Multiple sequence alignment - TraesCS6B01G112200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G112200 chr6B 100.000 2612 0 0 1 2612 93986636 93989247 0.000000e+00 4824.0
1 TraesCS6B01G112200 chr6A 93.657 1939 106 9 143 2075 58018512 58020439 0.000000e+00 2883.0
2 TraesCS6B01G112200 chr6A 82.727 330 33 13 2071 2387 58020796 58021114 3.310000e-69 272.0
3 TraesCS6B01G112200 chr6A 94.643 112 6 0 56 167 58015137 58015248 9.610000e-40 174.0
4 TraesCS6B01G112200 chr6A 100.000 49 0 0 1 49 58015104 58015152 9.950000e-15 91.6
5 TraesCS6B01G112200 chrUn 91.341 1305 72 17 878 2167 18806625 18805347 0.000000e+00 1746.0
6 TraesCS6B01G112200 chrUn 93.750 352 18 1 395 742 18806968 18806617 2.300000e-145 525.0
7 TraesCS6B01G112200 chrUn 88.797 241 9 3 56 296 18807191 18806969 1.980000e-71 279.0
8 TraesCS6B01G112200 chrUn 84.577 201 19 5 2167 2358 18805188 18804991 3.430000e-44 189.0
9 TraesCS6B01G112200 chrUn 97.917 48 1 0 2 49 18807223 18807176 1.670000e-12 84.2
10 TraesCS6B01G112200 chrUn 100.000 32 0 0 2553 2584 182470010 182469979 2.810000e-05 60.2
11 TraesCS6B01G112200 chrUn 100.000 32 0 0 2553 2584 237094433 237094402 2.810000e-05 60.2
12 TraesCS6B01G112200 chr5D 93.023 43 3 0 2553 2595 118171393 118171435 2.170000e-06 63.9
13 TraesCS6B01G112200 chr5B 93.023 43 3 0 2553 2595 128682587 128682545 2.170000e-06 63.9
14 TraesCS6B01G112200 chr5B 93.023 43 3 0 2553 2595 128703151 128703109 2.170000e-06 63.9
15 TraesCS6B01G112200 chr1D 90.000 50 2 2 2382 2428 480619840 480619889 7.810000e-06 62.1
16 TraesCS6B01G112200 chr4D 100.000 32 0 0 2553 2584 123476421 123476452 2.810000e-05 60.2
17 TraesCS6B01G112200 chr4D 100.000 32 0 0 2553 2584 172095503 172095534 2.810000e-05 60.2
18 TraesCS6B01G112200 chr4D 100.000 32 0 0 2553 2584 241382209 241382178 2.810000e-05 60.2
19 TraesCS6B01G112200 chr4D 100.000 32 0 0 2553 2584 285054029 285054060 2.810000e-05 60.2
20 TraesCS6B01G112200 chr7D 88.000 50 3 2 2382 2428 30177667 30177716 3.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G112200 chr6B 93986636 93989247 2611 False 4824.00 4824 100.00000 1 2612 1 chr6B.!!$F1 2611
1 TraesCS6B01G112200 chr6A 58015104 58021114 6010 False 855.15 2883 92.75675 1 2387 4 chr6A.!!$F1 2386
2 TraesCS6B01G112200 chrUn 18804991 18807223 2232 True 564.64 1746 91.27640 2 2358 5 chrUn.!!$R3 2356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.036952 TCTGTGTGAGGCTTAGCTGC 60.037 55.0 3.59 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 5123 0.108585 AGAAGAAGAGCGGCAAACCA 59.891 50.0 1.45 0.0 34.57 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.354203 GGGAGTTCTGTGTGAGGCTTAG 60.354 54.545 0.00 0.00 0.00 2.18
41 42 2.342179 GAGTTCTGTGTGAGGCTTAGC 58.658 52.381 0.00 0.00 0.00 3.09
42 43 1.974236 AGTTCTGTGTGAGGCTTAGCT 59.026 47.619 3.59 0.00 0.00 3.32
43 44 2.072298 GTTCTGTGTGAGGCTTAGCTG 58.928 52.381 3.59 0.00 0.00 4.24
44 45 0.036952 TCTGTGTGAGGCTTAGCTGC 60.037 55.000 3.59 0.00 0.00 5.25
45 46 0.321034 CTGTGTGAGGCTTAGCTGCA 60.321 55.000 3.59 0.00 34.04 4.41
46 47 0.108396 TGTGTGAGGCTTAGCTGCAA 59.892 50.000 3.59 0.00 34.04 4.08
47 48 1.271543 TGTGTGAGGCTTAGCTGCAAT 60.272 47.619 3.59 0.00 34.04 3.56
48 49 1.815003 GTGTGAGGCTTAGCTGCAATT 59.185 47.619 3.59 0.00 34.04 2.32
49 50 3.009723 GTGTGAGGCTTAGCTGCAATTA 58.990 45.455 3.59 0.00 34.04 1.40
50 51 3.629398 GTGTGAGGCTTAGCTGCAATTAT 59.371 43.478 3.59 0.00 34.04 1.28
51 52 3.628942 TGTGAGGCTTAGCTGCAATTATG 59.371 43.478 3.59 0.00 34.04 1.90
52 53 3.879295 GTGAGGCTTAGCTGCAATTATGA 59.121 43.478 3.59 0.00 34.04 2.15
53 54 4.336433 GTGAGGCTTAGCTGCAATTATGAA 59.664 41.667 3.59 0.00 34.04 2.57
54 55 4.949238 TGAGGCTTAGCTGCAATTATGAAA 59.051 37.500 3.59 0.00 34.04 2.69
55 56 5.418524 TGAGGCTTAGCTGCAATTATGAAAA 59.581 36.000 3.59 0.00 34.04 2.29
56 57 5.899299 AGGCTTAGCTGCAATTATGAAAAG 58.101 37.500 3.59 0.00 34.04 2.27
57 58 5.045872 GGCTTAGCTGCAATTATGAAAAGG 58.954 41.667 3.59 0.00 34.04 3.11
58 59 4.505556 GCTTAGCTGCAATTATGAAAAGGC 59.494 41.667 1.02 0.00 0.00 4.35
59 60 5.680665 GCTTAGCTGCAATTATGAAAAGGCT 60.681 40.000 1.02 0.00 0.00 4.58
60 61 4.813750 AGCTGCAATTATGAAAAGGCTT 57.186 36.364 1.02 0.00 0.00 4.35
61 62 5.920193 AGCTGCAATTATGAAAAGGCTTA 57.080 34.783 0.00 0.00 0.00 3.09
91 92 7.254522 GCAATTGGTGGCAATATTGTTCTTATG 60.255 37.037 16.61 8.14 32.10 1.90
129 130 2.041620 ACTGTGGCATCAAGGTTATGGT 59.958 45.455 0.00 0.00 0.00 3.55
130 131 2.424601 CTGTGGCATCAAGGTTATGGTG 59.575 50.000 0.00 0.00 34.46 4.17
171 3460 6.108015 CCTTTTTGTATGGTTGCATATTGCT 58.892 36.000 0.75 0.00 45.31 3.91
178 3467 8.457238 TGTATGGTTGCATATTGCTGTTTATA 57.543 30.769 0.75 0.00 45.31 0.98
216 3505 9.872757 TTTATTTAGAGCTAGTGTTTTTGTTCG 57.127 29.630 0.00 0.00 0.00 3.95
237 3526 0.107831 TAATCCTGCATACCACCGCC 59.892 55.000 0.00 0.00 0.00 6.13
285 3575 6.718522 TGGGTTGGTAAGAAAGTAAAAAGG 57.281 37.500 0.00 0.00 0.00 3.11
286 3576 5.069383 TGGGTTGGTAAGAAAGTAAAAAGGC 59.931 40.000 0.00 0.00 0.00 4.35
287 3577 5.217393 GGTTGGTAAGAAAGTAAAAAGGCG 58.783 41.667 0.00 0.00 0.00 5.52
288 3578 4.492791 TGGTAAGAAAGTAAAAAGGCGC 57.507 40.909 0.00 0.00 0.00 6.53
290 3580 4.338682 TGGTAAGAAAGTAAAAAGGCGCAA 59.661 37.500 10.83 0.00 0.00 4.85
291 3581 4.678287 GGTAAGAAAGTAAAAAGGCGCAAC 59.322 41.667 10.83 0.00 0.00 4.17
292 3582 4.649088 AAGAAAGTAAAAAGGCGCAACT 57.351 36.364 10.83 0.00 0.00 3.16
295 3585 4.215613 AGAAAGTAAAAAGGCGCAACTAGG 59.784 41.667 10.83 0.00 0.00 3.02
296 3586 1.810755 AGTAAAAAGGCGCAACTAGGC 59.189 47.619 10.83 0.00 0.00 3.93
297 3587 1.810755 GTAAAAAGGCGCAACTAGGCT 59.189 47.619 10.83 0.00 46.93 4.58
377 3671 8.200120 TGGTCAGAATTCACATAGTTGATCTAG 58.800 37.037 8.44 0.00 31.67 2.43
