Multiple sequence alignment - TraesCS6B01G111500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G111500 chr6B 100.000 5300 0 0 1 5300 93429964 93435263 0.000000e+00 9788.0
1 TraesCS6B01G111500 chr6B 80.526 950 153 20 1 939 558829637 558828709 0.000000e+00 701.0
2 TraesCS6B01G111500 chr6B 80.316 950 155 20 1 939 558747054 558746126 0.000000e+00 689.0
3 TraesCS6B01G111500 chr6B 88.727 479 44 2 2774 3243 683548158 683548635 1.280000e-160 577.0
4 TraesCS6B01G111500 chrUn 95.458 1475 55 6 3828 5300 19246121 19244657 0.000000e+00 2342.0
5 TraesCS6B01G111500 chrUn 88.372 258 24 4 2275 2529 19248149 19247895 6.670000e-79 305.0
6 TraesCS6B01G111500 chrUn 99.225 129 1 0 3680 3808 183131008 183130880 3.190000e-57 233.0
7 TraesCS6B01G111500 chrUn 90.000 180 16 2 2103 2280 19248391 19248212 1.150000e-56 231.0
8 TraesCS6B01G111500 chrUn 96.923 65 2 0 3423 3487 19247093 19247029 5.610000e-20 110.0
9 TraesCS6B01G111500 chrUn 96.552 58 1 1 3597 3654 19246344 19246288 1.570000e-15 95.3
10 TraesCS6B01G111500 chr6A 94.752 1410 57 9 3896 5300 57690187 57691584 0.000000e+00 2178.0
11 TraesCS6B01G111500 chr6A 83.083 266 37 6 2266 2529 57685011 57685270 8.870000e-58 235.0
12 TraesCS6B01G111500 chr6A 96.923 65 2 0 3423 3487 57688132 57688196 5.610000e-20 110.0
13 TraesCS6B01G111500 chr5A 96.680 964 29 3 404 1365 114380262 114379300 0.000000e+00 1600.0
14 TraesCS6B01G111500 chr5A 96.144 389 15 0 1714 2102 114378482 114378094 2.080000e-178 636.0
15 TraesCS6B01G111500 chr5A 95.686 255 11 0 1373 1627 114379108 114378854 1.370000e-110 411.0
16 TraesCS6B01G111500 chr5A 75.726 758 141 30 1 743 545879039 545879768 1.830000e-89 340.0
17 TraesCS6B01G111500 chr5A 79.310 377 61 8 386 759 4092261 4091899 1.140000e-61 248.0
18 TraesCS6B01G111500 chr5A 96.599 147 5 0 2530 2676 423046851 423046705 1.470000e-60 244.0
19 TraesCS6B01G111500 chr5A 96.575 146 4 1 2531 2676 423044194 423044338 1.910000e-59 241.0
20 TraesCS6B01G111500 chr7B 82.583 844 125 12 1 839 11288737 11289563 0.000000e+00 725.0
21 TraesCS6B01G111500 chr7B 78.723 517 94 16 5 512 692920433 692920942 1.100000e-86 331.0
22 TraesCS6B01G111500 chr7B 95.890 146 4 1 2531 2676 2750831 2750974 8.870000e-58 235.0
23 TraesCS6B01G111500 chr7B 71.905 630 144 24 1373 1976 11290202 11290824 9.190000e-33 152.0
24 TraesCS6B01G111500 chr6D 88.130 615 58 5 2677 3280 450354551 450355161 0.000000e+00 717.0
25 TraesCS6B01G111500 chr6D 78.543 755 135 17 1 748 31798615 31797881 6.210000e-129 472.0
26 TraesCS6B01G111500 chr7D 80.717 949 145 26 1 936 504350619 504351542 0.000000e+00 704.0
27 TraesCS6B01G111500 chr7D 74.716 969 181 42 1 939 497949289 497948355 1.800000e-99 374.0
28 TraesCS6B01G111500 chr7D 78.947 152 29 3 1858 2007 497946994 497946844 3.380000e-17 100.0
29 TraesCS6B01G111500 chr7D 72.593 270 68 5 1653 1920 504353913 504354178 3.400000e-12 84.2
30 TraesCS6B01G111500 chr4D 80.243 577 86 15 190 759 87556594 87556039 4.940000e-110 409.0
31 TraesCS6B01G111500 chr3A 79.203 577 91 17 190 759 660898053 660897499 1.800000e-99 374.0
32 TraesCS6B01G111500 chr3A 81.548 336 45 8 450 783 9877510 9877830 1.460000e-65 261.0
