Multiple sequence alignment - TraesCS6B01G112800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G112800 chr6B 100.000 4054 0 0 1 4054 95331772 95327719 0.000000e+00 7487.0
1 TraesCS6B01G112800 chr6D 89.157 2490 152 51 702 3170 41925293 41927685 0.000000e+00 2994.0
2 TraesCS6B01G112800 chr6D 87.255 510 54 7 3545 4051 41927739 41928240 4.550000e-159 571.0
3 TraesCS6B01G112800 chr6D 87.097 341 41 3 344 683 41924611 41924949 2.290000e-102 383.0
4 TraesCS6B01G112800 chr6D 87.423 326 39 2 15 339 41907177 41907501 1.380000e-99 374.0
5 TraesCS6B01G112800 chr6D 90.155 193 10 4 3159 3351 218407191 218407374 4.050000e-60 243.0
6 TraesCS6B01G112800 chr6D 90.426 188 11 2 3180 3367 324602572 324602392 1.460000e-59 241.0
7 TraesCS6B01G112800 chr6A 85.292 1659 173 33 1 1631 52394525 52396140 0.000000e+00 1646.0
8 TraesCS6B01G112800 chr6A 94.512 911 47 3 2256 3166 52396665 52397572 0.000000e+00 1402.0
9 TraesCS6B01G112800 chr6A 83.400 500 50 11 3554 4051 52398029 52398497 2.240000e-117 433.0
10 TraesCS6B01G112800 chr6A 91.209 182 10 1 3173 3354 458217702 458217877 4.050000e-60 243.0
11 TraesCS6B01G112800 chr7D 93.750 176 7 2 3176 3351 510887213 510887384 1.120000e-65 261.0
12 TraesCS6B01G112800 chr7D 93.064 173 6 1 3180 3352 312574293 312574127 8.700000e-62 248.0
13 TraesCS6B01G112800 chr4D 92.350 183 9 4 3170 3351 227873780 227873958 5.200000e-64 255.0
14 TraesCS6B01G112800 chr4D 91.257 183 11 4 3170 3351 170348516 170348694 1.130000e-60 244.0
15 TraesCS6B01G112800 chr2D 91.713 181 10 3 3170 3349 333032264 333032440 3.130000e-61 246.0
16 TraesCS6B01G112800 chr2B 92.045 176 13 1 3178 3353 670841012 670841186 3.130000e-61 246.0
17 TraesCS6B01G112800 chr1A 76.094 297 63 7 1 293 137207217 137207509 9.080000e-32 148.0
18 TraesCS6B01G112800 chr4A 75.238 210 44 5 74 275 631911052 631910843 4.310000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G112800 chr6B 95327719 95331772 4053 True 7487.000000 7487 100.000000 1 4054 1 chr6B.!!$R1 4053
1 TraesCS6B01G112800 chr6D 41924611 41928240 3629 False 1316.000000 2994 87.836333 344 4051 3 chr6D.!!$F3 3707
2 TraesCS6B01G112800 chr6A 52394525 52398497 3972 False 1160.333333 1646 87.734667 1 4051 3 chr6A.!!$F2 4050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 1198 0.107703 CCACCATGAGGCACACGTAT 60.108 55.0 0.00 0.0 39.06 3.06 F
1993 2396 0.035152 TGCATGGTTTCGATGCCTCT 60.035 50.0 12.53 0.0 44.76 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 3004 0.106719 CTTCCCAATGCCATACCGGT 60.107 55.0 13.98 13.98 36.97 5.28 R
3175 3599 0.175989 GGAACGGAGGGAGTAGCAAG 59.824 60.0 0.00 0.00 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.006102 CCACCGACGTCTCTTGCTT 60.006 57.895 14.70 0.00 0.00 3.91
69 70 2.740055 CTTGCTTCGACTGCGGCT 60.740 61.111 0.00 0.00 38.28 5.52
98 99 3.181465 GGTCCTCAACTTGTCTGTCTTCA 60.181 47.826 0.00 0.00 0.00 3.02
102 103 3.141398 TCAACTTGTCTGTCTTCATGGC 58.859 45.455 0.00 0.00 0.00 4.40
107 108 2.270205 CTGTCTTCATGGCCGCCT 59.730 61.111 11.61 0.00 0.00 5.52
108 109 1.817099 CTGTCTTCATGGCCGCCTC 60.817 63.158 11.61 0.00 0.00 4.70
110 111 4.161295 TCTTCATGGCCGCCTCCG 62.161 66.667 11.61 0.00 0.00 4.63
113 114 4.776322 TCATGGCCGCCTCCGTTG 62.776 66.667 11.61 1.15 0.00 4.10
136 137 2.740981 GGATCATGTTCATCATCGCCTC 59.259 50.000 6.14 0.00 34.09 4.70
137 138 2.985957 TCATGTTCATCATCGCCTCA 57.014 45.000 0.00 0.00 34.09 3.86
140 141 2.985957 TGTTCATCATCGCCTCATCA 57.014 45.000 0.00 0.00 0.00 3.07
142 143 3.812262 TGTTCATCATCGCCTCATCAAT 58.188 40.909 0.00 0.00 0.00 2.57
143 144 3.562557 TGTTCATCATCGCCTCATCAATG 59.437 43.478 0.00 0.00 0.00 2.82
144 145 2.774687 TCATCATCGCCTCATCAATGG 58.225 47.619 0.00 0.00 0.00 3.16
145 146 1.810755 CATCATCGCCTCATCAATGGG 59.189 52.381 0.00 0.00 0.00 4.00
146 147 0.535780 TCATCGCCTCATCAATGGGC 60.536 55.000 10.66 10.66 39.33 5.36
149 150 3.425422 GCCTCATCAATGGGCGTC 58.575 61.111 6.70 0.00 35.49 5.19
150 151 2.537560 GCCTCATCAATGGGCGTCG 61.538 63.158 6.70 0.00 35.49 5.12
151 152 1.153369 CCTCATCAATGGGCGTCGT 60.153 57.895 0.00 0.00 0.00 4.34
152 153 1.154205 CCTCATCAATGGGCGTCGTC 61.154 60.000 0.00 0.00 0.00 4.20
153 154 1.482621 CTCATCAATGGGCGTCGTCG 61.483 60.000 0.00 0.00 40.37 5.12
154 155 1.518352 CATCAATGGGCGTCGTCGA 60.518 57.895 6.17 0.00 39.71 4.20
155 156 1.226974 ATCAATGGGCGTCGTCGAG 60.227 57.895 6.17 0.00 39.71 4.04
156 157 3.554692 CAATGGGCGTCGTCGAGC 61.555 66.667 6.17 1.45 39.71 5.03
159 160 1.940883 AATGGGCGTCGTCGAGCTTA 61.941 55.000 6.17 6.37 39.71 3.09
167 168 1.227002 CGTCGAGCTTAGGGAAGGC 60.227 63.158 0.00 0.00 32.84 4.35
170 171 0.753262 TCGAGCTTAGGGAAGGCATC 59.247 55.000 0.00 0.00 32.84 3.91
183 185 0.620556 AGGCATCCCGTGAAAGTGAT 59.379 50.000 0.00 0.00 35.76 3.06
184 186 1.017387 GGCATCCCGTGAAAGTGATC 58.983 55.000 0.00 0.00 0.00 2.92
185 187 0.652592 GCATCCCGTGAAAGTGATCG 59.347 55.000 0.00 0.00 0.00 3.69
190 192 1.225475 CGTGAAAGTGATCGCGCAC 60.225 57.895 8.75 4.73 44.98 5.34
197 199 4.067913 TGATCGCGCACTGCCAGA 62.068 61.111 8.75 0.00 42.08 3.86
220 222 1.749258 GGCTCCATGGACGGAAACC 60.749 63.158 11.44 1.92 33.65 3.27
226 228 1.004200 ATGGACGGAAACCACGACC 60.004 57.895 0.00 0.00 44.35 4.79
235 237 1.407656 AAACCACGACCAGAGGAGCA 61.408 55.000 0.00 0.00 34.46 4.26
238 240 0.460987 CCACGACCAGAGGAGCATTC 60.461 60.000 0.00 0.00 31.73 2.67
239 241 0.247460 CACGACCAGAGGAGCATTCA 59.753 55.000 0.00 0.00 0.00 2.57
241 243 0.247460 CGACCAGAGGAGCATTCACA 59.753 55.000 0.00 0.00 0.00 3.58
248 250 0.687354 AGGAGCATTCACAACTCGGT 59.313 50.000 0.00 0.00 0.00 4.69
261 263 3.131577 ACAACTCGGTGAACAAGTAGTCA 59.868 43.478 0.00 0.00 0.00 3.41
265 267 3.064207 TCGGTGAACAAGTAGTCATTGC 58.936 45.455 0.00 0.00 0.00 3.56
272 274 3.931578 ACAAGTAGTCATTGCTGAGGTC 58.068 45.455 0.00 0.00 30.18 3.85
283 285 0.530744 GCTGAGGTCGATGGTGTACA 59.469 55.000 0.00 0.00 0.00 2.90
284 286 1.067142 GCTGAGGTCGATGGTGTACAA 60.067 52.381 0.00 0.00 0.00 2.41
285 287 2.607187 CTGAGGTCGATGGTGTACAAC 58.393 52.381 3.20 3.20 0.00 3.32
288 290 2.075761 GTCGATGGTGTACAACGGC 58.924 57.895 6.39 4.32 44.40 5.68
293 295 1.543065 ATGGTGTACAACGGCGGGTA 61.543 55.000 13.24 10.84 0.00 3.69
322 324 1.497722 GAGTTGAAGAAAGCGGCGG 59.502 57.895 9.78 0.00 0.00 6.13
332 334 2.725203 AAAGCGGCGGAGTGCTACAA 62.725 55.000 9.78 0.00 45.43 2.41
353 355 1.438651 GATTGTTGCGTGTCAGGCTA 58.561 50.000 17.72 8.24 0.00 3.93
370 372 2.073816 GCTAACTGTATTGCACGGTGT 58.926 47.619 10.24 0.00 46.47 4.16
395 397 6.791887 GTAGTAGTACGATGCCATGTACTA 57.208 41.667 16.42 16.42 46.97 1.82
408 410 1.306739 GTACTAGGTGGGCCAGGGT 60.307 63.158 6.40 6.15 37.19 4.34
409 411 1.002533 TACTAGGTGGGCCAGGGTC 59.997 63.158 6.40 0.00 37.19 4.46
480 482 3.134879 CCGTCCTAAGCGGCCATA 58.865 61.111 2.24 0.00 42.82 2.74
484 486 1.271379 CGTCCTAAGCGGCCATATGTA 59.729 52.381 2.24 0.00 0.00 2.29
485 487 2.288579 CGTCCTAAGCGGCCATATGTAA 60.289 50.000 2.24 0.00 0.00 2.41
515 517 1.816863 GCCCTCTCCTTCACGTGTCA 61.817 60.000 16.51 2.58 0.00 3.58
525 527 3.303329 CCTTCACGTGTCATTCTTGTGTG 60.303 47.826 16.51 0.00 32.55 3.82
