Multiple sequence alignment - TraesCS6B01G112000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G112000 chr6B 100.000 3256 0 0 1 3256 93832877 93829622 0.000000e+00 6013.0
1 TraesCS6B01G112000 chr6B 82.448 1111 127 41 1591 2662 93823073 93821992 0.000000e+00 909.0
2 TraesCS6B01G112000 chr6B 92.508 307 22 1 82 388 139895797 139896102 3.860000e-119 438.0
3 TraesCS6B01G112000 chr6B 83.816 414 50 6 990 1403 93840166 93839770 8.530000e-101 377.0
4 TraesCS6B01G112000 chr6B 88.845 251 16 3 546 790 137988396 137988640 6.830000e-77 298.0
5 TraesCS6B01G112000 chr6B 81.503 346 55 3 1071 1407 93913924 93913579 3.200000e-70 276.0
6 TraesCS6B01G112000 chr6B 84.519 239 37 0 1079 1317 45617457 45617219 1.510000e-58 237.0
7 TraesCS6B01G112000 chr6B 89.231 130 14 0 1079 1208 45599209 45599080 2.600000e-36 163.0
8 TraesCS6B01G112000 chr6A 95.068 953 42 2 1723 2675 57887671 57886724 0.000000e+00 1495.0
9 TraesCS6B01G112000 chr6A 83.072 957 98 34 1505 2418 57764314 57763379 0.000000e+00 811.0
10 TraesCS6B01G112000 chr6A 94.241 382 14 1 2676 3049 57886648 57886267 7.830000e-161 577.0
11 TraesCS6B01G112000 chr6A 85.009 527 56 10 950 1473 57764821 57764315 6.230000e-142 514.0
12 TraesCS6B01G112000 chr6A 84.289 401 48 3 990 1390 57931083 57930698 8.530000e-101 377.0
13 TraesCS6B01G112000 chr6A 85.609 271 39 0 1079 1349 26621671 26621401 5.320000e-73 285.0
14 TraesCS6B01G112000 chr6A 88.048 251 17 5 546 790 127525768 127525525 5.320000e-73 285.0
15 TraesCS6B01G112000 chr6A 82.006 339 52 3 1078 1407 58009728 58009390 2.470000e-71 279.0
16 TraesCS6B01G112000 chr6A 90.909 110 6 4 794 901 57764936 57764829 9.420000e-31 145.0
17 TraesCS6B01G112000 chrUn 86.563 707 78 12 1583 2273 19129444 19130149 0.000000e+00 763.0
18 TraesCS6B01G112000 chrUn 82.007 817 119 18 789 1583 19128498 19129308 0.000000e+00 669.0
19 TraesCS6B01G112000 chrUn 81.340 418 61 6 990 1407 19066784 19067184 1.130000e-84 324.0
20 TraesCS6B01G112000 chrUn 82.596 339 50 3 1078 1407 18917935 18918273 1.140000e-74 291.0
21 TraesCS6B01G112000 chrUn 84.800 125 19 0 1591 1715 19067432 19067556 3.410000e-25 126.0
22 TraesCS6B01G112000 chr7B 93.811 307 19 0 82 388 98763250 98762944 2.290000e-126 462.0
23 TraesCS6B01G112000 chr7B 92.233 309 23 1 80 388 148766752 148767059 1.390000e-118 436.0
24 TraesCS6B01G112000 chr7B 84.350 377 28 15 420 789 148767203 148767555 1.120000e-89 340.0
25 TraesCS6B01G112000 chr7B 93.780 209 13 0 3048 3256 726830036 726829828 6.780000e-82 315.0
26 TraesCS6B01G112000 chr7B 85.714 133 9 2 420 543 449033324 449033193 7.330000e-27 132.0
27 TraesCS6B01G112000 chr2B 93.811 307 16 1 82 388 60967754 60968057 2.960000e-125 459.0
28 TraesCS6B01G112000 chr2B 90.549 328 27 4 64 388 448714062 448714388 6.450000e-117 431.0
29 TraesCS6B01G112000 chr2B 83.598 378 32 15 420 792 60968201 60968553 8.710000e-86 327.0
30 TraesCS6B01G112000 chr2B 91.736 121 8 2 3046 3165 45605943 45606062 2.010000e-37 167.0
31 TraesCS6B01G112000 chr5B 93.443 305 19 1 84 388 492105450 492105753 4.950000e-123 451.0
32 TraesCS6B01G112000 chr5B 87.056 394 30 10 420 798 492105898 492106285 3.000000e-115 425.0
33 TraesCS6B01G112000 chr5B 91.011 178 16 0 3050 3227 666860336 666860513 1.170000e-59 241.0
34 TraesCS6B01G112000 chr5B 89.189 185 19 1 3050 3234 271785598 271785415 2.530000e-56 230.0
35 TraesCS6B01G112000 chr4B 88.601 386 24 6 420 791 71340127 71340506 4.950000e-123 451.0
36 TraesCS6B01G112000 chr4B 92.834 307 21 1 82 388 21150677 21150372 8.290000e-121 444.0
37 TraesCS6B01G112000 chr4B 92.787 305 22 0 84 388 396636106 396636410 2.980000e-120 442.0
38 TraesCS6B01G112000 chr4B 92.508 307 22 1 82 388 71339677 71339982 3.860000e-119 438.0
39 TraesCS6B01G112000 chr4B 82.383 386 37 16 420 800 396636554 396636913 1.130000e-79 307.0
40 TraesCS6B01G112000 chr4B 89.200 250 15 3 546 789 21150268 21150025 5.280000e-78 302.0
41 TraesCS6B01G112000 chr4B 88.800 250 16 3 546 789 20686337 20686580 2.460000e-76 296.0
42 TraesCS6B01G112000 chr4B 90.233 215 18 2 3044 3256 5260060 5260273 8.900000e-71 278.0
43 TraesCS6B01G112000 chr4B 90.426 188 18 0 3047 3234 381110685 381110872 6.980000e-62 248.0
44 TraesCS6B01G112000 chr1D 82.857 385 38 20 420 799 411043599 411043238 1.460000e-83 320.0
45 TraesCS6B01G112000 chr1D 85.039 127 10 1 426 543 236266220 236266094 1.590000e-23 121.0
46 TraesCS6B01G112000 chr1B 83.069 378 18 7 424 787 89019258 89018913 5.280000e-78 302.0
47 TraesCS6B01G112000 chr1B 90.426 188 15 1 3050 3234 143087060 143087247 9.020000e-61 244.0
48 TraesCS6B01G112000 chr1B 88.108 185 22 0 3050 3234 483597929 483598113 1.520000e-53 220.0
49 TraesCS6B01G112000 chr5A 81.675 382 25 14 424 791 601142795 601143145 3.200000e-70 276.0
50 TraesCS6B01G112000 chr7A 80.260 385 28 7 420 790 19531172 19531522 2.510000e-61 246.0
51 TraesCS6B01G112000 chr3A 78.780 377 44 17 420 791 633958832 633958487 1.520000e-53 220.0
52 TraesCS6B01G112000 chr3A 85.430 151 16 4 424 569 494792489 494792638 5.630000e-33 152.0
53 TraesCS6B01G112000 chr5D 93.827 81 5 0 420 500 204511287 204511207 4.410000e-24 122.0
54 TraesCS6B01G112000 chr3D 80.672 119 20 3 3093 3210 448826525 448826641 4.470000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G112000 chr6B 93829622 93832877 3255 True 6013.0 6013 100.0000 1 3256 1 chr6B.!!$R4 3255
1 TraesCS6B01G112000 chr6B 93821992 93823073 1081 True 909.0 909 82.4480 1591 2662 1 chr6B.!!$R3 1071
2 TraesCS6B01G112000 chr6A 57886267 57887671 1404 True 1036.0 1495 94.6545 1723 3049 2 chr6A.!!$R6 1326
3 TraesCS6B01G112000 chr6A 57763379 57764936 1557 True 490.0 811 86.3300 794 2418 3 chr6A.!!$R5 1624
4 TraesCS6B01G112000 chrUn 19128498 19130149 1651 False 716.0 763 84.2850 789 2273 2 chrUn.!!$F3 1484
5 TraesCS6B01G112000 chrUn 19066784 19067556 772 False 225.0 324 83.0700 990 1715 2 chrUn.!!$F2 725
6 TraesCS6B01G112000 chr7B 148766752 148767555 803 False 388.0 436 88.2915 80 789 2 chr7B.!!$F1 709
7 TraesCS6B01G112000 chr2B 60967754 60968553 799 False 393.0 459 88.7045 82 792 2 chr2B.!!$F3 710
8 TraesCS6B01G112000 chr5B 492105450 492106285 835 False 438.0 451 90.2495 84 798 2 chr5B.!!$F2 714
9 TraesCS6B01G112000 chr4B 71339677 71340506 829 False 444.5 451 90.5545 82 791 2 chr4B.!!$F4 709
10 TraesCS6B01G112000 chr4B 396636106 396636913 807 False 374.5 442 87.5850 84 800 2 chr4B.!!$F5 716