33 TraesCS6B01G111500 chr3A 98.496 133 2 0 3676 3808 653508462 653508330 8.870000e-58 235.0
34 TraesCS6B01G111500 chr3A 97.778 135 3 0 3674 3808 481651575 481651441 3.190000e-57 233.0
35 TraesCS6B01G111500 chr3A 77.910 335 68 5 1 332 72224946 72224615 2.500000e-48 204.0
36 TraesCS6B01G111500 chr3A 85.475 179 26 0 586 764 67370881 67371059 2.520000e-43 187.0
37 TraesCS6B01G111500 chr3A 85.475 179 26 0 586 764 67375308 67375486 2.520000e-43 187.0
38 TraesCS6B01G111500 chr3A 85.475 179 26 0 586 764 67379722 67379900 2.520000e-43 187.0
39 TraesCS6B01G111500 chr4B 97.260 146 3 1 2531 2676 183675891 183675747 4.100000e-61 246.0
40 TraesCS6B01G111500 chr4B 95.395 152 7 0 2525 2676 183673231 183673382 5.300000e-60 243.0
41 TraesCS6B01G111500 chr4B 95.890 146 4 1 2531 2676 602889305 602889162 8.870000e-58 235.0
42 TraesCS6B01G111500 chr4B 94.118 153 6 3 2525 2676 602883927 602884077 4.130000e-56 230.0
43 TraesCS6B01G111500 chr2A 96.599 147 4 1 2530 2676 757957939 757958084 5.300000e-60 243.0
44 TraesCS6B01G111500 chr2A 96.575 146 4 1 2531 2676 757960595 757960451 1.910000e-59 241.0
45 TraesCS6B01G111500 chr2A 97.710 131 3 0 3681 3811 43500348 43500218 5.340000e-55 226.0
46 TraesCS6B01G111500 chr7A 99.237 131 1 0 3677 3807 98086655 98086525 2.470000e-58 237.0
47 TraesCS6B01G111500 chr4A 98.519 135 1 1 3678 3811 58534198 58534064 2.470000e-58 237.0
48 TraesCS6B01G111500 chr3B 99.225 129 1 0 3679 3807 523966901 523966773 3.190000e-57 233.0
49 TraesCS6B01G111500 chr1B 98.438 128 2 0 3680 3807 669017179 669017052 5.340000e-55 226.0
50 TraesCS6B01G111500 chr5B 79.429 350 46 13 439 783 18672389 18672717 1.920000e-54 224.0
51 TraesCS6B01G111500 chr1A 96.992 133 4 0 3675 3807 14170196 14170064 1.920000e-54 224.0
52 TraesCS6B01G111500 chr1A 87.151 179 23 0 586 764 590297596 590297774 2.500000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G111500 chr6B 93429964 93435263 5299 False 9788.000000 9788 100.0000 1 5300 1 chr6B.!!$F1 5299
1 TraesCS6B01G111500 chr6B 558828709 558829637 928 True 701.000000 701 80.5260 1 939 1 chr6B.!!$R2 938
2 TraesCS6B01G111500 chr6B 558746126 558747054 928 True 689.000000 689 80.3160 1 939 1 chr6B.!!$R1 938
3 TraesCS6B01G111500 chrUn 19244657 19248391 3734 True 616.660000 2342 93.4610 2103 5300 5 chrUn.!!$R2 3197
4 TraesCS6B01G111500 chr6A 57685011 57691584 6573 False 841.000000 2178 91.5860 2266 5300 3 chr6A.!!$F1 3034
5 TraesCS6B01G111500 chr5A 114378094 114380262 2168 True 882.333333 1600 96.1700 404 2102 3 chr5A.!!$R3 1698
6 TraesCS6B01G111500 chr5A 545879039 545879768 729 False 340.000000 340 75.7260 1 743 1 chr5A.!!$F2 742
7 TraesCS6B01G111500 chr7B 11288737 11290824 2087 False 438.500000 725 77.2440 1 1976 2 chr7B.!!$F3 1975
8 TraesCS6B01G111500 chr7B 692920433 692920942 509 False 331.000000 331 78.7230 5 512 1 chr7B.!!$F2 507
9 TraesCS6B01G111500 chr6D 450354551 450355161 610 False 717.000000 717 88.1300 2677 3280 1 chr6D.!!$F1 603
10 TraesCS6B01G111500 chr6D 31797881 31798615 734 True 472.000000 472 78.5430 1 748 1 chr6D.!!$R1 747
11 TraesCS6B01G111500 chr7D 504350619 504354178 3559 False 394.100000 704 76.6550 1 1920 2 chr7D.!!$F1 1919