526 528 1.597195 TCACGTGTCATTCTTGTGTGC 59.403 47.619 16.51 0.00 32.55 4.57
554 557 3.255642 ACGCTATTGCATTGTTGGAGTTT 59.744 39.130 0.00 0.00 39.64 2.66
577 581 0.596577 CAGTCCGACGAGACCTCAAA 59.403 55.000 11.34 0.00 37.49 2.69
578 582 1.202582 CAGTCCGACGAGACCTCAAAT 59.797 52.381 11.34 0.00 37.49 2.32
579 583 1.473278 AGTCCGACGAGACCTCAAATC 59.527 52.381 11.34 0.00 37.49 2.17
580 584 1.473278 GTCCGACGAGACCTCAAATCT 59.527 52.381 0.00 0.00 0.00 2.40
581 585 2.094649 GTCCGACGAGACCTCAAATCTT 60.095 50.000 0.00 0.00 0.00 2.40
582 586 2.094700 TCCGACGAGACCTCAAATCTTG 60.095 50.000 0.00 0.00 34.23 3.02
583 587 2.352814 CCGACGAGACCTCAAATCTTGT 60.353 50.000 0.00 0.00 42.46 3.16
584 588 2.663602 CGACGAGACCTCAAATCTTGTG 59.336 50.000 0.00 0.00 40.31 3.33
585 589 3.611766 CGACGAGACCTCAAATCTTGTGA 60.612 47.826 0.00 0.00 40.31 3.58
586 590 3.654414 ACGAGACCTCAAATCTTGTGAC 58.346 45.455 0.00 0.00 39.03 3.67
612 616 2.256306 GGGATTGAGAGAGGAGGGATC 58.744 57.143 0.00 0.00 0.00 3.36
623 627 1.281867 AGGAGGGATCGTGAAATTGCA 59.718 47.619 0.00 0.00 0.00 4.08
640 644 2.100631 CACGGACATCGGCTTGGTC 61.101 63.158 0.00 0.00 44.45 4.02
703 1032 5.453762 CGTATAAACTCCCCCGATTTAGGTT 60.454 44.000 0.00 0.00 0.00 3.50
765 1094 1.226773 GGTGATACCGTTCGGTCCG 60.227 63.158 20.17 4.39 39.52 4.79
772 1101 3.776656 CGTTCGGTCCGGACATTC 58.223 61.111 34.40 17.34 34.65 2.67
777 1106 2.047655 GGTCCGGACATTCGCACA 60.048 61.111 34.40 0.00 0.00 4.57
794 1123 0.753479 ACATGTTTTGGTGACCCGCA 60.753 50.000 0.00 0.00 0.00 5.69
814 1143 1.276140 TTGGGGATGTCCTAACCCGG 61.276 60.000 0.00 0.00 46.38 5.73
853 1185 2.518112 TGTTGTGTGCGCCACCAT 60.518 55.556 21.23 0.00 43.85 3.55
866 1198 0.107703 CCACCATGAGGCACACGTAT 60.108 55.000 0.00 0.00 39.06 3.06
889 1221 4.796495 GGCCCCATCCACACCGTC 62.796 72.222 0.00 0.00 0.00 4.79
890 1222 4.796495 GCCCCATCCACACCGTCC 62.796 72.222 0.00 0.00 0.00 4.79
891 1223 3.326578 CCCCATCCACACCGTCCA 61.327 66.667 0.00 0.00 0.00 4.02
892 1224 2.046314 CCCATCCACACCGTCCAC 60.046 66.667 0.00 0.00 0.00 4.02
893 1225 2.747022 CCATCCACACCGTCCACA 59.253 61.111 0.00 0.00 0.00 4.17
894 1226 1.072332 CCATCCACACCGTCCACAA 59.928 57.895 0.00 0.00 0.00 3.33
895 1227 0.536233 CCATCCACACCGTCCACAAA 60.536 55.000 0.00 0.00 0.00 2.83
896 1228 0.874390 CATCCACACCGTCCACAAAG 59.126 55.000 0.00 0.00 0.00 2.77
897 1229 0.250727 ATCCACACCGTCCACAAAGG 60.251 55.000 0.00 0.00 39.47 3.11
898 1230 2.551912 CCACACCGTCCACAAAGGC 61.552 63.158 0.00 0.00 37.29 4.35
899 1231 1.821759 CACACCGTCCACAAAGGCA 60.822 57.895 0.00 0.00 37.29 4.75
900 1232 1.150536 ACACCGTCCACAAAGGCAT 59.849 52.632 0.00 0.00 37.29 4.40
907 1239 0.888736 TCCACAAAGGCATCCACGTG 60.889 55.000 9.08 9.08 37.29 4.49
977 1309 1.553690 GCTGTGTCCAAGCCCCTCTA 61.554 60.000 0.00 0.00 0.00 2.43
983 1315 1.967779 GTCCAAGCCCCTCTATCTCTC 59.032 57.143 0.00 0.00 0.00 3.20
984 1316 1.862911 TCCAAGCCCCTCTATCTCTCT 59.137 52.381 0.00 0.00 0.00 3.10
985 1317 1.969923 CCAAGCCCCTCTATCTCTCTG 59.030 57.143 0.00 0.00 0.00 3.35
1441 1776 0.611062 TCGACTGGGACTCCGTCATT 60.611 55.000 0.00 0.00 36.83 2.57
1471 1806 3.468326 GATTGCCGCTCTCCCCCTC 62.468 68.421 0.00 0.00 0.00 4.30
1478 1813 4.179599 CTCTCCCCCTCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
1504 1839 1.135944 GGTTTCACGCTTCTGCTAAGC 60.136 52.381 12.65 12.65 39.77 3.09
1531 1899 3.482156 AGACAGTAGGCCAAGCATATG 57.518 47.619 5.01 0.00 0.00 1.78
1549 1917 6.206243 AGCATATGACAGCATTTTATCTGGAC 59.794 38.462 6.97 0.00 35.94 4.02
1551 1919 3.270027 TGACAGCATTTTATCTGGACCG 58.730 45.455 0.00 0.00 34.76 4.79
1553 1921 2.238646 ACAGCATTTTATCTGGACCGGA 59.761 45.455 9.46 5.21 34.76 5.14
1554 1922 3.117888 ACAGCATTTTATCTGGACCGGAT 60.118 43.478 19.81 19.81 34.76 4.18
1566 1937 1.423921 GGACCGGATGGGGAATTACAT 59.576 52.381 9.46 0.00 41.60 2.29
1575 1946 3.335748 TGGGGAATTACATGGGATAGCT 58.664 45.455 0.00 0.00 0.00 3.32
1608 1980 6.867662 ATAGAGTAAGTGCATACATTTGCC 57.132 37.500 0.00 0.00 42.06 4.52
1618 1990 3.633525 GCATACATTTGCCTGAGGATTCA 59.366 43.478 0.65 0.00 36.60 2.57
1651 2023 1.065401 ACAATATGTTGCCGGCGATTG 59.935 47.619 21.90 23.53 38.96 2.67
1652 2024 1.065401 CAATATGTTGCCGGCGATTGT 59.935 47.619 21.90 11.46 0.00 2.71
1653 2025 0.662619 ATATGTTGCCGGCGATTGTG 59.337 50.000 21.90 0.00 0.00 3.33
1656 2028 3.053291 TTGCCGGCGATTGTGTCC 61.053 61.111 23.90 0.00 0.00 4.02
1659 2031 2.332654 GCCGGCGATTGTGTCCTTT 61.333 57.895 12.58 0.00 0.00 3.11
1661 2033 1.501741 CGGCGATTGTGTCCTTTGG 59.498 57.895 0.00 0.00 0.00 3.28
1662 2034 0.953471 CGGCGATTGTGTCCTTTGGA 60.953 55.000 0.00 0.00 0.00 3.53
1670 2042 2.943653 GTCCTTTGGACGTTGCCG 59.056 61.111 0.67 0.00 43.14 5.69
1671 2043 1.595929 GTCCTTTGGACGTTGCCGA 60.596 57.895 0.67 0.00 43.14 5.54
1672 2044 1.146485 TCCTTTGGACGTTGCCGAA 59.854 52.632 0.00 0.00 37.88 4.30
1675 2047 1.000717 CCTTTGGACGTTGCCGAAATT 60.001 47.619 0.00 0.00 37.88 1.82
1689 2061 2.338228 CCGAAATTGAAATCGCGTGTTG 59.662 45.455 5.77 0.00 37.73 3.33
1714 2103 1.725164 CTTAGCTTTCGTCGGGTTCAC 59.275 52.381 0.00 0.00 0.00 3.18
1724 2113 1.207329 GTCGGGTTCACTTGCTAGGAT 59.793 52.381 0.00 0.00 0.00 3.24
1742 2131 5.471556 AGGATCAGTGCTTGATGAGATAG 57.528 43.478 8.69 0.00 46.51 2.08
1764 2160 2.698274 TGCTCAGGATAATACAAGCCGA 59.302 45.455 0.00 0.00 0.00 5.54
1765 2161 3.133901 TGCTCAGGATAATACAAGCCGAA 59.866 43.478 0.00 0.00 0.00 4.30
1766 2162 3.743396 GCTCAGGATAATACAAGCCGAAG 59.257 47.826 0.00 0.00 0.00 3.79
1767 2163 3.728845 TCAGGATAATACAAGCCGAAGC 58.271 45.455 0.00 0.00 40.32 3.86
1768 2164 3.133901 TCAGGATAATACAAGCCGAAGCA 59.866 43.478 0.00 0.00 43.56 3.91
1769 2165 3.496130 CAGGATAATACAAGCCGAAGCAG 59.504 47.826 0.00 0.00 43.56 4.24
1770 2166 3.388024 AGGATAATACAAGCCGAAGCAGA 59.612 43.478 0.00 0.00 43.56 4.26
1771 2167 3.743396 GGATAATACAAGCCGAAGCAGAG 59.257 47.826 0.00 0.00 43.56 3.35
1772 2168 4.501571 GGATAATACAAGCCGAAGCAGAGA 60.502 45.833 0.00 0.00 43.56 3.10
1773 2169 2.593346 ATACAAGCCGAAGCAGAGAG 57.407 50.000 0.00 0.00 43.56 3.20
1774 2170 1.545841 TACAAGCCGAAGCAGAGAGA 58.454 50.000 0.00 0.00 43.56 3.10
1775 2171 0.901124 ACAAGCCGAAGCAGAGAGAT 59.099 50.000 0.00 0.00 43.56 2.75
1776 2172 1.277557 ACAAGCCGAAGCAGAGAGATT 59.722 47.619 0.00 0.00 43.56 2.40
1777 2173 2.289945 ACAAGCCGAAGCAGAGAGATTT 60.290 45.455 0.00 0.00 43.56 2.17
1778 2174 2.746362 CAAGCCGAAGCAGAGAGATTTT 59.254 45.455 0.00 0.00 43.56 1.82
1779 2175 3.064900 AGCCGAAGCAGAGAGATTTTT 57.935 42.857 0.00 0.00 43.56 1.94
1833 2235 5.337652 GCTGTACTCTCCATTGGTTTCTAGT 60.338 44.000 1.86 3.56 0.00 2.57
1836 2238 3.519913 ACTCTCCATTGGTTTCTAGTCCC 59.480 47.826 1.86 0.00 0.00 4.46
1887 2289 7.949565 ACAGATATAGTCATCTCCATCTTCAGT 59.050 37.037 0.00 0.00 32.83 3.41
1896 2298 1.134075 CATCTTCAGTGCAGCGTGC 59.866 57.895 0.00 3.44 45.29 5.34
1910 2312 1.576618 CGTGCGCCGATTTAACACG 60.577 57.895 4.18 0.00 46.57 4.49
1916 2318 2.849081 CCGATTTAACACGGCACCT 58.151 52.632 6.58 0.00 42.55 4.00
1917 2319 2.012937 CCGATTTAACACGGCACCTA 57.987 50.000 6.58 0.00 42.55 3.08
1918 2320 1.662122 CCGATTTAACACGGCACCTAC 59.338 52.381 6.58 0.00 42.55 3.18
