.0
19 TraesCS6B01G114700 chr6B 82.411 705 100 19 2155 2844 11209948 11209253 1.170000e-165 593.0
20 TraesCS6B01G114700 chr6B 91.579 380 19 4 3002 3368 98690976 98691355 3.360000e-141 512.0
21 TraesCS6B01G114700 chr6B 91.316 380 20 4 3002 3368 98667106 98667485 1.560000e-139 507.0
22 TraesCS6B01G114700 chr6B 91.316 380 20 4 3002 3368 98678824 98679203 1.560000e-139 507.0
23 TraesCS6B01G114700 chr6B 94.074 270 14 1 2573 2840 98408155 98408424 4.530000e-110 409.0
24 TraesCS6B01G114700 chr6B 94.074 270 14 1 2573 2840 98606886 98607155 4.530000e-110 409.0
25 TraesCS6B01G114700 chr6B 93.704 270 15 1 2573 2840 98518806 98519075 2.110000e-108 403.0
26 TraesCS6B01G114700 chr6B 92.910 268 13 2 2573 2840 98451365 98451626 7.640000e-103 385.0
27 TraesCS6B01G114700 chr6B 92.444 225 17 0 2573 2797 98678196 98678420 6.080000e-84 322.0
28 TraesCS6B01G114700 chr6B 92.035 226 17 1 2573 2797 98666477 98666702 2.830000e-82 316.0
29 TraesCS6B01G114700 chr6B 91.593 226 18 1 2573 2797 98690347 98690572 1.320000e-80 311.0
30 TraesCS6B01G114700 chr6B 83.680 337 41 9 997 1329 98516208 98516534 6.120000e-79 305.0
31 TraesCS6B01G114700 chr6B 96.154 130 5 0 4257 4386 98521862 98521991 3.820000e-51 213.0
32 TraesCS6B01G114700 chr6B 96.154 130 5 0 4257 4386 98539897 98540026 3.820000e-51 213.0
33 TraesCS6B01G114700 chr6B 95.420 131 6 0 4256 4386 98410670 98410800 4.940000e-50 209.0
34 TraesCS6B01G114700 chr6B 95.420 131 5 1 4256 4386 98609379 98609508 1.780000e-49 207.0
35 TraesCS6B01G114700 chr6B 95.385 130 6 0 4257 4386 98614938 98615067 1.780000e-49 207.0
36 TraesCS6B01G114700 chr6B 86.598 194 14 5 586 779 11058303 11058484 2.300000e-48 204.0
37 TraesCS6B01G114700 chr6B 89.634 164 8 4 4522 4677 98410796 98410958 2.970000e-47 200.0
38 TraesCS6B01G114700 chr6B 89.634 164 8 4 4522 4677 98453997 98454159 2.970000e-47 200.0
39 TraesCS6B01G114700 chr6B 90.728 151 10 1 4531 4677 98521999 98522149 1.070000e-46 198.0
40 TraesCS6B01G114700 chr6B 89.024 164 9 4 4522 4677 98615063 98615225 1.380000e-45 195.0
41 TraesCS6B01G114700 chr6B 88.415 164 10 4 4522 4677 98540022 98540184 6.430000e-44 189.0
42 TraesCS6B01G114700 chr6B 96.104 77 2 1 3002 3077 98519077 98519153 1.840000e-24 124.0
43 TraesCS6B01G114700 chr6B 83.333 144 12 4 4027 4164 98670643 98670780 6.620000e-24 122.0
44 TraesCS6B01G114700 chrUn 91.243 1713 70 28 2983 4677 21367752 21366102 0.000000e+00 2259.0
45 TraesCS6B01G114700 chrUn 82.919 1528 230 19 992 2492 21369785 21368262 0.000000e+00 1347.0
46 TraesCS6B01G114700 chrUn 86.043 609 63 18 3430 4024 21364813 21364213 6.870000e-178 634.0
47 TraesCS6B01G114700 chrUn 76.885 1207 222 34 938 2119 231206906 231208080 8.890000e-177 630.0
48 TraesCS6B01G114700 chrUn 93.780 418 20 5 2573 2984 21368263 21367846 1.490000e-174 623.0
49 TraesCS6B01G114700 chrUn 82.411 705 100 19 2155 2844 231208176 231208871 1.170000e-165 593.0
50 TraesCS6B01G114700 chrUn 86.131 274 28 3 2573 2836 21365083 21364810 2.220000e-73 287.0
51 TraesCS6B01G114700 chr6A 78.853 837 166 8 1287 2119 5240196 5239367 5.500000e-154 555.0
52 TraesCS6B01G114700 chr6A 77.093 681 128 14 2155 2828 5295923 5295264 7.700000e-98 368.0
53 TraesCS6B01G114700 chr6D 77.457 692 138 12 2142 2828 5911472 5910794 9.820000e-107 398.0
54 TraesCS6B01G114700 chr6D 77.698 695 120 21 2142 2829 5948226 5947560 4.570000e-105 392.0
55 TraesCS6B01G114700 chr6D 90.556 180 14 3 2838 3016 467802436 467802259 8.140000e-58 235.0
56 TraesCS6B01G114700 chr6D 92.121 165 13 0 2841 3005 351246341 351246505 2.930000e-57 233.0
57 TraesCS6B01G114700 chr7D 91.525 177 11 2 2830 3003 500775443 500775618 1.750000e-59 241.0
58 TraesCS6B01G114700 chr7D 76.946 334 68 2 1767 2091 30958303 30957970 1.080000e-41 182.0
59 TraesCS6B01G114700 chr3D 91.908 173 13 1 2830 3001 91710941 91710769 1.750000e-59 241.0
60 TraesCS6B01G114700 chr2D 91.860 172 12 2 2842 3013 387193695 387193864 6.300000e-59 239.0
61 TraesCS6B01G114700 chr4D 92.638 163 12 0 2842 3004 326382448 326382610 8.140000e-58 235.0
62 TraesCS6B01G114700 chr4D 82.759 203 22 7 586 787 278325659 278325849 8.380000e-38 169.0
63 TraesCS6B01G114700 chr5A 92.593 162 12 0 2842 3003 320214405 320214244 2.930000e-57 233.0
64 TraesCS6B01G114700 chr5A 86.275 204 13 4 586 781 3953857 3954053 1.780000e-49 207.0
65 TraesCS6B01G114700 chr5B 91.566 166 14 0 2839 3004 358271995 358271830 3.790000e-56 230.0
66 TraesCS6B01G114700 chr5B 78.027 223 28 13 586 798 231404527 231404316 2.380000e-23 121.0
67 TraesCS6B01G114700 chr7B 86.124 209 12 5 586 785 409013975 409013775 4.940000e-50 209.0
68 TraesCS6B01G114700 chr1B 86.124 209 12 6 586 784 638037307 638037106 4.940000e-50 209.0
69 TraesCS6B01G114700 chr1B 86.224 196 15 6 586 781 656519399 656519216 8.260000e-48 202.0
70 TraesCS6B01G114700 chr2B 84.615 208 16 6 586 784 637449974 637449774 4.970000e-45 193.0
71 TraesCS6B01G114700 chr2B 91.589 107 9 0 1829 1935 694748436 694748330 1.090000e-31 148.0
72 TraesCS6B01G114700 chr2B 91.589 107 9 0 1829 1935 694777142 694777036 1.090000e-31 148.0
73 TraesCS6B01G114700 chr1D 84.925 199 18 6 586 784 411747998 411747812 1.790000e-44 191.0
74 TraesCS6B01G114700 chr7A 79.630 216 19 6 585 792 629775840 629776038 1.100000e-26 132.0
75 TraesCS6B01G114700 chr4A 93.023 43 3 0 749 791 638137131 638137089 4.070000e-06 63.9
76 TraesCS6B01G114700 chr3A 93.023 43 3 0 749 791 618449027 618449069 4.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G114700 chr6B 97815249 97820115 4866 False 8988.000000 8988 100.000000 1 4867 1 chr6B.!!$F3 4866
1 TraesCS6B01G114700 chr6B 97793878 97795296 1418 False 2523.000000 2523 98.736000 1 1422 1 chr6B.!!$F2 1421
2 TraesCS6B01G114700 chr6B 98676706 98680510 3804 False 997.500000 1927 89.729500 1011 4677 4 chr6B.!!$F13 3666