419 3713 8.288689 ACAAAGTCAACAGTAAATAGTTTGGT 57.711 30.769 0.00 0.00 35.67 3.67
446 3740 5.075858 TCATTCGACGTATTGGTTTACCT 57.924 39.130 0.00 0.00 36.82 3.08
492 3790 8.934697 TCTTATGTTATAACCCAGAGTATTGCT 58.065 33.333 13.01 0.00 0.00 3.91
495 3793 6.717289 TGTTATAACCCAGAGTATTGCTTGT 58.283 36.000 13.01 0.00 0.00 3.16
543 3841 8.507249 GTCTGTATTTATGTTTTCACTCTTGCT 58.493 33.333 0.00 0.00 0.00 3.91
593 3891 8.967664 AAGCAAATAACATGCATTTGGATATT 57.032 26.923 24.08 2.98 46.22 1.28
612 3910 1.064003 TGGTGTAGCACTCCCACATT 58.936 50.000 0.00 0.00 34.40 2.71
703 4001 2.033801 GGCATGGTGCTGTGATTATCAC 59.966 50.000 17.57 17.57 44.28 3.06
785 4083 9.277783 GATATAGTATGAATTTGAGGCTGTTGT 57.722 33.333 0.00 0.00 0.00 3.32
811 4109 2.024414 ACAAGAGAAACTGTGTTGGCC 58.976 47.619 0.00 0.00 0.00 5.36
815 4113 3.365472 AGAGAAACTGTGTTGGCCTTTT 58.635 40.909 3.32 0.00 0.00 2.27
826 4124 8.374743 ACTGTGTTGGCCTTTTTGAATAAATAT 58.625 29.630 3.32 0.00 0.00 1.28
834 4132 8.882736 GGCCTTTTTGAATAAATATTGACTTGG 58.117 33.333 0.00 0.00 0.00 3.61
835 4133 8.390354 GCCTTTTTGAATAAATATTGACTTGGC 58.610 33.333 0.00 0.00 0.00 4.52
836 4134 8.882736 CCTTTTTGAATAAATATTGACTTGGCC 58.117 33.333 0.00 0.00 0.00 5.36
844 4142 5.675684 AATATTGACTTGGCCGGATTTTT 57.324 34.783 5.05 0.00 0.00 1.94
875 4173 1.468054 GCGGCACTTAAGGCAGAATTG 60.468 52.381 16.14 2.39 0.00 2.32
884 4182 2.493547 GGCAGAATTGGTACCTGGC 58.506 57.895 14.36 11.10 44.20 4.85
959 4257 5.871524 CACGCAGAAGCATATAGGTGATAAT 59.128 40.000 0.00 0.00 42.27 1.28
1108 4406 4.911754 GCAATGTGCGTTATTATGTTCG 57.088 40.909 0.00 0.00 31.71 3.95
1109 4407 4.339429 GCAATGTGCGTTATTATGTTCGT 58.661 39.130 0.00 0.00 31.71 3.85
1225 4523 6.685527 TGGAATGCGCAAATAACTGTAATA 57.314 33.333 17.11 0.00 0.00 0.98
1320 4618 2.486966 GCATTCTGCTTCACCGCC 59.513 61.111 0.00 0.00 40.96 6.13
1326 4624 2.747460 TGCTTCACCGCCATGCTC 60.747 61.111 0.00 0.00 0.00 4.26
1394 4692 0.530650 CTGCTCATAACCATCGGCGT 60.531 55.000 6.85 0.00 0.00 5.68
1444 4742 0.631753 CCTGTCCTCTCCTACCCTCA 59.368 60.000 0.00 0.00 0.00 3.86
1445 4743 1.686741 CCTGTCCTCTCCTACCCTCAC 60.687 61.905 0.00 0.00 0.00 3.51
1457 4755 2.279069 CCCTCACTCTCCACACGCT 61.279 63.158 0.00 0.00 0.00 5.07
1530 4828 2.035940 AGGTTCCTCGCGGAGACT 59.964 61.111 6.13 0.00 41.25 3.24
1608 4906 3.249559 CCACAGAGAAAGACAAGAGCAAC 59.750 47.826 0.00 0.00 0.00 4.17
1664 4968 8.975663 ACATTATGATGATGATGAAACAGAGT 57.024 30.769 4.20 0.00 36.73 3.24
1666 4970 8.837389 CATTATGATGATGATGAAACAGAGTGT 58.163 33.333 0.00 0.00 35.16 3.55
1698 5002 1.630148 GTGACGACTCCACACATAGC 58.370 55.000 0.00 0.00 34.81 2.97
1719 5023 9.486497 CATAGCATACACAAAGTTCAGATAGAT 57.514 33.333 0.00 0.00 0.00 1.98
1814 5123 1.668151 GCCGCTTCGTCAGTCCTTT 60.668 57.895 0.00 0.00 0.00 3.11
1840 5149 1.729517 GCCGCTCTTCTTCTTCTTGAC 59.270 52.381 0.00 0.00 0.00 3.18
1924 5233 1.523934 GCTGATGCTGTTGTTTGTTGC 59.476 47.619 0.00 0.00 36.03 4.17
1929 5238 1.909483 CTGTTGTTTGTTGCGTGCG 59.091 52.632 0.00 0.00 0.00 5.34
1930 5239 0.796491 CTGTTGTTTGTTGCGTGCGT 60.796 50.000 0.00 0.00 0.00 5.24
1931 5240 0.387367 TGTTGTTTGTTGCGTGCGTT 60.387 45.000 0.00 0.00 0.00 4.84
1932 5241 0.023103 GTTGTTTGTTGCGTGCGTTG 59.977 50.000 0.00 0.00 0.00 4.10
1933 5242 0.109735 TTGTTTGTTGCGTGCGTTGA 60.110 45.000 0.00 0.00 0.00 3.18
2009 5319 0.971386 ATTCCTTGCTTGGCTGGTTG 59.029 50.000 0.00 0.00 0.00 3.77
2047 5357 3.057946 GTGGAGATTGTGGTGCTTTCTTC 60.058 47.826 0.00 0.00 0.00 2.87
2081 5752 5.636965 TGGTTTGTGCGATTAATTTCATTGG 59.363 36.000 0.00 0.00 0.00 3.16
2138 5809 2.247437 GGCGATCGTTCCATCTGCC 61.247 63.158 17.81 1.58 36.22 4.85
2140 5811 1.218230 GCGATCGTTCCATCTGCCTC 61.218 60.000 17.81 0.00 0.00 4.70
2145 5817 0.249073 CGTTCCATCTGCCTCTACCG 60.249 60.000 0.00 0.00 0.00 4.02
2150 5822 2.628178 TCCATCTGCCTCTACCGTAATG 59.372 50.000 0.00 0.00 0.00 1.90
2155 5827 3.825014 TCTGCCTCTACCGTAATGTATCC 59.175 47.826 0.00 0.00 0.00 2.59
2167 6001 5.234329 CCGTAATGTATCCACTGCAAAGTAG 59.766 44.000 0.00 0.00 0.00 2.57
2168 6002 5.810587 CGTAATGTATCCACTGCAAAGTAGT 59.189 40.000 0.00 0.00 0.00 2.73
2170 6004 7.652105 CGTAATGTATCCACTGCAAAGTAGTAT 59.348 37.037 0.00 0.00 0.00 2.12
2171 6005 9.326413 GTAATGTATCCACTGCAAAGTAGTATT 57.674 33.333 0.00 0.00 0.00 1.89
2173 6007 9.899661 AATGTATCCACTGCAAAGTAGTATTAA 57.100 29.630 0.00 0.00 0.00 1.40
2174 6008 9.899661 ATGTATCCACTGCAAAGTAGTATTAAA 57.100 29.630 0.00 0.00 0.00 1.52
2175 6009 9.727859 TGTATCCACTGCAAAGTAGTATTAAAA 57.272 29.630 0.00 0.00 0.00 1.52
2176 6010 9.983804 GTATCCACTGCAAAGTAGTATTAAAAC 57.016 33.333 0.00 0.00 0.00 2.43
2183 6017 8.410673 TGCAAAGTAGTATTAAAACCCATTCA 57.589 30.769 0.00 0.00 0.00 2.57
2191 6025 5.760484 ATTAAAACCCATTCACAAGCCAT 57.240 34.783 0.00 0.00 0.00 4.40
2192 6026 5.559148 TTAAAACCCATTCACAAGCCATT 57.441 34.783 0.00 0.00 0.00 3.16
2204 6038 3.820467 CACAAGCCATTACAAGTCTGGAA 59.180 43.478 6.05 0.00 31.38 3.53
2208 6042 6.891908 ACAAGCCATTACAAGTCTGGAATTAT 59.108 34.615 6.05 0.00 33.46 1.28
2215 6049 7.733773 TTACAAGTCTGGAATTATCCTCTGA 57.266 36.000 0.00 0.00 46.70 3.27
2217 6051 6.648192 ACAAGTCTGGAATTATCCTCTGAAG 58.352 40.000 0.00 0.00 46.70 3.02
2221 6055 7.922382 AGTCTGGAATTATCCTCTGAAGAAAA 58.078 34.615 0.00 0.00 46.70 2.29
2229 6063 3.327439 TCCTCTGAAGAAAAGAAGGGGT 58.673 45.455 0.00 0.00 31.73 4.95
2247 6083 3.146847 GGGTAAACAAGTCTGGAGTTGG 58.853 50.000 18.57 5.15 44.02 3.77
2295 6140 0.955428 TTGCTTGCCTCGCTACCAAG 60.955 55.000 0.00 0.00 39.08 3.61
2332 6177 4.543590 TTGGTTGCCTTTTTGACAAAGA 57.456 36.364 0.10 0.00 0.00 2.52
2366 6212 8.907222 ATTTGTTTAAAATGAAGCATCAAGGT 57.093 26.923 0.00 0.00 39.49 3.50
2367 6213 7.712264 TTGTTTAAAATGAAGCATCAAGGTG 57.288 32.000 0.00 0.00 39.49 4.00