1919 2321 1.322338 CGATTTAACACGGCACCTACG 59.678 52.381 0.00 0.00 37.36 3.51
1920 2322 2.609350 GATTTAACACGGCACCTACGA 58.391 47.619 0.00 0.00 34.93 3.43
1921 2323 1.782044 TTTAACACGGCACCTACGAC 58.218 50.000 0.00 0.00 34.93 4.34
1951 2353 2.297033 CCCTTTGGTGGTTCACAATGAG 59.703 50.000 0.38 0.00 35.86 2.90
1963 2365 4.371624 TCACAATGAGTTTCCACATCCT 57.628 40.909 0.00 0.00 0.00 3.24
1964 2366 4.326826 TCACAATGAGTTTCCACATCCTC 58.673 43.478 0.00 0.00 0.00 3.71
1993 2396 0.035152 TGCATGGTTTCGATGCCTCT 60.035 50.000 12.53 0.00 44.76 3.69
2086 2491 7.550196 TCGGGAAATCACTACTTTATGTAAACC 59.450 37.037 0.00 0.00 0.00 3.27
2111 2522 7.276658 CCAGCTCTCACATAAAAGTACTAACTG 59.723 40.741 0.00 0.00 35.62 3.16
2130 2541 2.291741 CTGAAGTTGGAACTGGCTTCAC 59.708 50.000 0.00 0.00 41.33 3.18
2142 2553 3.259123 ACTGGCTTCACAATTCAAATCCC 59.741 43.478 0.00 0.00 0.00 3.85
2150 2561 7.587037 TTCACAATTCAAATCCCCATATCTC 57.413 36.000 0.00 0.00 0.00 2.75
2190 2606 1.133482 ACTACCCTGCCAGCTGTTTTT 60.133 47.619 13.81 0.00 0.00 1.94
2225 2641 9.685828 GTAGTGTTTTTGCATAAATTAACCTGA 57.314 29.630 5.60 0.00 0.00 3.86
2226 2642 8.816640 AGTGTTTTTGCATAAATTAACCTGAG 57.183 30.769 5.60 0.00 0.00 3.35
2227 2643 8.421002 AGTGTTTTTGCATAAATTAACCTGAGT 58.579 29.630 5.60 0.00 0.00 3.41
2261 2677 0.321564 TGTGGCATGTGACTGGCTAC 60.322 55.000 8.16 8.16 41.93 3.58
2290 2706 1.828595 TCATGCAAAAGCTCATGCCAT 59.171 42.857 17.97 10.44 41.87 4.40
2581 2997 0.874390 TCGATTCAAACTGCTGGTGC 59.126 50.000 0.00 0.00 40.20 5.01
2604 3024 1.528309 GGACCGGTATGGCATTGGG 60.528 63.158 7.34 7.45 43.94 4.12
2617 3037 2.749621 GGCATTGGGAAGAACAGTACAG 59.250 50.000 0.00 0.00 0.00 2.74
2627 3047 7.068348 TGGGAAGAACAGTACAGTCATATCTAC 59.932 40.741 0.00 0.00 0.00 2.59
2664 3084 9.241919 TGCCTTTTCATTTCACATCTTCTAATA 57.758 29.630 0.00 0.00 0.00 0.98
2665 3085 9.727627 GCCTTTTCATTTCACATCTTCTAATAG 57.272 33.333 0.00 0.00 0.00 1.73
2934 3354 0.906775 TTCCGGGCCGAAGAAATAGT 59.093 50.000 30.79 0.00 0.00 2.12
2937 3357 1.296727 CGGGCCGAAGAAATAGTTCC 58.703 55.000 24.41 0.00 33.92 3.62
2965 3385 2.424842 ATTTTGCGGTGGCTGAGGGA 62.425 55.000 0.00 0.00 40.82 4.20
2969 3389 4.436998 CGGTGGCTGAGGGACGAC 62.437 72.222 0.00 0.00 0.00 4.34
3000 3424 7.778382 ACTTTCCTCCTTATGTTGTACTGTTTT 59.222 33.333 0.00 0.00 0.00 2.43
3022 3446 8.480066 GTTTTCTTTTATCAGCCTTCTTTTTCG 58.520 33.333 0.00 0.00 0.00 3.46
3023 3447 6.877611 TCTTTTATCAGCCTTCTTTTTCGT 57.122 33.333 0.00 0.00 0.00 3.85
3104 3528 2.166664 CCTAGAGGTAAACGCTTCTGCT 59.833 50.000 0.00 0.00 36.97 4.24
3155 3579 4.261741 GCATATCCTTGCAGGGTTACAATG 60.262 45.833 15.41 12.47 42.31 2.82
3170 3594 6.292811 GGGTTACAATGCAAAATCTTGTTGTG 60.293 38.462 7.86 0.00 34.43 3.33
3172 3596 7.436673 GGTTACAATGCAAAATCTTGTTGTGTA 59.563 33.333 7.86 0.00 34.43 2.90
3175 3599 6.073657 ACAATGCAAAATCTTGTTGTGTATGC 60.074 34.615 0.00 0.00 33.07 3.14
3176 3600 5.199024 TGCAAAATCTTGTTGTGTATGCT 57.801 34.783 0.00 0.00 34.79 3.79
3177 3601 5.599732 TGCAAAATCTTGTTGTGTATGCTT 58.400 33.333 0.00 0.00 34.79 3.91
3178 3602 5.462729 TGCAAAATCTTGTTGTGTATGCTTG 59.537 36.000 0.00 0.00 34.79 4.01
3179 3603 5.613142 GCAAAATCTTGTTGTGTATGCTTGC 60.613 40.000 0.00 0.00 34.79 4.01
3180 3604 5.458041 AAATCTTGTTGTGTATGCTTGCT 57.542 34.783 0.00 0.00 0.00 3.91
3181 3605 6.573664 AAATCTTGTTGTGTATGCTTGCTA 57.426 33.333 0.00 0.00 0.00 3.49
3182 3606 5.551760 ATCTTGTTGTGTATGCTTGCTAC 57.448 39.130 0.00 0.00 0.00 3.58
3183 3607 4.641396 TCTTGTTGTGTATGCTTGCTACT 58.359 39.130 0.00 0.00 0.00 2.57
3184 3608 4.690748 TCTTGTTGTGTATGCTTGCTACTC 59.309 41.667 0.00 0.00 0.00 2.59
3185 3609 3.334691 TGTTGTGTATGCTTGCTACTCC 58.665 45.455 0.00 0.00 0.00 3.85
3186 3610 2.678336 GTTGTGTATGCTTGCTACTCCC 59.322 50.000 0.00 0.00 0.00 4.30
3187 3611 2.187958 TGTGTATGCTTGCTACTCCCT 58.812 47.619 0.00 0.00 0.00 4.20
3190 3614 1.040646 TATGCTTGCTACTCCCTCCG 58.959 55.000 0.00 0.00 0.00 4.63
3191 3615 0.978146 ATGCTTGCTACTCCCTCCGT 60.978 55.000 0.00 0.00 0.00 4.69
3192 3616 1.192146 TGCTTGCTACTCCCTCCGTT 61.192 55.000 0.00 0.00 0.00 4.44
3194 3618 0.175989 CTTGCTACTCCCTCCGTTCC 59.824 60.000 0.00 0.00 0.00 3.62
3196 3620 1.684734 GCTACTCCCTCCGTTCCCA 60.685 63.158 0.00 0.00 0.00 4.37
3197 3621 1.262640 GCTACTCCCTCCGTTCCCAA 61.263 60.000 0.00 0.00 0.00 4.12
3198 3622 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
3203 3627 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3204 3628 4.475747 ACTCCCTCCGTTCCCAAATATAAA 59.524 41.667 0.00 0.00 0.00 1.40
3205 3629 5.133830 ACTCCCTCCGTTCCCAAATATAAAT 59.866 40.000 0.00 0.00 0.00 1.40
3206 3630 5.627135 TCCCTCCGTTCCCAAATATAAATC 58.373 41.667 0.00 0.00 0.00 2.17
3208 3632 6.068670 CCCTCCGTTCCCAAATATAAATCTT 58.931 40.000 0.00 0.00 0.00 2.40
3210 3634 7.069455 CCCTCCGTTCCCAAATATAAATCTTTT 59.931 37.037 0.00 0.00 0.00 2.27
3211 3635 8.474831 CCTCCGTTCCCAAATATAAATCTTTTT 58.525 33.333 0.00 0.00 0.00 1.94
3237 3780 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3241 3784 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3242 3785 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3246 3789 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3250 3793 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3253 3796 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3257 3800 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3258 3801 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3259 3802 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3260 3803 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3261 3804 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3301 3844 7.722795 CATACATCCGTATGTTGTATTCCAA 57.277 36.000 0.00 0.00 46.70 3.53
3302 3845 8.322906 CATACATCCGTATGTTGTATTCCAAT 57.677 34.615 0.00 0.00 46.70 3.16
3304 3847 7.026631 ACATCCGTATGTTGTATTCCAATTG 57.973 36.000 0.00 0.00 44.07 2.32
3305 3848 6.826231 ACATCCGTATGTTGTATTCCAATTGA 59.174 34.615 7.12 0.00 44.07 2.57
3306 3849 7.338196 ACATCCGTATGTTGTATTCCAATTGAA 59.662 33.333 7.12 0.00 44.07 2.69
3307 3850 7.689446 TCCGTATGTTGTATTCCAATTGAAA 57.311 32.000 7.12 0.00 36.33 2.69
3309 3852 8.187480 TCCGTATGTTGTATTCCAATTGAAATG 58.813 33.333 7.12 0.00 36.33 2.32
3310 3853 7.973388 CCGTATGTTGTATTCCAATTGAAATGT 59.027 33.333 7.12 0.00 36.33 2.71
3311 3854 9.009327 CGTATGTTGTATTCCAATTGAAATGTC 57.991 33.333 7.12 0.00 36.33 3.06
3345 3888 9.327731 ACTTATAGGAGTATTTAGGAATGGAGG 57.672 37.037 0.00 0.00 0.00 4.30
3346 3889 8.680820 TTATAGGAGTATTTAGGAATGGAGGG 57.319 38.462 0.00 0.00 0.00 4.30
3347 3890 5.171541 AGGAGTATTTAGGAATGGAGGGA 57.828 43.478 0.00 0.00 0.00 4.20
3349 3892 4.908481 GGAGTATTTAGGAATGGAGGGAGT 59.092 45.833 0.00 0.00 0.00 3.85
3350 3893 6.082707 GGAGTATTTAGGAATGGAGGGAGTA 58.917 44.000 0.00 0.00 0.00 2.59
3351 3894 6.211785 GGAGTATTTAGGAATGGAGGGAGTAG 59.788 46.154 0.00 0.00 0.00 2.57
3353 3896 7.140304 AGTATTTAGGAATGGAGGGAGTAGTT 58.860 38.462 0.00 0.00 0.00 2.24
3354 3897 5.693769 TTTAGGAATGGAGGGAGTAGTTG 57.306 43.478 0.00 0.00 0.00 3.16
3355 3898 3.491766 AGGAATGGAGGGAGTAGTTGA 57.508 47.619 0.00 0.00 0.00 3.18