3 TraesCS6B01G114700 chr6B 98688843 98692664 3821 False 987.250000 1921 89.444250 997 4677 4 chr6B.!!$F14 3680
4 TraesCS6B01G114700 chr6B 98605380 98609508 4128 False 959.250000 1954 91.564500 997 4386 4 chr6B.!!$F10 3389
5 TraesCS6B01G114700 chr6B 98449850 98454159 4309 False 953.000000 1930 89.822250 997 4677 4 chr6B.!!$F7 3680
6 TraesCS6B01G114700 chr6B 174565966 174567174 1208 False 824.000000 824 79.381000 913 2114 1 chr6B.!!$F5 1201
7 TraesCS6B01G114700 chr6B 98406640 98410958 4318 False 806.800000 1919 91.147800 997 4677 5 chr6B.!!$F6 3680
8 TraesCS6B01G114700 chr6B 98665768 98670780 5012 False 701.400000 1897 88.667400 1788 4677 5 chr6B.!!$F12 2889
9 TraesCS6B01G114700 chr6B 11209253 11211218 1965 True 614.500000 636 79.689500 938 2844 2 chr6B.!!$R1 1906
10 TraesCS6B01G114700 chr6B 98659252 98660053 801 False 601.000000 601 80.566000 997 1793 1 chr6B.!!$F4 796
11 TraesCS6B01G114700 chr6B 98516208 98522149 5941 False 590.857143 1871 91.169714 997 4677 7 chr6B.!!$F8 3680
12 TraesCS6B01G114700 chrUn 21364213 21369785 5572 True 1030.000000 2259 88.023200 992 4677 5 chrUn.!!$R1 3685
13 TraesCS6B01G114700 chrUn 231206906 231208871 1965 False 611.500000 630 79.648000 938 2844 2 chrUn.!!$F1 1906
14 TraesCS6B01G114700 chr6A 5239367 5240196 829 True 555.000000 555 78.853000 1287 2119 1 chr6A.!!$R1 832
15 TraesCS6B01G114700 chr6A 5295264 5295923 659 True 368.000000 368 77.093000 2155 2828 1 chr6A.!!$R2 673
16 TraesCS6B01G114700 chr6D 5910794 5911472 678 True 398.000000 398 77.457000 2142 2828 1 chr6D.!!$R1 686
17 TraesCS6B01G114700 chr6D 5947560 5948226 666 True 392.000000 392 77.698000 2142 2829 1 chr6D.!!$R2 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 823 1.456705 AGGGGCGGTTGCTTCAAAA 60.457 52.632 0.00 0.0 42.25 2.44 F
2545 3773 0.107017 CATTTCTCATCCACGGGCCT 60.107 55.000 0.84 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2571 3799 0.032017 AAGCTCGTACCTGGGATCCT 60.032 55.0 12.58 0.00 0.00 3.24 R
4393 7957 0.110644 GAACGAAAGCCTTGCAGTCG 60.111 55.0 9.07 9.07 40.89 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 196 6.147864 TGTAAAAATTTCAGTGCTTCTGCT 57.852 33.333 0.00 0.00 43.32 4.24
819 821 2.597217 CAGGGGCGGTTGCTTCAA 60.597 61.111 0.00 0.00 42.25 2.69
820 822 2.197324 AGGGGCGGTTGCTTCAAA 59.803 55.556 0.00 0.00 42.25 2.69
821 823 1.456705 AGGGGCGGTTGCTTCAAAA 60.457 52.632 0.00 0.00 42.25 2.44
894 896 4.141824 CCTCCAGTCCTCCTCAAGATAAAC 60.142 50.000 0.00 0.00 0.00 2.01
1252 1266 2.093973 AGTATCACCGACTCCTGCAAAG 60.094 50.000 0.00 0.00 0.00 2.77
1420 2567 1.523032 CTCATCGCTGCCTGCATCA 60.523 57.895 0.00 0.00 43.06 3.07
1446 2593 2.668632 GACCACGGCATCAAGGGA 59.331 61.111 0.00 0.00 0.00 4.20
1528 2675 2.285368 CTAGGCACCCTGACCCCA 60.285 66.667 0.00 0.00 34.61 4.96
1530 2677 1.915078 CTAGGCACCCTGACCCCAAG 61.915 65.000 0.00 0.00 34.61 3.61
1536 2683 3.399181 CCTGACCCCAAGCGCCTA 61.399 66.667 2.29 0.00 0.00 3.93
1550 2697 2.423898 GCCTAGTCTACGCCTGGCA 61.424 63.158 20.29 0.00 40.04 4.92
1551 2698 1.956629 GCCTAGTCTACGCCTGGCAA 61.957 60.000 20.29 4.93 40.04 4.52
1554 2701 2.271800 CTAGTCTACGCCTGGCAAAAG 58.728 52.381 20.29 12.14 0.00 2.27
1562 2709 0.604578 GCCTGGCAAAAGATCTGCAA 59.395 50.000 15.17 0.00 41.78 4.08
1563 2710 1.206371 GCCTGGCAAAAGATCTGCAAT 59.794 47.619 15.17 0.00 41.78 3.56
1564 2711 2.354403 GCCTGGCAAAAGATCTGCAATT 60.354 45.455 15.17 0.00 41.78 2.32
1582 2729 2.825836 GCATGGAAGACGCCCTGG 60.826 66.667 0.00 0.00 0.00 4.45
1594 2741 3.333219 CCCTGGGCCTGCTTGAGA 61.333 66.667 4.53 0.00 0.00 3.27
1597 2744 1.605992 CTGGGCCTGCTTGAGATGA 59.394 57.895 4.53 0.00 0.00 2.92
1602 2749 1.595466 GCCTGCTTGAGATGATCCAG 58.405 55.000 0.00 0.00 0.00 3.86
1609 2768 3.623203 GCTTGAGATGATCCAGGAACCAA 60.623 47.826 0.00 0.00 0.00 3.67
1633 2792 0.879400 CATCTCGCAGGTCATCAGGC 60.879 60.000 0.00 0.00 0.00 4.85
1675 2837 4.778143 GACCGCCGGCCAGTGAAT 62.778 66.667 23.46 0.00 0.00 2.57
1722 2884 2.029844 AGAAGCTTCTGTTCGCCGC 61.030 57.895 27.96 0.00 35.89 6.53
1739 2901 4.697756 CCGTCCCCGAAGCTTGCA 62.698 66.667 2.10 0.00 35.63 4.08
1740 2902 2.668212 CGTCCCCGAAGCTTGCAA 60.668 61.111 2.10 0.00 35.63 4.08
1759 2921 0.392461 ACAACCGCACACTCACTTGT 60.392 50.000 0.00 0.00 0.00 3.16
1782 2944 3.680786 CGGACGCTCCAGGACACA 61.681 66.667 5.15 0.00 35.91 3.72
1797 2959 3.814005 GACACAATCCACGGGTACTAT 57.186 47.619 0.00 0.00 0.00 2.12
1878 3041 3.717294 CACTGCTACGGCCCCCTT 61.717 66.667 0.00 0.00 37.74 3.95
1958 3121 2.223203 CCATGAAACTCGAGCTGAATGC 60.223 50.000 13.61 0.00 43.29 3.56
2022 3185 1.381327 CGGTCTGGCCTCCTTCCTA 60.381 63.158 3.32 0.00 34.25 2.94
2041 3204 3.427425 GCACGCGTTACCATGGCA 61.427 61.111 10.22 0.00 0.00 4.92
2062 3225 5.413499 GCATTAATTTCCATCAAGCTGTGT 58.587 37.500 0.00 0.00 0.00 3.72
2120 3283 3.044156 CTGATCCCTTCCTTGATCCTGA 58.956 50.000 0.00 0.00 37.23 3.86
2122 3285 4.050037 TGATCCCTTCCTTGATCCTGATT 58.950 43.478 0.00 0.00 37.23 2.57
2131 3354 3.549794 CTTGATCCTGATTCCCACCTTC 58.450 50.000 0.00 0.00 0.00 3.46
2132 3355 1.846439 TGATCCTGATTCCCACCTTCC 59.154 52.381 0.00 0.00 0.00 3.46
2134 3357 0.121197 TCCTGATTCCCACCTTCCCT 59.879 55.000 0.00 0.00 0.00 4.20
2135 3358 1.368203 TCCTGATTCCCACCTTCCCTA 59.632 52.381 0.00 0.00 0.00 3.53
2136 3359 2.021042 TCCTGATTCCCACCTTCCCTAT 60.021 50.000 0.00 0.00 0.00 2.57
2138 3361 2.107204 CTGATTCCCACCTTCCCTATGG 59.893 54.545 0.00 0.00 0.00 2.74
2144 3367 1.916181 CCACCTTCCCTATGGTCAAGT 59.084 52.381 0.00 0.00 33.75 3.16
2149 3372 4.292306 ACCTTCCCTATGGTCAAGTTCAAT 59.708 41.667 0.00 0.00 29.18 2.57
2153 3376 3.355378 CCTATGGTCAAGTTCAATGCCA 58.645 45.455 0.00 0.00 0.00 4.92
2182 3405 0.960861 CGGTCCCAAAGAAGCCTTCC 60.961 60.000 0.00 0.00 0.00 3.46
2233 3456 1.692519 ACCCAGACGCTCAAGTAAAGT 59.307 47.619 0.00 0.00 0.00 2.66
2254 3477 3.936372 TTCTCACTTCGTGTAAGGAGG 57.064 47.619 0.00 0.00 39.73 4.30