2368 6214 6.222389 TGTTTAAAATGAAGCATCAAGGTGG 58.778 36.000 0.00 0.00 39.49 4.61
2369 6215 6.183360 TGTTTAAAATGAAGCATCAAGGTGGT 60.183 34.615 0.00 0.00 39.49 4.16
2370 6216 7.014711 TGTTTAAAATGAAGCATCAAGGTGGTA 59.985 33.333 0.00 0.00 39.49 3.25
2371 6217 5.391312 AAAATGAAGCATCAAGGTGGTAC 57.609 39.130 0.00 0.00 39.49 3.34
2372 6218 2.093306 TGAAGCATCAAGGTGGTACG 57.907 50.000 0.00 0.00 30.99 3.67
2373 6219 1.621317 TGAAGCATCAAGGTGGTACGA 59.379 47.619 0.00 0.00 30.99 3.43
2374 6220 2.037902 TGAAGCATCAAGGTGGTACGAA 59.962 45.455 0.00 0.00 30.99 3.85
2375 6221 3.270877 GAAGCATCAAGGTGGTACGAAT 58.729 45.455 0.00 0.00 0.00 3.34
2376 6222 4.081365 TGAAGCATCAAGGTGGTACGAATA 60.081 41.667 0.00 0.00 30.99 1.75
2377 6223 3.793559 AGCATCAAGGTGGTACGAATAC 58.206 45.455 0.00 0.00 0.00 1.89
2378 6224 3.196901 AGCATCAAGGTGGTACGAATACA 59.803 43.478 0.00 0.00 32.40 2.29
2379 6225 3.936453 GCATCAAGGTGGTACGAATACAA 59.064 43.478 0.00 0.00 32.40 2.41
2380 6226 4.393680 GCATCAAGGTGGTACGAATACAAA 59.606 41.667 0.00 0.00 32.40 2.83
2381 6227 5.447279 GCATCAAGGTGGTACGAATACAAAG 60.447 44.000 0.00 0.00 32.40 2.77
2382 6228 5.471556 TCAAGGTGGTACGAATACAAAGA 57.528 39.130 0.00 0.00 32.40 2.52
2383 6229 6.045072 TCAAGGTGGTACGAATACAAAGAT 57.955 37.500 0.00 0.00 32.40 2.40
2384 6230 5.872617 TCAAGGTGGTACGAATACAAAGATG 59.127 40.000 0.00 0.00 32.40 2.90
2385 6231 4.189231 AGGTGGTACGAATACAAAGATGC 58.811 43.478 0.00 0.00 32.40 3.91
2386 6232 3.936453 GGTGGTACGAATACAAAGATGCA 59.064 43.478 0.00 0.00 32.40 3.96
2387 6233 4.201783 GGTGGTACGAATACAAAGATGCAC 60.202 45.833 0.00 0.00 32.40 4.57
2388 6234 4.390603 GTGGTACGAATACAAAGATGCACA 59.609 41.667 0.00 0.00 32.40 4.57
2389 6235 5.064707 GTGGTACGAATACAAAGATGCACAT 59.935 40.000 0.00 0.00 32.40 3.21
2390 6236 6.256975 GTGGTACGAATACAAAGATGCACATA 59.743 38.462 0.00 0.00 32.40 2.29
2391 6237 6.478673 TGGTACGAATACAAAGATGCACATAG 59.521 38.462 0.00 0.00 32.40 2.23
2392 6238 5.409643 ACGAATACAAAGATGCACATAGC 57.590 39.130 0.00 0.00 45.96 2.97
2393 6239 4.273480 ACGAATACAAAGATGCACATAGCC 59.727 41.667 0.00 0.00 44.83 3.93
2394 6240 4.273235 CGAATACAAAGATGCACATAGCCA 59.727 41.667 0.00 0.00 44.83 4.75
2395 6241 5.220835 CGAATACAAAGATGCACATAGCCAA 60.221 40.000 0.00 0.00 44.83 4.52
2396 6242 3.855689 ACAAAGATGCACATAGCCAAC 57.144 42.857 0.00 0.00 44.83 3.77
2397 6243 3.156293 ACAAAGATGCACATAGCCAACA 58.844 40.909 0.00 0.00 44.83 3.33
2398 6244 3.057315 ACAAAGATGCACATAGCCAACAC 60.057 43.478 0.00 0.00 44.83 3.32
2399 6245 1.755179 AGATGCACATAGCCAACACC 58.245 50.000 0.00 0.00 44.83 4.16
2400 6246 1.004628 AGATGCACATAGCCAACACCA 59.995 47.619 0.00 0.00 44.83 4.17
2401 6247 1.818060 GATGCACATAGCCAACACCAA 59.182 47.619 0.00 0.00 44.83 3.67
2402 6248 1.921982 TGCACATAGCCAACACCAAT 58.078 45.000 0.00 0.00 44.83 3.16
2403 6249 3.078891 TGCACATAGCCAACACCAATA 57.921 42.857 0.00 0.00 44.83 1.90
2404 6250 2.752354 TGCACATAGCCAACACCAATAC 59.248 45.455 0.00 0.00 44.83 1.89
2405 6251 2.752354 GCACATAGCCAACACCAATACA 59.248 45.455 0.00 0.00 37.23 2.29
2406 6252 3.427503 GCACATAGCCAACACCAATACAC 60.428 47.826 0.00 0.00 37.23 2.90
2407 6253 3.755905 CACATAGCCAACACCAATACACA 59.244 43.478 0.00 0.00 0.00 3.72
2408 6254 3.756434 ACATAGCCAACACCAATACACAC 59.244 43.478 0.00 0.00 0.00 3.82
2409 6255 2.356665 AGCCAACACCAATACACACA 57.643 45.000 0.00 0.00 0.00 3.72
2410 6256 2.875296 AGCCAACACCAATACACACAT 58.125 42.857 0.00 0.00 0.00 3.21
2411 6257 4.027674 AGCCAACACCAATACACACATA 57.972 40.909 0.00 0.00 0.00 2.29
2412 6258 3.756434 AGCCAACACCAATACACACATAC 59.244 43.478 0.00 0.00 0.00 2.39
2413 6259 3.504134 GCCAACACCAATACACACATACA 59.496 43.478 0.00 0.00 0.00 2.29
2414 6260 4.022762 GCCAACACCAATACACACATACAA 60.023 41.667 0.00 0.00 0.00 2.41
2415 6261 5.508153 GCCAACACCAATACACACATACAAA 60.508 40.000 0.00 0.00 0.00 2.83
2416 6262 6.686630 CCAACACCAATACACACATACAAAT 58.313 36.000 0.00 0.00 0.00 2.32
2417 6263 6.806249 CCAACACCAATACACACATACAAATC 59.194 38.462 0.00 0.00 0.00 2.17
2418 6264 7.366513 CAACACCAATACACACATACAAATCA 58.633 34.615 0.00 0.00 0.00 2.57
2419 6265 6.908825 ACACCAATACACACATACAAATCAC 58.091 36.000 0.00 0.00 0.00 3.06
2420 6266 6.488344 ACACCAATACACACATACAAATCACA 59.512 34.615 0.00 0.00 0.00 3.58
2421 6267 6.801377 CACCAATACACACATACAAATCACAC 59.199 38.462 0.00 0.00 0.00 3.82
2422 6268 6.072175 ACCAATACACACATACAAATCACACC 60.072 38.462 0.00 0.00 0.00 4.16
2423 6269 6.072230 CCAATACACACATACAAATCACACCA 60.072 38.462 0.00 0.00 0.00 4.17
2424 6270 6.741992 ATACACACATACAAATCACACCAG 57.258 37.500 0.00 0.00 0.00 4.00
2425 6271 3.253188 ACACACATACAAATCACACCAGC 59.747 43.478 0.00 0.00 0.00 4.85
2426 6272 3.252944 CACACATACAAATCACACCAGCA 59.747 43.478 0.00 0.00 0.00 4.41
2427 6273 3.888323 ACACATACAAATCACACCAGCAA 59.112 39.130 0.00 0.00 0.00 3.91
2428 6274 4.229096 CACATACAAATCACACCAGCAAC 58.771 43.478 0.00 0.00 0.00 4.17
2429 6275 4.022935 CACATACAAATCACACCAGCAACT 60.023 41.667 0.00 0.00 0.00 3.16
2430 6276 5.181056 CACATACAAATCACACCAGCAACTA 59.819 40.000 0.00 0.00 0.00 2.24
2431 6277 5.767665 ACATACAAATCACACCAGCAACTAA 59.232 36.000 0.00 0.00 0.00 2.24
2432 6278 6.264292 ACATACAAATCACACCAGCAACTAAA 59.736 34.615 0.00 0.00 0.00 1.85
2433 6279 5.590530 ACAAATCACACCAGCAACTAAAA 57.409 34.783 0.00 0.00 0.00 1.52
2434 6280 5.348164 ACAAATCACACCAGCAACTAAAAC 58.652 37.500 0.00 0.00 0.00 2.43
2435 6281 5.105554 ACAAATCACACCAGCAACTAAAACA 60.106 36.000 0.00 0.00 0.00 2.83
2436 6282 5.789643 AATCACACCAGCAACTAAAACAT 57.210 34.783 0.00 0.00 0.00 2.71
2437 6283 5.789643 ATCACACCAGCAACTAAAACATT 57.210 34.783 0.00 0.00 0.00 2.71
2438 6284 5.590530 TCACACCAGCAACTAAAACATTT 57.409 34.783 0.00 0.00 0.00 2.32