11 TraesCS6B01G112000 chr4B 21150025 21150677 652 True 373.0 444 91.0170 82 789 2 chr4B.!!$R1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 981 0.107848 CCGACCCTAAACAGCCGAAT 60.108 55.0 0.0 0.0 0.0 3.34 F
1446 1678 0.034896 ACGGCGCTTATCTTATGGGG 59.965 55.0 6.9 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1658 2081 0.388659 TCGCCTTTGCAAATGCTTGT 59.611 45.0 28.85 0.0 42.66 3.16 R
3187 3762 0.396435 TGACCGGTCAACAGATTGCT 59.604 50.0 34.60 0.0 36.53 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.848948 AAAAGAAAAACCAAACAAAACTTGTG 57.151 26.923 0.00 0.00 44.59 3.33
39 40 6.552859 AGAAAAACCAAACAAAACTTGTGG 57.447 33.333 0.00 0.00 44.59 4.17
40 41 6.292150 AGAAAAACCAAACAAAACTTGTGGA 58.708 32.000 3.73 0.00 44.59 4.02
41 42 6.768381 AGAAAAACCAAACAAAACTTGTGGAA 59.232 30.769 3.73 0.00 44.59 3.53
42 43 6.944234 AAAACCAAACAAAACTTGTGGAAA 57.056 29.167 3.73 0.00 44.59 3.13
43 44 6.944234 AAACCAAACAAAACTTGTGGAAAA 57.056 29.167 3.73 0.00 44.59 2.29
44 45 7.517614 AAACCAAACAAAACTTGTGGAAAAT 57.482 28.000 3.73 0.00 44.59 1.82
45 46 8.622948 AAACCAAACAAAACTTGTGGAAAATA 57.377 26.923 3.73 0.00 44.59 1.40
46 47 8.800370 AACCAAACAAAACTTGTGGAAAATAT 57.200 26.923 3.73 0.00 44.59 1.28
47 48 9.892130 AACCAAACAAAACTTGTGGAAAATATA 57.108 25.926 3.73 0.00 44.59 0.86
61 62 9.878667 TGTGGAAAATATATAACGAAGAAGACA 57.121 29.630 0.00 0.00 0.00 3.41
175 176 0.704076 AAGCAATCTGGCCCAGGTAA 59.296 50.000 11.68 0.00 31.51 2.85
375 376 7.413438 GGTCATCATATTTAGGCGAGCTAATTG 60.413 40.741 0.00 0.00 0.00 2.32
395 396 1.876322 AGCGAATGAGCTTCATAGGC 58.124 50.000 0.00 0.95 46.80 3.93
396 397 0.871057 GCGAATGAGCTTCATAGGCC 59.129 55.000 0.00 0.00 35.76 5.19
397 398 1.542108 GCGAATGAGCTTCATAGGCCT 60.542 52.381 11.78 11.78 35.76 5.19
406 466 4.130118 AGCTTCATAGGCCTGATAAAACG 58.870 43.478 17.99 0.00 0.00 3.60
407 467 4.127171 GCTTCATAGGCCTGATAAAACGA 58.873 43.478 17.99 0.00 0.00 3.85
411 471 4.161565 TCATAGGCCTGATAAAACGAGTGT 59.838 41.667 17.99 0.00 0.00 3.55
412 472 3.418684 AGGCCTGATAAAACGAGTGTT 57.581 42.857 3.11 0.00 40.98 3.32
413 473 3.074412 AGGCCTGATAAAACGAGTGTTG 58.926 45.455 3.11 0.00 38.62 3.33
414 474 3.071479 GGCCTGATAAAACGAGTGTTGA 58.929 45.455 0.00 0.00 38.62 3.18
415 475 3.689649 GGCCTGATAAAACGAGTGTTGAT 59.310 43.478 0.00 0.00 38.62 2.57
416 476 4.156008 GGCCTGATAAAACGAGTGTTGATT 59.844 41.667 0.00 0.00 38.62 2.57
417 477 5.353123 GGCCTGATAAAACGAGTGTTGATTA 59.647 40.000 0.00 0.00 38.62 1.75
615 739 5.919348 ATGGAATCAGTGGGAGATTATGT 57.081 39.130 0.00 0.00 35.93 2.29
633 757 4.654091 ATGTCCGGCAAAGAAAATATGG 57.346 40.909 0.00 0.00 0.00 2.74
685 809 5.295431 TGTTCATTTTGTAGAAGGATGCG 57.705 39.130 0.00 0.00 0.00 4.73
686 810 4.155826 TGTTCATTTTGTAGAAGGATGCGG 59.844 41.667 0.00 0.00 0.00 5.69
687 811 4.214986 TCATTTTGTAGAAGGATGCGGA 57.785 40.909 0.00 0.00 0.00 5.54
688 812 4.780815 TCATTTTGTAGAAGGATGCGGAT 58.219 39.130 0.00 0.00 0.00 4.18
689 813 4.576053 TCATTTTGTAGAAGGATGCGGATG 59.424 41.667 0.00 0.00 0.00 3.51
690 814 1.953559 TTGTAGAAGGATGCGGATGC 58.046 50.000 0.00 0.00 43.20 3.91
823 954 4.720046 AGAAGAAACCAAGAAGAAGACCC 58.280 43.478 0.00 0.00 0.00 4.46
844 976 0.803117 GAAAGCCGACCCTAAACAGC 59.197 55.000 0.00 0.00 0.00 4.40
849 981 0.107848 CCGACCCTAAACAGCCGAAT 60.108 55.000 0.00 0.00 0.00 3.34
904 1036 3.502123 AGGCACTTTAACCAGCACTAA 57.498 42.857 0.00 0.00 27.25 2.24
906 1038 4.211920 AGGCACTTTAACCAGCACTAAAA 58.788 39.130 0.00 0.00 27.25 1.52
907 1039 4.832823 AGGCACTTTAACCAGCACTAAAAT 59.167 37.500 0.00 0.00 27.25 1.82
908 1040 6.007703 AGGCACTTTAACCAGCACTAAAATA 58.992 36.000 0.00 0.00 27.25 1.40
909 1041 6.492087 AGGCACTTTAACCAGCACTAAAATAA 59.508 34.615 0.00 0.00 27.25 1.40
910 1042 7.014808 AGGCACTTTAACCAGCACTAAAATAAA 59.985 33.333 0.00 0.00 27.25 1.40
911 1043 7.817478 GGCACTTTAACCAGCACTAAAATAAAT 59.183 33.333 0.00 0.00 0.00 1.40
912 1044 9.849166 GCACTTTAACCAGCACTAAAATAAATA 57.151 29.630 0.00 0.00 0.00 1.40
918 1050 6.848451 ACCAGCACTAAAATAAATACCAACG 58.152 36.000 0.00 0.00 0.00 4.10
919 1051 6.655848 ACCAGCACTAAAATAAATACCAACGA 59.344 34.615 0.00 0.00 0.00 3.85
920 1052 7.175293 ACCAGCACTAAAATAAATACCAACGAA 59.825 33.333 0.00 0.00 0.00 3.85
922 1054 9.567848 CAGCACTAAAATAAATACCAACGAAAT 57.432 29.630 0.00 0.00 0.00 2.17
933 1068 2.418628 ACCAACGAAATAACAGCCATCG 59.581 45.455 0.00 0.00 39.30 3.84
944 1079 2.513897 GCCATCGGCCCACACTAC 60.514 66.667 0.00 0.00 44.06 2.73
948 1083 1.529226 CATCGGCCCACACTACAAAA 58.471 50.000 0.00 0.00 0.00 2.44
957 1092 4.759782 CCCACACTACAAAAGATCGATCT 58.240 43.478 22.32 22.32 39.22 2.75
969 1104 3.330853 CGATCTAAGCCGGTGCGC 61.331 66.667 1.90 0.00 44.33 6.09
1038 1173 2.046023 CTGGCGAGGGCATCACAA 60.046 61.111 0.00 0.00 42.47 3.33
1041 1176 2.742372 GCGAGGGCATCACAACGT 60.742 61.111 0.00 0.00 39.62 3.99
1064 1199 7.767198 ACGTATCCGATATTCCAAGAAAAGAAA 59.233 33.333 0.00 0.00 37.88 2.52
1131 1272 1.332195 CGGACCTCATCTCCTGCATA 58.668 55.000 0.00 0.00 0.00 3.14
1143 1284 1.399744 CCTGCATACTCCACCGGCTA 61.400 60.000 0.00 0.00 0.00 3.93
1149 1290 0.040058 TACTCCACCGGCTAGACCAA 59.960 55.000 0.00 0.00 39.03 3.67
1290 1431 2.703798 CCGCCCCAAGTTCAGCATG 61.704 63.158 0.00 0.00 37.54 4.06
1361 1502 4.504916 CCTGAGCGAGGGCGTCAG 62.505 72.222 8.06 0.00 46.35 3.51
1380 1521 3.626924 AACCGCACGCTCCTCCTT 61.627 61.111 0.00 0.00 0.00 3.36
1383 1524 2.262915 CGCACGCTCCTCCTTCTT 59.737 61.111 0.00 0.00 0.00 2.52
1390 1531 1.608717 GCTCCTCCTTCTTGCCGAGA 61.609 60.000 0.00 0.00 0.00 4.04
1425 1654 9.728100 ATTTAATTATTTCTTTCCTGATCCCCA 57.272 29.630 0.00 0.00 0.00 4.96
1429 1658 2.489938 TCTTTCCTGATCCCCAAACG 57.510 50.000 0.00 0.00 0.00 3.60
1430 1659 1.004277 TCTTTCCTGATCCCCAAACGG 59.996 52.381 0.00 0.00 0.00 4.44
1431 1660 0.610785 TTTCCTGATCCCCAAACGGC 60.611 55.000 0.00 0.00 0.00 5.68
1432 1661 2.813226 TTCCTGATCCCCAAACGGCG 62.813 60.000 4.80 4.80 0.00 6.46
1434 1666 3.976701 CTGATCCCCAAACGGCGCT 62.977 63.158 6.90 0.00 0.00 5.92
1438 1670 0.818040 ATCCCCAAACGGCGCTTATC 60.818 55.000 6.90 0.00 0.00 1.75
1439 1671 1.451387 CCCCAAACGGCGCTTATCT 60.451 57.895 6.90 0.00 0.00 1.98
1441 1673 1.658994 CCCAAACGGCGCTTATCTTA 58.341 50.000 6.90 0.00 0.00 2.10
1442 1674 2.218603 CCCAAACGGCGCTTATCTTAT 58.781 47.619 6.90 0.00 0.00 1.73
1446 1678 0.034896 ACGGCGCTTATCTTATGGGG 59.965 55.000 6.90 0.00 0.00 4.96
1449 1681 1.880027 GGCGCTTATCTTATGGGGTTG 59.120 52.381 7.64 0.00 0.00 3.77
1455 1687 2.459555 ATCTTATGGGGTTGCCCTTG 57.540 50.000 4.02 0.00 44.66 3.61