12 TraesCS6B01G111500 chr7D 497946844 497949289 2445 True 237.000000 374 76.8315 1 2007 2 chr7D.!!$R1 2006
13 TraesCS6B01G111500 chr4D 87556039 87556594 555 True 409.000000 409 80.2430 190 759 1 chr4D.!!$R1 569
14 TraesCS6B01G111500 chr3A 660897499 660898053 554 True 374.000000 374 79.2030 190 759 1 chr3A.!!$R4 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 365 0.038166 ACCGGCATGATCCAGTGTTT 59.962 50.0 0.0 0.0 0.00 2.83 F
1642 1917 0.030638 GAGACTGAGCAGCGAGGATC 59.969 60.0 0.0 0.0 0.00 3.36 F
2535 4424 0.107848 AGATAGGGTTTTGCGGACGG 60.108 55.0 0.0 0.0 0.00 4.79 F
2673 4627 0.169672 TCGACTAGTACAACGCTGCC 59.830 55.0 0.0 0.0 0.00 4.85 F
2769 4723 0.318441 CAGTTCTCTGGACGAAGCCA 59.682 55.0 0.0 0.0 37.97 4.75 F
3093 5056 0.384309 TAGCGTACAGGATTGGCTCG 59.616 55.0 0.0 0.0 35.28 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 3852 0.025001 CTTTATCACAACGGCTCGCG 59.975 55.000 0.00 0.0 0.00 5.87 R
3575 8345 0.040958 GACAAGTGCAAGAACCTGCG 60.041 55.000 0.00 0.0 45.74 5.18 R
3789 10122 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.0 0.00 4.30 R
3843 10176 0.521867 CGTGCATGCTGAAATCCACG 60.522 55.000 20.33 13.6 39.75 4.94 R
3848 10181 1.200716 CCTTGACGTGCATGCTGAAAT 59.799 47.619 20.33 0.0 0.00 2.17 R
4374 10728 1.278238 GAACATCTGTTACGGCCTCG 58.722 55.000 0.00 0.0 38.56 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.037549 AGTCTTCCTCACATCATCCTCC 58.962 50.000 0.00 0.00 0.00 4.30
146 155 6.714810 TGTGTACTTTGGCTAGATTCACATTT 59.285 34.615 0.00 0.00 0.00 2.32
188 197 6.169094 CACCAAATCTCTGTTGTAGACATCT 58.831 40.000 0.00 0.00 37.69 2.90
202 211 1.672881 GACATCTATGTGCTTGTGGGC 59.327 52.381 0.00 0.00 41.95 5.36
216 225 2.044352 GGGCCGGCCAGTGTATTT 60.044 61.111 44.46 0.00 37.98 1.40
230 239 5.221106 CCAGTGTATTTTCTGCCCATATGTG 60.221 44.000 1.24 0.00 0.00 3.21
253 274 3.251004 GGTGACAGAGAATGGTTGTGTTC 59.749 47.826 0.00 0.00 0.00 3.18
287 308 4.019771 TCAGCTATGTACCAACCATTGTCA 60.020 41.667 0.00 0.00 0.00 3.58
314 335 3.466836 TCGGAGCAGCCTTATTAATGTG 58.533 45.455 0.00 0.00 0.00 3.21
326 347 5.451798 CCTTATTAATGTGGGGCATTCACAC 60.452 44.000 9.16 0.00 46.19 3.82
337 358 0.664761 CATTCACACCGGCATGATCC 59.335 55.000 0.00 0.00 0.00 3.36
344 365 0.038166 ACCGGCATGATCCAGTGTTT 59.962 50.000 0.00 0.00 0.00 2.83
349 370 2.562298 GGCATGATCCAGTGTTTTCCAA 59.438 45.455 0.00 0.00 0.00 3.53
369 390 0.541764 TCCGGCTTTTCCCTGCAAAT 60.542 50.000 0.00 0.00 0.00 2.32
370 391 1.181786 CCGGCTTTTCCCTGCAAATA 58.818 50.000 0.00 0.00 0.00 1.40
373 394 1.899142 GGCTTTTCCCTGCAAATACCA 59.101 47.619 0.00 0.00 0.00 3.25
374 395 2.094026 GGCTTTTCCCTGCAAATACCAG 60.094 50.000 0.00 0.00 0.00 4.00
376 397 3.761752 GCTTTTCCCTGCAAATACCAGTA 59.238 43.478 0.00 0.00 0.00 2.74
377 398 4.219725 GCTTTTCCCTGCAAATACCAGTAA 59.780 41.667 0.00 0.00 0.00 2.24
378 399 5.105351 GCTTTTCCCTGCAAATACCAGTAAT 60.105 40.000 0.00 0.00 0.00 1.89
380 401 6.524101 TTTCCCTGCAAATACCAGTAATTC 57.476 37.500 0.00 0.00 0.00 2.17
398 422 1.305201 TCAAAAACAGACGGGTCAGC 58.695 50.000 1.17 0.00 0.00 4.26
400 424 1.264288 CAAAAACAGACGGGTCAGCTC 59.736 52.381 1.17 0.00 0.00 4.09
565 594 4.467795 CCTTCTCCCACAAGTAGAGATTGA 59.532 45.833 3.77 0.00 36.57 2.57
848 878 4.917415 GGTTTTCGACATTTTGGATGTCAG 59.083 41.667 16.60 10.58 46.38 3.51