2439 6285 6.701145 TCACACCAGCAACTAAAACATTTA 57.299 33.333 0.00 0.00 0.00 1.40
2440 6286 7.101652 TCACACCAGCAACTAAAACATTTAA 57.898 32.000 0.00 0.00 0.00 1.52
2441 6287 7.199766 TCACACCAGCAACTAAAACATTTAAG 58.800 34.615 0.00 0.00 0.00 1.85
2442 6288 6.978080 CACACCAGCAACTAAAACATTTAAGT 59.022 34.615 0.00 0.00 0.00 2.24
2443 6289 7.491048 CACACCAGCAACTAAAACATTTAAGTT 59.509 33.333 0.00 0.00 32.52 2.66
2444 6290 8.038351 ACACCAGCAACTAAAACATTTAAGTTT 58.962 29.630 0.00 0.00 43.13 2.66
2445 6291 8.327429 CACCAGCAACTAAAACATTTAAGTTTG 58.673 33.333 0.00 0.00 40.60 2.93
2446 6292 8.254508 ACCAGCAACTAAAACATTTAAGTTTGA 58.745 29.630 0.00 0.00 40.60 2.69
2447 6293 9.092876 CCAGCAACTAAAACATTTAAGTTTGAA 57.907 29.630 0.00 0.00 40.60 2.69
2449 6295 9.869757 AGCAACTAAAACATTTAAGTTTGAAGT 57.130 25.926 0.00 0.00 40.60 3.01
2450 6296 9.900264 GCAACTAAAACATTTAAGTTTGAAGTG 57.100 29.630 0.00 0.00 40.60 3.16
2497 6343 9.543783 AAAATTGACCGAGGAACTATCTAATAC 57.456 33.333 0.00 0.00 41.55 1.89
2498 6344 8.480133 AATTGACCGAGGAACTATCTAATACT 57.520 34.615 0.00 0.00 41.55 2.12
2499 6345 9.584008 AATTGACCGAGGAACTATCTAATACTA 57.416 33.333 0.00 0.00 41.55 1.82
2500 6346 9.756571 ATTGACCGAGGAACTATCTAATACTAT 57.243 33.333 0.00 0.00 41.55 2.12
2501 6347 9.584008 TTGACCGAGGAACTATCTAATACTATT 57.416 33.333 0.00 0.00 41.55 1.73
2515 6361 8.985315 TCTAATACTATTACTTTCGAGGACCA 57.015 34.615 0.00 0.00 0.00 4.02
2516 6362 9.064706 TCTAATACTATTACTTTCGAGGACCAG 57.935 37.037 0.00 0.00 0.00 4.00
2517 6363 7.893124 AATACTATTACTTTCGAGGACCAGA 57.107 36.000 0.00 0.00 0.00 3.86
2518 6364 7.893124 ATACTATTACTTTCGAGGACCAGAA 57.107 36.000 0.00 0.00 0.00 3.02
2519 6365 6.793505 ACTATTACTTTCGAGGACCAGAAT 57.206 37.500 0.00 0.00 0.00 2.40
2520 6366 6.574350 ACTATTACTTTCGAGGACCAGAATG 58.426 40.000 11.50 11.50 0.00 2.67
2521 6367 5.677319 ATTACTTTCGAGGACCAGAATGA 57.323 39.130 16.89 0.49 39.69 2.57
2522 6368 5.677319 TTACTTTCGAGGACCAGAATGAT 57.323 39.130 16.89 8.20 39.69 2.45
2523 6369 3.866651 ACTTTCGAGGACCAGAATGATG 58.133 45.455 16.89 6.73 39.69 3.07
2524 6370 2.315925 TTCGAGGACCAGAATGATGC 57.684 50.000 0.00 0.00 39.69 3.91
2525 6371 1.489481 TCGAGGACCAGAATGATGCT 58.511 50.000 0.00 0.00 39.69 3.79
2526 6372 1.410517 TCGAGGACCAGAATGATGCTC 59.589 52.381 0.00 0.00 39.69 4.26
2527 6373 1.411977 CGAGGACCAGAATGATGCTCT 59.588 52.381 0.00 0.00 39.69 4.09
2528 6374 2.625314 CGAGGACCAGAATGATGCTCTA 59.375 50.000 0.00 0.00 39.69 2.43
2529 6375 3.257873 CGAGGACCAGAATGATGCTCTAT 59.742 47.826 0.00 0.00 39.69 1.98
2530 6376 4.460731 CGAGGACCAGAATGATGCTCTATA 59.539 45.833 0.00 0.00 39.69 1.31
2531 6377 5.126869 CGAGGACCAGAATGATGCTCTATAT 59.873 44.000 0.00 0.00 39.69 0.86
2532 6378 6.543430 AGGACCAGAATGATGCTCTATATC 57.457 41.667 0.00 0.00 39.69 1.63
2533 6379 6.262980 AGGACCAGAATGATGCTCTATATCT 58.737 40.000 0.00 0.00 39.69 1.98
2534 6380 6.730038 AGGACCAGAATGATGCTCTATATCTT 59.270 38.462 0.00 0.00 39.69 2.40
2535 6381 7.237263 AGGACCAGAATGATGCTCTATATCTTT 59.763 37.037 0.00 0.00 39.69 2.52
2536 6382 7.882271 GGACCAGAATGATGCTCTATATCTTTT 59.118 37.037 0.00 0.00 39.69 2.27
2537 6383 9.282569 GACCAGAATGATGCTCTATATCTTTTT 57.717 33.333 0.00 0.00 39.69 1.94
2538 6384 9.282569 ACCAGAATGATGCTCTATATCTTTTTC 57.717 33.333 0.00 0.00 39.69 2.29
2539 6385 8.728833 CCAGAATGATGCTCTATATCTTTTTCC 58.271 37.037 0.00 0.00 39.69 3.13
2540 6386 9.281371 CAGAATGATGCTCTATATCTTTTTCCA 57.719 33.333 0.00 0.00 39.69 3.53
2541 6387 9.857656 AGAATGATGCTCTATATCTTTTTCCAA 57.142 29.630 0.00 0.00 0.00 3.53
2544 6390 8.627208 TGATGCTCTATATCTTTTTCCAATCC 57.373 34.615 0.00 0.00 0.00 3.01
2545 6391 7.667219 TGATGCTCTATATCTTTTTCCAATCCC 59.333 37.037 0.00 0.00 0.00 3.85
2546 6392 5.997746 TGCTCTATATCTTTTTCCAATCCCG 59.002 40.000 0.00 0.00 0.00 5.14
2547 6393 5.412904 GCTCTATATCTTTTTCCAATCCCGG 59.587 44.000 0.00 0.00 0.00 5.73
2548 6394 5.313712 TCTATATCTTTTTCCAATCCCGGC 58.686 41.667 0.00 0.00 0.00 6.13
2549 6395 2.230130 ATCTTTTTCCAATCCCGGCA 57.770 45.000 0.00 0.00 0.00 5.69
2550 6396 2.002505 TCTTTTTCCAATCCCGGCAA 57.997 45.000 0.00 0.00 0.00 4.52
2551 6397 2.320781 TCTTTTTCCAATCCCGGCAAA 58.679 42.857 0.00 0.00 0.00 3.68
2552 6398 2.298729 TCTTTTTCCAATCCCGGCAAAG 59.701 45.455 0.00 0.00 31.80 2.77
2553 6399 0.972883 TTTTCCAATCCCGGCAAAGG 59.027 50.000 0.00 0.00 0.00 3.11
2554 6400 0.113385 TTTCCAATCCCGGCAAAGGA 59.887 50.000 0.00 0.00 37.93 3.36
2555 6401 0.113385 TTCCAATCCCGGCAAAGGAA 59.887 50.000 11.23 11.23 36.85 3.36
2556 6402 0.113385 TCCAATCCCGGCAAAGGAAA 59.887 50.000 0.00 0.00 36.85 3.13
2557 6403 0.532115 CCAATCCCGGCAAAGGAAAG 59.468 55.000 0.00 0.00 36.85 2.62
2558 6404 0.108662 CAATCCCGGCAAAGGAAAGC 60.109 55.000 0.00 0.00 36.85 3.51
2567 6413 2.784347 GCAAAGGAAAGCCAGTAGAGT 58.216 47.619 0.00 0.00 36.29 3.24
2568 6414 3.939066 GCAAAGGAAAGCCAGTAGAGTA 58.061 45.455 0.00 0.00 36.29 2.59
2569 6415 4.518249 GCAAAGGAAAGCCAGTAGAGTAT 58.482 43.478 0.00 0.00 36.29 2.12
2570 6416 4.333926 GCAAAGGAAAGCCAGTAGAGTATG 59.666 45.833 0.00 0.00 36.29 2.39
2571 6417 3.828875 AGGAAAGCCAGTAGAGTATGC 57.171 47.619 0.00 0.00 36.29 3.14
2572 6418 2.436173 AGGAAAGCCAGTAGAGTATGCC 59.564 50.000 0.00 0.00 36.29 4.40
2573 6419 2.436173 GGAAAGCCAGTAGAGTATGCCT 59.564 50.000 0.00 0.00 0.00 4.75
2574 6420 3.118223 GGAAAGCCAGTAGAGTATGCCTT 60.118 47.826 0.00 0.00 0.00 4.35
2575 6421 3.550437 AAGCCAGTAGAGTATGCCTTG 57.450 47.619 0.00 0.00 0.00 3.61
2576 6422 1.765314 AGCCAGTAGAGTATGCCTTGG 59.235 52.381 0.00 0.00 0.00 3.61
2577 6423 1.486726 GCCAGTAGAGTATGCCTTGGT 59.513 52.381 0.00 0.00 0.00 3.67
2578 6424 2.092914 GCCAGTAGAGTATGCCTTGGTT 60.093 50.000 0.00 0.00 0.00 3.67