1459 1724 0.040499 TATGGGGTTGCCCTTGTTCC 59.960 55.000 4.02 0.00 44.66 3.62
1464 1729 1.001974 GGGTTGCCCTTGTTCCATTTC 59.998 52.381 0.00 0.00 41.34 2.17
1468 1733 4.222810 GGTTGCCCTTGTTCCATTTCTTAT 59.777 41.667 0.00 0.00 0.00 1.73
1473 1738 5.170748 CCCTTGTTCCATTTCTTATTGTGC 58.829 41.667 0.00 0.00 0.00 4.57
1477 1742 4.155826 TGTTCCATTTCTTATTGTGCTCCG 59.844 41.667 0.00 0.00 0.00 4.63
1478 1743 4.214986 TCCATTTCTTATTGTGCTCCGA 57.785 40.909 0.00 0.00 0.00 4.55
1479 1744 4.191544 TCCATTTCTTATTGTGCTCCGAG 58.808 43.478 0.00 0.00 0.00 4.63
1480 1745 3.242870 CCATTTCTTATTGTGCTCCGAGC 60.243 47.826 13.81 13.81 42.82 5.03
1565 1846 2.660715 GAGATGCTACGCTCATTCATCG 59.339 50.000 0.00 0.00 38.71 3.84
1573 1854 2.797156 ACGCTCATTCATCGCTCATAAC 59.203 45.455 0.00 0.00 0.00 1.89
1585 2008 7.436933 TCATCGCTCATAACTTCATAAGTCAT 58.563 34.615 0.00 0.00 41.91 3.06
1586 2009 8.576442 TCATCGCTCATAACTTCATAAGTCATA 58.424 33.333 0.00 0.00 41.91 2.15
1587 2010 8.642885 CATCGCTCATAACTTCATAAGTCATAC 58.357 37.037 0.00 0.00 41.91 2.39
1588 2011 7.941919 TCGCTCATAACTTCATAAGTCATACT 58.058 34.615 0.00 0.00 41.91 2.12
1589 2012 8.076781 TCGCTCATAACTTCATAAGTCATACTC 58.923 37.037 0.00 0.00 41.91 2.59
1610 2033 4.887748 TCTATCTAATGCTACCTTGCAGC 58.112 43.478 0.00 0.00 46.71 5.25
1643 2066 3.516700 TGAAGAGCCTTCATCTCATCACA 59.483 43.478 12.03 0.00 34.56 3.58
1649 2072 2.801111 CCTTCATCTCATCACATGCTCG 59.199 50.000 0.00 0.00 0.00 5.03
1655 2078 1.408340 CTCATCACATGCTCGGTCTCT 59.592 52.381 0.00 0.00 0.00 3.10
1658 2081 3.447229 TCATCACATGCTCGGTCTCTAAA 59.553 43.478 0.00 0.00 0.00 1.85
1663 2094 2.080286 TGCTCGGTCTCTAAACAAGC 57.920 50.000 0.00 0.00 32.87 4.01
1721 2152 3.118956 AGGAGCTTGAGATTTCACTACCG 60.119 47.826 0.00 0.00 31.71 4.02
1764 2195 0.458025 GGTTGAACTAGTCGCCGGAG 60.458 60.000 5.05 0.00 0.00 4.63
1773 2204 4.221422 TCGCCGGAGCATGCCTAC 62.221 66.667 15.66 6.32 39.83 3.18
1776 2207 2.590007 CCGGAGCATGCCTACAGC 60.590 66.667 15.66 0.00 44.14 4.40
1950 2381 1.404748 GCCACGACCTAGAGTACCTTC 59.595 57.143 0.00 0.00 0.00 3.46
1971 2402 3.376546 TGCGAGAGTGCAGCCTTA 58.623 55.556 0.00 0.00 40.62 2.69
2100 2531 8.974408 TGATTCGTTGTATTTATTATGACCTCG 58.026 33.333 0.00 0.00 0.00 4.63
2102 2533 9.706691 ATTCGTTGTATTTATTATGACCTCGAT 57.293 29.630 0.00 0.00 0.00 3.59
2103 2534 8.515473 TCGTTGTATTTATTATGACCTCGATG 57.485 34.615 0.00 0.00 0.00 3.84
2201 2644 2.102420 TGGTATTGACGATGCCGATCTT 59.898 45.455 5.43 0.00 42.93 2.40
2222 2665 7.581213 TCTTGAAGAGTATGAGAAGATCCTC 57.419 40.000 0.00 0.00 0.00 3.71
2244 2687 0.585357 CATCAAGAGCATGCGTAGGC 59.415 55.000 13.01 0.61 40.52 3.93
2264 2712 4.814771 AGGCACCTACGCTAATGAAATAAC 59.185 41.667 0.00 0.00 0.00 1.89
2333 2808 0.383949 TTGTTGCTTCAGTTTCGCCC 59.616 50.000 0.00 0.00 0.00 6.13
2349 2824 2.037251 TCGCCCTAGATTCCTGCATTAC 59.963 50.000 0.00 0.00 0.00 1.89
2357 2832 8.375506 CCCTAGATTCCTGCATTACTAATTGTA 58.624 37.037 0.00 0.00 0.00 2.41
2479 2959 9.353999 CTTGTTTACCTTAATATTGCCTGAAAC 57.646 33.333 0.00 4.59 0.00 2.78
2489 2977 2.885135 TGCCTGAAACATCACATCCT 57.115 45.000 0.00 0.00 0.00 3.24
2490 2978 3.998913 TGCCTGAAACATCACATCCTA 57.001 42.857 0.00 0.00 0.00 2.94
2491 2979 4.508551 TGCCTGAAACATCACATCCTAT 57.491 40.909 0.00 0.00 0.00 2.57
2492 2980 5.628797 TGCCTGAAACATCACATCCTATA 57.371 39.130 0.00 0.00 0.00 1.31
2542 3030 9.188588 CGTGAACTCATGTTTACTTTAAGACTA 57.811 33.333 0.00 0.00 39.56 2.59
2650 3142 2.012902 GATGTTGGCTGGAGCATGGC 62.013 60.000 0.20 0.00 44.36 4.40
2663 3155 1.508088 CATGGCGGAGGAAACTTGC 59.492 57.895 0.00 0.00 44.43 4.01
2664 3156 1.074775 ATGGCGGAGGAAACTTGCA 59.925 52.632 0.00 0.00 44.43 4.08
2830 3405 0.390998 GCAAGCTCCTGACCTCTGAC 60.391 60.000 0.00 0.00 0.00 3.51
2862 3437 0.859788 GTGTGTTTGCGGTTCACGTG 60.860 55.000 9.94 9.94 46.52 4.49
2864 3439 2.399356 TGTTTGCGGTTCACGTGCA 61.399 52.632 11.67 1.19 46.52 4.57
2983 3558 7.603404 TGGATGGATTTTGAAATCAACAACATC 59.397 33.333 15.95 16.07 45.10 3.06
3049 3624 3.298619 TGGCATGGTTCAATCCCATAAG 58.701 45.455 0.00 0.00 40.76 1.73
3050 3625 3.053019 TGGCATGGTTCAATCCCATAAGA 60.053 43.478 0.00 0.00 40.76 2.10
3051 3626 3.571401 GGCATGGTTCAATCCCATAAGAG 59.429 47.826 0.00 0.00 40.76 2.85
3052 3627 4.464008 GCATGGTTCAATCCCATAAGAGA 58.536 43.478 0.00 0.00 40.76 3.10
3053 3628 5.075493 GCATGGTTCAATCCCATAAGAGAT 58.925 41.667 0.00 0.00 40.76 2.75
3054 3629 6.240894 GCATGGTTCAATCCCATAAGAGATA 58.759 40.000 0.00 0.00 40.76 1.98
3055 3630 6.716628 GCATGGTTCAATCCCATAAGAGATAA 59.283 38.462 0.00 0.00 40.76 1.75
3056 3631 7.231317 GCATGGTTCAATCCCATAAGAGATAAA 59.769 37.037 0.00 0.00 40.76 1.40
3057 3632 9.305555 CATGGTTCAATCCCATAAGAGATAAAT 57.694 33.333 0.00 0.00 40.76 1.40
3059 3634 9.793259 TGGTTCAATCCCATAAGAGATAAATAC 57.207 33.333 0.00 0.00 0.00 1.89
3060 3635 9.793259 GGTTCAATCCCATAAGAGATAAATACA 57.207 33.333 0.00 0.00 0.00 2.29
3066 3641 8.195165 TCCCATAAGAGATAAATACACTGAGG 57.805 38.462 0.00 0.00 0.00 3.86
3067 3642 7.235606 TCCCATAAGAGATAAATACACTGAGGG 59.764 40.741 0.00 0.00 0.00 4.30
3068 3643 7.016661 CCCATAAGAGATAAATACACTGAGGGT 59.983 40.741 0.00 0.00 0.00 4.34
3069 3644 8.091449 CCATAAGAGATAAATACACTGAGGGTC 58.909 40.741 0.00 0.00 0.00 4.46
3070 3645 8.642432 CATAAGAGATAAATACACTGAGGGTCA 58.358 37.037 0.00 0.00 0.00 4.02
3071 3646 6.472686 AGAGATAAATACACTGAGGGTCAC 57.527 41.667 0.00 0.00 0.00 3.67
3072 3647 6.198639 AGAGATAAATACACTGAGGGTCACT 58.801 40.000 0.00 0.00 0.00 3.41
3073 3648 6.097554 AGAGATAAATACACTGAGGGTCACTG 59.902 42.308 0.00 0.00 0.00 3.66
3074 3649 5.958380 AGATAAATACACTGAGGGTCACTGA 59.042 40.000 0.00 0.00 0.00 3.41
3075 3650 4.974645 AAATACACTGAGGGTCACTGAA 57.025 40.909 0.00 0.00 0.00 3.02
3076 3651 4.543590 AATACACTGAGGGTCACTGAAG 57.456 45.455 0.00 0.00 0.00 3.02
3077 3652 1.794714 ACACTGAGGGTCACTGAAGT 58.205 50.000 0.00 0.00 0.00 3.01
3078 3653 2.119495 ACACTGAGGGTCACTGAAGTT 58.881 47.619 0.00 0.00 0.00 2.66
3079 3654 2.158900 ACACTGAGGGTCACTGAAGTTG 60.159 50.000 0.00 0.00 0.00 3.16
3080 3655 2.103094 CACTGAGGGTCACTGAAGTTGA 59.897 50.000 0.00 0.00 0.00 3.18
3081 3656 2.366916 ACTGAGGGTCACTGAAGTTGAG 59.633 50.000 0.00 0.00 0.00 3.02
3082 3657 2.366916 CTGAGGGTCACTGAAGTTGAGT 59.633 50.000 0.00 0.00 0.00 3.41
3083 3658 2.365617 TGAGGGTCACTGAAGTTGAGTC 59.634 50.000 0.00 0.00 0.00 3.36
3084 3659 2.365617 GAGGGTCACTGAAGTTGAGTCA 59.634 50.000 0.00 0.00 0.00 3.41