856 886 6.797033 CGACATTTTGGATGTCAGTTACTTTC 59.203 38.462 16.60 0.00 46.38 2.62
883 913 1.305802 ACCAGCCACGACCCATAGA 60.306 57.895 0.00 0.00 0.00 1.98
893 923 3.374058 CACGACCCATAGAATTTGTGGTC 59.626 47.826 0.00 0.00 39.07 4.02
916 948 3.336468 ACTCAAGCTGCATCTCAGAAAG 58.664 45.455 1.02 0.00 45.72 2.62
980 1012 3.123050 CAAAACAAACCAAGCCTAGCAC 58.877 45.455 0.00 0.00 0.00 4.40
1124 1171 2.101640 TAGCATGCCTGATCACCCTA 57.898 50.000 15.66 0.00 0.00 3.53
1325 1390 4.267928 GTGCTACTATCTAAAACACCTGCG 59.732 45.833 0.00 0.00 0.00 5.18
1361 1426 1.453155 AGCCTACCACAAAATCTGCG 58.547 50.000 0.00 0.00 0.00 5.18
1365 1430 3.815401 GCCTACCACAAAATCTGCGATAT 59.185 43.478 0.00 0.00 0.00 1.63
1366 1431 4.083802 GCCTACCACAAAATCTGCGATATC 60.084 45.833 0.00 0.00 0.00 1.63
1368 1433 5.702670 CCTACCACAAAATCTGCGATATCAT 59.297 40.000 3.12 0.00 0.00 2.45
1370 1435 6.064846 ACCACAAAATCTGCGATATCATTC 57.935 37.500 3.12 0.00 0.00 2.67
1377 1626 8.451748 CAAAATCTGCGATATCATTCTGATCAT 58.548 33.333 3.12 0.00 38.26 2.45
1456 1705 0.107508 CCATCCGCCACACAGATCTT 60.108 55.000 0.00 0.00 0.00 2.40
1535 1810 0.529378 CTCCATTGGAAGCTGGTTGC 59.471 55.000 6.88 4.03 43.29 4.17
1627 1902 1.740025 CAAAAATCCCCGAGCAGAGAC 59.260 52.381 0.00 0.00 0.00 3.36
1628 1903 1.280457 AAAATCCCCGAGCAGAGACT 58.720 50.000 0.00 0.00 0.00 3.24
1632 1907 2.493973 CCCGAGCAGAGACTGAGC 59.506 66.667 2.81 0.00 32.44 4.26
1633 1908 2.346541 CCCGAGCAGAGACTGAGCA 61.347 63.158 2.81 0.00 32.44 4.26
1637 1912 1.932011 GAGCAGAGACTGAGCAGCGA 61.932 60.000 2.81 0.00 32.44 4.93
1640 1915 1.001517 AGAGACTGAGCAGCGAGGA 60.002 57.895 0.00 0.00 0.00 3.71
1642 1917 0.030638 GAGACTGAGCAGCGAGGATC 59.969 60.000 0.00 0.00 0.00 3.36
1643 1918 1.067250 GACTGAGCAGCGAGGATCC 59.933 63.158 2.48 2.48 0.00 3.36
1644 1919 1.670949 GACTGAGCAGCGAGGATCCA 61.671 60.000 15.82 0.00 0.00 3.41
1646 1921 0.107993 CTGAGCAGCGAGGATCCAAA 60.108 55.000 15.82 0.00 0.00 3.28
1647 1922 0.324614 TGAGCAGCGAGGATCCAAAA 59.675 50.000 15.82 0.00 0.00 2.44
1649 1924 1.399791 GAGCAGCGAGGATCCAAAAAG 59.600 52.381 15.82 1.67 0.00 2.27
1650 1925 0.453390 GCAGCGAGGATCCAAAAAGG 59.547 55.000 15.82 0.00 39.47 3.11
1652 1927 1.026718 AGCGAGGATCCAAAAAGGCG 61.027 55.000 15.82 6.73 37.29 5.52
1653 1928 1.993369 GCGAGGATCCAAAAAGGCGG 61.993 60.000 15.82 0.00 37.29 6.13
1654 1929 1.809869 GAGGATCCAAAAAGGCGGC 59.190 57.895 15.82 0.00 37.29 6.53
1655 1930 0.681243 GAGGATCCAAAAAGGCGGCT 60.681 55.000 15.82 5.25 37.29 5.52
1658 1933 0.109132 GATCCAAAAAGGCGGCTGTG 60.109 55.000 14.21 11.41 37.29 3.66
1659 1934 1.535204 ATCCAAAAAGGCGGCTGTGG 61.535 55.000 23.23 23.23 37.29 4.17
1660 1935 2.339712 CAAAAAGGCGGCTGTGGG 59.660 61.111 14.21 0.00 0.00 4.61
1661 1936 2.197324 AAAAAGGCGGCTGTGGGA 59.803 55.556 14.21 0.00 0.00 4.37
1664 3461 0.831711 AAAAGGCGGCTGTGGGATTT 60.832 50.000 14.21 5.11 0.00 2.17
1666 3463 4.133796 GGCGGCTGTGGGATTTGC 62.134 66.667 0.00 0.00 0.00 3.68
1673 3470 1.745653 GCTGTGGGATTTGCTTACCTC 59.254 52.381 0.00 0.00 0.00 3.85
1674 3471 2.879756 GCTGTGGGATTTGCTTACCTCA 60.880 50.000 0.00 0.00 0.00 3.86
1679 3476 5.593909 TGTGGGATTTGCTTACCTCATAATG 59.406 40.000 0.00 0.00 0.00 1.90