3356 3899 3.379452 AGGAATGGAGGGAGTAGTTGAG 58.621 50.000 0.00 0.00 0.00 3.02
3357 3900 2.436173 GGAATGGAGGGAGTAGTTGAGG 59.564 54.545 0.00 0.00 0.00 3.86
3358 3901 1.501582 ATGGAGGGAGTAGTTGAGGC 58.498 55.000 0.00 0.00 0.00 4.70
3359 3902 0.413832 TGGAGGGAGTAGTTGAGGCT 59.586 55.000 0.00 0.00 0.00 4.58
3360 3903 0.827368 GGAGGGAGTAGTTGAGGCTG 59.173 60.000 0.00 0.00 0.00 4.85
3361 3904 0.176910 GAGGGAGTAGTTGAGGCTGC 59.823 60.000 0.00 0.00 0.00 5.25
3362 3905 0.545309 AGGGAGTAGTTGAGGCTGCA 60.545 55.000 0.50 0.00 0.00 4.41
3363 3906 0.543749 GGGAGTAGTTGAGGCTGCAT 59.456 55.000 0.50 0.00 0.00 3.96
3364 3907 1.661341 GGAGTAGTTGAGGCTGCATG 58.339 55.000 0.50 0.00 0.00 4.06
3365 3908 1.208052 GGAGTAGTTGAGGCTGCATGA 59.792 52.381 0.50 0.00 0.00 3.07
3366 3909 2.548875 GAGTAGTTGAGGCTGCATGAG 58.451 52.381 0.50 0.00 0.00 2.90
3367 3910 1.905215 AGTAGTTGAGGCTGCATGAGT 59.095 47.619 0.50 0.00 0.00 3.41
3368 3911 3.099905 AGTAGTTGAGGCTGCATGAGTA 58.900 45.455 0.50 0.00 0.00 2.59
3383 3926 7.308169 GCTGCATGAGTACATTATAGCATTCAA 60.308 37.037 0.00 0.00 35.80 2.69
3384 3927 8.625786 TGCATGAGTACATTATAGCATTCAAT 57.374 30.769 0.00 0.00 34.15 2.57
3385 3928 9.723601 TGCATGAGTACATTATAGCATTCAATA 57.276 29.630 0.00 0.00 34.15 1.90
3421 3964 9.935241 GAGATCTAGTCTGGATTATAATTGCAA 57.065 33.333 0.00 0.00 37.29 4.08
3438 3981 4.478206 TGCAACAGAACAAATCCCAAAA 57.522 36.364 0.00 0.00 0.00 2.44
3440 3983 4.874966 TGCAACAGAACAAATCCCAAAAAG 59.125 37.500 0.00 0.00 0.00 2.27
3442 3985 5.759763 GCAACAGAACAAATCCCAAAAAGAT 59.240 36.000 0.00 0.00 0.00 2.40
3443 3986 6.928492 GCAACAGAACAAATCCCAAAAAGATA 59.072 34.615 0.00 0.00 0.00 1.98
3444 3987 7.095649 GCAACAGAACAAATCCCAAAAAGATAC 60.096 37.037 0.00 0.00 0.00 2.24
3447 3990 9.362151 ACAGAACAAATCCCAAAAAGATACTTA 57.638 29.630 0.00 0.00 0.00 2.24
3448 3991 9.846248 CAGAACAAATCCCAAAAAGATACTTAG 57.154 33.333 0.00 0.00 0.00 2.18
3449 3992 9.807921 AGAACAAATCCCAAAAAGATACTTAGA 57.192 29.630 0.00 0.00 0.00 2.10
3451 3994 8.934023 ACAAATCCCAAAAAGATACTTAGACA 57.066 30.769 0.00 0.00 0.00 3.41
3452 3995 9.014297 ACAAATCCCAAAAAGATACTTAGACAG 57.986 33.333 0.00 0.00 0.00 3.51
3454 3997 8.794335 AATCCCAAAAAGATACTTAGACAGTC 57.206 34.615 0.00 0.00 36.88 3.51
3455 3998 7.554959 TCCCAAAAAGATACTTAGACAGTCT 57.445 36.000 8.50 8.50 36.88 3.24
3456 3999 7.974504 TCCCAAAAAGATACTTAGACAGTCTT 58.025 34.615 8.80 0.00 36.88 3.01
3457 4000 9.096823 TCCCAAAAAGATACTTAGACAGTCTTA 57.903 33.333 8.80 0.00 36.88 2.10
3458 4001 9.892130 CCCAAAAAGATACTTAGACAGTCTTAT 57.108 33.333 8.80 0.34 36.88 1.73
3465 4008 8.842280 AGATACTTAGACAGTCTTATTTCCTCG 58.158 37.037 8.80 0.00 36.88 4.63
3466 4009 8.749026 ATACTTAGACAGTCTTATTTCCTCGA 57.251 34.615 8.80 0.00 36.88 4.04
3467 4010 7.648039 ACTTAGACAGTCTTATTTCCTCGAT 57.352 36.000 8.80 0.00 0.00 3.59
3468 4011 7.708998 ACTTAGACAGTCTTATTTCCTCGATC 58.291 38.462 8.80 0.00 0.00 3.69
3469 4012 7.339721 ACTTAGACAGTCTTATTTCCTCGATCA 59.660 37.037 8.80 0.00 0.00 2.92
3470 4013 6.531503 AGACAGTCTTATTTCCTCGATCAA 57.468 37.500 0.00 0.00 0.00 2.57
3471 4014 6.568869 AGACAGTCTTATTTCCTCGATCAAG 58.431 40.000 0.00 0.00 0.00 3.02
3472 4015 5.112686 ACAGTCTTATTTCCTCGATCAAGC 58.887 41.667 0.00 0.00 0.00 4.01
3473 4016 5.105146 ACAGTCTTATTTCCTCGATCAAGCT 60.105 40.000 0.00 0.00 0.00 3.74
3474 4017 5.233902 CAGTCTTATTTCCTCGATCAAGCTG 59.766 44.000 0.00 0.00 0.00 4.24
3475 4018 5.105146 AGTCTTATTTCCTCGATCAAGCTGT 60.105 40.000 0.00 0.00 0.00 4.40
3476 4019 5.582665 GTCTTATTTCCTCGATCAAGCTGTT 59.417 40.000 0.00 0.00 0.00 3.16
3477 4020 6.757010 GTCTTATTTCCTCGATCAAGCTGTTA 59.243 38.462 0.00 0.00 0.00 2.41
3478 4021 7.439655 GTCTTATTTCCTCGATCAAGCTGTTAT 59.560 37.037 0.00 0.00 0.00 1.89
3479 4022 8.638873 TCTTATTTCCTCGATCAAGCTGTTATA 58.361 33.333 0.00 0.00 0.00 0.98
3480 4023 9.261180 CTTATTTCCTCGATCAAGCTGTTATAA 57.739 33.333 0.00 0.00 0.00 0.98
3481 4024 6.903883 TTTCCTCGATCAAGCTGTTATAAC 57.096 37.500 8.75 8.75 0.00 1.89
3482 4025 5.592104 TCCTCGATCAAGCTGTTATAACA 57.408 39.130 17.16 17.16 37.37 2.41
3483 4026 5.972935 TCCTCGATCAAGCTGTTATAACAA 58.027 37.500 18.55 4.70 38.66 2.83
3484 4027 6.042777 TCCTCGATCAAGCTGTTATAACAAG 58.957 40.000 18.55 13.36 38.66 3.16
3485 4028 5.812642 CCTCGATCAAGCTGTTATAACAAGT 59.187 40.000 18.55 6.65 38.66 3.16
3486 4029 6.019479 CCTCGATCAAGCTGTTATAACAAGTC 60.019 42.308 18.55 10.86 38.66 3.01
3489 4032 7.010460 TCGATCAAGCTGTTATAACAAGTCATG 59.990 37.037 18.55 13.07 38.66 3.07
3493 4036 9.448438 TCAAGCTGTTATAACAAGTCATGTAAT 57.552 29.630 18.55 0.00 42.99 1.89
3504 4047 6.690530 ACAAGTCATGTAATTCCCAACATTG 58.309 36.000 0.00 0.00 41.63 2.82
3512 4055 5.525378 TGTAATTCCCAACATTGTTTTGCAC 59.475 36.000 0.00 0.00 0.00 4.57
3527 4070 2.205022 TGCACCAGCTTAGCAAGATT 57.795 45.000 7.07 0.00 42.74 2.40
3529 4072 2.892852 TGCACCAGCTTAGCAAGATTTT 59.107 40.909 7.07 0.00 42.74 1.82
3533 4076 5.644644 CACCAGCTTAGCAAGATTTTAAGG 58.355 41.667 7.07 0.00 0.00 2.69
3534 4077 4.706962 ACCAGCTTAGCAAGATTTTAAGGG 59.293 41.667 7.07 0.00 0.00 3.95
3535 4078 4.706962 CCAGCTTAGCAAGATTTTAAGGGT 59.293 41.667 7.07 0.00 0.00 4.34
3536 4079 5.185828 CCAGCTTAGCAAGATTTTAAGGGTT 59.814 40.000 7.07 0.00 0.00 4.11
3537 4080 6.377146 CCAGCTTAGCAAGATTTTAAGGGTTA 59.623 38.462 7.07 0.00 0.00 2.85
3538 4081 7.251281 CAGCTTAGCAAGATTTTAAGGGTTAC 58.749 38.462 7.07 0.00 0.00 2.50
3539 4082 6.946009 AGCTTAGCAAGATTTTAAGGGTTACA 59.054 34.615 7.07 0.00 0.00 2.41
3540 4083 7.121315 AGCTTAGCAAGATTTTAAGGGTTACAG 59.879 37.037 7.07 0.00 0.00 2.74
3541 4084 7.628580 GCTTAGCAAGATTTTAAGGGTTACAGG 60.629 40.741 0.00 0.00 0.00 4.00
3542 4085 5.641155 AGCAAGATTTTAAGGGTTACAGGT 58.359 37.500 0.00 0.00 0.00 4.00
3543 4086 6.075315 AGCAAGATTTTAAGGGTTACAGGTT 58.925 36.000 0.00 0.00 0.00 3.50
3544 4087 6.208797 AGCAAGATTTTAAGGGTTACAGGTTC 59.791 38.462 0.00 0.00 0.00 3.62
3545 4088 6.015772 GCAAGATTTTAAGGGTTACAGGTTCA 60.016 38.462 0.00 0.00 0.00 3.18
3546 4089 7.593825 CAAGATTTTAAGGGTTACAGGTTCAG 58.406 38.462 0.00 0.00 0.00 3.02
3547 4090 7.086685 AGATTTTAAGGGTTACAGGTTCAGA 57.913 36.000 0.00 0.00 0.00 3.27
3548 4091 7.168905 AGATTTTAAGGGTTACAGGTTCAGAG 58.831 38.462 0.00 0.00 0.00 3.35
3549 4092 2.861147 AAGGGTTACAGGTTCAGAGC 57.139 50.000 0.00 0.00 0.00 4.09
3550 4093 1.729586 AGGGTTACAGGTTCAGAGCA 58.270 50.000 0.00 0.00 0.00 4.26
3551 4094 2.054799 AGGGTTACAGGTTCAGAGCAA 58.945 47.619 0.00 0.00 0.00 3.91
3552 4095 2.441750 AGGGTTACAGGTTCAGAGCAAA 59.558 45.455 0.00 0.00 0.00 3.68
3570 4113 2.555757 CAAAGCTCCCAAAGAAGAGTGG 59.444 50.000 0.00 0.00 32.47 4.00
3578 4121 7.001073 GCTCCCAAAGAAGAGTGGAATATAAT 58.999 38.462 0.00 0.00 37.03 1.28
3613 4157 5.471556 TTCCATCATTGTTTTGCATCAGT 57.528 34.783 0.00 0.00 0.00 3.41
3616 4160 5.927689 TCCATCATTGTTTTGCATCAGTTTC 59.072 36.000 0.00 0.00 0.00 2.78
3617 4161 5.697178 CCATCATTGTTTTGCATCAGTTTCA 59.303 36.000 0.00 0.00 0.00 2.69
3632 4176 3.447229 CAGTTTCACAAGGTTTCAAGGGT 59.553 43.478 0.00 0.00 0.00 4.34
3671 4215 6.571150 CGAAGCTCCCAAAGAAGAATGAAATT 60.571 38.462 0.00 0.00 40.93 1.82
3680 4226 8.981647 CCAAAGAAGAATGAAATTGTACCAAAG 58.018 33.333 0.00 0.00 36.07 2.77