3085 3660 2.771943 AGGGTCACTGAAGTTGAGTCAA 59.228 45.455 0.08 0.08 0.00 3.18
3086 3661 3.199946 AGGGTCACTGAAGTTGAGTCAAA 59.800 43.478 7.25 0.00 0.00 2.69
3087 3662 3.945285 GGGTCACTGAAGTTGAGTCAAAA 59.055 43.478 7.25 0.00 0.00 2.44
3088 3663 4.035675 GGGTCACTGAAGTTGAGTCAAAAG 59.964 45.833 7.25 5.93 0.00 2.27
3089 3664 4.496507 GGTCACTGAAGTTGAGTCAAAAGC 60.497 45.833 7.25 0.29 0.00 3.51
3090 3665 4.094887 GTCACTGAAGTTGAGTCAAAAGCA 59.905 41.667 7.25 5.02 0.00 3.91
3091 3666 4.094887 TCACTGAAGTTGAGTCAAAAGCAC 59.905 41.667 7.25 0.00 0.00 4.40
3092 3667 4.009675 ACTGAAGTTGAGTCAAAAGCACA 58.990 39.130 7.25 3.67 0.00 4.57
3093 3668 4.458989 ACTGAAGTTGAGTCAAAAGCACAA 59.541 37.500 7.25 0.00 0.00 3.33
3094 3669 5.126061 ACTGAAGTTGAGTCAAAAGCACAAT 59.874 36.000 7.25 0.00 0.00 2.71
3095 3670 6.318648 ACTGAAGTTGAGTCAAAAGCACAATA 59.681 34.615 7.25 0.00 0.00 1.90
3096 3671 6.494842 TGAAGTTGAGTCAAAAGCACAATAC 58.505 36.000 7.25 0.00 0.00 1.89
3097 3672 5.095691 AGTTGAGTCAAAAGCACAATACG 57.904 39.130 7.25 0.00 0.00 3.06
3098 3673 4.024048 AGTTGAGTCAAAAGCACAATACGG 60.024 41.667 7.25 0.00 0.00 4.02
3099 3674 3.472652 TGAGTCAAAAGCACAATACGGT 58.527 40.909 0.00 0.00 0.00 4.83
3100 3675 3.496884 TGAGTCAAAAGCACAATACGGTC 59.503 43.478 0.00 0.00 0.00 4.79
3101 3676 3.472652 AGTCAAAAGCACAATACGGTCA 58.527 40.909 0.00 0.00 0.00 4.02
3102 3677 3.250040 AGTCAAAAGCACAATACGGTCAC 59.750 43.478 0.00 0.00 0.00 3.67
3103 3678 3.250040 GTCAAAAGCACAATACGGTCACT 59.750 43.478 0.00 0.00 0.00 3.41
3104 3679 3.249799 TCAAAAGCACAATACGGTCACTG 59.750 43.478 0.00 0.00 0.00 3.66
3105 3680 1.808411 AAGCACAATACGGTCACTGG 58.192 50.000 0.00 0.00 0.00 4.00
3106 3681 0.973632 AGCACAATACGGTCACTGGA 59.026 50.000 0.00 0.00 0.00 3.86
3107 3682 1.076332 GCACAATACGGTCACTGGAC 58.924 55.000 0.00 0.00 43.55 4.02
3108 3683 1.337823 GCACAATACGGTCACTGGACT 60.338 52.381 0.00 0.00 43.77 3.85
3109 3684 2.870435 GCACAATACGGTCACTGGACTT 60.870 50.000 0.00 0.00 43.77 3.01
3110 3685 3.615592 GCACAATACGGTCACTGGACTTA 60.616 47.826 0.00 0.00 43.77 2.24
3111 3686 4.562082 CACAATACGGTCACTGGACTTAA 58.438 43.478 0.00 0.00 43.77 1.85
3112 3687 4.625742 CACAATACGGTCACTGGACTTAAG 59.374 45.833 0.00 0.00 43.77 1.85
3113 3688 4.525487 ACAATACGGTCACTGGACTTAAGA 59.475 41.667 10.09 0.00 43.77 2.10
3114 3689 5.011329 ACAATACGGTCACTGGACTTAAGAA 59.989 40.000 10.09 0.00 43.77 2.52
3115 3690 5.934402 ATACGGTCACTGGACTTAAGAAT 57.066 39.130 10.09 0.00 43.77 2.40
3116 3691 7.093640 ACAATACGGTCACTGGACTTAAGAATA 60.094 37.037 10.09 0.00 43.77 1.75
3117 3692 5.069501 ACGGTCACTGGACTTAAGAATAC 57.930 43.478 10.09 0.00 43.77 1.89
3118 3693 4.103357 CGGTCACTGGACTTAAGAATACG 58.897 47.826 10.09 0.00 43.77 3.06
3119 3694 3.864003 GGTCACTGGACTTAAGAATACGC 59.136 47.826 10.09 0.00 43.77 4.42
3120 3695 4.381718 GGTCACTGGACTTAAGAATACGCT 60.382 45.833 10.09 0.00 43.77 5.07
3121 3696 4.799428 GTCACTGGACTTAAGAATACGCTC 59.201 45.833 10.09 0.00 40.99 5.03
3122 3697 3.791887 CACTGGACTTAAGAATACGCTCG 59.208 47.826 10.09 0.00 0.00 5.03
3123 3698 3.442977 ACTGGACTTAAGAATACGCTCGT 59.557 43.478 10.09 0.00 0.00 4.18
3124 3699 4.082354 ACTGGACTTAAGAATACGCTCGTT 60.082 41.667 10.09 0.00 0.00 3.85
3125 3700 5.124457 ACTGGACTTAAGAATACGCTCGTTA 59.876 40.000 10.09 0.00 0.00 3.18
3126 3701 5.335127 TGGACTTAAGAATACGCTCGTTAC 58.665 41.667 10.09 0.00 0.00 2.50
3127 3702 4.435877 GGACTTAAGAATACGCTCGTTACG 59.564 45.833 10.09 0.00 0.00 3.18
3128 3703 4.346129 ACTTAAGAATACGCTCGTTACGG 58.654 43.478 10.09 0.00 34.00 4.02
3129 3704 2.927553 AAGAATACGCTCGTTACGGT 57.072 45.000 4.53 0.00 34.00 4.83
3130 3705 2.465210 AGAATACGCTCGTTACGGTC 57.535 50.000 4.53 0.00 34.00 4.79
3131 3706 1.739466 AGAATACGCTCGTTACGGTCA 59.261 47.619 4.53 0.00 34.00 4.02
3132 3707 1.842546 GAATACGCTCGTTACGGTCAC 59.157 52.381 4.53 0.00 34.00 3.67
3133 3708 1.089920 ATACGCTCGTTACGGTCACT 58.910 50.000 4.53 0.00 34.00 3.41
3134 3709 1.720805 TACGCTCGTTACGGTCACTA 58.279 50.000 4.53 0.00 34.00 2.74
3135 3710 1.089920 ACGCTCGTTACGGTCACTAT 58.910 50.000 4.53 0.00 34.00 2.12
3136 3711 2.279741 ACGCTCGTTACGGTCACTATA 58.720 47.619 4.53 0.00 34.00 1.31
3137 3712 2.874701 ACGCTCGTTACGGTCACTATAT 59.125 45.455 4.53 0.00 34.00 0.86
3138 3713 4.058124 ACGCTCGTTACGGTCACTATATA 58.942 43.478 4.53 0.00 34.00 0.86
3139 3714 4.084328 ACGCTCGTTACGGTCACTATATAC 60.084 45.833 4.53 0.00 34.00 1.47
3140 3715 4.389645 GCTCGTTACGGTCACTATATACG 58.610 47.826 4.53 0.00 0.00 3.06
3141 3716 4.389645 CTCGTTACGGTCACTATATACGC 58.610 47.826 4.53 0.00 0.00 4.42
3142 3717 3.807071 TCGTTACGGTCACTATATACGCA 59.193 43.478 4.53 0.00 0.00 5.24
3143 3718 4.272261 TCGTTACGGTCACTATATACGCAA 59.728 41.667 4.53 0.00 0.00 4.85
3144 3719 4.969395 CGTTACGGTCACTATATACGCAAA 59.031 41.667 0.00 0.00 0.00 3.68
3145 3720 5.114572 CGTTACGGTCACTATATACGCAAAG 59.885 44.000 0.00 0.00 0.00 2.77
3146 3721 4.644103 ACGGTCACTATATACGCAAAGT 57.356 40.909 0.00 0.00 0.00 2.66
3147 3722 4.357142 ACGGTCACTATATACGCAAAGTG 58.643 43.478 0.00 0.00 40.54 3.16
3148 3723 4.096833 ACGGTCACTATATACGCAAAGTGA 59.903 41.667 0.10 0.10 44.47 3.41
3159 3734 6.706055 ATACGCAAAGTGATGATTATACGG 57.294 37.500 0.00 0.00 0.00 4.02
3160 3735 4.439057 ACGCAAAGTGATGATTATACGGT 58.561 39.130 0.00 0.00 0.00 4.83
3161 3736 4.506654 ACGCAAAGTGATGATTATACGGTC 59.493 41.667 0.00 0.00 0.00 4.79
3162 3737 4.506288 CGCAAAGTGATGATTATACGGTCA 59.494 41.667 0.00 0.00 0.00 4.02
3163 3738 5.556382 CGCAAAGTGATGATTATACGGTCAC 60.556 44.000 0.00 0.00 39.47 3.67
3165 3740 6.510157 GCAAAGTGATGATTATACGGTCACTG 60.510 42.308 7.04 0.00 46.24 3.66
3166 3741 4.621991 AGTGATGATTATACGGTCACTGC 58.378 43.478 5.61 0.00 45.49 4.40
3167 3742 4.342378 AGTGATGATTATACGGTCACTGCT 59.658 41.667 5.61 0.00 45.49 4.24
3168 3743 5.050490 GTGATGATTATACGGTCACTGCTT 58.950 41.667 0.00 0.00 36.98 3.91
3169 3744 5.175856 GTGATGATTATACGGTCACTGCTTC 59.824 44.000 0.00 0.00 36.98 3.86
3170 3745 4.729227 TGATTATACGGTCACTGCTTCA 57.271 40.909 0.00 0.00 0.00 3.02
3171 3746 4.682787 TGATTATACGGTCACTGCTTCAG 58.317 43.478 0.00 0.00 37.52 3.02
3172 3747 4.159693 TGATTATACGGTCACTGCTTCAGT 59.840 41.667 0.00 0.00 46.51 3.41
3182 3757 2.739885 CTGCTTCAGTGTAGAGCAGT 57.260 50.000 24.61 0.00 45.39 4.40
3184 3759 1.688735 TGCTTCAGTGTAGAGCAGTGT 59.311 47.619 12.34 0.00 46.08 3.55
3185 3760 2.890945 TGCTTCAGTGTAGAGCAGTGTA 59.109 45.455 12.34 0.00 46.08 2.90
3186 3761 3.511540 TGCTTCAGTGTAGAGCAGTGTAT 59.488 43.478 12.34 0.00 46.08 2.29