1688 3485 4.022849 GCTTACCTCATAATGGGTTGCATC 60.023 45.833 0.00 0.00 37.07 3.91
1695 3492 2.307496 AATGGGTTGCATCAGGAACA 57.693 45.000 2.47 0.00 46.62 3.18
1703 3500 0.753111 GCATCAGGAACACCATCCCC 60.753 60.000 0.00 0.00 40.59 4.81
1704 3501 0.625316 CATCAGGAACACCATCCCCA 59.375 55.000 0.00 0.00 40.59 4.96
1708 3512 0.405585 AGGAACACCATCCCCACAAG 59.594 55.000 0.00 0.00 40.59 3.16
1710 3514 0.539438 GAACACCATCCCCACAAGCA 60.539 55.000 0.00 0.00 0.00 3.91
1712 3516 1.075482 CACCATCCCCACAAGCACT 59.925 57.895 0.00 0.00 0.00 4.40
1834 3639 0.546747 TTACTAGCCTGCCCACCACT 60.547 55.000 0.00 0.00 0.00 4.00
2036 3842 6.238211 GCTGAATAATTGAACGCTACACATCT 60.238 38.462 0.00 0.00 0.00 2.90
2044 3850 0.941463 CGCTACACATCTCGATGCCC 60.941 60.000 6.81 0.00 42.39 5.36
2046 3852 1.604185 GCTACACATCTCGATGCCCTC 60.604 57.143 6.81 0.00 42.39 4.30
2073 3879 3.067106 CCGTTGTGATAAAGTGCTCACT 58.933 45.455 0.00 0.00 44.94 3.41
2124 3930 8.219105 GTCCGTCTATGTGTAAACTAAACAAAG 58.781 37.037 0.00 0.00 0.00 2.77
2173 3979 1.006832 CCGGTTTGCATCTTAGGTCG 58.993 55.000 0.00 0.00 0.00 4.79
2178 3984 4.569162 CGGTTTGCATCTTAGGTCGAATAA 59.431 41.667 0.00 0.00 0.00 1.40
2180 3986 6.487103 GGTTTGCATCTTAGGTCGAATAAAG 58.513 40.000 0.00 0.00 0.00 1.85
2181 3987 6.458342 GGTTTGCATCTTAGGTCGAATAAAGG 60.458 42.308 0.00 0.00 0.00 3.11
2182 3988 4.127171 TGCATCTTAGGTCGAATAAAGGC 58.873 43.478 0.00 0.00 0.00 4.35
2183 3989 4.127171 GCATCTTAGGTCGAATAAAGGCA 58.873 43.478 0.00 0.00 0.00 4.75
2220 4028 5.277058 GGAGTCAAATTGCACTATGTCGATC 60.277 44.000 0.00 0.00 0.00 3.69
2225 4033 1.664965 GCACTATGTCGATCCCGGC 60.665 63.158 0.00 0.00 41.51 6.13
2237 4045 2.642171 ATCCCGGCCAGGATCTATTA 57.358 50.000 15.33 0.00 43.48 0.98
2239 4047 2.187958 TCCCGGCCAGGATCTATTATG 58.812 52.381 2.59 0.00 45.00 1.90
2242 4050 3.244911 CCCGGCCAGGATCTATTATGTTT 60.245 47.826 14.30 0.00 45.00 2.83
2251 4059 5.462398 AGGATCTATTATGTTTGCGACGTTC 59.538 40.000 0.00 0.00 0.00 3.95
2264 4072 3.554692 CGTTCGCCTCGCCATGTC 61.555 66.667 0.00 0.00 0.00 3.06
2296 4172 1.134367 CTCCTATGCCACGTCTTCGAA 59.866 52.381 0.00 0.00 40.62 3.71
2350 4226 0.464036 TGGTCGTGCCCATCTATGAC 59.536 55.000 0.00 0.00 36.04 3.06
2358 4234 4.649692 GTGCCCATCTATGACAGATCATT 58.350 43.478 0.00 0.00 43.40 2.57
2368 4244 7.215085 TCTATGACAGATCATTGATTGTGGAG 58.785 38.462 14.87 10.58 43.40 3.86
2370 4246 3.285484 ACAGATCATTGATTGTGGAGCC 58.715 45.455 0.00 0.00 0.00 4.70
2376 4252 1.909700 TTGATTGTGGAGCCAGGAAC 58.090 50.000 0.00 0.00 0.00 3.62
2400 4287 4.793071 CTCGCTAGATCAACGATCTCAAT 58.207 43.478 9.69 0.00 45.03 2.57
2411 4298 5.814188 TCAACGATCTCAATCTTGGAATCAG 59.186 40.000 0.00 0.00 0.00 2.90
2473 4360 2.178580 GGCCTAGGAGATCTCATCCTG 58.821 57.143 23.85 10.15 46.81 3.86
2474 4361 2.492567 GGCCTAGGAGATCTCATCCTGT 60.493 54.545 23.85 4.00 46.81 4.00
2529 4418 6.039829 CCTCAAAGGAATAGATAGGGTTTTGC 59.960 42.308 0.00 0.00 37.67 3.68
2530 4419 5.588648 TCAAAGGAATAGATAGGGTTTTGCG 59.411 40.000 0.00 0.00 0.00 4.85
2531 4420 4.086706 AGGAATAGATAGGGTTTTGCGG 57.913 45.455 0.00 0.00 0.00 5.69
2532 4421 3.714798 AGGAATAGATAGGGTTTTGCGGA 59.285 43.478 0.00 0.00 0.00 5.54
2534 4423 2.589798 TAGATAGGGTTTTGCGGACG 57.410 50.000 0.00 0.00 0.00 4.79