3742 4288 2.832129 TGCACTCCAGTTTCCCTAGTAG 59.168 50.000 0.00 0.00 0.00 2.57
3752 4298 8.921205 TCCAGTTTCCCTAGTAGTTAATACATC 58.079 37.037 0.00 0.00 36.79 3.06
3763 4309 2.949644 GTTAATACATCGGCAGCCCTTT 59.050 45.455 5.63 0.00 0.00 3.11
3769 4315 1.334869 CATCGGCAGCCCTTTGAATAC 59.665 52.381 5.63 0.00 0.00 1.89
3793 4339 0.982852 ACATGATCCCCTCCTCGCAA 60.983 55.000 0.00 0.00 0.00 4.85
3794 4340 0.399454 CATGATCCCCTCCTCGCAAT 59.601 55.000 0.00 0.00 0.00 3.56
3803 4349 1.660167 CTCCTCGCAATGATTCAGCA 58.340 50.000 0.00 0.00 0.00 4.41
3805 4351 2.216046 TCCTCGCAATGATTCAGCATC 58.784 47.619 0.00 0.00 0.00 3.91
3812 4358 5.761726 TCGCAATGATTCAGCATCTAGAAAT 59.238 36.000 0.00 0.00 32.34 2.17
3819 4365 8.515695 TGATTCAGCATCTAGAAATTTGATGT 57.484 30.769 14.85 3.89 40.02 3.06
3820 4366 8.618677 TGATTCAGCATCTAGAAATTTGATGTC 58.381 33.333 14.85 9.45 40.02 3.06
3837 4383 8.722480 TTTGATGTCATGGTATGAAGTTAGAG 57.278 34.615 0.00 0.00 41.69 2.43
3844 4390 9.250624 GTCATGGTATGAAGTTAGAGATTGTAC 57.749 37.037 0.00 0.00 41.69 2.90
3875 4421 6.469782 AAGAAAGTTCAATTCTGAAAGGCA 57.530 33.333 0.00 0.00 43.18 4.75
3881 4427 5.048224 AGTTCAATTCTGAAAGGCACATCAG 60.048 40.000 7.61 7.61 43.18 2.90
3901 4447 5.007034 TCAGACAAACCTGTGAAGAAACAA 58.993 37.500 0.00 0.00 35.30 2.83
3903 4449 5.745294 CAGACAAACCTGTGAAGAAACAATG 59.255 40.000 0.00 0.00 35.30 2.82
3919 4465 2.366266 ACAATGTGCAGTCTGGCATTTT 59.634 40.909 1.14 0.00 46.92 1.82
3932 4478 5.183904 GTCTGGCATTTTCCTGTTTACAGAT 59.816 40.000 11.35 0.00 46.59 2.90
3962 4508 3.160269 CCTTTGATCTGGCAAGGAGTTT 58.840 45.455 7.44 0.00 0.00 2.66
3968 4514 5.569355 TGATCTGGCAAGGAGTTTAAATCA 58.431 37.500 0.00 0.00 0.00 2.57
4003 4549 2.494870 GGCTGAATTCTGACCTGCAAAT 59.505 45.455 15.79 0.00 0.00 2.32
4016 4562 5.106197 TGACCTGCAAATGTAGCACATAAAG 60.106 40.000 2.80 0.00 37.97 1.85
4030 4576 9.595357 GTAGCACATAAAGTTAAACTTTCTGTC 57.405 33.333 1.67 0.00 46.02 3.51
4039 4585 5.527582 AGTTAAACTTTCTGTCGTTGCATCT 59.472 36.000 0.00 0.00 0.00 2.90
4041 4587 3.111853 ACTTTCTGTCGTTGCATCTGA 57.888 42.857 0.00 0.00 0.00 3.27
4042 4588 3.668447 ACTTTCTGTCGTTGCATCTGAT 58.332 40.909 0.00 0.00 0.00 2.90
4043 4589 4.820897 ACTTTCTGTCGTTGCATCTGATA 58.179 39.130 0.00 0.00 0.00 2.15
4045 4591 5.120830 ACTTTCTGTCGTTGCATCTGATAAC 59.879 40.000 0.00 0.00 0.00 1.89
4046 4592 4.456280 TCTGTCGTTGCATCTGATAACT 57.544 40.909 0.00 0.00 0.00 2.24
4047 4593 5.576447 TCTGTCGTTGCATCTGATAACTA 57.424 39.130 0.00 0.00 0.00 2.24
4048 4594 6.149129 TCTGTCGTTGCATCTGATAACTAT 57.851 37.500 0.00 0.00 0.00 2.12
4049 4595 5.979517 TCTGTCGTTGCATCTGATAACTATG 59.020 40.000 0.00 0.00 0.00 2.23
4050 4596 5.660460 TGTCGTTGCATCTGATAACTATGT 58.340 37.500 0.00 0.00 0.00 2.29
4051 4597 5.748630 TGTCGTTGCATCTGATAACTATGTC 59.251 40.000 0.00 0.00 0.00 3.06
4052 4598 5.748630 GTCGTTGCATCTGATAACTATGTCA 59.251 40.000 0.00 0.00 0.00 3.58
4053 4599 6.255670 GTCGTTGCATCTGATAACTATGTCAA 59.744 38.462 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.110147 AGTCGAAGCAAGAGACGTCG 60.110 55.000 10.46 0.00 39.65 5.12
58 59 1.374343 CCACTACTAGCCGCAGTCGA 61.374 60.000 0.00 0.00 38.10 4.20
69 70 4.523173 CAGACAAGTTGAGGACCACTACTA 59.477 45.833 10.54 0.00 0.00 1.82
75 76 2.398588 AGACAGACAAGTTGAGGACCA 58.601 47.619 10.54 0.00 0.00 4.02
107 108 4.626046 ATGATGAACATGATCCACAACGGA 60.626 41.667 0.00 0.00 42.54 4.69
108 109 3.009026 TGATGAACATGATCCACAACGG 58.991 45.455 0.00 0.00 0.00 4.44
110 111 4.787563 GCGATGATGAACATGATCCACAAC 60.788 45.833 0.00 0.00 39.56 3.32
113 114 2.225019 GGCGATGATGAACATGATCCAC 59.775 50.000 0.00 0.00 39.56 4.02
136 137 1.482621 CTCGACGACGCCCATTGATG 61.483 60.000 1.48 0.00 39.58 3.07
137 138 1.226974 CTCGACGACGCCCATTGAT 60.227 57.895 1.48 0.00 39.58 2.57
140 141 1.940883 TAAGCTCGACGACGCCCATT 61.941 55.000 13.34 6.59 39.58 3.16
142 143 3.047718 CTAAGCTCGACGACGCCCA 62.048 63.158 13.34 4.01 39.58 5.36
143 144 2.278013 CTAAGCTCGACGACGCCC 60.278 66.667 13.34 0.00 39.58 6.13
144 145 2.278013 CCTAAGCTCGACGACGCC 60.278 66.667 13.34 0.00 39.58 5.68
145 146 2.262471 TTCCCTAAGCTCGACGACGC 62.262 60.000 1.48 10.17 39.58 5.19
146 147 0.248134 CTTCCCTAAGCTCGACGACG 60.248 60.000 0.00 0.00 41.26 5.12
147 148 0.100861 CCTTCCCTAAGCTCGACGAC 59.899 60.000 0.00 0.00 0.00 4.34
148 149 1.664321 GCCTTCCCTAAGCTCGACGA 61.664 60.000 0.00 0.00 0.00 4.20
149 150 1.227002 GCCTTCCCTAAGCTCGACG 60.227 63.158 0.00 0.00 0.00 5.12
150 151 0.466124 ATGCCTTCCCTAAGCTCGAC 59.534 55.000 0.00 0.00 0.00 4.20
151 152 0.753262 GATGCCTTCCCTAAGCTCGA 59.247 55.000 0.00 0.00 0.00 4.04
152 153 0.250081 GGATGCCTTCCCTAAGCTCG 60.250 60.000 0.00 0.00 38.75 5.03
153 154 3.715871 GGATGCCTTCCCTAAGCTC 57.284 57.895 0.00 0.00 38.75 4.09
167 168 0.652592 GCGATCACTTTCACGGGATG 59.347 55.000 0.00 0.00 0.00 3.51
170 171 3.081133 CGCGATCACTTTCACGGG 58.919 61.111 0.00 0.00 0.00 5.28
197 199 3.461773 CGTCCATGGAGCCCTCGT 61.462 66.667 16.81 0.00 0.00 4.18
199 201 1.910580 TTTCCGTCCATGGAGCCCTC 61.911 60.000 16.81 1.33 39.72 4.30
203 205 1.002624 TGGTTTCCGTCCATGGAGC 60.003 57.895 16.81 9.43 39.72 4.70
220 222 0.247460 TGAATGCTCCTCTGGTCGTG 59.753 55.000 0.00 0.00 0.00 4.35
226 228 1.998315 CGAGTTGTGAATGCTCCTCTG 59.002 52.381 0.00 0.00 0.00 3.35
238 240 3.454375 ACTACTTGTTCACCGAGTTGTG 58.546 45.455 0.00 0.00 40.59 3.33
239 241 3.131577 TGACTACTTGTTCACCGAGTTGT 59.868 43.478 0.00 0.00 43.50 3.32
241 243 4.602340 ATGACTACTTGTTCACCGAGTT 57.398 40.909 0.00 0.00 38.76 3.01
248 250 4.202357 ACCTCAGCAATGACTACTTGTTCA 60.202 41.667 0.00 0.00 0.00 3.18
261 263 0.615331 ACACCATCGACCTCAGCAAT 59.385 50.000 0.00 0.00 0.00 3.56
265 267 2.607187 GTTGTACACCATCGACCTCAG 58.393 52.381 0.00 0.00 0.00 3.35
272 274 2.449525 CCGCCGTTGTACACCATCG 61.450 63.158 0.00 0.00 36.30 3.84
288 290 1.153628 CTCCGTCTTTGGCTACCCG 60.154 63.158 0.00 0.00 0.00 5.28
293 295 1.416401 TCTTCAACTCCGTCTTTGGCT 59.584 47.619 0.00 0.00 0.00 4.75
297 299 2.544267 CGCTTTCTTCAACTCCGTCTTT 59.456 45.455 0.00 0.00 0.00 2.52
301 303 1.228657 GCCGCTTTCTTCAACTCCGT 61.229 55.000 0.00 0.00 0.00 4.69
302 304 1.497722 GCCGCTTTCTTCAACTCCG 59.502 57.895 0.00 0.00 0.00 4.63
307 309 1.070786 ACTCCGCCGCTTTCTTCAA 59.929 52.632 0.00 0.00 0.00 2.69
316 318 3.488090 GTTGTAGCACTCCGCCGC 61.488 66.667 0.00 0.00 44.04 6.53
332 334 1.841663 GCCTGACACGCAACAATCGT 61.842 55.000 0.00 0.00 41.28 3.73
342 344 2.348666 GCAATACAGTTAGCCTGACACG 59.651 50.000 0.00 0.00 44.49 4.49
348 350 1.278127 ACCGTGCAATACAGTTAGCCT 59.722 47.619 0.00 0.00 0.00 4.58
353 355 1.144969 CGACACCGTGCAATACAGTT 58.855 50.000 0.00 0.00 0.00 3.16
388 390 0.694444 CCCTGGCCCACCTAGTACAT 60.694 60.000 0.00 0.00 36.63 2.29
456 458 2.122167 CGCTTAGGACGGAGCTCCT 61.122 63.158 29.73 17.05 40.23 3.69
480 482 3.515901 AGAGGGCGAAGAAGAAGTTACAT 59.484 43.478 0.00 0.00 0.00 2.29
484 486 1.276705 GGAGAGGGCGAAGAAGAAGTT 59.723 52.381 0.00 0.00 0.00 2.66
485 487 0.899019 GGAGAGGGCGAAGAAGAAGT 59.101 55.000 0.00 0.00 0.00 3.01
515 517 0.586319 CGTCAACGGCACACAAGAAT 59.414 50.000 0.00 0.00 35.37 2.40