2579 6425 3.622455 GCCAGTAGAGTATGCCTTGGTTT 60.622 47.826 0.00 0.00 0.00 3.27
2580 6426 4.383770 GCCAGTAGAGTATGCCTTGGTTTA 60.384 45.833 0.00 0.00 0.00 2.01
2581 6427 5.741011 CCAGTAGAGTATGCCTTGGTTTAA 58.259 41.667 0.00 0.00 0.00 1.52
2582 6428 5.817816 CCAGTAGAGTATGCCTTGGTTTAAG 59.182 44.000 0.00 0.00 36.11 1.85
2583 6429 6.351881 CCAGTAGAGTATGCCTTGGTTTAAGA 60.352 42.308 0.00 0.00 38.76 2.10
2584 6430 7.103641 CAGTAGAGTATGCCTTGGTTTAAGAA 58.896 38.462 0.00 0.00 38.76 2.52
2585 6431 7.606456 CAGTAGAGTATGCCTTGGTTTAAGAAA 59.394 37.037 0.00 0.00 38.76 2.52
2586 6432 8.329502 AGTAGAGTATGCCTTGGTTTAAGAAAT 58.670 33.333 0.00 0.00 38.76 2.17
2587 6433 7.396540 AGAGTATGCCTTGGTTTAAGAAATG 57.603 36.000 0.00 0.00 38.76 2.32
2588 6434 7.175104 AGAGTATGCCTTGGTTTAAGAAATGA 58.825 34.615 0.00 0.00 38.76 2.57
2589 6435 7.669722 AGAGTATGCCTTGGTTTAAGAAATGAA 59.330 33.333 0.00 0.00 38.76 2.57
2590 6436 7.830739 AGTATGCCTTGGTTTAAGAAATGAAG 58.169 34.615 0.00 0.00 38.76 3.02
2591 6437 4.881920 TGCCTTGGTTTAAGAAATGAAGC 58.118 39.130 0.00 0.00 38.76 3.86
2592 6438 4.343526 TGCCTTGGTTTAAGAAATGAAGCA 59.656 37.500 0.00 0.00 38.76 3.91
2593 6439 5.011943 TGCCTTGGTTTAAGAAATGAAGCAT 59.988 36.000 0.00 0.00 38.76 3.79
2594 6440 5.578336 GCCTTGGTTTAAGAAATGAAGCATC 59.422 40.000 0.00 0.00 38.76 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.505556 GCTAAGCCTTTTCATAATTGCAGC 59.494 41.667 0.00 0.00 0.00 5.25
41 42 5.747197 CAGCTAAGCCTTTTCATAATTGCAG 59.253 40.000 0.00 0.00 0.00 4.41
42 43 5.653507 CAGCTAAGCCTTTTCATAATTGCA 58.346 37.500 0.00 0.00 0.00 4.08
43 44 4.505556 GCAGCTAAGCCTTTTCATAATTGC 59.494 41.667 0.00 0.00 0.00 3.56
44 45 5.653507 TGCAGCTAAGCCTTTTCATAATTG 58.346 37.500 0.00 0.00 0.00 2.32
45 46 5.920193 TGCAGCTAAGCCTTTTCATAATT 57.080 34.783 0.00 0.00 0.00 1.40
46 47 5.920193 TTGCAGCTAAGCCTTTTCATAAT 57.080 34.783 0.00 0.00 0.00 1.28
47 48 5.920193 ATTGCAGCTAAGCCTTTTCATAA 57.080 34.783 0.00 0.00 0.00 1.90
48 49 5.394443 CCAATTGCAGCTAAGCCTTTTCATA 60.394 40.000 0.00 0.00 0.00 2.15
49 50 4.501071 CAATTGCAGCTAAGCCTTTTCAT 58.499 39.130 0.00 0.00 0.00 2.57
50 51 3.306225 CCAATTGCAGCTAAGCCTTTTCA 60.306 43.478 0.00 0.00 0.00 2.69
51 52 3.256558 CCAATTGCAGCTAAGCCTTTTC 58.743 45.455 0.00 0.00 0.00 2.29
52 53 2.634453 ACCAATTGCAGCTAAGCCTTTT 59.366 40.909 0.00 0.00 0.00 2.27
53 54 2.028748 CACCAATTGCAGCTAAGCCTTT 60.029 45.455 0.00 0.00 0.00 3.11
54 55 1.547372 CACCAATTGCAGCTAAGCCTT 59.453 47.619 0.00 0.00 0.00 4.35
55 56 1.180029 CACCAATTGCAGCTAAGCCT 58.820 50.000 0.00 0.00 0.00 4.58
56 57 0.174162 CCACCAATTGCAGCTAAGCC 59.826 55.000 0.00 0.00 0.00 4.35
57 58 0.459063 GCCACCAATTGCAGCTAAGC 60.459 55.000 0.00 0.00 0.00 3.09
58 59 0.889994 TGCCACCAATTGCAGCTAAG 59.110 50.000 0.00 0.00 32.77 2.18
59 60 1.336131 TTGCCACCAATTGCAGCTAA 58.664 45.000 0.00 0.00 38.95 3.09
60 61 1.559368 ATTGCCACCAATTGCAGCTA 58.441 45.000 0.00 0.00 38.49 3.32
61 62 1.559368 TATTGCCACCAATTGCAGCT 58.441 45.000 0.00 0.00 41.68 4.24
91 92 5.652518 CCACAGTTAAGAAGCTACTCTACC 58.347 45.833 0.00 0.00 0.00 3.18
129 130 0.038166 GGGGAAACTCATGCACCTCA 59.962 55.000 0.00 0.00 0.00 3.86
130 131 0.329596 AGGGGAAACTCATGCACCTC 59.670 55.000 0.00 0.00 0.00 3.85
178 3467 6.825610 AGCTCTAAATAAACAGCAGCTCTAT 58.174 36.000 0.00 0.00 34.08 1.98
197 3486 3.805207 ACCGAACAAAAACACTAGCTCT 58.195 40.909 0.00 0.00 0.00 4.09
216 3505 1.878953 CGGTGGTATGCAGGATTACC 58.121 55.000 7.21 7.21 38.68 2.85
285 3575 0.456221 TCTCACTAGCCTAGTTGCGC 59.544 55.000 0.46 0.00 36.76 6.09
286 3576 2.544694 CCATCTCACTAGCCTAGTTGCG 60.545 54.545 0.46 0.00 36.76 4.85
287 3577 2.695666 TCCATCTCACTAGCCTAGTTGC 59.304 50.000 0.46 0.00 36.76 4.17
288 3578 5.543507 AATCCATCTCACTAGCCTAGTTG 57.456 43.478 0.46 0.00 36.76 3.16
290 3580 5.959512 ACTAATCCATCTCACTAGCCTAGT 58.040 41.667 0.00 0.00 40.28 2.57
291 3581 7.668052 ACTTACTAATCCATCTCACTAGCCTAG 59.332 40.741 0.00 0.00 0.00 3.02
292 3582 7.527796 ACTTACTAATCCATCTCACTAGCCTA 58.472 38.462 0.00 0.00 0.00 3.93
295 3585 7.810759 GCTAACTTACTAATCCATCTCACTAGC 59.189 40.741 0.00 0.00 0.00 3.42
296 3586 9.073475 AGCTAACTTACTAATCCATCTCACTAG 57.927 37.037 0.00 0.00 0.00 2.57
297 3587 8.998277 AGCTAACTTACTAATCCATCTCACTA 57.002 34.615 0.00 0.00 0.00 2.74
377 3671 4.643334 ACTTTGTTACCAACCTCTCCAAAC 59.357 41.667 0.00 0.00 0.00 2.93
419 3713 7.436080 GGTAAACCAATACGTCGAATGAGAATA 59.564 37.037 0.00 0.00 35.64 1.75
422 3716 5.104374 GGTAAACCAATACGTCGAATGAGA 58.896 41.667 0.00 0.00 35.64 3.27
432 3726 4.240096 ACTTCGTCAGGTAAACCAATACG 58.760 43.478 12.15 12.15 38.30 3.06
446 3740 3.197766 AGATCCTGCCAATAACTTCGTCA 59.802 43.478 0.00 0.00 0.00 4.35
492 3790 8.432805 ACCCATTTGAACATAAAACCATAACAA 58.567 29.630 0.00 0.00 0.00 2.83
495 3793 8.310382 CAGACCCATTTGAACATAAAACCATAA 58.690 33.333 0.00 0.00 0.00 1.90
593 3891 1.064003 AATGTGGGAGTGCTACACCA 58.936 50.000 2.21 0.00 34.49 4.17
612 3910 6.071672 TGTCAAGTCATGTGAGTTTCCAAAAA 60.072 34.615 0.43 0.00 35.65 1.94
703 4001 6.105657 TCGATGTTACTGCACATAAACATG 57.894 37.500 13.12 0.00 41.37 3.21
783 4081 2.023673 CAGTTTCTCTTGTGGGCAACA 58.976 47.619 0.00 0.00 36.85 3.33
785 4083 2.023673 CACAGTTTCTCTTGTGGGCAA 58.976 47.619 0.00 0.00 0.00 4.52
811 4109 8.594687 CGGCCAAGTCAATATTTATTCAAAAAG 58.405 33.333 2.24 0.00 0.00 2.27
815 4113 5.888724 TCCGGCCAAGTCAATATTTATTCAA 59.111 36.000 2.24 0.00 0.00 2.69
826 4124 2.035632 ACAAAAATCCGGCCAAGTCAA 58.964 42.857 2.24 0.00 0.00 3.18
834 4132 1.727857 CGCACTACACAAAAATCCGGC 60.728 52.381 0.00 0.00 0.00 6.13
835 4133 1.135803 CCGCACTACACAAAAATCCGG 60.136 52.381 0.00 0.00 0.00 5.14
836 4134 1.727857 GCCGCACTACACAAAAATCCG 60.728 52.381 0.00 0.00 0.00 4.18