3187 3762 4.705023 TGCTTCAGTGTAGAGCAGTGTATA 59.295 41.667 12.34 0.00 46.08 1.47
3188 3763 5.163612 TGCTTCAGTGTAGAGCAGTGTATAG 60.164 44.000 12.34 1.54 46.08 1.31
3189 3764 4.902443 TCAGTGTAGAGCAGTGTATAGC 57.098 45.455 0.00 0.00 46.08 2.97
3190 3765 4.270008 TCAGTGTAGAGCAGTGTATAGCA 58.730 43.478 0.00 0.00 46.08 3.49
3191 3766 4.705023 TCAGTGTAGAGCAGTGTATAGCAA 59.295 41.667 0.00 0.00 46.08 3.91
3192 3767 5.360999 TCAGTGTAGAGCAGTGTATAGCAAT 59.639 40.000 0.00 0.00 46.08 3.56
3193 3768 5.689514 CAGTGTAGAGCAGTGTATAGCAATC 59.310 44.000 0.00 0.00 42.18 2.67
3194 3769 5.596361 AGTGTAGAGCAGTGTATAGCAATCT 59.404 40.000 0.00 0.00 0.00 2.40
3195 3770 5.689514 GTGTAGAGCAGTGTATAGCAATCTG 59.310 44.000 0.00 0.00 0.00 2.90
3196 3771 5.360999 TGTAGAGCAGTGTATAGCAATCTGT 59.639 40.000 0.00 0.00 0.00 3.41
3197 3772 5.350504 AGAGCAGTGTATAGCAATCTGTT 57.649 39.130 0.00 0.00 0.00 3.16
3198 3773 5.114780 AGAGCAGTGTATAGCAATCTGTTG 58.885 41.667 0.00 0.00 38.39 3.33
3199 3774 5.089970 AGCAGTGTATAGCAATCTGTTGA 57.910 39.130 0.00 0.00 37.53 3.18
3200 3775 4.872691 AGCAGTGTATAGCAATCTGTTGAC 59.127 41.667 0.00 0.00 37.53 3.18
3201 3776 4.034510 GCAGTGTATAGCAATCTGTTGACC 59.965 45.833 0.00 0.00 37.53 4.02
3202 3777 4.268644 CAGTGTATAGCAATCTGTTGACCG 59.731 45.833 0.00 0.00 37.53 4.79
3203 3778 3.555956 GTGTATAGCAATCTGTTGACCGG 59.444 47.826 0.00 0.00 37.53 5.28
3204 3779 3.196901 TGTATAGCAATCTGTTGACCGGT 59.803 43.478 6.92 6.92 37.53 5.28
3205 3780 2.380084 TAGCAATCTGTTGACCGGTC 57.620 50.000 28.17 28.17 37.53 4.79
3206 3781 0.396435 AGCAATCTGTTGACCGGTCA 59.604 50.000 33.23 33.23 37.53 4.02
3207 3782 1.202758 AGCAATCTGTTGACCGGTCAA 60.203 47.619 39.59 39.59 46.27 3.18
3217 3792 4.545208 TTGACCGGTCAAATGATCTACA 57.455 40.909 40.69 19.54 45.56 2.74
3218 3793 4.753516 TGACCGGTCAAATGATCTACAT 57.246 40.909 34.60 0.00 36.53 2.29
3219 3794 4.441792 TGACCGGTCAAATGATCTACATG 58.558 43.478 34.60 0.00 35.79 3.21
3220 3795 4.161377 TGACCGGTCAAATGATCTACATGA 59.839 41.667 34.60 5.35 35.79 3.07
3221 3796 4.442706 ACCGGTCAAATGATCTACATGAC 58.557 43.478 0.00 10.87 39.39 3.06
3222 3797 4.081142 ACCGGTCAAATGATCTACATGACA 60.081 41.667 0.00 0.00 39.12 3.58
3223 3798 5.059161 CCGGTCAAATGATCTACATGACAT 58.941 41.667 17.19 0.00 39.12 3.06
3224 3799 5.528690 CCGGTCAAATGATCTACATGACATT 59.471 40.000 17.19 0.82 39.12 2.71
3225 3800 6.293081 CCGGTCAAATGATCTACATGACATTC 60.293 42.308 17.19 0.00 39.12 2.67
3226 3801 6.258507 CGGTCAAATGATCTACATGACATTCA 59.741 38.462 17.19 0.00 39.12 2.57
3227 3802 7.201635 CGGTCAAATGATCTACATGACATTCAA 60.202 37.037 17.19 0.00 39.12 2.69
3228 3803 8.627403 GGTCAAATGATCTACATGACATTCAAT 58.373 33.333 17.19 0.00 39.12 2.57
3233 3808 8.975663 ATGATCTACATGACATTCAATTGACT 57.024 30.769 7.89 0.00 37.87 3.41
3234 3809 8.797350 TGATCTACATGACATTCAATTGACTT 57.203 30.769 7.89 0.00 0.00 3.01
3235 3810 9.889128 TGATCTACATGACATTCAATTGACTTA 57.111 29.630 7.89 0.00 0.00 2.24
3237 3812 8.722480 TCTACATGACATTCAATTGACTTAGG 57.278 34.615 7.89 0.00 0.00 2.69
3238 3813 6.199937 ACATGACATTCAATTGACTTAGGC 57.800 37.500 7.89 1.11 0.00 3.93
3239 3814 5.126061 ACATGACATTCAATTGACTTAGGCC 59.874 40.000 7.89 0.00 0.00 5.19
3240 3815 4.016444 TGACATTCAATTGACTTAGGCCC 58.984 43.478 7.89 0.00 0.00 5.80
3241 3816 4.016444 GACATTCAATTGACTTAGGCCCA 58.984 43.478 7.89 0.00 0.00 5.36
3242 3817 4.613437 ACATTCAATTGACTTAGGCCCAT 58.387 39.130 7.89 0.00 0.00 4.00
3243 3818 4.646492 ACATTCAATTGACTTAGGCCCATC 59.354 41.667 7.89 0.00 0.00 3.51
3244 3819 4.314522 TTCAATTGACTTAGGCCCATCA 57.685 40.909 7.89 0.00 0.00 3.07
3245 3820 3.889815 TCAATTGACTTAGGCCCATCAG 58.110 45.455 3.38 0.00 0.00 2.90
3246 3821 3.266772 TCAATTGACTTAGGCCCATCAGT 59.733 43.478 3.38 0.00 0.00 3.41
3247 3822 3.567478 ATTGACTTAGGCCCATCAGTC 57.433 47.619 0.00 6.70 36.89 3.51
3248 3823 1.951209 TGACTTAGGCCCATCAGTCA 58.049 50.000 16.23 16.23 42.66 3.41
3249 3824 1.833630 TGACTTAGGCCCATCAGTCAG 59.166 52.381 16.23 0.00 40.56 3.51
3250 3825 1.834263 GACTTAGGCCCATCAGTCAGT 59.166 52.381 13.70 0.00 36.46 3.41
3251 3826 3.031736 GACTTAGGCCCATCAGTCAGTA 58.968 50.000 13.70 0.00 36.46 2.74
3252 3827 3.034635 ACTTAGGCCCATCAGTCAGTAG 58.965 50.000 0.00 0.00 0.00 2.57
3253 3828 2.088104 TAGGCCCATCAGTCAGTAGG 57.912 55.000 0.00 0.00 0.00 3.18
3254 3829 0.692419 AGGCCCATCAGTCAGTAGGG 60.692 60.000 0.00 0.00 42.55 3.53
3255 3830 1.700042 GGCCCATCAGTCAGTAGGGG 61.700 65.000 0.00 0.00 39.96 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.295214 CACAAGTTTTGTTTGGTTTTTCTTTTT 57.705 25.926 0.00 0.00 43.23 1.94
13 14 7.918033 CCACAAGTTTTGTTTGGTTTTTCTTTT 59.082 29.630 0.00 0.00 43.23 2.27
14 15 7.283354 TCCACAAGTTTTGTTTGGTTTTTCTTT 59.717 29.630 0.00 0.00 43.23 2.52
15 16 6.768381 TCCACAAGTTTTGTTTGGTTTTTCTT 59.232 30.769 0.00 0.00 43.23 2.52
16 17 6.292150 TCCACAAGTTTTGTTTGGTTTTTCT 58.708 32.000 0.00 0.00 43.23 2.52
17 18 6.546972 TCCACAAGTTTTGTTTGGTTTTTC 57.453 33.333 0.00 0.00 43.23 2.29
18 19 6.944234 TTCCACAAGTTTTGTTTGGTTTTT 57.056 29.167 0.00 0.00 43.23 1.94
19 20 6.944234 TTTCCACAAGTTTTGTTTGGTTTT 57.056 29.167 0.00 0.00 43.23 2.43
20 21 6.944234 TTTTCCACAAGTTTTGTTTGGTTT 57.056 29.167 0.00 0.00 43.23 3.27
21 22 8.800370 ATATTTTCCACAAGTTTTGTTTGGTT 57.200 26.923 0.00 0.00 43.23 3.67
35 36 9.878667 TGTCTTCTTCGTTATATATTTTCCACA 57.121 29.630 0.00 0.00 0.00 4.17
109 110 9.588096 AAAGGACTAAACCAAATCAAGAATACT 57.412 29.630 0.00 0.00 0.00 2.12
119 120 7.398829 ACCAAACAAAAAGGACTAAACCAAAT 58.601 30.769 0.00 0.00 0.00 2.32
175 176 6.183360 CCATAAAAGGCCCATCAACATACAAT 60.183 38.462 0.00 0.00 0.00 2.71
375 376 1.797635 GCCTATGAAGCTCATTCGCTC 59.202 52.381 4.35 0.00 41.14 5.03
388 389 4.161565 ACACTCGTTTTATCAGGCCTATGA 59.838 41.667 3.98 0.00 0.00 2.15
389 390 4.442706 ACACTCGTTTTATCAGGCCTATG 58.557 43.478 3.98 0.00 0.00 2.23
390 391 4.755266 ACACTCGTTTTATCAGGCCTAT 57.245 40.909 3.98 2.13 0.00 2.57
391 392 4.020928 TCAACACTCGTTTTATCAGGCCTA 60.021 41.667 3.98 0.00 31.13 3.93
393 394 3.071479 TCAACACTCGTTTTATCAGGCC 58.929 45.455 0.00 0.00 31.13 5.19
395 396 7.974675 ACATAATCAACACTCGTTTTATCAGG 58.025 34.615 0.00 0.00 31.13 3.86
442 556 1.068895 CCAACACATTGAAGCCTGCAA 59.931 47.619 0.00 0.00 38.15 4.08
579 702 9.014297 CCACTGATTCCATTTAAGTATAATCCC 57.986 37.037 0.00 0.00 0.00 3.85
615 739 3.442273 GTGTCCATATTTTCTTTGCCGGA 59.558 43.478 5.05 0.00 0.00 5.14