2263 3486 1.267121 GTGTAAGGAGGTGCTGGAGA 58.733 55.000 0.00 0.00 0.00 3.71
2293 3516 2.765250 TTTGCTGCGTCGGGACTCTC 62.765 60.000 0.00 0.00 0.00 3.20
2305 3528 1.261480 GGACTCTCACAAGCTCTCCA 58.739 55.000 0.00 0.00 0.00 3.86
2382 3607 1.830477 GACTCTGAGATGGCACTTCCT 59.170 52.381 12.44 0.00 35.26 3.36
2424 3649 1.338136 CCCTTGTGGACCTAGCGGAT 61.338 60.000 0.00 0.00 35.39 4.18
2458 3683 3.858638 AGTCTCCAAGGGGGTCAATATTT 59.141 43.478 0.00 0.00 38.11 1.40
2508 3733 1.280998 GGGGTAGGTTTGCTCTGCTTA 59.719 52.381 0.00 0.00 0.00 3.09
2515 3740 3.891366 AGGTTTGCTCTGCTTATTGTTGT 59.109 39.130 0.00 0.00 0.00 3.32
2523 3751 6.095377 GCTCTGCTTATTGTTGTTTATTGCT 58.905 36.000 0.00 0.00 0.00 3.91
2540 3768 4.944962 TTGCTAACATTTCTCATCCACG 57.055 40.909 0.00 0.00 0.00 4.94
2544 3772 0.394352 ACATTTCTCATCCACGGGCC 60.394 55.000 0.00 0.00 0.00 5.80
2545 3773 0.107017 CATTTCTCATCCACGGGCCT 60.107 55.000 0.84 0.00 0.00 5.19
2554 3782 2.203070 CACGGGCCTATGCTCACC 60.203 66.667 0.84 0.00 38.12 4.02
2555 3783 2.687200 ACGGGCCTATGCTCACCA 60.687 61.111 0.84 0.00 38.12 4.17
2556 3784 2.297895 ACGGGCCTATGCTCACCAA 61.298 57.895 0.84 0.00 38.12 3.67
2557 3785 1.077787 CGGGCCTATGCTCACCAAA 60.078 57.895 0.84 0.00 38.12 3.28
2558 3786 0.466189 CGGGCCTATGCTCACCAAAT 60.466 55.000 0.84 0.00 38.12 2.32
2559 3787 1.035139 GGGCCTATGCTCACCAAATG 58.965 55.000 0.84 0.00 38.13 2.32
2560 3788 1.686115 GGGCCTATGCTCACCAAATGT 60.686 52.381 0.84 0.00 38.13 2.71
2561 3789 1.406539 GGCCTATGCTCACCAAATGTG 59.593 52.381 0.00 0.00 46.88 3.21
2562 3790 2.094675 GCCTATGCTCACCAAATGTGT 58.905 47.619 0.00 0.00 45.61 3.72
2563 3791 2.098117 GCCTATGCTCACCAAATGTGTC 59.902 50.000 0.00 0.00 45.61 3.67
2564 3792 2.352651 CCTATGCTCACCAAATGTGTCG 59.647 50.000 0.00 0.00 45.61 4.35
2565 3793 2.183478 ATGCTCACCAAATGTGTCGA 57.817 45.000 0.00 0.00 45.61 4.20
2566 3794 1.225855 TGCTCACCAAATGTGTCGAC 58.774 50.000 9.11 9.11 45.61 4.20
2567 3795 1.202639 TGCTCACCAAATGTGTCGACT 60.203 47.619 17.92 0.00 45.61 4.18
2568 3796 1.873591 GCTCACCAAATGTGTCGACTT 59.126 47.619 17.92 0.00 45.61 3.01
2569 3797 3.064207 GCTCACCAAATGTGTCGACTTA 58.936 45.455 17.92 5.93 45.61 2.24
2570 3798 3.120649 GCTCACCAAATGTGTCGACTTAC 60.121 47.826 17.92 8.13 45.61 2.34
2571 3799 4.055360 CTCACCAAATGTGTCGACTTACA 58.945 43.478 17.92 14.00 45.61 2.41
2572 3800 4.055360 TCACCAAATGTGTCGACTTACAG 58.945 43.478 17.92 4.51 45.61 2.74
2581 3890 1.409427 GTCGACTTACAGGATCCCAGG 59.591 57.143 8.55 0.57 0.00 4.45
2614 3923 5.351189 TCATACGATTTGTGGTGTGAATGAG 59.649 40.000 0.00 0.00 32.42 2.90
2620 3929 0.889186 GTGGTGTGAATGAGCGGGTT 60.889 55.000 0.00 0.00 0.00 4.11
2661 3976 3.958147 CTCATGACCGTGGCCGCTT 62.958 63.158 15.69 0.00 0.00 4.68
2849 4535 9.886132 TTTTTCAAGTATCTTATGTACTCCCTC 57.114 33.333 0.00 0.00 31.44 4.30
2850 4536 7.598759 TTCAAGTATCTTATGTACTCCCTCC 57.401 40.000 0.00 0.00 31.44 4.30
2851 4537 5.768662 TCAAGTATCTTATGTACTCCCTCCG 59.231 44.000 0.00 0.00 31.44 4.63
2852 4538 5.321934 AGTATCTTATGTACTCCCTCCGT 57.678 43.478 0.00 0.00 0.00 4.69
2853 4539 5.703310 AGTATCTTATGTACTCCCTCCGTT 58.297 41.667 0.00 0.00 0.00 4.44
2854 4540 5.769162 AGTATCTTATGTACTCCCTCCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
2855 4541 3.294214 TCTTATGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2856 4542 3.053095 TCTTATGTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
2857 4543 4.166725 TCTTATGTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
2858 4544 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2859 4545 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2860 4546 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2861 4547 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2862 4548 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2863 4549 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2864 4550 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2865 4551 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2866 4552 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2867 4553 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2868 4554 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2869 4555 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2870 4556 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2871 4557 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2872 4558 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2918 4604 9.696572 ACATACGGATGTATATAGACATACCTT 57.303 33.333 12.79 12.58 44.77 3.50
2919 4605 9.952188 CATACGGATGTATATAGACATACCTTG 57.048 37.037 15.52 8.03 40.18 3.61
2920 4606 7.406031 ACGGATGTATATAGACATACCTTGG 57.594 40.000 15.52 5.66 40.18 3.61
2921 4607 7.179966 ACGGATGTATATAGACATACCTTGGA 58.820 38.462 15.52 0.00 40.18 3.53
2922 4608 7.339721 ACGGATGTATATAGACATACCTTGGAG 59.660 40.741 15.52 4.72 40.18 3.86
2923 4609 7.339721 CGGATGTATATAGACATACCTTGGAGT 59.660 40.741 15.52 0.00 40.18 3.85
2924 4610 8.470805 GGATGTATATAGACATACCTTGGAGTG 58.529 40.741 12.82 0.00 40.18 3.51
2925 4611 8.958060 ATGTATATAGACATACCTTGGAGTGT 57.042 34.615 11.24 0.00 38.29 3.55
2927 4613 9.516546 TGTATATAGACATACCTTGGAGTGTAG 57.483 37.037 0.00 0.00 31.52 2.74
2928 4614 9.736414 GTATATAGACATACCTTGGAGTGTAGA 57.264 37.037 0.00 0.00 0.00 2.59
2930 4616 9.830186 ATATAGACATACCTTGGAGTGTAGATT 57.170 33.333 0.00 0.00 0.00 2.40
2931 4617 6.472686 AGACATACCTTGGAGTGTAGATTC 57.527 41.667 0.00 0.00 0.00 2.52
2932 4618 5.958380 AGACATACCTTGGAGTGTAGATTCA 59.042 40.000 0.00 0.00 0.00 2.57
2933 4619 5.978814 ACATACCTTGGAGTGTAGATTCAC 58.021 41.667 0.00 0.00 38.46 3.18
2944 4630 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2945 4631 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
2946 4632 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2947 4633 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