875 4173 0.965439 TTTGCAACATGCCAGGTACC 59.035 50.000 2.73 2.73 44.23 3.34
959 4257 4.321601 GGCACTGGCACAAATAACAATACA 60.322 41.667 0.00 0.00 43.71 2.29
1320 4618 4.775236 AGAAAAAGGCTAGGTAGAGCATG 58.225 43.478 0.00 0.00 44.76 4.06
1326 4624 3.619038 CGCTTGAGAAAAAGGCTAGGTAG 59.381 47.826 0.00 0.00 0.00 3.18
1394 4692 2.176045 TGAGGAGCACGAATAGAACCA 58.824 47.619 0.00 0.00 0.00 3.67
1444 4742 2.683867 GTGTAGATAGCGTGTGGAGAGT 59.316 50.000 0.00 0.00 0.00 3.24
1445 4743 2.946329 AGTGTAGATAGCGTGTGGAGAG 59.054 50.000 0.00 0.00 0.00 3.20
1457 4755 1.202256 CGCCGCAACAGAGTGTAGATA 60.202 52.381 0.00 0.00 0.00 1.98
1506 4804 4.090057 GCGAGGAACCTGCAACGC 62.090 66.667 8.43 8.43 39.33 4.84
1649 4947 3.076621 TGGCACACTCTGTTTCATCATC 58.923 45.455 0.00 0.00 0.00 2.92
1650 4948 3.144657 TGGCACACTCTGTTTCATCAT 57.855 42.857 0.00 0.00 0.00 2.45
1651 4949 2.636647 TGGCACACTCTGTTTCATCA 57.363 45.000 0.00 0.00 0.00 3.07
1680 4984 1.253100 TGCTATGTGTGGAGTCGTCA 58.747 50.000 0.00 0.00 0.00 4.35
1681 4985 2.586258 ATGCTATGTGTGGAGTCGTC 57.414 50.000 0.00 0.00 0.00 4.20
1698 5002 7.783090 AGCATCTATCTGAACTTTGTGTATG 57.217 36.000 0.00 0.00 0.00 2.39
1814 5123 0.108585 AGAAGAAGAGCGGCAAACCA 59.891 50.000 1.45 0.00 34.57 3.67
1840 5149 1.409227 CTGCTCGTGCTTCTGCTACG 61.409 60.000 11.19 0.00 41.45 3.51
1924 5233 1.011242 CACACCAACTCAACGCACG 60.011 57.895 0.00 0.00 0.00 5.34
1929 5238 1.742831 TCAGCAACACACCAACTCAAC 59.257 47.619 0.00 0.00 0.00 3.18
1930 5239 2.121291 TCAGCAACACACCAACTCAA 57.879 45.000 0.00 0.00 0.00 3.02
1931 5240 2.016318 CTTCAGCAACACACCAACTCA 58.984 47.619 0.00 0.00 0.00 3.41
1932 5241 1.334869 CCTTCAGCAACACACCAACTC 59.665 52.381 0.00 0.00 0.00 3.01
1933 5242 1.392589 CCTTCAGCAACACACCAACT 58.607 50.000 0.00 0.00 0.00 3.16
1970 5279 8.405418 AGGAATCAACACGCTAGTATATCTAA 57.595 34.615 0.00 0.00 0.00 2.10
2009 5319 1.274167 TCCACCGTCCTGTGATAACAC 59.726 52.381 0.00 0.00 46.09 3.32
2047 5357 2.015227 GCACAAACCACCCCACACAG 62.015 60.000 0.00 0.00 0.00 3.66
2081 5752 0.944386 TTCTTCTCGGCACAACAAGC 59.056 50.000 0.00 0.00 0.00 4.01
2121 5792 1.218230 GAGGCAGATGGAACGATCGC 61.218 60.000 16.60 0.00 0.00 4.58
2150 5822 9.983804 GTTTTAATACTACTTTGCAGTGGATAC 57.016 33.333 0.00 0.00 35.08 2.24
2155 5827 7.209471 TGGGTTTTAATACTACTTTGCAGTG 57.791 36.000 0.00 0.00 34.06 3.66
2167 6001 6.031751 TGGCTTGTGAATGGGTTTTAATAC 57.968 37.500 0.00 0.00 0.00 1.89
2168 6002 6.865834 ATGGCTTGTGAATGGGTTTTAATA 57.134 33.333 0.00 0.00 0.00 0.98
2170 6004 5.559148 AATGGCTTGTGAATGGGTTTTAA 57.441 34.783 0.00 0.00 0.00 1.52
2171 6005 5.540337 TGTAATGGCTTGTGAATGGGTTTTA 59.460 36.000 0.00 0.00 0.00 1.52
2172 6006 4.346418 TGTAATGGCTTGTGAATGGGTTTT 59.654 37.500 0.00 0.00 0.00 2.43
2173 6007 3.900601 TGTAATGGCTTGTGAATGGGTTT 59.099 39.130 0.00 0.00 0.00 3.27
2174 6008 3.505386 TGTAATGGCTTGTGAATGGGTT 58.495 40.909 0.00 0.00 0.00 4.11
2175 6009 3.168035 TGTAATGGCTTGTGAATGGGT 57.832 42.857 0.00 0.00 0.00 4.51
2176 6010 3.511146 ACTTGTAATGGCTTGTGAATGGG 59.489 43.478 0.00 0.00 0.00 4.00
2183 6017 3.788227 TCCAGACTTGTAATGGCTTGT 57.212 42.857 0.00 0.00 33.92 3.16
2191 6025 7.733773 TCAGAGGATAATTCCAGACTTGTAA 57.266 36.000 0.00 0.00 45.30 2.41
2192 6026 7.619698 TCTTCAGAGGATAATTCCAGACTTGTA 59.380 37.037 0.00 0.00 45.30 2.41
2204 6038 6.218522 ACCCCTTCTTTTCTTCAGAGGATAAT 59.781 38.462 0.00 0.00 0.00 1.28
2208 6042 3.327439 ACCCCTTCTTTTCTTCAGAGGA 58.673 45.455 0.00 0.00 0.00 3.71
2215 6049 6.321435 CAGACTTGTTTACCCCTTCTTTTCTT 59.679 38.462 0.00 0.00 0.00 2.52
2217 6051 5.009710 CCAGACTTGTTTACCCCTTCTTTTC 59.990 44.000 0.00 0.00 0.00 2.29
2221 6055 3.323775 TCCAGACTTGTTTACCCCTTCT 58.676 45.455 0.00 0.00 0.00 2.85
2229 6063 5.454187 CCACTACCAACTCCAGACTTGTTTA 60.454 44.000 0.00 0.00 0.00 2.01
2247 6083 5.945155 TGTTCACAACTTCAAAACCACTAC 58.055 37.500 0.00 0.00 0.00 2.73
2272 6117 0.723981 GTAGCGAGGCAAGCAAGAAG 59.276 55.000 6.95 0.00 37.01 2.85
2299 6144 3.903467 AGGCAACCAAAGGATATTCCTC 58.097 45.455 0.00 0.00 42.62 3.71
2301 6146 5.420725 AAAAGGCAACCAAAGGATATTCC 57.579 39.130 0.00 0.00 34.40 3.01
2344 6190 6.183360 ACCACCTTGATGCTTCATTTTAAACA 60.183 34.615 2.75 0.00 0.00 2.83
2346 6192 6.418057 ACCACCTTGATGCTTCATTTTAAA 57.582 33.333 2.75 0.00 0.00 1.52
2355 6201 2.851263 TTCGTACCACCTTGATGCTT 57.149 45.000 0.00 0.00 0.00 3.91
2361 6207 5.447279 GCATCTTTGTATTCGTACCACCTTG 60.447 44.000 0.00 0.00 0.00 3.61
2362 6208 4.634443 GCATCTTTGTATTCGTACCACCTT 59.366 41.667 0.00 0.00 0.00 3.50
2363 6209 4.189231 GCATCTTTGTATTCGTACCACCT 58.811 43.478 0.00 0.00 0.00 4.00
2364 6210 3.936453 TGCATCTTTGTATTCGTACCACC 59.064 43.478 0.00 0.00 0.00 4.61
2365 6211 4.390603 TGTGCATCTTTGTATTCGTACCAC 59.609 41.667 0.00 0.00 0.00 4.16
2366 6212 4.570930 TGTGCATCTTTGTATTCGTACCA 58.429 39.130 0.00 0.00 0.00 3.25
2367 6213 5.734855 ATGTGCATCTTTGTATTCGTACC 57.265 39.130 0.00 0.00 0.00 3.34
2368 6214 6.355638 GCTATGTGCATCTTTGTATTCGTAC 58.644 40.000 0.00 0.00 42.31 3.67
2369 6215 5.465390 GGCTATGTGCATCTTTGTATTCGTA 59.535 40.000 0.00 0.00 45.15 3.43
2370 6216 4.273480 GGCTATGTGCATCTTTGTATTCGT 59.727 41.667 0.00 0.00 45.15 3.85
2371 6217 4.273235 TGGCTATGTGCATCTTTGTATTCG 59.727 41.667 0.00 0.00 45.15 3.34
2372 6218 5.756195 TGGCTATGTGCATCTTTGTATTC 57.244 39.130 0.00 0.00 45.15 1.75
2373 6219 5.418524 TGTTGGCTATGTGCATCTTTGTATT 59.581 36.000 0.00 0.00 45.15 1.89
2374 6220 4.949238 TGTTGGCTATGTGCATCTTTGTAT 59.051 37.500 0.00 0.00 45.15 2.29
2375 6221 4.155826 GTGTTGGCTATGTGCATCTTTGTA 59.844 41.667 0.00 0.00 45.15 2.41
2376 6222 3.057315 GTGTTGGCTATGTGCATCTTTGT 60.057 43.478 0.00 0.00 45.15 2.83
2377 6223 3.504863 GTGTTGGCTATGTGCATCTTTG 58.495 45.455 0.00 0.00 45.15 2.77