633 757 5.862924 ATATGTTGCAATATAGCCGTGTC 57.137 39.130 18.99 0.00 0.00 3.67
689 813 2.144482 AGAACATGCTGCAACAAAGC 57.856 45.000 6.36 0.00 41.22 3.51
690 814 3.708890 TGAAGAACATGCTGCAACAAAG 58.291 40.909 6.36 0.00 0.00 2.77
794 925 9.853177 TCTTCTTCTTGGTTTCTTCTCTTTTAT 57.147 29.630 0.00 0.00 0.00 1.40
809 940 2.816672 GCTTTCTGGGTCTTCTTCTTGG 59.183 50.000 0.00 0.00 0.00 3.61
823 954 2.076863 CTGTTTAGGGTCGGCTTTCTG 58.923 52.381 0.00 0.00 0.00 3.02
844 976 2.974698 GGATGGGCTCGCATTCGG 60.975 66.667 0.96 0.00 36.13 4.30
903 1035 9.361315 GGCTGTTATTTCGTTGGTATTTATTTT 57.639 29.630 0.00 0.00 0.00 1.82
904 1036 8.524487 TGGCTGTTATTTCGTTGGTATTTATTT 58.476 29.630 0.00 0.00 0.00 1.40
906 1038 7.633193 TGGCTGTTATTTCGTTGGTATTTAT 57.367 32.000 0.00 0.00 0.00 1.40
907 1039 7.466185 CGATGGCTGTTATTTCGTTGGTATTTA 60.466 37.037 0.00 0.00 0.00 1.40
908 1040 5.968528 TGGCTGTTATTTCGTTGGTATTT 57.031 34.783 0.00 0.00 0.00 1.40
909 1041 5.220777 CGATGGCTGTTATTTCGTTGGTATT 60.221 40.000 0.00 0.00 0.00 1.89
910 1042 4.272504 CGATGGCTGTTATTTCGTTGGTAT 59.727 41.667 0.00 0.00 0.00 2.73
911 1043 3.619483 CGATGGCTGTTATTTCGTTGGTA 59.381 43.478 0.00 0.00 0.00 3.25
912 1044 2.418628 CGATGGCTGTTATTTCGTTGGT 59.581 45.455 0.00 0.00 0.00 3.67
913 1045 2.223249 CCGATGGCTGTTATTTCGTTGG 60.223 50.000 0.00 0.00 0.00 3.77
915 1047 1.400494 GCCGATGGCTGTTATTTCGTT 59.600 47.619 0.00 0.00 46.69 3.85
917 1049 3.825812 GCCGATGGCTGTTATTTCG 57.174 52.632 0.00 0.00 46.69 3.46
933 1068 1.737793 CGATCTTTTGTAGTGTGGGCC 59.262 52.381 0.00 0.00 0.00 5.80
940 1075 5.282510 CGGCTTAGATCGATCTTTTGTAGT 58.717 41.667 31.55 8.90 38.32 2.73
944 1079 3.246226 CACCGGCTTAGATCGATCTTTTG 59.754 47.826 31.55 21.24 38.32 2.44
948 1083 0.315568 GCACCGGCTTAGATCGATCT 59.684 55.000 29.58 29.58 37.74 2.75
1041 1176 7.228706 GCCTTTCTTTTCTTGGAATATCGGATA 59.771 37.037 0.00 0.00 0.00 2.59
1131 1272 1.229082 TTGGTCTAGCCGGTGGAGT 60.229 57.895 1.90 0.00 41.21 3.85
1143 1284 2.284258 AGGAGCTCGGCTTGGTCT 60.284 61.111 7.83 0.00 39.88 3.85
1290 1431 2.359850 TTGCGCACCATGGTCTCC 60.360 61.111 16.53 6.32 0.00 3.71
1367 1508 2.394563 GCAAGAAGGAGGAGCGTGC 61.395 63.158 0.00 0.00 0.00 5.34
1380 1521 2.437085 TCTCATACCTCTCGGCAAGA 57.563 50.000 0.00 0.00 0.00 3.02
1383 1524 5.808366 ATTAAATCTCATACCTCTCGGCA 57.192 39.130 0.00 0.00 0.00 5.69
1405 1546 5.417580 CGTTTGGGGATCAGGAAAGAAATAA 59.582 40.000 0.00 0.00 0.00 1.40
1425 1654 2.218603 CCCATAAGATAAGCGCCGTTT 58.781 47.619 2.29 0.00 0.00 3.60
1429 1658 1.880027 CAACCCCATAAGATAAGCGCC 59.120 52.381 2.29 0.00 0.00 6.53
1430 1659 1.266989 GCAACCCCATAAGATAAGCGC 59.733 52.381 0.00 0.00 0.00 5.92
1431 1660 1.880027 GGCAACCCCATAAGATAAGCG 59.120 52.381 0.00 0.00 0.00 4.68
1455 1687 4.394920 TCGGAGCACAATAAGAAATGGAAC 59.605 41.667 0.00 0.00 0.00 3.62
1459 1724 3.544834 CGCTCGGAGCACAATAAGAAATG 60.545 47.826 27.83 4.71 42.58 2.32
1464 1729 0.647410 CACGCTCGGAGCACAATAAG 59.353 55.000 27.83 13.08 42.58 1.73
1468 1733 4.299547 AGCACGCTCGGAGCACAA 62.300 61.111 27.83 0.00 42.58 3.33
1477 1742 2.875080 AATAAACAACGAGCACGCTC 57.125 45.000 9.04 9.04 43.96 5.03
1478 1743 2.546368 TCAAATAAACAACGAGCACGCT 59.454 40.909 2.62 0.00 43.96 5.07
1479 1744 2.911120 TCAAATAAACAACGAGCACGC 58.089 42.857 2.62 0.00 43.96 5.34
1480 1745 3.906008 CCTTCAAATAAACAACGAGCACG 59.094 43.478 0.76 0.76 45.75 5.34
1514 1785 8.773645 CAAAGAAAAATATTTTTGGTGAGGTCC 58.226 33.333 26.69 11.57 40.21 4.46
1528 1806 9.941664 CGTAGCATCTCATTCAAAGAAAAATAT 57.058 29.630 0.00 0.00 0.00 1.28
1553 1834 3.055591 AGTTATGAGCGATGAATGAGCG 58.944 45.455 0.00 0.00 36.22 5.03
1585 2008 6.294787 GCTGCAAGGTAGCATTAGATAGAGTA 60.295 42.308 1.34 0.00 44.68 2.59
1586 2009 5.510520 GCTGCAAGGTAGCATTAGATAGAGT 60.511 44.000 1.34 0.00 44.68 3.24
1587 2010 4.928615 GCTGCAAGGTAGCATTAGATAGAG 59.071 45.833 1.34 0.00 44.68 2.43
1588 2011 4.559502 CGCTGCAAGGTAGCATTAGATAGA 60.560 45.833 7.08 0.00 44.68 1.98
1589 2012 3.677121 CGCTGCAAGGTAGCATTAGATAG 59.323 47.826 7.08 0.00 44.68 2.08
1610 2033 2.507992 CTCTTCAGCGAGGGTGCG 60.508 66.667 0.00 0.00 40.67 5.34
1643 2066 2.028112 TGCTTGTTTAGAGACCGAGCAT 60.028 45.455 0.00 0.00 34.72 3.79
1649 2072 4.503741 TGCAAATGCTTGTTTAGAGACC 57.496 40.909 6.97 0.00 42.66 3.85
1655 2078 2.799412 CGCCTTTGCAAATGCTTGTTTA 59.201 40.909 28.85 0.00 42.66 2.01
1658 2081 0.388659 TCGCCTTTGCAAATGCTTGT 59.611 45.000 28.85 0.00 42.66 3.16
1663 2094 3.220507 TCTTGATCGCCTTTGCAAATG 57.779 42.857 13.23 11.34 37.32 2.32
1721 2152 9.113838 ACCATCTCTTGTGTATCAAAATATGAC 57.886 33.333 0.00 0.00 41.93 3.06
1764 2195 1.028330 TGCTTCAGCTGTAGGCATGC 61.028 55.000 20.39 9.90 44.79 4.06
1950 2381 2.747822 GGCTGCACTCTCGCATGTG 61.748 63.158 0.50 0.00 42.06 3.21
1991 2422 2.755650 AGCTTCACTTGTAGGTTGTCG 58.244 47.619 0.00 0.00 0.00 4.35
2100 2531 2.189499 GCCAATCACCTCCGCCATC 61.189 63.158 0.00 0.00 0.00 3.51
2102 2533 2.424842 AAAGCCAATCACCTCCGCCA 62.425 55.000 0.00 0.00 0.00 5.69
2103 2534 1.657751 GAAAGCCAATCACCTCCGCC 61.658 60.000 0.00 0.00 0.00 6.13
2201 2644 5.529430 GTCGAGGATCTTCTCATACTCTTCA 59.471 44.000 3.09 0.00 32.06 3.02
2222 2665 1.520174 CTACGCATGCTCTTGATGTCG 59.480 52.381 17.13 0.00 0.00 4.35
2244 2687 5.961395 ACGTTATTTCATTAGCGTAGGTG 57.039 39.130 0.00 0.00 37.27 4.00
2264 2712 5.088739 GGATGCTTTCAAGAAACACATACG 58.911 41.667 6.39 0.00 0.00 3.06
2333 2808 9.764363 TGTACAATTAGTAATGCAGGAATCTAG 57.236 33.333 0.00 0.00 33.72 2.43
2479 2959 9.539825 GCTAGGAACAATATATAGGATGTGATG 57.460 37.037 0.00 0.00 0.00 3.07
2489 2977 7.962441 TCTGCTTGTGCTAGGAACAATATATA 58.038 34.615 0.00 0.00 36.95 0.86
2490 2978 6.830912 TCTGCTTGTGCTAGGAACAATATAT 58.169 36.000 0.00 0.00 36.95 0.86
2491 2979 6.233905 TCTGCTTGTGCTAGGAACAATATA 57.766 37.500 0.00 0.00 36.95 0.86
2492 2980 5.102953 TCTGCTTGTGCTAGGAACAATAT 57.897 39.130 0.00 0.00 36.95 1.28
2587 3075 3.684788 AGTACGATTCAACATCTTGTGCC 59.315 43.478 0.00 0.00 0.00 5.01
2650 3142 2.178912 TAACCTGCAAGTTTCCTCCG 57.821 50.000 5.92 0.00 0.00 4.63
2663 3155 3.693085 TCGTCCACTAGCTAGTTAACCTG 59.307 47.826 23.94 11.34 33.46 4.00
2664 3156 3.946558 CTCGTCCACTAGCTAGTTAACCT 59.053 47.826 23.94 0.00 33.46 3.50
2704 3271 3.120649 AGCAATTTTGTAAGTCGTCGCTC 60.121 43.478 0.00 0.00 0.00 5.03
2904 3479 3.463533 TTATCAATGGCGAACAACACG 57.536 42.857 0.00 0.00 0.00 4.49
2951 3526 3.979101 TTCAAAATCCATCCAAAGCCC 57.021 42.857 0.00 0.00 0.00 5.19
3049 3624 6.096987 TCAGTGACCCTCAGTGTATTTATCTC 59.903 42.308 6.90 0.00 45.55 2.75