2948 4634 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2949 4635 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2950 4636 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2951 4637 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2952 4638 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
2953 4639 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2954 4640 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
2955 4641 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
2956 4642 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
2957 4643 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
2958 4644 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
2959 4645 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
2960 4646 7.928167 TCATTTTGCTCTGTATGTAGTCCATAG 59.072 37.037 0.00 0.00 36.71 2.23
2961 4647 6.791867 TTTGCTCTGTATGTAGTCCATAGT 57.208 37.500 0.00 0.00 36.71 2.12
2962 4648 7.891498 TTTGCTCTGTATGTAGTCCATAGTA 57.109 36.000 0.00 0.00 36.71 1.82
2963 4649 7.511959 TTGCTCTGTATGTAGTCCATAGTAG 57.488 40.000 0.00 0.00 36.71 2.57
2964 4650 6.838382 TGCTCTGTATGTAGTCCATAGTAGA 58.162 40.000 0.00 0.00 36.71 2.59
2965 4651 7.287810 TGCTCTGTATGTAGTCCATAGTAGAA 58.712 38.462 0.00 0.00 36.71 2.10
2966 4652 7.945109 TGCTCTGTATGTAGTCCATAGTAGAAT 59.055 37.037 0.00 0.00 36.71 2.40
2967 4653 8.455682 GCTCTGTATGTAGTCCATAGTAGAATC 58.544 40.741 0.00 0.00 36.71 2.52
2968 4654 9.733556 CTCTGTATGTAGTCCATAGTAGAATCT 57.266 37.037 0.00 0.00 36.71 2.40
2969 4655 9.727859 TCTGTATGTAGTCCATAGTAGAATCTC 57.272 37.037 0.00 0.00 36.71 2.75
2970 4656 9.733556 CTGTATGTAGTCCATAGTAGAATCTCT 57.266 37.037 0.00 0.00 36.71 3.10
2997 4683 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2998 4684 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2999 4685 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3000 4686 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3120 5627 3.495331 TGGTGCATCTTTACCACAACAT 58.505 40.909 0.00 0.00 41.80 2.71
3220 5733 6.396829 AGGAAGTGATGAAAAAGGAAACAG 57.603 37.500 0.00 0.00 0.00 3.16
3232 5745 3.126001 AGGAAACAGAAGTCGAATGCA 57.874 42.857 0.00 0.00 0.00 3.96
3351 5864 1.019673 CATCGTGCTCATTTCCCAGG 58.980 55.000 0.00 0.00 0.00 4.45
3355 5868 0.529378 GTGCTCATTTCCCAGGCAAG 59.471 55.000 0.00 0.00 34.65 4.01
3396 5966 2.747177 TCAACTAGGACGGTCATCCAT 58.253 47.619 10.76 0.00 41.73 3.41
3454 6024 1.268899 GCATTCTATGGCTCCATGCAC 59.731 52.381 11.49 0.00 45.15 4.57
3617 6187 4.265073 GGACTAGAATTGTGCATCCAGTT 58.735 43.478 0.00 0.00 0.00 3.16
3624 6194 2.106477 TGTGCATCCAGTTGCGATAA 57.894 45.000 0.00 0.00 45.77 1.75
3790 6360 2.916527 GATGGGGTGGATGGGCACAG 62.917 65.000 0.00 0.00 0.00 3.66
3816 6386 9.178758 GGAATAAGTTTGATAATGTGAGTTCCT 57.821 33.333 0.00 0.00 0.00 3.36
3820 6390 8.463930 AAGTTTGATAATGTGAGTTCCTTGAA 57.536 30.769 0.00 0.00 0.00 2.69
3821 6391 8.103948 AGTTTGATAATGTGAGTTCCTTGAAG 57.896 34.615 0.00 0.00 0.00 3.02
3918 6488 6.509997 GCCAATGCAAGACAAGTTAAAGTTTG 60.510 38.462 0.00 0.00 37.47 2.93
4048 6625 5.224888 CAGCTGATTGTGTAATTGCAGTTT 58.775 37.500 8.42 0.00 32.30 2.66
4049 6626 6.380995 CAGCTGATTGTGTAATTGCAGTTTA 58.619 36.000 8.42 0.00 32.30 2.01
4053 6630 7.164171 GCTGATTGTGTAATTGCAGTTTATACG 59.836 37.037 0.00 0.00 0.00 3.06
4144 6726 5.178797 GCTTTGAGATGTACTAAGCCTGAA 58.821 41.667 0.00 0.00 39.06 3.02
4212 6794 0.178992 TGGGCTGGGCTGTATATTGC 60.179 55.000 0.00 0.00 0.00 3.56
4240 6822 7.334671 GGCAAGCTGTAAATATATAGGGTCTTC 59.665 40.741 0.00 0.00 0.00 2.87
4254 7817 5.948742 AGGGTCTTCTATTCTTCTTCCTG 57.051 43.478 0.00 0.00 0.00 3.86
4319 7883 2.542178 TGCGCTACACACAAACTTACAG 59.458 45.455 9.73 0.00 0.00 2.74
4387 7951 4.324991 GGAGAAACCACGGGCCGT 62.325 66.667 28.83 28.83 42.36 5.68
4403 7967 3.642755 GTGGTGACGACTGCAAGG 58.357 61.111 0.00 0.00 39.30 3.61
4404 7968 2.280797 TGGTGACGACTGCAAGGC 60.281 61.111 0.00 0.00 40.17 4.35
4405 7969 2.031163 GGTGACGACTGCAAGGCT 59.969 61.111 0.00 0.00 42.99 4.58
4406 7970 1.598130 GGTGACGACTGCAAGGCTT 60.598 57.895 0.00 0.00 42.99 4.35
4407 7971 1.166531 GGTGACGACTGCAAGGCTTT 61.167 55.000 0.00 0.00 42.99 3.51
4408 7972 0.235926 GTGACGACTGCAAGGCTTTC 59.764 55.000 0.00 0.00 42.99 2.62
4409 7973 1.221466 TGACGACTGCAAGGCTTTCG 61.221 55.000 15.39 15.39 42.99 3.46
4410 7974 1.222115 GACGACTGCAAGGCTTTCGT 61.222 55.000 20.87 20.87 42.99 3.85
4411 7975 0.814010 ACGACTGCAAGGCTTTCGTT 60.814 50.000 16.55 4.28 42.99 3.85
4412 7976 0.110644 CGACTGCAAGGCTTTCGTTC 60.111 55.000 10.16 0.27 42.99 3.95
4413 7977 0.944386 GACTGCAAGGCTTTCGTTCA 59.056 50.000 0.00 0.00 40.68 3.18
4414 7978 0.947244 ACTGCAAGGCTTTCGTTCAG 59.053 50.000 0.00 3.09 39.30 3.02
4415 7979 0.947244 CTGCAAGGCTTTCGTTCAGT 59.053 50.000 0.00 0.00 0.00 3.41
4416 7980 0.662619 TGCAAGGCTTTCGTTCAGTG 59.337 50.000 0.00 0.00 0.00 3.66
4417 7981 0.661483 GCAAGGCTTTCGTTCAGTGC 60.661 55.000 0.00 0.00 0.00 4.40
4418 7982 0.947244 CAAGGCTTTCGTTCAGTGCT 59.053 50.000 0.00 0.00 0.00 4.40
4429 7993 3.559024 CAGTGCTCGACTGCAAGG 58.441 61.111 0.32 0.00 45.72 3.61
4438 8002 0.110644 CGACTGCAAGGCTTTCGTTC 60.111 55.000 10.16 0.27 42.99 3.95
4441 8005 0.947244 CTGCAAGGCTTTCGTTCAGT 59.053 50.000 0.00 0.00 0.00 3.41
4448 8012 0.514691 GCTTTCGTTCAGTGCTCTGG 59.485 55.000 15.39 0.44 41.59 3.86
4455 8019 1.548357 TTCAGTGCTCTGGCCTCCTC 61.548 60.000 15.39 0.00 41.59 3.71
4456 8020 1.988956 CAGTGCTCTGGCCTCCTCT 60.989 63.158 3.32 0.00 37.97 3.69
4496 8060 4.856607 GCGCTCCTCCCTCGAACG 62.857 72.222 0.00 0.00 0.00 3.95
4554 8121 0.472734 CATCCTCCTCCCCGGATCTT 60.473 60.000 0.73 0.00 42.12 2.40
4560 8127 1.764054 CTCCCCGGATCTTGCCTCT 60.764 63.158 0.73 0.00 0.00 3.69
4623 8190 0.687757 TCATCCTCCTCTTCCACCCG 60.688 60.000 0.00 0.00 0.00 5.28