2378 6224 2.493278 GGTGTTGGCTATGTGCATCTTT 59.507 45.455 0.00 0.00 45.15 2.52
2379 6225 2.094675 GGTGTTGGCTATGTGCATCTT 58.905 47.619 0.00 0.00 45.15 2.40
2380 6226 1.004628 TGGTGTTGGCTATGTGCATCT 59.995 47.619 0.00 0.00 45.15 2.90
2381 6227 1.462616 TGGTGTTGGCTATGTGCATC 58.537 50.000 0.00 0.00 45.15 3.91
2382 6228 1.921982 TTGGTGTTGGCTATGTGCAT 58.078 45.000 0.00 0.00 45.15 3.96
2383 6229 1.921982 ATTGGTGTTGGCTATGTGCA 58.078 45.000 0.00 0.00 45.15 4.57
2384 6230 2.752354 TGTATTGGTGTTGGCTATGTGC 59.248 45.455 0.00 0.00 41.94 4.57
2385 6231 3.755905 TGTGTATTGGTGTTGGCTATGTG 59.244 43.478 0.00 0.00 0.00 3.21
2386 6232 3.756434 GTGTGTATTGGTGTTGGCTATGT 59.244 43.478 0.00 0.00 0.00 2.29
2387 6233 3.755905 TGTGTGTATTGGTGTTGGCTATG 59.244 43.478 0.00 0.00 0.00 2.23
2388 6234 4.027674 TGTGTGTATTGGTGTTGGCTAT 57.972 40.909 0.00 0.00 0.00 2.97
2389 6235 3.493767 TGTGTGTATTGGTGTTGGCTA 57.506 42.857 0.00 0.00 0.00 3.93
2390 6236 2.356665 TGTGTGTATTGGTGTTGGCT 57.643 45.000 0.00 0.00 0.00 4.75
2391 6237 3.504134 TGTATGTGTGTATTGGTGTTGGC 59.496 43.478 0.00 0.00 0.00 4.52
2392 6238 5.697473 TTGTATGTGTGTATTGGTGTTGG 57.303 39.130 0.00 0.00 0.00 3.77
2393 6239 7.325821 GTGATTTGTATGTGTGTATTGGTGTTG 59.674 37.037 0.00 0.00 0.00 3.33
2394 6240 7.013750 TGTGATTTGTATGTGTGTATTGGTGTT 59.986 33.333 0.00 0.00 0.00 3.32
2395 6241 6.488344 TGTGATTTGTATGTGTGTATTGGTGT 59.512 34.615 0.00 0.00 0.00 4.16
2396 6242 6.801377 GTGTGATTTGTATGTGTGTATTGGTG 59.199 38.462 0.00 0.00 0.00 4.17
2397 6243 6.072175 GGTGTGATTTGTATGTGTGTATTGGT 60.072 38.462 0.00 0.00 0.00 3.67
2398 6244 6.072230 TGGTGTGATTTGTATGTGTGTATTGG 60.072 38.462 0.00 0.00 0.00 3.16
2399 6245 6.907741 TGGTGTGATTTGTATGTGTGTATTG 58.092 36.000 0.00 0.00 0.00 1.90
2400 6246 6.349280 GCTGGTGTGATTTGTATGTGTGTATT 60.349 38.462 0.00 0.00 0.00 1.89
2401 6247 5.123820 GCTGGTGTGATTTGTATGTGTGTAT 59.876 40.000 0.00 0.00 0.00 2.29
2402 6248 4.454161 GCTGGTGTGATTTGTATGTGTGTA 59.546 41.667 0.00 0.00 0.00 2.90
2403 6249 3.253188 GCTGGTGTGATTTGTATGTGTGT 59.747 43.478 0.00 0.00 0.00 3.72
2404 6250 3.252944 TGCTGGTGTGATTTGTATGTGTG 59.747 43.478 0.00 0.00 0.00 3.82
2405 6251 3.485394 TGCTGGTGTGATTTGTATGTGT 58.515 40.909 0.00 0.00 0.00 3.72
2406 6252 4.022935 AGTTGCTGGTGTGATTTGTATGTG 60.023 41.667 0.00 0.00 0.00 3.21
2407 6253 4.144297 AGTTGCTGGTGTGATTTGTATGT 58.856 39.130 0.00 0.00 0.00 2.29
2408 6254 4.771590 AGTTGCTGGTGTGATTTGTATG 57.228 40.909 0.00 0.00 0.00 2.39
2409 6255 6.892658 TTTAGTTGCTGGTGTGATTTGTAT 57.107 33.333 0.00 0.00 0.00 2.29
2410 6256 6.095580 TGTTTTAGTTGCTGGTGTGATTTGTA 59.904 34.615 0.00 0.00 0.00 2.41
2411 6257 5.105554 TGTTTTAGTTGCTGGTGTGATTTGT 60.106 36.000 0.00 0.00 0.00 2.83
2412 6258 5.347342 TGTTTTAGTTGCTGGTGTGATTTG 58.653 37.500 0.00 0.00 0.00 2.32
2413 6259 5.590530 TGTTTTAGTTGCTGGTGTGATTT 57.409 34.783 0.00 0.00 0.00 2.17
2414 6260 5.789643 ATGTTTTAGTTGCTGGTGTGATT 57.210 34.783 0.00 0.00 0.00 2.57
2415 6261 5.789643 AATGTTTTAGTTGCTGGTGTGAT 57.210 34.783 0.00 0.00 0.00 3.06
2416 6262 5.590530 AAATGTTTTAGTTGCTGGTGTGA 57.409 34.783 0.00 0.00 0.00 3.58
2417 6263 6.978080 ACTTAAATGTTTTAGTTGCTGGTGTG 59.022 34.615 0.00 0.00 26.56 3.82
2418 6264 7.107639 ACTTAAATGTTTTAGTTGCTGGTGT 57.892 32.000 0.00 0.00 26.56 4.16
2419 6265 8.327429 CAAACTTAAATGTTTTAGTTGCTGGTG 58.673 33.333 9.74 2.65 38.59 4.17
2420 6266 8.254508 TCAAACTTAAATGTTTTAGTTGCTGGT 58.745 29.630 9.74 0.00 38.59 4.00
2421 6267 8.641499 TCAAACTTAAATGTTTTAGTTGCTGG 57.359 30.769 9.74 3.12 38.59 4.85
2423 6269 9.869757 ACTTCAAACTTAAATGTTTTAGTTGCT 57.130 25.926 9.74 0.00 38.59 3.91
2424 6270 9.900264 CACTTCAAACTTAAATGTTTTAGTTGC 57.100 29.630 9.74 0.00 38.59 4.17
2471 6317 9.543783 GTATTAGATAGTTCCTCGGTCAATTTT 57.456 33.333 0.00 0.00 0.00 1.82
2472 6318 8.925338 AGTATTAGATAGTTCCTCGGTCAATTT 58.075 33.333 0.00 0.00 0.00 1.82
2473 6319 8.480133 AGTATTAGATAGTTCCTCGGTCAATT 57.520 34.615 0.00 0.00 0.00 2.32
2474 6320 9.756571 ATAGTATTAGATAGTTCCTCGGTCAAT 57.243 33.333 0.00 0.00 0.00 2.57
2475 6321 9.584008 AATAGTATTAGATAGTTCCTCGGTCAA 57.416 33.333 0.00 0.00 0.00 3.18
2489 6335 9.584008 TGGTCCTCGAAAGTAATAGTATTAGAT 57.416 33.333 2.71 0.00 0.00 1.98
2490 6336 8.985315 TGGTCCTCGAAAGTAATAGTATTAGA 57.015 34.615 2.71 0.00 0.00 2.10
2491 6337 9.064706 TCTGGTCCTCGAAAGTAATAGTATTAG 57.935 37.037 2.71 0.00 0.00 1.73
2492 6338 8.985315 TCTGGTCCTCGAAAGTAATAGTATTA 57.015 34.615 0.00 0.00 0.00 0.98
2493 6339 7.893124 TCTGGTCCTCGAAAGTAATAGTATT 57.107 36.000 0.17 0.17 0.00 1.89
2494 6340 7.893124 TTCTGGTCCTCGAAAGTAATAGTAT 57.107 36.000 0.00 0.00 0.00 2.12
2495 6341 7.558807 TCATTCTGGTCCTCGAAAGTAATAGTA 59.441 37.037 0.00 0.00 0.00 1.82
2496 6342 6.380274 TCATTCTGGTCCTCGAAAGTAATAGT 59.620 38.462 0.00 0.00 0.00 2.12
2497 6343 6.806751 TCATTCTGGTCCTCGAAAGTAATAG 58.193 40.000 0.00 0.00 0.00 1.73
2498 6344 6.785337 TCATTCTGGTCCTCGAAAGTAATA 57.215 37.500 0.00 0.00 0.00 0.98
2499 6345 5.677319 TCATTCTGGTCCTCGAAAGTAAT 57.323 39.130 0.00 0.00 0.00 1.89
2500 6346 5.419542 CATCATTCTGGTCCTCGAAAGTAA 58.580 41.667 0.00 0.00 0.00 2.24
2501 6347 4.680708 GCATCATTCTGGTCCTCGAAAGTA 60.681 45.833 0.00 0.00 0.00 2.24
2502 6348 3.866651 CATCATTCTGGTCCTCGAAAGT 58.133 45.455 0.00 0.00 0.00 2.66
2503 6349 2.611292 GCATCATTCTGGTCCTCGAAAG 59.389 50.000 0.00 0.00 0.00 2.62
2504 6350 2.237143 AGCATCATTCTGGTCCTCGAAA 59.763 45.455 0.00 0.00 0.00 3.46
2505 6351 1.833630 AGCATCATTCTGGTCCTCGAA 59.166 47.619 0.00 0.00 0.00 3.71
2506 6352 1.410517 GAGCATCATTCTGGTCCTCGA 59.589 52.381 0.00 0.00 37.62 4.04
2507 6353 1.411977 AGAGCATCATTCTGGTCCTCG 59.588 52.381 0.07 0.00 43.11 4.63
2508 6354 4.888326 ATAGAGCATCATTCTGGTCCTC 57.112 45.455 0.07 0.00 43.11 3.71