3050 3625 5.958380 TCAGTGACCCTCAGTGTATTTATCT 59.042 40.000 6.90 0.00 45.55 1.98
3051 3626 6.222038 TCAGTGACCCTCAGTGTATTTATC 57.778 41.667 6.90 0.00 45.55 1.75
3052 3627 6.213600 ACTTCAGTGACCCTCAGTGTATTTAT 59.786 38.462 6.90 0.00 45.55 1.40
3053 3628 5.542635 ACTTCAGTGACCCTCAGTGTATTTA 59.457 40.000 6.90 0.00 45.55 1.40
3054 3629 4.348168 ACTTCAGTGACCCTCAGTGTATTT 59.652 41.667 6.90 0.00 45.55 1.40
3055 3630 3.904339 ACTTCAGTGACCCTCAGTGTATT 59.096 43.478 6.90 0.00 45.55 1.89
3056 3631 3.511477 ACTTCAGTGACCCTCAGTGTAT 58.489 45.455 6.90 0.00 45.55 2.29
3057 3632 2.958818 ACTTCAGTGACCCTCAGTGTA 58.041 47.619 6.90 0.00 45.55 2.90
3058 3633 1.794714 ACTTCAGTGACCCTCAGTGT 58.205 50.000 6.90 0.00 45.55 3.55
3059 3634 2.103094 TCAACTTCAGTGACCCTCAGTG 59.897 50.000 0.00 1.23 46.46 3.66
3060 3635 2.366916 CTCAACTTCAGTGACCCTCAGT 59.633 50.000 0.00 0.00 0.00 3.41
3061 3636 2.366916 ACTCAACTTCAGTGACCCTCAG 59.633 50.000 0.00 0.00 0.00 3.35
3062 3637 2.365617 GACTCAACTTCAGTGACCCTCA 59.634 50.000 0.00 0.00 0.00 3.86
3063 3638 2.365617 TGACTCAACTTCAGTGACCCTC 59.634 50.000 0.00 0.00 0.00 4.30
3064 3639 2.398588 TGACTCAACTTCAGTGACCCT 58.601 47.619 0.00 0.00 0.00 4.34
3065 3640 2.910688 TGACTCAACTTCAGTGACCC 57.089 50.000 0.00 0.00 0.00 4.46
3066 3641 4.496507 GCTTTTGACTCAACTTCAGTGACC 60.497 45.833 0.00 0.00 0.00 4.02
3067 3642 4.094887 TGCTTTTGACTCAACTTCAGTGAC 59.905 41.667 0.00 0.00 0.00 3.67
3068 3643 4.094887 GTGCTTTTGACTCAACTTCAGTGA 59.905 41.667 0.00 0.00 0.00 3.41
3069 3644 4.142622 TGTGCTTTTGACTCAACTTCAGTG 60.143 41.667 0.00 0.00 0.00 3.66
3070 3645 4.009675 TGTGCTTTTGACTCAACTTCAGT 58.990 39.130 0.00 0.00 0.00 3.41
3071 3646 4.621068 TGTGCTTTTGACTCAACTTCAG 57.379 40.909 0.00 0.00 0.00 3.02
3072 3647 5.581126 ATTGTGCTTTTGACTCAACTTCA 57.419 34.783 0.00 0.00 0.00 3.02
3073 3648 5.621228 CGTATTGTGCTTTTGACTCAACTTC 59.379 40.000 0.00 0.00 0.00 3.01
3074 3649 5.505654 CCGTATTGTGCTTTTGACTCAACTT 60.506 40.000 0.00 0.00 0.00 2.66
3075 3650 4.024048 CCGTATTGTGCTTTTGACTCAACT 60.024 41.667 0.00 0.00 0.00 3.16
3076 3651 4.219033 CCGTATTGTGCTTTTGACTCAAC 58.781 43.478 0.00 0.00 0.00 3.18
3077 3652 3.880490 ACCGTATTGTGCTTTTGACTCAA 59.120 39.130 0.00 0.00 0.00 3.02
3078 3653 3.472652 ACCGTATTGTGCTTTTGACTCA 58.527 40.909 0.00 0.00 0.00 3.41
3079 3654 3.496884 TGACCGTATTGTGCTTTTGACTC 59.503 43.478 0.00 0.00 0.00 3.36
3080 3655 3.250040 GTGACCGTATTGTGCTTTTGACT 59.750 43.478 0.00 0.00 0.00 3.41
3081 3656 3.250040 AGTGACCGTATTGTGCTTTTGAC 59.750 43.478 0.00 0.00 0.00 3.18
3082 3657 3.249799 CAGTGACCGTATTGTGCTTTTGA 59.750 43.478 0.00 0.00 0.00 2.69
3083 3658 3.554524 CAGTGACCGTATTGTGCTTTTG 58.445 45.455 0.00 0.00 0.00 2.44
3084 3659 2.552315 CCAGTGACCGTATTGTGCTTTT 59.448 45.455 0.00 0.00 0.00 2.27
3085 3660 2.151202 CCAGTGACCGTATTGTGCTTT 58.849 47.619 0.00 0.00 0.00 3.51
3086 3661 1.346395 TCCAGTGACCGTATTGTGCTT 59.654 47.619 0.00 0.00 0.00 3.91
3087 3662 0.973632 TCCAGTGACCGTATTGTGCT 59.026 50.000 0.00 0.00 0.00 4.40
3088 3663 1.076332 GTCCAGTGACCGTATTGTGC 58.924 55.000 0.00 0.00 35.34 4.57
3089 3664 2.743636 AGTCCAGTGACCGTATTGTG 57.256 50.000 0.00 0.00 42.81 3.33
3090 3665 4.525487 TCTTAAGTCCAGTGACCGTATTGT 59.475 41.667 1.63 0.00 42.81 2.71
3091 3666 5.068234 TCTTAAGTCCAGTGACCGTATTG 57.932 43.478 1.63 0.00 42.81 1.90
3092 3667 5.733620 TTCTTAAGTCCAGTGACCGTATT 57.266 39.130 1.63 0.00 42.81 1.89
3093 3668 5.934402 ATTCTTAAGTCCAGTGACCGTAT 57.066 39.130 1.63 0.00 42.81 3.06
3094 3669 5.163723 CGTATTCTTAAGTCCAGTGACCGTA 60.164 44.000 1.63 0.00 42.81 4.02
3095 3670 4.380233 CGTATTCTTAAGTCCAGTGACCGT 60.380 45.833 1.63 0.00 42.81 4.83
3096 3671 4.103357 CGTATTCTTAAGTCCAGTGACCG 58.897 47.826 1.63 0.00 42.81 4.79
3097 3672 3.864003 GCGTATTCTTAAGTCCAGTGACC 59.136 47.826 1.63 0.00 42.81 4.02
3098 3673 4.745649 AGCGTATTCTTAAGTCCAGTGAC 58.254 43.478 1.63 0.00 42.09 3.67
3099 3674 4.438336 CGAGCGTATTCTTAAGTCCAGTGA 60.438 45.833 1.63 0.00 0.00 3.41
3100 3675 3.791887 CGAGCGTATTCTTAAGTCCAGTG 59.208 47.826 1.63 0.00 0.00 3.66
3101 3676 3.442977 ACGAGCGTATTCTTAAGTCCAGT 59.557 43.478 1.63 0.00 0.00 4.00
3102 3677 4.030134 ACGAGCGTATTCTTAAGTCCAG 57.970 45.455 1.63 0.00 0.00 3.86
3103 3678 4.445452 AACGAGCGTATTCTTAAGTCCA 57.555 40.909 1.63 0.00 0.00 4.02
3104 3679 4.435877 CGTAACGAGCGTATTCTTAAGTCC 59.564 45.833 1.63 0.00 0.00 3.85
3105 3680 4.435877 CCGTAACGAGCGTATTCTTAAGTC 59.564 45.833 1.63 0.00 0.00 3.01
3106 3681 4.142600 ACCGTAACGAGCGTATTCTTAAGT 60.143 41.667 1.63 0.00 0.00 2.24
3107 3682 4.346129 ACCGTAACGAGCGTATTCTTAAG 58.654 43.478 0.00 0.00 0.00 1.85
3108 3683 4.142708 TGACCGTAACGAGCGTATTCTTAA 60.143 41.667 0.00 0.00 0.00 1.85
3109 3684 3.373748 TGACCGTAACGAGCGTATTCTTA 59.626 43.478 0.00 0.00 0.00 2.10
3110 3685 2.162208 TGACCGTAACGAGCGTATTCTT 59.838 45.455 0.00 0.00 0.00 2.52
3111 3686 1.739466 TGACCGTAACGAGCGTATTCT 59.261 47.619 0.00 0.00 0.00 2.40
3112 3687 1.842546 GTGACCGTAACGAGCGTATTC 59.157 52.381 0.00 0.00 0.00 1.75
3113 3688 1.470098 AGTGACCGTAACGAGCGTATT 59.530 47.619 0.00 0.00 0.00 1.89
3114 3689 1.089920 AGTGACCGTAACGAGCGTAT 58.910 50.000 0.00 0.00 0.00 3.06
3115 3690 1.720805 TAGTGACCGTAACGAGCGTA 58.279 50.000 0.00 0.00 0.00 4.42
3116 3691 1.089920 ATAGTGACCGTAACGAGCGT 58.910 50.000 0.00 0.00 0.00 5.07
3117 3692 3.532892 ATATAGTGACCGTAACGAGCG 57.467 47.619 0.00 0.00 0.00 5.03
3118 3693 4.389645 CGTATATAGTGACCGTAACGAGC 58.610 47.826 0.00 0.00 0.00 5.03
3119 3694 4.084380 TGCGTATATAGTGACCGTAACGAG 60.084 45.833 0.00 0.00 0.00 4.18
3120 3695 3.807071 TGCGTATATAGTGACCGTAACGA 59.193 43.478 0.00 0.00 0.00 3.85
3121 3696 4.132529 TGCGTATATAGTGACCGTAACG 57.867 45.455 0.00 0.00 0.00 3.18
3122 3697 5.973565 ACTTTGCGTATATAGTGACCGTAAC 59.026 40.000 0.00 0.00 0.00 2.50
3123 3698 5.972973 CACTTTGCGTATATAGTGACCGTAA 59.027 40.000 0.00 0.00 40.24 3.18
3124 3699 5.296531 TCACTTTGCGTATATAGTGACCGTA 59.703 40.000 8.73 0.00 41.34 4.02
3125 3700 4.096833 TCACTTTGCGTATATAGTGACCGT 59.903 41.667 8.73 0.00 41.34 4.83
3126 3701 4.603985 TCACTTTGCGTATATAGTGACCG 58.396 43.478 8.73 0.00 41.34 4.79
3127 3702 6.213677 TCATCACTTTGCGTATATAGTGACC 58.786 40.000 13.09 0.00 46.76 4.02
3128 3703 7.875316 ATCATCACTTTGCGTATATAGTGAC 57.125 36.000 13.09 0.00 46.76 3.67
3133 3708 9.511144 CCGTATAATCATCACTTTGCGTATATA 57.489 33.333 0.00 0.00 0.00 0.86
3134 3709 8.033038 ACCGTATAATCATCACTTTGCGTATAT 58.967 33.333 0.00 0.00 0.00 0.86