4660 8231 1.687563 TGATGATGCCTTCCATGCTG 58.312 50.000 0.00 0.00 33.29 4.41
4677 8248 2.245532 GCACACACTGACGAACGC 59.754 61.111 0.00 0.00 0.00 4.84
4678 8249 2.521771 GCACACACTGACGAACGCA 61.522 57.895 0.00 0.00 0.00 5.24
4679 8250 1.831389 GCACACACTGACGAACGCAT 61.831 55.000 0.00 0.00 0.00 4.73
4680 8251 0.111134 CACACACTGACGAACGCATG 60.111 55.000 0.00 0.00 0.00 4.06
4681 8252 0.529773 ACACACTGACGAACGCATGT 60.530 50.000 0.00 0.00 0.00 3.21
4682 8253 1.269361 ACACACTGACGAACGCATGTA 60.269 47.619 0.00 0.00 0.00 2.29
4683 8254 1.124297 CACACTGACGAACGCATGTAC 59.876 52.381 0.00 0.00 0.00 2.90
4685 8256 1.386748 CACTGACGAACGCATGTACAG 59.613 52.381 0.33 0.00 0.00 2.74
4688 8259 2.923655 CTGACGAACGCATGTACAGATT 59.076 45.455 0.33 0.00 0.00 2.40
4689 8260 2.921121 TGACGAACGCATGTACAGATTC 59.079 45.455 0.33 1.79 0.00 2.52
4690 8261 2.921121 GACGAACGCATGTACAGATTCA 59.079 45.455 0.33 0.00 0.00 2.57
4691 8262 3.322369 ACGAACGCATGTACAGATTCAA 58.678 40.909 0.33 0.00 0.00 2.69
4692 8263 3.367932 ACGAACGCATGTACAGATTCAAG 59.632 43.478 0.33 0.00 0.00 3.02
4693 8264 3.612423 CGAACGCATGTACAGATTCAAGA 59.388 43.478 0.33 0.00 0.00 3.02
4695 8266 5.220472 CGAACGCATGTACAGATTCAAGAAT 60.220 40.000 0.33 0.00 0.00 2.40
4696 8267 6.019881 CGAACGCATGTACAGATTCAAGAATA 60.020 38.462 0.33 0.00 0.00 1.75
4698 8269 7.792374 ACGCATGTACAGATTCAAGAATAAT 57.208 32.000 0.33 0.00 0.00 1.28
4699 8270 8.213518 ACGCATGTACAGATTCAAGAATAATT 57.786 30.769 0.33 0.00 0.00 1.40
4700 8271 8.338259 ACGCATGTACAGATTCAAGAATAATTC 58.662 33.333 0.33 0.00 0.00 2.17
4702 8273 9.443283 GCATGTACAGATTCAAGAATAATTCAC 57.557 33.333 0.33 0.00 0.00 3.18
4705 8276 8.946085 TGTACAGATTCAAGAATAATTCACACC 58.054 33.333 0.00 0.00 0.00 4.16
4706 8277 9.167311 GTACAGATTCAAGAATAATTCACACCT 57.833 33.333 0.00 0.00 0.00 4.00
4707 8278 8.048534 ACAGATTCAAGAATAATTCACACCTG 57.951 34.615 0.00 0.00 0.00 4.00
4708 8279 7.121759 ACAGATTCAAGAATAATTCACACCTGG 59.878 37.037 0.00 0.00 0.00 4.45
4709 8280 7.337689 CAGATTCAAGAATAATTCACACCTGGA 59.662 37.037 0.00 0.00 0.00 3.86
4711 8282 7.395190 TTCAAGAATAATTCACACCTGGATG 57.605 36.000 0.00 0.00 0.00 3.51
4713 8284 4.210331 AGAATAATTCACACCTGGATGGC 58.790 43.478 0.00 0.00 40.22 4.40
4716 8287 1.771565 ATTCACACCTGGATGGCATG 58.228 50.000 3.81 0.00 40.22 4.06
4717 8288 0.405198 TTCACACCTGGATGGCATGT 59.595 50.000 3.81 0.00 40.22 3.21
4718 8289 0.405198 TCACACCTGGATGGCATGTT 59.595 50.000 3.81 0.00 40.22 2.71
4719 8290 1.203038 TCACACCTGGATGGCATGTTT 60.203 47.619 3.81 0.00 40.22 2.83
4720 8291 1.203052 CACACCTGGATGGCATGTTTC 59.797 52.381 3.81 0.00 40.22 2.78
4721 8292 1.076024 ACACCTGGATGGCATGTTTCT 59.924 47.619 3.81 0.00 40.22 2.52
4727 9626 4.202080 CCTGGATGGCATGTTTCTGTATTG 60.202 45.833 3.81 0.00 0.00 1.90
4728 9627 3.130869 TGGATGGCATGTTTCTGTATTGC 59.869 43.478 3.81 0.00 0.00 3.56
4730 9629 4.202182 GGATGGCATGTTTCTGTATTGCAT 60.202 41.667 3.81 0.00 35.04 3.96
4731 9630 4.112716 TGGCATGTTTCTGTATTGCATG 57.887 40.909 0.00 0.00 39.68 4.06
4735 9634 5.461078 GGCATGTTTCTGTATTGCATGATTC 59.539 40.000 0.00 0.00 39.21 2.52
4737 9636 6.755141 GCATGTTTCTGTATTGCATGATTCTT 59.245 34.615 0.00 0.00 39.21 2.52
4738 9637 7.277098 GCATGTTTCTGTATTGCATGATTCTTT 59.723 33.333 0.00 0.00 39.21 2.52
4740 9639 7.884257 TGTTTCTGTATTGCATGATTCTTTCA 58.116 30.769 0.00 0.00 39.12 2.69
4793 9692 8.633075 ATTATGTTAAATTCATTTCACTGCGG 57.367 30.769 0.00 0.00 0.00 5.69
4794 9693 4.804108 TGTTAAATTCATTTCACTGCGGG 58.196 39.130 0.00 0.00 0.00 6.13
4795 9694 4.520874 TGTTAAATTCATTTCACTGCGGGA 59.479 37.500 0.00 0.00 0.00 5.14
4797 9696 4.806640 AAATTCATTTCACTGCGGGAAT 57.193 36.364 0.00 0.00 0.00 3.01
4798 9697 5.913137 AAATTCATTTCACTGCGGGAATA 57.087 34.783 0.00 0.00 0.00 1.75
4799 9698 4.900635 ATTCATTTCACTGCGGGAATAC 57.099 40.909 0.00 0.00 0.00 1.89
4800 9699 3.342377 TCATTTCACTGCGGGAATACA 57.658 42.857 0.00 0.00 0.00 2.29
4801 9700 3.884895 TCATTTCACTGCGGGAATACAT 58.115 40.909 0.00 0.00 0.00 2.29
4802 9701 3.627123 TCATTTCACTGCGGGAATACATG 59.373 43.478 0.00 0.00 0.00 3.21
4803 9702 2.779755 TTCACTGCGGGAATACATGT 57.220 45.000 2.69 2.69 0.00 3.21
4804 9703 2.779755 TCACTGCGGGAATACATGTT 57.220 45.000 2.30 0.00 0.00 2.71
4805 9704 3.066291 TCACTGCGGGAATACATGTTT 57.934 42.857 2.30 0.00 0.00 2.83
4808 9707 3.190327 CACTGCGGGAATACATGTTTCAA 59.810 43.478 2.30 0.00 0.00 2.69
4809 9708 4.016444 ACTGCGGGAATACATGTTTCAAT 58.984 39.130 2.30 0.00 0.00 2.57
4810 9709 4.462483 ACTGCGGGAATACATGTTTCAATT 59.538 37.500 2.30 0.00 0.00 2.32
4811 9710 5.650266 ACTGCGGGAATACATGTTTCAATTA 59.350 36.000 2.30 0.00 0.00 1.40
4812 9711 6.151985 ACTGCGGGAATACATGTTTCAATTAA 59.848 34.615 2.30 0.00 0.00 1.40
4813 9712 7.106439 TGCGGGAATACATGTTTCAATTAAT 57.894 32.000 2.30 0.00 0.00 1.40
4814 9713 7.551585 TGCGGGAATACATGTTTCAATTAATT 58.448 30.769 2.30 0.00 0.00 1.40
4815 9714 7.704472 TGCGGGAATACATGTTTCAATTAATTC 59.296 33.333 2.30 4.41 0.00 2.17
4817 9716 9.748708 CGGGAATACATGTTTCAATTAATTCAT 57.251 29.630 2.30 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1521 2668 2.606519 ACTAGGCGCTTGGGGTCA 60.607 61.111 7.64 0.00 0.00 4.02
1562 2709 1.033746 CAGGGCGTCTTCCATGCAAT 61.034 55.000 0.00 0.00 39.02 3.56
1563 2710 1.675310 CAGGGCGTCTTCCATGCAA 60.675 57.895 0.00 0.00 39.02 4.08
1564 2711 2.046023 CAGGGCGTCTTCCATGCA 60.046 61.111 0.00 0.00 39.02 3.96
1582 2729 0.182061 TGGATCATCTCAAGCAGGCC 59.818 55.000 0.00 0.00 0.00 5.19
1590 2737 2.092753 GCTTGGTTCCTGGATCATCTCA 60.093 50.000 0.00 0.00 0.00 3.27
1593 2740 1.685148 GGCTTGGTTCCTGGATCATC 58.315 55.000 0.00 0.00 0.00 2.92
1594 2741 0.107017 CGGCTTGGTTCCTGGATCAT 60.107 55.000 0.00 0.00 0.00 2.45
1597 2744 2.044946 GCGGCTTGGTTCCTGGAT 60.045 61.111 0.00 0.00 0.00 3.41
1602 2749 2.464459 CGAGATGCGGCTTGGTTCC 61.464 63.158 0.00 0.00 36.03 3.62
1633 2792 1.940613 GGTAACCATAAAGGCGAGCTG 59.059 52.381 0.00 0.00 43.14 4.24