525 527 0.098728 AATGCAATAGCGTCAACGGC 59.901 50.000 4.54 0.00 46.23 5.68
526 528 1.130373 ACAATGCAATAGCGTCAACGG 59.870 47.619 4.54 0.00 46.23 4.44
554 557 0.538977 AGGTCTCGTCGGACTGGAAA 60.539 55.000 6.57 0.00 36.55 3.13
577 581 1.274703 ATCCCGCCCAGTCACAAGAT 61.275 55.000 0.00 0.00 0.00 2.40
578 582 1.488705 AATCCCGCCCAGTCACAAGA 61.489 55.000 0.00 0.00 0.00 3.02
579 583 1.002134 AATCCCGCCCAGTCACAAG 60.002 57.895 0.00 0.00 0.00 3.16
580 584 1.303236 CAATCCCGCCCAGTCACAA 60.303 57.895 0.00 0.00 0.00 3.33
581 585 2.184020 CTCAATCCCGCCCAGTCACA 62.184 60.000 0.00 0.00 0.00 3.58
582 586 1.450312 CTCAATCCCGCCCAGTCAC 60.450 63.158 0.00 0.00 0.00 3.67
583 587 1.612146 TCTCAATCCCGCCCAGTCA 60.612 57.895 0.00 0.00 0.00 3.41
584 588 1.144936 CTCTCAATCCCGCCCAGTC 59.855 63.158 0.00 0.00 0.00 3.51
585 589 1.306141 TCTCTCAATCCCGCCCAGT 60.306 57.895 0.00 0.00 0.00 4.00
586 590 1.445095 CTCTCTCAATCCCGCCCAG 59.555 63.158 0.00 0.00 0.00 4.45
623 627 1.827399 AAGACCAAGCCGATGTCCGT 61.827 55.000 0.00 0.00 36.31 4.69
659 663 3.353836 CGCCACGTCAAACCCTGG 61.354 66.667 0.00 0.00 0.00 4.45
703 1032 2.285024 CCCGAAACCCCACGGTCTA 61.285 63.158 0.00 0.00 43.71 2.59
728 1057 0.901580 CAAATCAGGCTGGGCTGGTT 60.902 55.000 21.01 18.27 0.00 3.67
765 1094 2.288152 ACCAAAACATGTGCGAATGTCC 60.288 45.455 0.00 0.00 39.89 4.02
766 1095 2.725723 CACCAAAACATGTGCGAATGTC 59.274 45.455 0.00 0.00 39.89 3.06
772 1101 0.318614 GGGTCACCAAAACATGTGCG 60.319 55.000 0.00 0.00 36.50 5.34
777 1106 1.000731 CAATGCGGGTCACCAAAACAT 59.999 47.619 0.00 0.00 36.13 2.71
794 1123 0.843984 CGGGTTAGGACATCCCCAAT 59.156 55.000 0.00 0.00 38.09 3.16
799 1128 0.746923 GCAACCGGGTTAGGACATCC 60.747 60.000 12.95 0.00 34.73 3.51
804 1133 3.655615 AATAATGCAACCGGGTTAGGA 57.344 42.857 12.95 8.87 34.73 2.94
853 1185 0.170339 CTCGTCATACGTGTGCCTCA 59.830 55.000 7.52 0.00 43.14 3.86
866 1198 3.399181 GTGGATGGGGCCTCGTCA 61.399 66.667 26.30 9.85 0.00 4.35
889 1221 1.580942 CACGTGGATGCCTTTGTGG 59.419 57.895 7.95 0.00 39.35 4.17
890 1222 1.580942 CCACGTGGATGCCTTTGTG 59.419 57.895 31.31 0.00 37.39 3.33
891 1223 1.603455 CCCACGTGGATGCCTTTGT 60.603 57.895 36.07 0.00 37.39 2.83
892 1224 2.993471 GCCCACGTGGATGCCTTTG 61.993 63.158 36.07 17.00 37.39 2.77
893 1225 2.676471 GCCCACGTGGATGCCTTT 60.676 61.111 36.07 0.00 37.39 3.11
894 1226 4.740822 GGCCCACGTGGATGCCTT 62.741 66.667 34.66 0.00 38.84 4.35
977 1309 5.369404 TGAGGATAGAGTGAGACAGAGAGAT 59.631 44.000 0.00 0.00 0.00 2.75
983 1315 4.099266 CCCTTTGAGGATAGAGTGAGACAG 59.901 50.000 0.00 0.00 37.67 3.51
984 1316 4.026744 CCCTTTGAGGATAGAGTGAGACA 58.973 47.826 0.00 0.00 37.67 3.41
985 1317 3.386402 CCCCTTTGAGGATAGAGTGAGAC 59.614 52.174 0.00 0.00 37.67 3.36
1441 1776 2.434185 GCAATCTCACCGGCGTCA 60.434 61.111 6.01 0.00 0.00 4.35
1478 1813 1.971695 GAAGCGTGAAACCCCCAGG 60.972 63.158 0.00 0.00 40.04 4.45
1481 1816 2.626780 GCAGAAGCGTGAAACCCCC 61.627 63.158 0.00 0.00 0.00 5.40
1504 1839 3.589988 CTTGGCCTACTGTCTACTGTTG 58.410 50.000 3.32 0.00 0.00 3.33
1531 1899 2.614057 CCGGTCCAGATAAAATGCTGTC 59.386 50.000 0.00 0.00 0.00 3.51
1549 1917 1.547675 CCCATGTAATTCCCCATCCGG 60.548 57.143 0.00 0.00 0.00 5.14
1551 1919 3.833559 ATCCCATGTAATTCCCCATCC 57.166 47.619 0.00 0.00 0.00 3.51
1553 1921 3.925370 AGCTATCCCATGTAATTCCCCAT 59.075 43.478 0.00 0.00 0.00 4.00
1554 1922 3.330701 GAGCTATCCCATGTAATTCCCCA 59.669 47.826 0.00 0.00 0.00 4.96
1566 1937 5.382616 TCTATTTGTAGACGAGCTATCCCA 58.617 41.667 0.00 0.00 0.00 4.37
1575 1946 6.505044 TGCACTTACTCTATTTGTAGACGA 57.495 37.500 0.00 0.00 0.00 4.20
1618 1990 5.049543 GCAACATATTGTGCAACCATTTGTT 60.050 36.000 0.00 0.00 42.03 2.83
1633 2005 1.065401 CACAATCGCCGGCAACATATT 59.935 47.619 28.98 14.02 0.00 1.28
1664 2036 1.317319 CGCGATTTCAATTTCGGCAAC 59.683 47.619 0.00 0.00 35.93 4.17
1665 2037 1.068885 ACGCGATTTCAATTTCGGCAA 60.069 42.857 15.93 0.00 35.93 4.52
1667 2039 0.907171 CACGCGATTTCAATTTCGGC 59.093 50.000 15.93 0.00 35.93 5.54
1668 2040 2.241259 ACACGCGATTTCAATTTCGG 57.759 45.000 15.93 0.00 35.93 4.30
1669 2041 2.338228 CCAACACGCGATTTCAATTTCG 59.662 45.455 15.93 0.00 38.37 3.46
1670 2042 2.090503 GCCAACACGCGATTTCAATTTC 59.909 45.455 15.93 0.00 0.00 2.17
1671 2043 2.058057 GCCAACACGCGATTTCAATTT 58.942 42.857 15.93 0.00 0.00 1.82
1672 2044 1.269448 AGCCAACACGCGATTTCAATT 59.731 42.857 15.93 0.00 0.00 2.32
1675 2047 0.793861 GTAGCCAACACGCGATTTCA 59.206 50.000 15.93 0.00 0.00 2.69
1703 2092 0.736325 CCTAGCAAGTGAACCCGACG 60.736 60.000 0.00 0.00 0.00 5.12
1704 2093 0.606604 TCCTAGCAAGTGAACCCGAC 59.393 55.000 0.00 0.00 0.00 4.79
1705 2094 1.480954 GATCCTAGCAAGTGAACCCGA 59.519 52.381 0.00 0.00 0.00 5.14
1714 2103 3.257469 TCAAGCACTGATCCTAGCAAG 57.743 47.619 0.00 0.00 0.00 4.01
1724 2113 3.450096 AGCACTATCTCATCAAGCACTGA 59.550 43.478 0.00 0.00 38.81 3.41
1742 2131 2.802816 CGGCTTGTATTATCCTGAGCAC 59.197 50.000 0.00 0.00 32.01 4.40
1753 2142 2.497675 TCTCTCTGCTTCGGCTTGTATT 59.502 45.455 0.00 0.00 42.37 1.89
1755 2144 1.545841 TCTCTCTGCTTCGGCTTGTA 58.454 50.000 0.00 0.00 42.37 2.41
1780 2176 5.242393 AGCTGCAAATCTCTCTGCTTAAAAA 59.758 36.000 1.02 0.00 39.38 1.94
1781 2177 4.763793 AGCTGCAAATCTCTCTGCTTAAAA 59.236 37.500 1.02 0.00 39.38 1.52
1782 2178 4.330250 AGCTGCAAATCTCTCTGCTTAAA 58.670 39.130 1.02 0.00 39.38 1.52
1783 2179 3.947868 AGCTGCAAATCTCTCTGCTTAA 58.052 40.909 1.02 0.00 39.38 1.85
1784 2180 3.623906 AGCTGCAAATCTCTCTGCTTA 57.376 42.857 1.02 0.00 39.38 3.09
1833 2235 2.264480 CAACACGCTCCGATGGGA 59.736 61.111 0.00 0.00 41.08 4.37
1836 2238 2.316867 TGTGCAACACGCTCCGATG 61.317 57.895 0.00 0.00 45.67 3.84
1910 2312 2.585247 GGATGCGTCGTAGGTGCC 60.585 66.667 0.00 0.00 0.00 5.01
1914 2316 2.728817 GGGAGGATGCGTCGTAGG 59.271 66.667 0.14 0.00 0.00 3.18
1915 2317 1.392710 AAGGGGAGGATGCGTCGTAG 61.393 60.000 0.14 0.00 0.00 3.51
1916 2318 0.974010 AAAGGGGAGGATGCGTCGTA 60.974 55.000 0.14 0.00 0.00 3.43
1917 2319 2.291043 AAAGGGGAGGATGCGTCGT 61.291 57.895 0.00 0.00 0.00 4.34
1918 2320 1.815421 CAAAGGGGAGGATGCGTCG 60.815 63.158 0.00 0.00 0.00 5.12
1919 2321 1.452108 CCAAAGGGGAGGATGCGTC 60.452 63.158 0.00 0.00 40.01 5.19
1920 2322 2.231380 ACCAAAGGGGAGGATGCGT 61.231 57.895 0.00 0.00 41.15 5.24
1921 2323 1.750399 CACCAAAGGGGAGGATGCG 60.750 63.158 0.00 0.00 41.15 4.73
1951 2353 4.783764 AAAATTCCGAGGATGTGGAAAC 57.216 40.909 0.00 0.00 46.65 2.78
1993 2396 7.768240 TCTTGAGAAACAGAGTAATGCGTATA 58.232 34.615 0.00 0.00 0.00 1.47
2086 2491 8.029522 TCAGTTAGTACTTTTATGTGAGAGCTG 58.970 37.037 0.00 0.00 30.26 4.24
2111 2522 2.297701 TGTGAAGCCAGTTCCAACTTC 58.702 47.619 0.00 0.00 37.08 3.01
2130 2541 6.309357 TCAGGAGATATGGGGATTTGAATTG 58.691 40.000 0.00 0.00 0.00 2.32
2142 2553 7.443575 CAGTTTGGATTAGTTCAGGAGATATGG 59.556 40.741 0.00 0.00 0.00 2.74
2150 2561 6.371825 GGTAGTTCAGTTTGGATTAGTTCAGG 59.628 42.308 0.00 0.00 0.00 3.86
2214 2630 9.269453 GTGTACAAACTCTACTCAGGTTAATTT 57.731 33.333 0.00 0.00 0.00 1.82
2225 2641 4.202315 TGCCACATGTGTACAAACTCTACT 60.202 41.667 23.79 0.00 0.00 2.57
2226 2642 4.062293 TGCCACATGTGTACAAACTCTAC 58.938 43.478 23.79 0.42 0.00 2.59