2535 4424 0.107848 AGATAGGGTTTTGCGGACGG 60.108 55.000 0.00 0.00 0.00 4.79
2536 4425 1.078001 ATAGGGTTTTGCGGACGGG 60.078 57.895 0.00 0.00 0.00 5.28
2537 4426 2.546114 ATAGGGTTTTGCGGACGGGG 62.546 60.000 0.00 0.00 0.00 5.73
2541 4430 3.291383 TTTTGCGGACGGGGCTTG 61.291 61.111 0.00 0.00 0.00 4.01
2596 4485 3.583276 GACACGCGTCACCCATCCA 62.583 63.158 9.86 0.00 42.13 3.41
2598 4487 2.125147 ACGCGTCACCCATCCATG 60.125 61.111 5.58 0.00 0.00 3.66
2601 4490 2.591753 CGTCACCCATCCATGCCT 59.408 61.111 0.00 0.00 0.00 4.75
2604 4493 2.196776 CACCCATCCATGCCTCCC 59.803 66.667 0.00 0.00 0.00 4.30
2610 4499 2.087461 ATCCATGCCTCCCCCTTCC 61.087 63.158 0.00 0.00 0.00 3.46
2611 4500 4.195334 CCATGCCTCCCCCTTCCG 62.195 72.222 0.00 0.00 0.00 4.30
2613 4502 3.411517 ATGCCTCCCCCTTCCGTG 61.412 66.667 0.00 0.00 0.00 4.94
2624 4513 1.173913 CCTTCCGTGGCCCTTTTTAG 58.826 55.000 0.00 0.00 0.00 1.85
2625 4514 0.526211 CTTCCGTGGCCCTTTTTAGC 59.474 55.000 0.00 0.00 0.00 3.09
2630 4584 2.885113 GGCCCTTTTTAGCCGCAG 59.115 61.111 0.00 0.00 39.87 5.18
2631 4585 1.677633 GGCCCTTTTTAGCCGCAGA 60.678 57.895 0.00 0.00 39.87 4.26
2659 4613 1.784358 TCCGGAAATACCCATCGACT 58.216 50.000 0.00 0.00 34.64 4.18
2661 4615 2.889045 TCCGGAAATACCCATCGACTAG 59.111 50.000 0.00 0.00 34.64 2.57
2662 4616 2.626743 CCGGAAATACCCATCGACTAGT 59.373 50.000 0.00 0.00 34.64 2.57
2663 4617 3.822735 CCGGAAATACCCATCGACTAGTA 59.177 47.826 0.00 0.00 34.64 1.82
2664 4618 4.320788 CCGGAAATACCCATCGACTAGTAC 60.321 50.000 0.00 0.00 34.64 2.73
2665 4619 4.276678 CGGAAATACCCATCGACTAGTACA 59.723 45.833 0.00 0.00 34.64 2.90
2667 4621 5.981915 GGAAATACCCATCGACTAGTACAAC 59.018 44.000 0.00 0.00 0.00 3.32
2668 4622 4.825546 ATACCCATCGACTAGTACAACG 57.174 45.455 0.00 0.00 0.00 4.10
2669 4623 1.133790 ACCCATCGACTAGTACAACGC 59.866 52.381 0.00 0.00 0.00 4.84
2671 4625 2.451132 CCATCGACTAGTACAACGCTG 58.549 52.381 0.00 0.00 0.00 5.18
2672 4626 1.846782 CATCGACTAGTACAACGCTGC 59.153 52.381 0.00 0.00 0.00 5.25
2673 4627 0.169672 TCGACTAGTACAACGCTGCC 59.830 55.000 0.00 0.00 0.00 4.85
2674 4628 0.801067 CGACTAGTACAACGCTGCCC 60.801 60.000 0.00 0.00 0.00 5.36
2675 4629 0.459759 GACTAGTACAACGCTGCCCC 60.460 60.000 0.00 0.00 0.00 5.80
2683 4637 1.378514 AACGCTGCCCCAATTCGAT 60.379 52.632 0.00 0.00 0.00 3.59
2684 4638 1.376609 AACGCTGCCCCAATTCGATC 61.377 55.000 0.00 0.00 0.00 3.69
2688 4642 0.465097 CTGCCCCAATTCGATCAGCT 60.465 55.000 0.00 0.00 0.00 4.24
2694 4648 3.539604 CCCAATTCGATCAGCTTTCTCT 58.460 45.455 0.00 0.00 0.00 3.10
2701 4655 5.193663 TCGATCAGCTTTCTCTATTCAGG 57.806 43.478 0.00 0.00 0.00 3.86
2706 4660 4.716784 TCAGCTTTCTCTATTCAGGCCTTA 59.283 41.667 0.00 0.00 0.00 2.69
2721 4675 5.046448 TCAGGCCTTAACATGCAATTTCATT 60.046 36.000 0.00 0.00 0.00 2.57
2744 4698 2.125461 GCACAAAGCAACTCTGAACC 57.875 50.000 0.00 0.00 44.79 3.62
2747 4701 2.945008 CACAAAGCAACTCTGAACCTCA 59.055 45.455 0.00 0.00 0.00 3.86
2748 4702 2.945668 ACAAAGCAACTCTGAACCTCAC 59.054 45.455 0.00 0.00 0.00 3.51
2750 4704 0.398318 AGCAACTCTGAACCTCACCC 59.602 55.000 0.00 0.00 0.00 4.61
2759 4713 1.694150 TGAACCTCACCCAGTTCTCTG 59.306 52.381 4.70 0.00 42.32 3.35