1643 2802 1.113788 CGGTCCCTCGGTAACCATAA 58.886 55.000 5.82 0.00 32.35 1.90
1669 2831 1.361668 CGCCGCACAGCTAATTCACT 61.362 55.000 0.00 0.00 0.00 3.41
1697 2859 4.273811 CAGAAGCTTCTGCGAGCA 57.726 55.556 36.46 0.00 46.97 4.26
1731 2893 1.226945 GTGCGGTTGTTGCAAGCTT 60.227 52.632 0.00 0.00 45.23 3.74
1735 2897 1.308783 TGAGTGTGCGGTTGTTGCAA 61.309 50.000 0.00 0.00 45.23 4.08
1739 2901 0.732571 CAAGTGAGTGTGCGGTTGTT 59.267 50.000 0.00 0.00 0.00 2.83
1740 2902 0.392461 ACAAGTGAGTGTGCGGTTGT 60.392 50.000 0.00 0.00 0.00 3.32
1782 2944 3.147629 CTCGAGATAGTACCCGTGGATT 58.852 50.000 6.58 0.00 0.00 3.01
1875 3037 1.003718 GTTGGAGACGGGGTCAAGG 60.004 63.158 0.00 0.00 34.60 3.61
1878 3041 0.834261 TGATGTTGGAGACGGGGTCA 60.834 55.000 0.00 0.00 34.60 4.02
1921 3084 4.324991 GGAAGGTGGGAACGCGGT 62.325 66.667 12.47 1.91 43.50 5.68
1988 3151 1.804326 CCGTACAAGGAGCGGTTCG 60.804 63.158 0.00 0.00 40.53 3.95
2007 3170 0.326522 TGCATAGGAAGGAGGCCAGA 60.327 55.000 5.01 0.00 0.00 3.86
2022 3185 2.760159 GCCATGGTAACGCGTGCAT 61.760 57.895 14.98 0.00 42.51 3.96
2041 3204 5.413499 GCACACAGCTTGATGGAAATTAAT 58.587 37.500 3.37 0.00 41.15 1.40
2096 3259 0.179034 ATCAAGGAAGGGATCAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
2107 3270 2.242196 GGTGGGAATCAGGATCAAGGAA 59.758 50.000 0.00 0.00 0.00 3.36
2108 3271 1.846439 GGTGGGAATCAGGATCAAGGA 59.154 52.381 0.00 0.00 0.00 3.36
2120 3283 2.136026 GACCATAGGGAAGGTGGGAAT 58.864 52.381 0.00 0.00 38.50 3.01
2122 3285 0.419865 TGACCATAGGGAAGGTGGGA 59.580 55.000 0.00 0.00 38.50 4.37
2131 3354 2.689983 GGCATTGAACTTGACCATAGGG 59.310 50.000 0.00 0.00 41.29 3.53
2132 3355 3.129287 GTGGCATTGAACTTGACCATAGG 59.871 47.826 0.00 0.00 0.00 2.57
2134 3357 3.088532 GGTGGCATTGAACTTGACCATA 58.911 45.455 0.00 0.00 0.00 2.74
2135 3358 1.895131 GGTGGCATTGAACTTGACCAT 59.105 47.619 0.00 0.00 0.00 3.55
2136 3359 1.327303 GGTGGCATTGAACTTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
2138 3361 0.240945 CGGGTGGCATTGAACTTGAC 59.759 55.000 0.00 0.00 0.00 3.18
2144 3367 1.602323 GTGTCCGGGTGGCATTGAA 60.602 57.895 0.00 0.00 34.14 2.69
2254 3477 0.952984 GACAAGGCAGTCTCCAGCAC 60.953 60.000 3.24 0.00 35.65 4.40
2263 3486 1.789078 CGCAGCAAAGACAAGGCAGT 61.789 55.000 0.00 0.00 0.00 4.40
2293 3516 2.827800 TCTTGAGTGGAGAGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
2305 3528 2.855209 AGCTGCTGAACATCTTGAGT 57.145 45.000 0.00 0.00 0.00 3.41
2382 3607 2.059756 AAGATTTGAGGGGGAGTGGA 57.940 50.000 0.00 0.00 0.00 4.02
2424 3649 5.446860 CCCTTGGAGACTACTGTATACAGA 58.553 45.833 34.16 18.77 46.59 3.41
2458 3683 8.747471 TGGCATCTGTTCATATTTATTCAACAA 58.253 29.630 0.00 0.00 0.00 2.83
2508 3733 9.979578 TGAGAAATGTTAGCAATAAACAACAAT 57.020 25.926 0.00 0.00 40.05 2.71
2515 3740 7.415095 CCGTGGATGAGAAATGTTAGCAATAAA 60.415 37.037 0.00 0.00 0.00 1.40
2523 3751 2.639065 GCCCGTGGATGAGAAATGTTA 58.361 47.619 0.00 0.00 0.00 2.41
2531 3759 1.302033 GCATAGGCCCGTGGATGAG 60.302 63.158 0.00 0.00 0.00 2.90
2540 3768 1.035139 CATTTGGTGAGCATAGGCCC 58.965 55.000 0.00 0.00 42.56 5.80
2554 3782 4.330074 GGATCCTGTAAGTCGACACATTTG 59.670 45.833 19.50 6.23 0.00 2.32
2555 3783 4.504858 GGATCCTGTAAGTCGACACATTT 58.495 43.478 19.50 5.64 0.00 2.32
2556 3784 3.118738 GGGATCCTGTAAGTCGACACATT 60.119 47.826 19.50 6.03 0.00 2.71
2557 3785 2.431057 GGGATCCTGTAAGTCGACACAT 59.569 50.000 19.50 6.04 0.00 3.21
2558 3786 1.822990 GGGATCCTGTAAGTCGACACA 59.177 52.381 19.50 13.22 0.00 3.72
2559 3787 1.822990 TGGGATCCTGTAAGTCGACAC 59.177 52.381 19.50 8.78 0.00 3.67
2560 3788 2.100197 CTGGGATCCTGTAAGTCGACA 58.900 52.381 19.50 0.00 0.00 4.35
2561 3789 1.409427 CCTGGGATCCTGTAAGTCGAC 59.591 57.143 12.58 7.70 0.00 4.20
2562 3790 1.006758 ACCTGGGATCCTGTAAGTCGA 59.993 52.381 12.58 0.00 0.00 4.20
2563 3791 1.486211 ACCTGGGATCCTGTAAGTCG 58.514 55.000 12.58 0.00 0.00 4.18
2564 3792 2.361438 CGTACCTGGGATCCTGTAAGTC 59.639 54.545 12.58 0.00 0.00 3.01
2565 3793 2.024655 TCGTACCTGGGATCCTGTAAGT 60.025 50.000 12.58 5.30 0.00 2.24
2566 3794 2.623889 CTCGTACCTGGGATCCTGTAAG 59.376 54.545 12.58 12.63 0.00 2.34
2567 3795 2.662866 CTCGTACCTGGGATCCTGTAA 58.337 52.381 12.58 0.00 0.00 2.41
2568 3796 1.753141 GCTCGTACCTGGGATCCTGTA 60.753 57.143 12.58 8.33 0.00 2.74
2569 3797 1.043673 GCTCGTACCTGGGATCCTGT 61.044 60.000 12.58 9.34 0.00 4.00
2570 3798 0.757188 AGCTCGTACCTGGGATCCTG 60.757 60.000 12.58 5.01 0.00 3.86
2571 3799 0.032017 AAGCTCGTACCTGGGATCCT 60.032 55.000 12.58 0.00 0.00 3.24
2572 3800 0.389757 GAAGCTCGTACCTGGGATCC 59.610 60.000 1.92 1.92 0.00 3.36
2581 3890 4.026804 CCACAAATCGTATGAAGCTCGTAC 60.027 45.833 0.00 0.00 35.94 3.67
2620 3929 2.046023 CATTGAGCAGGACCGCCA 60.046 61.111 4.93 1.48 36.29 5.69
2661 3976 0.468226 AGCCAGGAAGTTGACGTGAA 59.532 50.000 0.00 0.00 0.00 3.18
2840 4526 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
2841 4527 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2842 4528 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2843 4529 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2844 4530 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2845 4531 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2846 4532 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2893 4579 9.952188 CAAGGTATGTCTATATACATCCGTATG 57.048 37.037 7.00 7.45 40.52 2.39
2894 4580 9.132923 CCAAGGTATGTCTATATACATCCGTAT 57.867 37.037 7.00 0.00 40.52 3.06
2895 4581 8.330993 TCCAAGGTATGTCTATATACATCCGTA 58.669 37.037 7.00 0.00 40.52 4.02
2896 4582 7.179966 TCCAAGGTATGTCTATATACATCCGT 58.820 38.462 7.00 5.18 40.52 4.69
2897 4583 7.339721 ACTCCAAGGTATGTCTATATACATCCG 59.660 40.741 7.00 0.94 40.52 4.18
2898 4584 8.470805 CACTCCAAGGTATGTCTATATACATCC 58.529 40.741 7.00 8.61 40.52 3.51
2899 4585 9.026121 ACACTCCAAGGTATGTCTATATACATC 57.974 37.037 7.00 1.06 40.52 3.06