2509 6355 6.262980 AGATATAGAGCATCATTCTGGTCCT 58.737 40.000 0.07 0.00 43.11 3.85
2510 6356 6.543430 AGATATAGAGCATCATTCTGGTCC 57.457 41.667 0.07 0.00 43.11 4.46
2511 6357 8.845413 AAAAGATATAGAGCATCATTCTGGTC 57.155 34.615 0.00 0.00 42.57 4.02
2512 6358 9.282569 GAAAAAGATATAGAGCATCATTCTGGT 57.717 33.333 0.00 0.00 37.82 4.00
2513 6359 8.728833 GGAAAAAGATATAGAGCATCATTCTGG 58.271 37.037 0.00 0.00 37.82 3.86
2514 6360 9.281371 TGGAAAAAGATATAGAGCATCATTCTG 57.719 33.333 0.00 0.00 37.82 3.02
2515 6361 9.857656 TTGGAAAAAGATATAGAGCATCATTCT 57.142 29.630 0.00 0.00 37.82 2.40
2518 6364 9.240734 GGATTGGAAAAAGATATAGAGCATCAT 57.759 33.333 0.00 0.00 37.82 2.45
2519 6365 7.667219 GGGATTGGAAAAAGATATAGAGCATCA 59.333 37.037 0.00 0.00 37.82 3.07
2520 6366 7.148340 CGGGATTGGAAAAAGATATAGAGCATC 60.148 40.741 0.00 0.00 0.00 3.91
2521 6367 6.656693 CGGGATTGGAAAAAGATATAGAGCAT 59.343 38.462 0.00 0.00 0.00 3.79
2522 6368 5.997746 CGGGATTGGAAAAAGATATAGAGCA 59.002 40.000 0.00 0.00 0.00 4.26
2523 6369 5.412904 CCGGGATTGGAAAAAGATATAGAGC 59.587 44.000 0.00 0.00 0.00 4.09
2524 6370 5.412904 GCCGGGATTGGAAAAAGATATAGAG 59.587 44.000 2.18 0.00 0.00 2.43
2525 6371 5.163141 TGCCGGGATTGGAAAAAGATATAGA 60.163 40.000 2.18 0.00 0.00 1.98
2526 6372 5.070001 TGCCGGGATTGGAAAAAGATATAG 58.930 41.667 2.18 0.00 0.00 1.31
2527 6373 5.055265 TGCCGGGATTGGAAAAAGATATA 57.945 39.130 2.18 0.00 0.00 0.86
2528 6374 3.909732 TGCCGGGATTGGAAAAAGATAT 58.090 40.909 2.18 0.00 0.00 1.63
2529 6375 3.374042 TGCCGGGATTGGAAAAAGATA 57.626 42.857 2.18 0.00 0.00 1.98
2530 6376 2.230130 TGCCGGGATTGGAAAAAGAT 57.770 45.000 2.18 0.00 0.00 2.40
2531 6377 2.002505 TTGCCGGGATTGGAAAAAGA 57.997 45.000 2.18 0.00 0.00 2.52
2532 6378 2.612721 CCTTTGCCGGGATTGGAAAAAG 60.613 50.000 2.18 0.00 36.08 2.27
2533 6379 1.346068 CCTTTGCCGGGATTGGAAAAA 59.654 47.619 2.18 0.00 36.08 1.94
2534 6380 0.972883 CCTTTGCCGGGATTGGAAAA 59.027 50.000 2.18 0.00 33.98 2.29
2535 6381 0.113385 TCCTTTGCCGGGATTGGAAA 59.887 50.000 13.59 0.00 0.00 3.13
2536 6382 0.113385 TTCCTTTGCCGGGATTGGAA 59.887 50.000 20.68 20.68 32.41 3.53
2537 6383 0.113385 TTTCCTTTGCCGGGATTGGA 59.887 50.000 12.28 12.28 32.41 3.53
2538 6384 0.532115 CTTTCCTTTGCCGGGATTGG 59.468 55.000 2.18 5.94 32.41 3.16
2539 6385 0.108662 GCTTTCCTTTGCCGGGATTG 60.109 55.000 2.18 0.00 32.41 2.67
2540 6386 1.257750 GGCTTTCCTTTGCCGGGATT 61.258 55.000 2.18 0.00 39.71 3.01
2541 6387 1.682344 GGCTTTCCTTTGCCGGGAT 60.682 57.895 2.18 0.00 39.71 3.85
2542 6388 2.282887 GGCTTTCCTTTGCCGGGA 60.283 61.111 2.18 0.00 39.71 5.14
2547 6393 2.784347 ACTCTACTGGCTTTCCTTTGC 58.216 47.619 0.00 0.00 0.00 3.68
2548 6394 4.333926 GCATACTCTACTGGCTTTCCTTTG 59.666 45.833 0.00 0.00 0.00 2.77
2549 6395 4.518249 GCATACTCTACTGGCTTTCCTTT 58.482 43.478 0.00 0.00 0.00 3.11
2550 6396 3.118223 GGCATACTCTACTGGCTTTCCTT 60.118 47.826 0.00 0.00 35.25 3.36
2551 6397 2.436173 GGCATACTCTACTGGCTTTCCT 59.564 50.000 0.00 0.00 35.25 3.36
2552 6398 2.436173 AGGCATACTCTACTGGCTTTCC 59.564 50.000 0.00 0.00 44.98 3.13
2553 6399 3.828875 AGGCATACTCTACTGGCTTTC 57.171 47.619 0.00 0.00 44.98 2.62
2557 6403 1.486726 ACCAAGGCATACTCTACTGGC 59.513 52.381 0.00 0.00 38.15 4.85
2558 6404 3.914426 AACCAAGGCATACTCTACTGG 57.086 47.619 0.00 0.00 0.00 4.00
2559 6405 6.640518 TCTTAAACCAAGGCATACTCTACTG 58.359 40.000 0.00 0.00 34.76 2.74
2560 6406 6.869206 TCTTAAACCAAGGCATACTCTACT 57.131 37.500 0.00 0.00 34.76 2.57
2561 6407 7.916914 TTTCTTAAACCAAGGCATACTCTAC 57.083 36.000 0.00 0.00 34.76 2.59
2562 6408 8.325787 TCATTTCTTAAACCAAGGCATACTCTA 58.674 33.333 0.00 0.00 34.76 2.43
2563 6409 7.175104 TCATTTCTTAAACCAAGGCATACTCT 58.825 34.615 0.00 0.00 34.76 3.24
2564 6410 7.391148 TCATTTCTTAAACCAAGGCATACTC 57.609 36.000 0.00 0.00 34.76 2.59
2565 6411 7.577616 GCTTCATTTCTTAAACCAAGGCATACT 60.578 37.037 0.00 0.00 34.76 2.12
2566 6412 6.531594 GCTTCATTTCTTAAACCAAGGCATAC 59.468 38.462 0.00 0.00 34.76 2.39
2567 6413 6.210385 TGCTTCATTTCTTAAACCAAGGCATA 59.790 34.615 0.00 0.00 34.76 3.14
2568 6414 5.011943 TGCTTCATTTCTTAAACCAAGGCAT 59.988 36.000 0.00 0.00 34.76 4.40
2569 6415 4.343526 TGCTTCATTTCTTAAACCAAGGCA 59.656 37.500 0.00 0.00 34.76 4.75
2570 6416 4.881920 TGCTTCATTTCTTAAACCAAGGC 58.118 39.130 0.00 0.00 34.76 4.35
2571 6417 6.690530 TGATGCTTCATTTCTTAAACCAAGG 58.309 36.000 0.00 0.00 34.76 3.61
2572 6418 7.330208 CCTTGATGCTTCATTTCTTAAACCAAG 59.670 37.037 2.75 0.00 35.38 3.61
2573 6419 7.153985 CCTTGATGCTTCATTTCTTAAACCAA 58.846 34.615 2.75 0.00 0.00 3.67
2574 6420 6.295236 CCCTTGATGCTTCATTTCTTAAACCA 60.295 38.462 2.75 0.00 0.00 3.67
2575 6421 6.071391 TCCCTTGATGCTTCATTTCTTAAACC 60.071 38.462 2.75 0.00 0.00 3.27
2576 6422 6.924111 TCCCTTGATGCTTCATTTCTTAAAC 58.076 36.000 2.75 0.00 0.00 2.01
2577 6423 7.722949 ATCCCTTGATGCTTCATTTCTTAAA 57.277 32.000 2.75 0.00 0.00 1.52
2578 6424 7.833682 TGTATCCCTTGATGCTTCATTTCTTAA 59.166 33.333 2.75 0.00 34.94 1.85
2579 6425 7.345691 TGTATCCCTTGATGCTTCATTTCTTA 58.654 34.615 2.75 0.00 34.94 2.10
2580 6426 6.189859 TGTATCCCTTGATGCTTCATTTCTT 58.810 36.000 2.75 0.00 34.94 2.52
2581 6427 5.759059 TGTATCCCTTGATGCTTCATTTCT 58.241 37.500 2.75 0.00 34.94 2.52
2582 6428 6.455360 TTGTATCCCTTGATGCTTCATTTC 57.545 37.500 2.75 0.00 34.94 2.17
2583 6429 6.855763 TTTGTATCCCTTGATGCTTCATTT 57.144 33.333 2.75 0.00 34.94 2.32
2584 6430 7.560991 TGTATTTGTATCCCTTGATGCTTCATT 59.439 33.333 2.75 0.00 34.94 2.57
2585 6431 7.062322 TGTATTTGTATCCCTTGATGCTTCAT 58.938 34.615 2.75 0.00 34.94 2.57
2586 6432 6.422333 TGTATTTGTATCCCTTGATGCTTCA 58.578 36.000 0.00 0.00 34.94 3.02
2587 6433 6.942532 TGTATTTGTATCCCTTGATGCTTC 57.057 37.500 0.00 0.00 34.94 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.