3135 3710 7.372714 ACCGTATAATCATCACTTTGCGTATA 58.627 34.615 0.00 0.00 0.00 1.47
3136 3711 6.220930 ACCGTATAATCATCACTTTGCGTAT 58.779 36.000 0.00 0.00 0.00 3.06
3137 3712 5.593968 ACCGTATAATCATCACTTTGCGTA 58.406 37.500 0.00 0.00 0.00 4.42
3138 3713 4.439057 ACCGTATAATCATCACTTTGCGT 58.561 39.130 0.00 0.00 0.00 5.24
3139 3714 4.506288 TGACCGTATAATCATCACTTTGCG 59.494 41.667 0.00 0.00 0.00 4.85
3140 3715 5.523916 AGTGACCGTATAATCATCACTTTGC 59.476 40.000 0.00 0.00 45.98 3.68
3141 3716 6.510157 GCAGTGACCGTATAATCATCACTTTG 60.510 42.308 2.53 0.00 45.98 2.77
3142 3717 5.523916 GCAGTGACCGTATAATCATCACTTT 59.476 40.000 2.53 0.00 45.98 2.66
3143 3718 5.050490 GCAGTGACCGTATAATCATCACTT 58.950 41.667 2.53 0.00 45.98 3.16
3145 3720 4.621991 AGCAGTGACCGTATAATCATCAC 58.378 43.478 0.00 0.00 39.99 3.06
3146 3721 4.937201 AGCAGTGACCGTATAATCATCA 57.063 40.909 0.00 0.00 0.00 3.07
3147 3722 5.289595 TGAAGCAGTGACCGTATAATCATC 58.710 41.667 0.00 0.00 0.00 2.92
3148 3723 5.163405 ACTGAAGCAGTGACCGTATAATCAT 60.163 40.000 0.00 0.00 43.63 2.45
3149 3724 4.159693 ACTGAAGCAGTGACCGTATAATCA 59.840 41.667 0.00 0.00 43.63 2.57
3150 3725 4.683832 ACTGAAGCAGTGACCGTATAATC 58.316 43.478 0.00 0.00 43.63 1.75
3151 3726 4.737855 ACTGAAGCAGTGACCGTATAAT 57.262 40.909 0.00 0.00 43.63 1.28
3162 3737 2.739885 CTGCTCTACACTGAAGCAGT 57.260 50.000 13.91 0.00 46.51 4.40
3164 3739 1.688735 ACACTGCTCTACACTGAAGCA 59.311 47.619 0.00 0.00 0.00 3.91
3165 3740 2.447244 ACACTGCTCTACACTGAAGC 57.553 50.000 0.00 0.00 0.00 3.86
3166 3741 5.163612 TGCTATACACTGCTCTACACTGAAG 60.164 44.000 0.00 0.00 0.00 3.02
3167 3742 4.705023 TGCTATACACTGCTCTACACTGAA 59.295 41.667 0.00 0.00 0.00 3.02
3168 3743 4.270008 TGCTATACACTGCTCTACACTGA 58.730 43.478 0.00 0.00 0.00 3.41
3169 3744 4.639135 TGCTATACACTGCTCTACACTG 57.361 45.455 0.00 0.00 0.00 3.66
3170 3745 5.596361 AGATTGCTATACACTGCTCTACACT 59.404 40.000 0.00 0.00 0.00 3.55
3171 3746 5.689514 CAGATTGCTATACACTGCTCTACAC 59.310 44.000 0.00 0.00 0.00 2.90
3172 3747 5.360999 ACAGATTGCTATACACTGCTCTACA 59.639 40.000 0.00 0.00 32.67 2.74
3173 3748 5.837437 ACAGATTGCTATACACTGCTCTAC 58.163 41.667 0.00 0.00 32.67 2.59
3174 3749 6.096846 TCAACAGATTGCTATACACTGCTCTA 59.903 38.462 0.00 0.00 35.63 2.43
3175 3750 5.105187 TCAACAGATTGCTATACACTGCTCT 60.105 40.000 0.00 0.00 35.63 4.09
3176 3751 5.006165 GTCAACAGATTGCTATACACTGCTC 59.994 44.000 0.00 0.00 35.63 4.26
3177 3752 4.872691 GTCAACAGATTGCTATACACTGCT 59.127 41.667 0.00 0.00 35.63 4.24
3178 3753 4.034510 GGTCAACAGATTGCTATACACTGC 59.965 45.833 0.00 0.00 35.63 4.40
3179 3754 4.268644 CGGTCAACAGATTGCTATACACTG 59.731 45.833 0.00 0.00 35.63 3.66
3180 3755 4.433615 CGGTCAACAGATTGCTATACACT 58.566 43.478 0.00 0.00 35.63 3.55
3181 3756 3.555956 CCGGTCAACAGATTGCTATACAC 59.444 47.826 0.00 0.00 35.63 2.90
3182 3757 3.196901 ACCGGTCAACAGATTGCTATACA 59.803 43.478 0.00 0.00 35.63 2.29
3183 3758 3.793559 ACCGGTCAACAGATTGCTATAC 58.206 45.455 0.00 0.00 35.63 1.47
3184 3759 3.449377 TGACCGGTCAACAGATTGCTATA 59.551 43.478 34.60 6.08 36.53 1.31
3185 3760 2.236146 TGACCGGTCAACAGATTGCTAT 59.764 45.455 34.60 0.00 36.53 2.97
3186 3761 1.621317 TGACCGGTCAACAGATTGCTA 59.379 47.619 34.60 6.79 36.53 3.49
3187 3762 0.396435 TGACCGGTCAACAGATTGCT 59.604 50.000 34.60 0.00 36.53 3.91
3188 3763 1.234821 TTGACCGGTCAACAGATTGC 58.765 50.000 39.59 10.71 43.90 3.56
3196 3771 4.545208 TGTAGATCATTTGACCGGTCAA 57.455 40.909 39.59 39.59 46.72 3.18
3197 3772 4.161377 TCATGTAGATCATTTGACCGGTCA 59.839 41.667 33.23 33.23 34.47 4.02
3198 3773 4.508124 GTCATGTAGATCATTTGACCGGTC 59.492 45.833 28.17 28.17 32.82 4.79
3199 3774 4.081142 TGTCATGTAGATCATTTGACCGGT 60.081 41.667 6.92 6.92 36.05 5.28
3200 3775 4.441792 TGTCATGTAGATCATTTGACCGG 58.558 43.478 0.00 0.00 36.05 5.28
3201 3776 6.258507 TGAATGTCATGTAGATCATTTGACCG 59.741 38.462 12.58 0.00 36.05 4.79
3202 3777 7.558161 TGAATGTCATGTAGATCATTTGACC 57.442 36.000 12.58 2.78 36.05 4.02
3207 3782 9.404848 AGTCAATTGAATGTCATGTAGATCATT 57.595 29.630 10.35 0.00 34.09 2.57
3208 3783 8.975663 AGTCAATTGAATGTCATGTAGATCAT 57.024 30.769 10.35 0.00 37.22 2.45
3209 3784 8.797350 AAGTCAATTGAATGTCATGTAGATCA 57.203 30.769 10.35 0.00 0.00 2.92
3211 3786 9.334947 CCTAAGTCAATTGAATGTCATGTAGAT 57.665 33.333 10.35 0.00 0.00 1.98
3212 3787 7.280876 GCCTAAGTCAATTGAATGTCATGTAGA 59.719 37.037 10.35 0.00 0.00 2.59
3213 3788 7.412853 GCCTAAGTCAATTGAATGTCATGTAG 58.587 38.462 10.35 6.41 0.00 2.74
3214 3789 6.318648 GGCCTAAGTCAATTGAATGTCATGTA 59.681 38.462 10.35 0.00 0.00 2.29
3215 3790 5.126061 GGCCTAAGTCAATTGAATGTCATGT 59.874 40.000 10.35 0.00 0.00 3.21
3216 3791 5.450965 GGGCCTAAGTCAATTGAATGTCATG 60.451 44.000 10.35 0.00 0.00 3.07
3217 3792 4.646492 GGGCCTAAGTCAATTGAATGTCAT 59.354 41.667 10.35 0.00 0.00 3.06
3218 3793 4.016444 GGGCCTAAGTCAATTGAATGTCA 58.984 43.478 10.35 0.00 0.00 3.58
3219 3794 4.016444 TGGGCCTAAGTCAATTGAATGTC 58.984 43.478 10.35 0.00 0.00 3.06
3220 3795 4.046286 TGGGCCTAAGTCAATTGAATGT 57.954 40.909 10.35 3.02 0.00 2.71
3221 3796 4.646040 TGATGGGCCTAAGTCAATTGAATG 59.354 41.667 10.35 0.00 0.00 2.67
3222 3797 4.870636 TGATGGGCCTAAGTCAATTGAAT 58.129 39.130 10.35 6.06 0.00 2.57
3223 3798 4.263905 ACTGATGGGCCTAAGTCAATTGAA 60.264 41.667 10.35 0.00 0.00 2.69
3224 3799 3.266772 ACTGATGGGCCTAAGTCAATTGA 59.733 43.478 3.38 3.38 0.00 2.57
3225 3800 3.624777 ACTGATGGGCCTAAGTCAATTG 58.375 45.455 4.53 0.00 0.00 2.32
3226 3801 3.266772 TGACTGATGGGCCTAAGTCAATT 59.733 43.478 24.60 0.00 44.45 2.32
3227 3802 2.846206 TGACTGATGGGCCTAAGTCAAT 59.154 45.455 24.60 0.00 44.45 2.57
3228 3803 2.237143 CTGACTGATGGGCCTAAGTCAA 59.763 50.000 25.79 15.67 46.10 3.18
3229 3804 1.833630 CTGACTGATGGGCCTAAGTCA 59.166 52.381 24.90 24.90 45.04 3.41
3230 3805 1.834263 ACTGACTGATGGGCCTAAGTC 59.166 52.381 20.18 20.18 39.59 3.01
3231 3806 1.958288 ACTGACTGATGGGCCTAAGT 58.042 50.000 4.53 5.49 0.00 2.24
3232 3807 2.366916 CCTACTGACTGATGGGCCTAAG 59.633 54.545 4.53 1.79 0.00 2.18
3233 3808 2.398588 CCTACTGACTGATGGGCCTAA 58.601 52.381 4.53 0.00 0.00 2.69
3234 3809 1.413082 CCCTACTGACTGATGGGCCTA 60.413 57.143 4.53 0.00 0.00 3.93
3235 3810 0.692419 CCCTACTGACTGATGGGCCT 60.692 60.000 4.53 0.00 0.00 5.19
3236 3811 1.700042 CCCCTACTGACTGATGGGCC 61.700 65.000 0.00 0.00 36.66 5.80
3237 3812 1.832912 CCCCTACTGACTGATGGGC 59.167 63.158 0.00 0.00 36.66 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.