2900 4586 8.958060 ACACTCCAAGGTATGTCTATATACAT 57.042 34.615 8.61 8.61 42.62 2.29
2901 4587 9.516546 CTACACTCCAAGGTATGTCTATATACA 57.483 37.037 0.00 0.00 35.67 2.29
2902 4588 9.736414 TCTACACTCCAAGGTATGTCTATATAC 57.264 37.037 2.12 0.00 33.71 1.47
2904 4590 9.830186 AATCTACACTCCAAGGTATGTCTATAT 57.170 33.333 2.12 0.00 0.00 0.86
2905 4591 9.298250 GAATCTACACTCCAAGGTATGTCTATA 57.702 37.037 2.12 0.00 0.00 1.31
2906 4592 7.785028 TGAATCTACACTCCAAGGTATGTCTAT 59.215 37.037 2.12 0.00 0.00 1.98
2907 4593 7.068348 GTGAATCTACACTCCAAGGTATGTCTA 59.932 40.741 0.00 0.00 37.73 2.59
2908 4594 5.958380 TGAATCTACACTCCAAGGTATGTCT 59.042 40.000 2.12 0.00 0.00 3.41
2909 4595 6.043411 GTGAATCTACACTCCAAGGTATGTC 58.957 44.000 0.00 0.00 37.73 3.06
2910 4596 5.721960 AGTGAATCTACACTCCAAGGTATGT 59.278 40.000 0.00 4.04 46.36 2.29
2911 4597 6.227298 AGTGAATCTACACTCCAAGGTATG 57.773 41.667 0.00 0.00 46.36 2.39
2922 4608 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
2923 4609 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
2924 4610 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2925 4611 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2926 4612 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2927 4613 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2928 4614 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2929 4615 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2930 4616 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
2931 4617 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
2932 4618 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
2933 4619 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
2934 4620 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
2935 4621 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
2936 4622 7.796054 ACTATGGACTACATACAGAGCAAAAT 58.204 34.615 0.00 0.00 41.03 1.82
2937 4623 7.182817 ACTATGGACTACATACAGAGCAAAA 57.817 36.000 0.00 0.00 41.03 2.44
2938 4624 6.791867 ACTATGGACTACATACAGAGCAAA 57.208 37.500 0.00 0.00 41.03 3.68
2939 4625 7.287810 TCTACTATGGACTACATACAGAGCAA 58.712 38.462 0.00 0.00 41.03 3.91
2940 4626 6.838382 TCTACTATGGACTACATACAGAGCA 58.162 40.000 0.00 0.00 41.03 4.26
2941 4627 7.747155 TTCTACTATGGACTACATACAGAGC 57.253 40.000 0.00 0.00 41.03 4.09
2942 4628 9.733556 AGATTCTACTATGGACTACATACAGAG 57.266 37.037 0.00 0.00 41.03 3.35
2943 4629 9.727859 GAGATTCTACTATGGACTACATACAGA 57.272 37.037 0.00 0.00 41.03 3.41
2944 4630 9.733556 AGAGATTCTACTATGGACTACATACAG 57.266 37.037 0.00 0.00 41.03 2.74
2971 4657 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2972 4658 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2973 4659 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2974 4660 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2975 4661 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2976 4662 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2977 4663 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2978 4664 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2979 4665 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2980 4666 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2981 4667 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2982 4668 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2983 4669 3.959449 GACTACTCCCTCCGTTCCTAAAT 59.041 47.826 0.00 0.00 0.00 1.40
2984 4670 3.245371 TGACTACTCCCTCCGTTCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
2985 4671 2.309755 TGACTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
2986 4672 1.918262 TGACTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
2987 4673 0.702902 TGACTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
2988 4674 1.104630 CTGACTACTCCCTCCGTTCC 58.895 60.000 0.00 0.00 0.00 3.62
2989 4675 1.836802 ACTGACTACTCCCTCCGTTC 58.163 55.000 0.00 0.00 0.00 3.95
2990 4676 3.666345 ATACTGACTACTCCCTCCGTT 57.334 47.619 0.00 0.00 0.00 4.44
2991 4677 4.997545 ATATACTGACTACTCCCTCCGT 57.002 45.455 0.00 0.00 0.00 4.69
2992 4678 6.448006 CAAAATATACTGACTACTCCCTCCG 58.552 44.000 0.00 0.00 0.00 4.63
2993 4679 6.042208 AGCAAAATATACTGACTACTCCCTCC 59.958 42.308 0.00 0.00 0.00 4.30
2994 4680 6.926272 CAGCAAAATATACTGACTACTCCCTC 59.074 42.308 0.00 0.00 33.10 4.30
2995 4681 6.384305 ACAGCAAAATATACTGACTACTCCCT 59.616 38.462 0.00 0.00 35.38 4.20
2996 4682 6.583562 ACAGCAAAATATACTGACTACTCCC 58.416 40.000 0.00 0.00 35.38 4.30
3066 5008 8.521170 TCAGACCCTGTATATAGCATATACAC 57.479 38.462 17.66 11.83 36.00 2.90
3120 5627 7.658575 GGAGTAACAAAACACAATCTAGTGGTA 59.341 37.037 0.00 0.00 38.80 3.25
3396 5966 8.693120 TGTGTAATGTGTAAATAAAGGGTGAA 57.307 30.769 0.00 0.00 0.00 3.18
3454 6024 3.997021 CCTGCGGCTTATAAGTTCCATAG 59.003 47.826 13.91 8.02 0.00 2.23
3465 6035 2.418368 TGAAATGTCCTGCGGCTTAT 57.582 45.000 0.00 0.00 0.00 1.73
3617 6187 1.022451 GGCCACGGAAGTTTATCGCA 61.022 55.000 0.00 0.00 46.40 5.10
3624 6194 0.953960 GAATCACGGCCACGGAAGTT 60.954 55.000 2.24 0.00 46.40 2.66
3646 6216 2.753966 CGGGCCAGCATCTCAAACG 61.754 63.158 4.39 0.00 0.00 3.60
3790 6360 9.178758 AGGAACTCACATTATCAAACTTATTCC 57.821 33.333 0.00 0.00 0.00 3.01
3816 6386 4.640771 ACATAGCTTCTTCCACCTTCAA 57.359 40.909 0.00 0.00 0.00 2.69
3820 6390 5.440610 CCAATAACATAGCTTCTTCCACCT 58.559 41.667 0.00 0.00 0.00 4.00
3821 6391 4.036852 GCCAATAACATAGCTTCTTCCACC 59.963 45.833 0.00 0.00 0.00 4.61
3918 6488 1.975680 TCCCAACTCCTAGGACAACAC 59.024 52.381 7.62 0.00 0.00 3.32
4004 6581 2.258755 GCACATTCAAATGCCGTTACC 58.741 47.619 2.66 0.00 40.04 2.85
4091 6672 5.426504 ACCAAATTTGACAACAAAGATGCA 58.573 33.333 19.86 0.00 46.84 3.96
4144 6726 0.319469 CGGCCGCAAACCAATTTTCT 60.319 50.000 14.67 0.00 0.00 2.52
4240 6822 5.045578 TCCTTTCACCCAGGAAGAAGAATAG 60.046 44.000 0.00 0.00 37.51 1.73