2227 2643 4.344359 TGCCACATGTGTACAAACTCTA 57.656 40.909 23.79 0.00 0.00 2.43
2290 2706 2.022934 TCACTGCAGCACATCAACAAA 58.977 42.857 15.27 0.00 0.00 2.83
2542 2958 8.767944 AATCGATCGAAAACACATAATTTAGC 57.232 30.769 23.50 0.00 0.00 3.09
2555 2971 4.378356 CCAGCAGTTTGAATCGATCGAAAA 60.378 41.667 23.50 15.21 33.14 2.29
2581 2997 1.691196 ATGCCATACCGGTCCATTTG 58.309 50.000 12.40 2.14 36.97 2.32
2585 3001 1.225983 CCAATGCCATACCGGTCCA 59.774 57.895 12.40 4.82 36.97 4.02
2588 3004 0.106719 CTTCCCAATGCCATACCGGT 60.107 55.000 13.98 13.98 36.97 5.28
2589 3005 0.182537 TCTTCCCAATGCCATACCGG 59.817 55.000 0.00 0.00 38.11 5.28
2604 3024 8.228035 AGGTAGATATGACTGTACTGTTCTTC 57.772 38.462 6.86 4.15 0.00 2.87
2617 3037 5.758784 GGCAAAAGGTGTAGGTAGATATGAC 59.241 44.000 0.00 0.00 0.00 3.06
2627 3047 4.871933 ATGAAAAGGCAAAAGGTGTAGG 57.128 40.909 0.00 0.00 0.00 3.18
2664 3084 5.308825 GCCTGCATAGACATTGGTTATACT 58.691 41.667 0.00 0.00 0.00 2.12
2665 3085 4.455877 GGCCTGCATAGACATTGGTTATAC 59.544 45.833 0.00 0.00 0.00 1.47
2924 3344 9.678941 AAAATTCAACTTCGGAACTATTTCTTC 57.321 29.630 0.00 0.00 31.71 2.87
2934 3354 2.359531 ACCGCAAAATTCAACTTCGGAA 59.640 40.909 4.71 0.00 38.79 4.30
2937 3357 2.050691 CCACCGCAAAATTCAACTTCG 58.949 47.619 0.00 0.00 0.00 3.79
2965 3385 2.257676 GAGGAAAGTCCGCGTCGT 59.742 61.111 4.92 0.00 42.75 4.34
2969 3389 1.134788 ACATAAGGAGGAAAGTCCGCG 60.135 52.381 0.00 0.00 42.75 6.46
3000 3424 6.485313 TGACGAAAAAGAAGGCTGATAAAAGA 59.515 34.615 0.00 0.00 0.00 2.52
3022 3446 9.503427 GATGGCATAGTTATTACAAAGTTTGAC 57.497 33.333 22.23 9.20 0.00 3.18
3023 3447 9.461312 AGATGGCATAGTTATTACAAAGTTTGA 57.539 29.630 22.23 0.75 0.00 2.69
3104 3528 5.009210 AGCAAAACGTTCAGCTAAATAACCA 59.991 36.000 21.45 0.00 35.19 3.67
3155 3579 5.613142 GCAAGCATACACAACAAGATTTTGC 60.613 40.000 0.00 0.00 37.85 3.68
3170 3594 1.269831 CGGAGGGAGTAGCAAGCATAC 60.270 57.143 0.00 0.00 0.00 2.39
3172 3596 0.978146 ACGGAGGGAGTAGCAAGCAT 60.978 55.000 0.00 0.00 0.00 3.79
3175 3599 0.175989 GGAACGGAGGGAGTAGCAAG 59.824 60.000 0.00 0.00 0.00 4.01
3176 3600 1.262640 GGGAACGGAGGGAGTAGCAA 61.263 60.000 0.00 0.00 0.00 3.91
3177 3601 1.684734 GGGAACGGAGGGAGTAGCA 60.685 63.158 0.00 0.00 0.00 3.49
3178 3602 1.262640 TTGGGAACGGAGGGAGTAGC 61.263 60.000 0.00 0.00 0.00 3.58
3179 3603 1.272807 TTTGGGAACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
3180 3604 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3181 3605 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3182 3606 4.699925 TTATATTTGGGAACGGAGGGAG 57.300 45.455 0.00 0.00 0.00 4.30
3183 3607 5.371472 AGATTTATATTTGGGAACGGAGGGA 59.629 40.000 0.00 0.00 0.00 4.20
3184 3608 5.631119 AGATTTATATTTGGGAACGGAGGG 58.369 41.667 0.00 0.00 0.00 4.30
3185 3609 7.582667 AAAGATTTATATTTGGGAACGGAGG 57.417 36.000 0.00 0.00 0.00 4.30
3205 3629 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
3208 3632 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
3211 3635 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3212 3636 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3213 3637 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3214 3638 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3215 3639 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3217 3641 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3218 3642 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3219 3643 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3220 3644 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3223 3766 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3226 3769 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3228 3771 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3229 3772 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3230 3773 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3232 3775 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3233 3776 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3237 3780 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3241 3784 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
3278 3821 8.783093 CAATTGGAATACAACATACGGATGTAT 58.217 33.333 15.10 8.21 45.93 2.29
3279 3822 7.988028 TCAATTGGAATACAACATACGGATGTA 59.012 33.333 15.10 0.00 45.93 2.29
3282 3825 7.873719 TTCAATTGGAATACAACATACGGAT 57.126 32.000 5.42 0.00 42.94 4.18
3283 3826 7.689446 TTTCAATTGGAATACAACATACGGA 57.311 32.000 5.42 0.00 42.94 4.69
3284 3827 7.973388 ACATTTCAATTGGAATACAACATACGG 59.027 33.333 11.72 0.00 42.94 4.02
3285 3828 8.909708 ACATTTCAATTGGAATACAACATACG 57.090 30.769 11.72 0.00 42.94 3.06
3320 3863 8.763601 CCCTCCATTCCTAAATACTCCTATAAG 58.236 40.741 0.00 0.00 0.00 1.73
3321 3864 8.470109 TCCCTCCATTCCTAAATACTCCTATAA 58.530 37.037 0.00 0.00 0.00 0.98
3322 3865 8.019537 TCCCTCCATTCCTAAATACTCCTATA 57.980 38.462 0.00 0.00 0.00 1.31
3324 3867 6.125561 ACTCCCTCCATTCCTAAATACTCCTA 60.126 42.308 0.00 0.00 0.00 2.94
3325 3868 5.158889 CTCCCTCCATTCCTAAATACTCCT 58.841 45.833 0.00 0.00 0.00 3.69
3326 3869 4.908481 ACTCCCTCCATTCCTAAATACTCC 59.092 45.833 0.00 0.00 0.00 3.85
3328 3871 6.694611 ACTACTCCCTCCATTCCTAAATACT 58.305 40.000 0.00 0.00 0.00 2.12
3329 3872 6.997942 ACTACTCCCTCCATTCCTAAATAC 57.002 41.667 0.00 0.00 0.00 1.89
3330 3873 7.136885 TCAACTACTCCCTCCATTCCTAAATA 58.863 38.462 0.00 0.00 0.00 1.40
3332 3875 5.347124 TCAACTACTCCCTCCATTCCTAAA 58.653 41.667 0.00 0.00 0.00 1.85
3333 3876 4.955335 TCAACTACTCCCTCCATTCCTAA 58.045 43.478 0.00 0.00 0.00 2.69
3334 3877 4.547671 CTCAACTACTCCCTCCATTCCTA 58.452 47.826 0.00 0.00 0.00 2.94
3335 3878 3.379452 CTCAACTACTCCCTCCATTCCT 58.621 50.000 0.00 0.00 0.00 3.36
3337 3880 2.158885 GCCTCAACTACTCCCTCCATTC 60.159 54.545 0.00 0.00 0.00 2.67
3339 3882 1.008938 AGCCTCAACTACTCCCTCCAT 59.991 52.381 0.00 0.00 0.00 3.41
3340 3883 0.413832 AGCCTCAACTACTCCCTCCA 59.586 55.000 0.00 0.00 0.00 3.86
3341 3884 0.827368 CAGCCTCAACTACTCCCTCC 59.173 60.000 0.00 0.00 0.00 4.30
3342 3885 0.176910 GCAGCCTCAACTACTCCCTC 59.823 60.000 0.00 0.00 0.00 4.30
3343 3886 0.545309 TGCAGCCTCAACTACTCCCT 60.545 55.000 0.00 0.00 0.00 4.20
3345 3888 1.208052 TCATGCAGCCTCAACTACTCC 59.792 52.381 0.00 0.00 0.00 3.85
3346 3889 2.093764 ACTCATGCAGCCTCAACTACTC 60.094 50.000 0.00 0.00 0.00 2.59
3347 3890 1.905215 ACTCATGCAGCCTCAACTACT 59.095 47.619 0.00 0.00 0.00 2.57
3349 3892 2.831526 TGTACTCATGCAGCCTCAACTA 59.168 45.455 0.00 0.00 0.00 2.24
3350 3893 1.625315 TGTACTCATGCAGCCTCAACT 59.375 47.619 0.00 0.00 0.00 3.16
3351 3894 2.099141 TGTACTCATGCAGCCTCAAC 57.901 50.000 0.00 0.00 0.00 3.18
3353 3896 4.694760 ATAATGTACTCATGCAGCCTCA 57.305 40.909 0.00 0.00 34.19 3.86
3354 3897 4.629200 GCTATAATGTACTCATGCAGCCTC 59.371 45.833 0.00 0.00 34.19 4.70
3355 3898 4.040829 TGCTATAATGTACTCATGCAGCCT 59.959 41.667 0.00 0.00 34.71 4.58
3356 3899 4.318332 TGCTATAATGTACTCATGCAGCC 58.682 43.478 0.00 0.00 34.71 4.85
3357 3900 6.148315 TGAATGCTATAATGTACTCATGCAGC 59.852 38.462 0.00 0.00 34.44 5.25
3358 3901 7.662604 TGAATGCTATAATGTACTCATGCAG 57.337 36.000 0.00 0.00 34.44 4.41