2769 4723 0.318441 CAGTTCTCTGGACGAAGCCA 59.682 55.000 0.00 0.00 37.97 4.75
2790 4744 4.396166 CCACCAAGGAATACTTACAAGCTG 59.604 45.833 0.00 0.00 41.22 4.24
2801 4755 1.438651 TACAAGCTGAACGTGGATGC 58.561 50.000 0.00 0.00 31.20 3.91
2804 4758 1.580845 AAGCTGAACGTGGATGCTGC 61.581 55.000 6.41 0.00 33.96 5.25
2810 4764 2.017049 GAACGTGGATGCTGCCTATTT 58.983 47.619 0.00 0.00 0.00 1.40
2817 4771 4.340381 GTGGATGCTGCCTATTTTGAGAAT 59.660 41.667 0.00 0.00 0.00 2.40
2822 4776 4.527816 TGCTGCCTATTTTGAGAATGGTTT 59.472 37.500 0.00 0.00 0.00 3.27
2823 4777 4.866486 GCTGCCTATTTTGAGAATGGTTTG 59.134 41.667 0.00 0.00 0.00 2.93
2824 4778 5.404466 TGCCTATTTTGAGAATGGTTTGG 57.596 39.130 0.00 0.00 0.00 3.28
2840 4794 1.932156 TTGGGAGGTGCAGGTGTTGT 61.932 55.000 0.00 0.00 0.00 3.32
2844 4798 1.152963 AGGTGCAGGTGTTGTGGTC 60.153 57.895 0.00 0.00 0.00 4.02
2860 4814 2.100197 TGGTCCGTAATGACAGAGGAG 58.900 52.381 0.00 0.00 36.97 3.69
2861 4815 2.291346 TGGTCCGTAATGACAGAGGAGA 60.291 50.000 0.00 0.00 36.97 3.71
2883 4837 3.951655 GATTGCAGGCGCGTGTTGG 62.952 63.158 28.63 6.38 42.97 3.77
2906 4860 4.330347 GCCTTTACAGAACCTTCTCGATTC 59.670 45.833 0.00 0.00 34.74 2.52
2964 4927 5.045651 TCTGAGCCTTATTGAATCACTTGGA 60.046 40.000 0.00 0.00 0.00 3.53
2981 4944 4.079212 ACTTGGATGTGCCCCAGTTATTAT 60.079 41.667 0.00 0.00 34.77 1.28
3033 4996 7.059202 AGCTTTCAAAGGAATCATTCAAGTT 57.941 32.000 0.00 0.00 31.93 2.66
3049 5012 5.165961 TCAAGTTTGGTCTCCCTATTCAG 57.834 43.478 0.00 0.00 0.00 3.02
3054 5017 4.591321 TTGGTCTCCCTATTCAGCAATT 57.409 40.909 0.00 0.00 0.00 2.32
3057 5020 4.968719 TGGTCTCCCTATTCAGCAATTCTA 59.031 41.667 0.00 0.00 0.00 2.10
3083 5046 3.775202 AGTGCTTTCAGATAGCGTACAG 58.225 45.455 8.19 0.00 41.54 2.74
3093 5056 0.384309 TAGCGTACAGGATTGGCTCG 59.616 55.000 0.00 0.00 35.28 5.03
3100 5063 1.047002 CAGGATTGGCTCGATCTCCT 58.953 55.000 0.00 0.00 36.79 3.69
3101 5064 1.000731 CAGGATTGGCTCGATCTCCTC 59.999 57.143 0.00 0.00 34.09 3.71
3106 5069 0.532573 TGGCTCGATCTCCTCACAAC 59.467 55.000 0.00 0.00 0.00 3.32
3109 5072 1.203523 GCTCGATCTCCTCACAACACT 59.796 52.381 0.00 0.00 0.00 3.55
3111 5074 1.067565 TCGATCTCCTCACAACACTGC 60.068 52.381 0.00 0.00 0.00 4.40
3114 5077 3.516615 GATCTCCTCACAACACTGCTAC 58.483 50.000 0.00 0.00 0.00 3.58
3116 5079 2.297315 TCTCCTCACAACACTGCTACAG 59.703 50.000 0.00 0.00 37.52 2.74
3151 5115 3.654414 GTGGCGCATAACTTAGCTAGAT 58.346 45.455 10.83 0.00 0.00 1.98
3211 5175 7.331026 TGATGATCCTCCGGATTTCATTATAC 58.669 38.462 19.20 10.81 43.27 1.47
3221 5185 5.107220 CGGATTTCATTATACCGGCTGTAAC 60.107 44.000 0.00 0.00 39.92 2.50
3301 5510 4.701956 AAAACACGGGCAGATAAATCAG 57.298 40.909 0.00 0.00 0.00 2.90
3302 5511 3.627395 AACACGGGCAGATAAATCAGA 57.373 42.857 0.00 0.00 0.00 3.27
3303 5512 3.627395 ACACGGGCAGATAAATCAGAA 57.373 42.857 0.00 0.00 0.00 3.02
3304 5513 4.156455 ACACGGGCAGATAAATCAGAAT 57.844 40.909 0.00 0.00 0.00 2.40
3305 5514 5.290493 ACACGGGCAGATAAATCAGAATA 57.710 39.130 0.00 0.00 0.00 1.75
3307 5516 5.934625 ACACGGGCAGATAAATCAGAATATC 59.065 40.000 0.00 0.29 0.00 1.63
3308 5517 5.352569 CACGGGCAGATAAATCAGAATATCC 59.647 44.000 0.00 0.00 30.41 2.59
3309 5518 5.013079 ACGGGCAGATAAATCAGAATATCCA 59.987 40.000 0.00 0.00 30.41 3.41