4249 6831 6.212589 GGAATAAAAATCCTTTCACCCAGGAA 59.787 38.462 0.00 0.00 43.93 3.36
4283 7847 2.574018 CGCATCGGCTGGAGGGATA 61.574 63.158 0.00 0.00 38.10 2.59
4319 7883 3.621715 CCTTAATGGTAGACTTCGTTGGC 59.378 47.826 0.00 0.00 0.00 4.52
4387 7951 2.280797 GCCTTGCAGTCGTCACCA 60.281 61.111 0.00 0.00 0.00 4.17
4389 7953 0.235926 GAAAGCCTTGCAGTCGTCAC 59.764 55.000 0.00 0.00 0.00 3.67
4390 7954 1.221466 CGAAAGCCTTGCAGTCGTCA 61.221 55.000 0.00 0.00 34.20 4.35
4393 7957 0.110644 GAACGAAAGCCTTGCAGTCG 60.111 55.000 9.07 9.07 40.89 4.18
4394 7958 0.944386 TGAACGAAAGCCTTGCAGTC 59.056 50.000 0.00 0.00 0.00 3.51
4395 7959 0.947244 CTGAACGAAAGCCTTGCAGT 59.053 50.000 0.00 0.00 0.00 4.40
4396 7960 0.947244 ACTGAACGAAAGCCTTGCAG 59.053 50.000 0.00 0.00 0.00 4.41
4397 7961 0.662619 CACTGAACGAAAGCCTTGCA 59.337 50.000 0.00 0.00 0.00 4.08
4398 7962 0.661483 GCACTGAACGAAAGCCTTGC 60.661 55.000 0.00 0.00 0.00 4.01
4399 7963 0.947244 AGCACTGAACGAAAGCCTTG 59.053 50.000 0.00 0.00 0.00 3.61
4400 7964 1.230324 GAGCACTGAACGAAAGCCTT 58.770 50.000 0.00 0.00 0.00 4.35
4401 7965 0.946221 CGAGCACTGAACGAAAGCCT 60.946 55.000 0.00 0.00 0.00 4.58
4402 7966 0.944311 TCGAGCACTGAACGAAAGCC 60.944 55.000 0.00 0.00 33.20 4.35
4403 7967 0.161870 GTCGAGCACTGAACGAAAGC 59.838 55.000 0.00 0.00 37.77 3.51
4404 7968 1.772182 AGTCGAGCACTGAACGAAAG 58.228 50.000 0.00 0.00 37.77 2.62
4405 7969 3.959478 AGTCGAGCACTGAACGAAA 57.041 47.368 0.00 0.00 37.77 3.46
4413 7977 2.358003 GCCTTGCAGTCGAGCACT 60.358 61.111 0.00 0.00 45.61 4.40
4414 7978 1.510480 AAAGCCTTGCAGTCGAGCAC 61.510 55.000 0.00 0.00 45.61 4.40
4415 7979 1.227943 AAAGCCTTGCAGTCGAGCA 60.228 52.632 0.00 0.00 43.99 4.26
4416 7980 1.499502 GAAAGCCTTGCAGTCGAGC 59.500 57.895 0.00 0.00 0.00 5.03
4417 7981 0.946221 ACGAAAGCCTTGCAGTCGAG 60.946 55.000 15.29 0.00 38.66 4.04
4418 7982 0.531974 AACGAAAGCCTTGCAGTCGA 60.532 50.000 15.29 0.00 38.66 4.20
4429 7993 0.514691 CCAGAGCACTGAACGAAAGC 59.485 55.000 13.19 0.00 46.03 3.51
4438 8002 1.988956 AGAGGAGGCCAGAGCACTG 60.989 63.158 5.01 3.89 42.56 3.66
4441 8005 1.986757 GACAGAGGAGGCCAGAGCA 60.987 63.158 5.01 0.00 42.56 4.26
4448 8012 1.668101 AATCGACGGACAGAGGAGGC 61.668 60.000 0.00 0.00 0.00 4.70
4511 8075 2.727392 CCTGGTCCCATCGCCGTAA 61.727 63.158 0.00 0.00 0.00 3.18
4554 8121 0.254178 GAATCTTGGAGGCAGAGGCA 59.746 55.000 0.00 0.00 43.71 4.75
4560 8127 3.387962 AGGTATGAGAATCTTGGAGGCA 58.612 45.455 0.00 0.00 34.92 4.75
4623 8190 3.598019 TCATGGAGAAGCAAAAATGGC 57.402 42.857 0.00 0.00 0.00 4.40
4660 8231 1.831389 ATGCGTTCGTCAGTGTGTGC 61.831 55.000 0.00 0.00 0.00 4.57
4679 8250 8.946085 GGTGTGAATTATTCTTGAATCTGTACA 58.054 33.333 6.50 0.00 0.00 2.90
4680 8251 9.167311 AGGTGTGAATTATTCTTGAATCTGTAC 57.833 33.333 6.50 0.00 0.00 2.90
4681 8252 9.166173 CAGGTGTGAATTATTCTTGAATCTGTA 57.834 33.333 6.50 0.00 0.00 2.74
4682 8253 7.121759 CCAGGTGTGAATTATTCTTGAATCTGT 59.878 37.037 6.50 0.00 0.00 3.41
4683 8254 7.337689 TCCAGGTGTGAATTATTCTTGAATCTG 59.662 37.037 6.50 5.18 0.00 2.90
4685 8256 7.630242 TCCAGGTGTGAATTATTCTTGAATC 57.370 36.000 6.50 0.00 0.00 2.52
4688 8259 5.887598 CCATCCAGGTGTGAATTATTCTTGA 59.112 40.000 6.50 0.00 0.00 3.02
4689 8260 5.450965 GCCATCCAGGTGTGAATTATTCTTG 60.451 44.000 6.50 0.00 40.61 3.02
4690 8261 4.646492 GCCATCCAGGTGTGAATTATTCTT 59.354 41.667 6.50 0.00 40.61 2.52
4691 8262 4.210331 GCCATCCAGGTGTGAATTATTCT 58.790 43.478 6.50 0.00 40.61 2.40
4692 8263 3.953612 TGCCATCCAGGTGTGAATTATTC 59.046 43.478 0.00 0.00 40.61 1.75
4693 8264 3.979911 TGCCATCCAGGTGTGAATTATT 58.020 40.909 0.00 0.00 40.61 1.40
4695 8266 3.289836 CATGCCATCCAGGTGTGAATTA 58.710 45.455 0.00 0.00 40.61 1.40
4696 8267 2.104967 CATGCCATCCAGGTGTGAATT 58.895 47.619 0.00 0.00 40.61 2.17
4698 8269 0.405198 ACATGCCATCCAGGTGTGAA 59.595 50.000 0.00 0.00 37.03 3.18
4699 8270 0.405198 AACATGCCATCCAGGTGTGA 59.595 50.000 0.00 0.00 38.67 3.58
4700 8271 1.203052 GAAACATGCCATCCAGGTGTG 59.797 52.381 0.00 0.00 38.67 3.82
4702 8273 1.475280 CAGAAACATGCCATCCAGGTG 59.525 52.381 0.00 0.00 38.67 4.00
4703 8274 1.076024 ACAGAAACATGCCATCCAGGT 59.924 47.619 0.00 0.00 40.78 4.00
4705 8276 4.735578 GCAATACAGAAACATGCCATCCAG 60.736 45.833 0.00 0.00 0.00 3.86
4706 8277 3.130869 GCAATACAGAAACATGCCATCCA 59.869 43.478 0.00 0.00 0.00 3.41
4707 8278 3.130869 TGCAATACAGAAACATGCCATCC 59.869 43.478 0.00 0.00 36.20 3.51
4708 8279 4.374843 TGCAATACAGAAACATGCCATC 57.625 40.909 0.00 0.00 36.20 3.51
4709 8280 4.403113 TCATGCAATACAGAAACATGCCAT 59.597 37.500 0.00 0.00 38.36 4.40
4711 8282 4.374843 TCATGCAATACAGAAACATGCC 57.625 40.909 0.00 0.00 38.36 4.40
4713 8284 8.697846 AAAGAATCATGCAATACAGAAACATG 57.302 30.769 0.00 0.00 39.53 3.21
4768 9667 7.706179 CCCGCAGTGAAATGAATTTAACATAAT 59.294 33.333 6.13 0.00 34.25 1.28
4770 9669 6.375736 TCCCGCAGTGAAATGAATTTAACATA 59.624 34.615 6.13 0.00 34.25 2.29
4771 9670 5.184864 TCCCGCAGTGAAATGAATTTAACAT 59.815 36.000 6.13 0.00 34.25 2.71
4774 9673 5.713792 TTCCCGCAGTGAAATGAATTTAA 57.286 34.783 0.00 0.00 0.00 1.52
4775 9674 5.913137 ATTCCCGCAGTGAAATGAATTTA 57.087 34.783 0.00 0.00 0.00 1.40
4778 9677 4.269183 TGTATTCCCGCAGTGAAATGAAT 58.731 39.130 0.00 0.00 0.00 2.57
4779 9678 3.680490 TGTATTCCCGCAGTGAAATGAA 58.320 40.909 0.00 0.00 0.00 2.57
4780 9679 3.342377 TGTATTCCCGCAGTGAAATGA 57.658 42.857 0.00 0.00 0.00 2.57
4781 9680 3.378112 ACATGTATTCCCGCAGTGAAATG 59.622 43.478 0.00 0.00 0.00 2.32
4783 9682 3.066291 ACATGTATTCCCGCAGTGAAA 57.934 42.857 0.00 0.00 0.00 2.69
4787 9686 3.066291 TGAAACATGTATTCCCGCAGT 57.934 42.857 0.00 0.00 0.00 4.40
4788 9687 4.637483 ATTGAAACATGTATTCCCGCAG 57.363 40.909 0.00 0.00 0.00 5.18
4791 9690 9.748708 ATGAATTAATTGAAACATGTATTCCCG 57.251 29.630 5.17 0.00 0.00 5.14
4836 9735 9.866655 ATTGGTGGATTATTAATCTGTACATGT 57.133 29.630 14.46 2.69 38.01 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.