3359 3902 8.625786 ATTGAATGCTATAATGTACTCATGCA 57.374 30.769 0.00 0.00 35.07 3.96
3394 3937 9.319060 TGCAATTATAATCCAGACTAGATCTCT 57.681 33.333 0.00 0.00 34.41 3.10
3418 3961 5.115480 TCTTTTTGGGATTTGTTCTGTTGC 58.885 37.500 0.00 0.00 0.00 4.17
3421 3964 7.839680 AGTATCTTTTTGGGATTTGTTCTGT 57.160 32.000 0.00 0.00 0.00 3.41
3440 3983 8.838365 TCGAGGAAATAAGACTGTCTAAGTATC 58.162 37.037 11.30 6.40 40.07 2.24
3442 3985 8.749026 ATCGAGGAAATAAGACTGTCTAAGTA 57.251 34.615 11.30 0.24 40.07 2.24
3443 3986 7.339721 TGATCGAGGAAATAAGACTGTCTAAGT 59.660 37.037 11.30 0.00 43.85 2.24
3444 3987 7.708051 TGATCGAGGAAATAAGACTGTCTAAG 58.292 38.462 11.30 0.00 0.00 2.18
3447 3990 6.531503 TTGATCGAGGAAATAAGACTGTCT 57.468 37.500 4.06 4.06 0.00 3.41
3448 3991 5.233263 GCTTGATCGAGGAAATAAGACTGTC 59.767 44.000 12.06 0.00 0.00 3.51
3449 3992 5.105146 AGCTTGATCGAGGAAATAAGACTGT 60.105 40.000 12.06 0.00 0.00 3.55
3451 3994 5.105146 ACAGCTTGATCGAGGAAATAAGACT 60.105 40.000 12.06 0.00 0.00 3.24
3452 3995 5.112686 ACAGCTTGATCGAGGAAATAAGAC 58.887 41.667 12.06 0.00 0.00 3.01
3454 3997 7.721286 ATAACAGCTTGATCGAGGAAATAAG 57.279 36.000 12.06 0.00 0.00 1.73
3455 3998 9.042008 GTTATAACAGCTTGATCGAGGAAATAA 57.958 33.333 12.06 3.97 0.00 1.40
3456 3999 8.201464 TGTTATAACAGCTTGATCGAGGAAATA 58.799 33.333 14.35 0.00 34.30 1.40
3457 4000 7.047891 TGTTATAACAGCTTGATCGAGGAAAT 58.952 34.615 14.35 0.00 34.30 2.17
3458 4001 6.403049 TGTTATAACAGCTTGATCGAGGAAA 58.597 36.000 14.35 0.00 34.30 3.13
3459 4002 5.972935 TGTTATAACAGCTTGATCGAGGAA 58.027 37.500 14.35 0.00 34.30 3.36
3460 4003 5.592104 TGTTATAACAGCTTGATCGAGGA 57.408 39.130 14.35 0.00 34.30 3.71
3461 4004 5.812642 ACTTGTTATAACAGCTTGATCGAGG 59.187 40.000 17.36 0.00 40.50 4.63
3462 4005 6.531594 TGACTTGTTATAACAGCTTGATCGAG 59.468 38.462 17.36 11.39 40.50 4.04
3463 4006 6.394809 TGACTTGTTATAACAGCTTGATCGA 58.605 36.000 17.36 0.00 40.50 3.59
3464 4007 6.647212 TGACTTGTTATAACAGCTTGATCG 57.353 37.500 17.36 4.29 40.50 3.69
3465 4008 7.978982 ACATGACTTGTTATAACAGCTTGATC 58.021 34.615 17.36 10.68 40.50 2.92
3466 4009 7.928307 ACATGACTTGTTATAACAGCTTGAT 57.072 32.000 17.36 4.33 40.50 2.57
3467 4010 8.840833 TTACATGACTTGTTATAACAGCTTGA 57.159 30.769 17.36 2.89 40.50 3.02
3470 4013 8.893727 GGAATTACATGACTTGTTATAACAGCT 58.106 33.333 17.36 7.49 40.50 4.24
3471 4014 8.129211 GGGAATTACATGACTTGTTATAACAGC 58.871 37.037 17.36 11.89 40.50 4.40
3472 4015 9.173021 TGGGAATTACATGACTTGTTATAACAG 57.827 33.333 17.36 13.87 40.50 3.16
3473 4016 9.521841 TTGGGAATTACATGACTTGTTATAACA 57.478 29.630 14.35 14.35 39.87 2.41
3474 4017 9.783256 GTTGGGAATTACATGACTTGTTATAAC 57.217 33.333 8.75 8.75 39.87 1.89
3475 4018 9.521841 TGTTGGGAATTACATGACTTGTTATAA 57.478 29.630 0.00 0.00 39.87 0.98
3476 4019 9.693739 ATGTTGGGAATTACATGACTTGTTATA 57.306 29.630 0.00 0.00 39.87 0.98
3477 4020 8.593945 ATGTTGGGAATTACATGACTTGTTAT 57.406 30.769 0.00 0.00 39.87 1.89
3478 4021 8.303156 CAATGTTGGGAATTACATGACTTGTTA 58.697 33.333 0.00 0.00 39.87 2.41
3479 4022 6.916360 ATGTTGGGAATTACATGACTTGTT 57.084 33.333 0.00 0.00 39.87 2.83
3480 4023 6.267471 ACAATGTTGGGAATTACATGACTTGT 59.733 34.615 0.00 0.00 42.62 3.16
3481 4024 6.690530 ACAATGTTGGGAATTACATGACTTG 58.309 36.000 0.00 0.00 0.00 3.16
3482 4025 6.916360 ACAATGTTGGGAATTACATGACTT 57.084 33.333 0.00 0.00 0.00 3.01
3483 4026 6.916360 AACAATGTTGGGAATTACATGACT 57.084 33.333 0.00 0.00 0.00 3.41
3484 4027 7.571059 GCAAAACAATGTTGGGAATTACATGAC 60.571 37.037 0.00 0.00 0.00 3.06
3485 4028 6.426328 GCAAAACAATGTTGGGAATTACATGA 59.574 34.615 0.00 0.00 0.00 3.07
3486 4029 6.204301 TGCAAAACAATGTTGGGAATTACATG 59.796 34.615 0.00 0.00 0.00 3.21
3489 4032 5.049749 GGTGCAAAACAATGTTGGGAATTAC 60.050 40.000 0.00 0.00 0.00 1.89
3493 4036 2.237143 TGGTGCAAAACAATGTTGGGAA 59.763 40.909 0.00 0.00 0.00 3.97
3495 4038 2.211806 CTGGTGCAAAACAATGTTGGG 58.788 47.619 0.00 0.00 0.00 4.12
3504 4047 2.034558 TCTTGCTAAGCTGGTGCAAAAC 59.965 45.455 17.75 0.00 44.49 2.43
3512 4055 4.706962 ACCCTTAAAATCTTGCTAAGCTGG 59.293 41.667 0.00 0.00 0.00 4.85
3527 4070 4.103469 TGCTCTGAACCTGTAACCCTTAAA 59.897 41.667 0.00 0.00 0.00 1.52
3529 4072 3.244582 TGCTCTGAACCTGTAACCCTTA 58.755 45.455 0.00 0.00 0.00 2.69
3533 4076 2.226674 GCTTTGCTCTGAACCTGTAACC 59.773 50.000 0.00 0.00 0.00 2.85
3534 4077 3.142174 AGCTTTGCTCTGAACCTGTAAC 58.858 45.455 0.00 0.00 30.62 2.50
3535 4078 3.492102 AGCTTTGCTCTGAACCTGTAA 57.508 42.857 0.00 0.00 30.62 2.41
3547 4090 2.158549 ACTCTTCTTTGGGAGCTTTGCT 60.159 45.455 0.00 0.00 43.88 3.91
3548 4091 2.030451 CACTCTTCTTTGGGAGCTTTGC 60.030 50.000 0.00 0.00 33.29 3.68
3549 4092 2.555757 CCACTCTTCTTTGGGAGCTTTG 59.444 50.000 0.00 0.00 33.29 2.77
3550 4093 2.443255 TCCACTCTTCTTTGGGAGCTTT 59.557 45.455 0.00 0.00 33.25 3.51
3551 4094 2.057922 TCCACTCTTCTTTGGGAGCTT 58.942 47.619 0.00 0.00 33.25 3.74
3552 4095 1.734655 TCCACTCTTCTTTGGGAGCT 58.265 50.000 0.00 0.00 33.25 4.09
3613 4157 5.017490 TGTAACCCTTGAAACCTTGTGAAA 58.983 37.500 0.00 0.00 0.00 2.69
3616 4160 3.317993 CCTGTAACCCTTGAAACCTTGTG 59.682 47.826 0.00 0.00 0.00 3.33
3617 4161 3.053170 ACCTGTAACCCTTGAAACCTTGT 60.053 43.478 0.00 0.00 0.00 3.16
3632 4176 0.321298 GCTTCGCCCTGAACCTGTAA 60.321 55.000 0.00 0.00 31.87 2.41
3671 4215 1.814793 TGCGCATTAGCTTTGGTACA 58.185 45.000 5.66 0.00 39.10 2.90
3680 4226 2.598439 CGAGTGAAGAATGCGCATTAGC 60.598 50.000 33.98 24.44 37.71 3.09
3720 4266 1.625818 ACTAGGGAAACTGGAGTGCAG 59.374 52.381 10.51 10.51 0.00 4.41
3742 4288 2.256117 AGGGCTGCCGATGTATTAAC 57.744 50.000 13.40 0.00 0.00 2.01
3752 4298 0.451783 GTGTATTCAAAGGGCTGCCG 59.548 55.000 13.40 0.00 0.00 5.69
3763 4309 3.523157 AGGGGATCATGTGTGTGTATTCA 59.477 43.478 0.00 0.00 0.00 2.57
3769 4315 0.914644 AGGAGGGGATCATGTGTGTG 59.085 55.000 0.00 0.00 0.00 3.82
3793 4339 9.132923 ACATCAAATTTCTAGATGCTGAATCAT 57.867 29.630 13.95 0.00 42.12 2.45
3794 4340 8.515695 ACATCAAATTTCTAGATGCTGAATCA 57.484 30.769 13.95 0.00 42.12 2.57
3812 4358 8.539544 TCTCTAACTTCATACCATGACATCAAA 58.460 33.333 0.00 0.00 39.39 2.69
3819 4365 8.135529 CGTACAATCTCTAACTTCATACCATGA 58.864 37.037 0.00 0.00 37.55 3.07
3820 4366 7.096023 GCGTACAATCTCTAACTTCATACCATG 60.096 40.741 0.00 0.00 0.00 3.66
3831 4377 5.810587 TCTTTGATGGCGTACAATCTCTAAC 59.189 40.000 0.00 0.00 0.00 2.34
3837 4383 5.296813 ACTTTCTTTGATGGCGTACAATC 57.703 39.130 0.00 0.00 0.00 2.67
3844 4390 5.344128 CAGAATTGAACTTTCTTTGATGGCG 59.656 40.000 0.00 0.00 31.11 5.69
3875 4421 4.422073 TCTTCACAGGTTTGTCTGATGT 57.578 40.909 0.00 0.00 38.11 3.06
3881 4427 5.516339 CACATTGTTTCTTCACAGGTTTGTC 59.484 40.000 0.00 0.00 34.62 3.18
3901 4447 1.547372 GGAAAATGCCAGACTGCACAT 59.453 47.619 0.00 0.05 45.48 3.21
3903 4449 1.068055 CAGGAAAATGCCAGACTGCAC 60.068 52.381 0.00 0.00 45.48 4.57
3919 4465 5.720041 AGGCAGTAGTAATCTGTAAACAGGA 59.280 40.000 10.11 0.00 43.91 3.86
3968 4514 4.025858 AGCCGTGTCAGCATGCCT 62.026 61.111 15.66 0.00 34.76 4.75
4016 4562 5.621228 CAGATGCAACGACAGAAAGTTTAAC 59.379 40.000 0.00 0.00 0.00 2.01
4030 4576 6.588348 TTGACATAGTTATCAGATGCAACG 57.412 37.500 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.