3310 5519 6.118170 CGGGCAGATAAATCAGAATATCCAT 58.882 40.000 3.91 0.00 30.41 3.41
3332 5582 9.114952 TCCATATATTCTTGCAACGACAATTTA 57.885 29.630 0.00 0.00 0.00 1.40
3340 5590 8.094798 TCTTGCAACGACAATTTAATCTACTT 57.905 30.769 0.00 0.00 0.00 2.24
3348 5598 9.755064 ACGACAATTTAATCTACTTCAAATTCG 57.245 29.630 0.00 0.00 30.27 3.34
3359 5611 9.994432 ATCTACTTCAAATTCGCATCTAAAAAG 57.006 29.630 0.00 0.00 0.00 2.27
3404 7672 3.197790 CAGGCCGATGCAACTCCG 61.198 66.667 0.00 0.00 40.13 4.63
3413 7681 1.541310 ATGCAACTCCGTCCTCCGAA 61.541 55.000 0.00 0.00 39.56 4.30
3419 7687 4.367023 CCGTCCTCCGAACCGCAA 62.367 66.667 0.00 0.00 39.56 4.85
3446 7758 4.299796 GGACCCTGCAGGCCCAAA 62.300 66.667 28.39 0.00 40.58 3.28
3493 8263 2.828868 GGCAGCCATGGACGGATA 59.171 61.111 18.40 0.00 0.00 2.59
3499 8269 2.614057 CAGCCATGGACGGATAAAAGAC 59.386 50.000 18.40 0.00 0.00 3.01
3523 8293 2.550180 GCCACTCCTGTCTTGAGTTTTC 59.450 50.000 0.00 0.00 41.02 2.29
3544 8314 5.735285 TCTTATAGCCACATGAGGAGATG 57.265 43.478 13.99 0.00 0.00 2.90
3562 8332 7.985476 AGGAGATGTAATAAAAATGTGGAACG 58.015 34.615 0.00 0.00 42.39 3.95
3575 8345 0.391130 TGGAACGAGCAGGCATGTAC 60.391 55.000 0.00 0.00 0.00 2.90
3577 8347 2.025359 GAACGAGCAGGCATGTACGC 62.025 60.000 16.04 0.00 33.08 4.42
3583 8353 1.982073 GCAGGCATGTACGCAGGTTC 61.982 60.000 0.00 0.00 0.00 3.62
3589 8359 1.135972 CATGTACGCAGGTTCTTGCAC 60.136 52.381 7.59 0.20 44.28 4.57
3617 9853 7.594758 TGTCTTGCTTGCAATTTCTGTATAAAC 59.405 33.333 8.55 0.00 0.00 2.01
3619 9855 7.594758 TCTTGCTTGCAATTTCTGTATAAACAC 59.405 33.333 8.55 0.00 0.00 3.32
3686 10019 7.229581 AGAATAACCGTTATGATCTACTCCC 57.770 40.000 4.52 0.00 0.00 4.30
3687 10020 7.011382 AGAATAACCGTTATGATCTACTCCCT 58.989 38.462 4.52 0.00 0.00 4.20
3688 10021 6.837471 ATAACCGTTATGATCTACTCCCTC 57.163 41.667 2.86 0.00 0.00 4.30
3689 10022 3.498334 ACCGTTATGATCTACTCCCTCC 58.502 50.000 0.00 0.00 0.00 4.30
3690 10023 2.488545 CCGTTATGATCTACTCCCTCCG 59.511 54.545 0.00 0.00 0.00 4.63
3691 10024 3.147629 CGTTATGATCTACTCCCTCCGT 58.852 50.000 0.00 0.00 0.00 4.69
3692 10025 3.568853 CGTTATGATCTACTCCCTCCGTT 59.431 47.826 0.00 0.00 0.00 4.44
3693 10026 4.320348 CGTTATGATCTACTCCCTCCGTTC 60.320 50.000 0.00 0.00 0.00 3.95
3694 10027 3.603965 ATGATCTACTCCCTCCGTTCT 57.396 47.619 0.00 0.00 0.00 3.01
3695 10028 2.656002 TGATCTACTCCCTCCGTTCTG 58.344 52.381 0.00 0.00 0.00 3.02
3696 10029 2.241430 TGATCTACTCCCTCCGTTCTGA 59.759 50.000 0.00 0.00 0.00 3.27
3697 10030 2.893215 TCTACTCCCTCCGTTCTGAA 57.107 50.000 0.00 0.00 0.00 3.02
3698 10031 3.383698 TCTACTCCCTCCGTTCTGAAT 57.616 47.619 0.00 0.00 0.00 2.57
3699 10032 3.709587 TCTACTCCCTCCGTTCTGAATT 58.290 45.455 0.00 0.00 0.00 2.17
3700 10033 4.863548 TCTACTCCCTCCGTTCTGAATTA 58.136 43.478 0.00 0.00 0.00 1.40
3701 10034 5.455872 TCTACTCCCTCCGTTCTGAATTAT 58.544 41.667 0.00 0.00 0.00 1.28
3702 10035 5.897824 TCTACTCCCTCCGTTCTGAATTATT 59.102 40.000 0.00 0.00 0.00 1.40
3703 10036 5.437191 ACTCCCTCCGTTCTGAATTATTT 57.563 39.130 0.00 0.00 0.00 1.40
3704 10037 5.186198 ACTCCCTCCGTTCTGAATTATTTG 58.814 41.667 0.00 0.00 0.00 2.32
3705 10038 5.174037 TCCCTCCGTTCTGAATTATTTGT 57.826 39.130 0.00 0.00 0.00 2.83
3706 10039 5.183228 TCCCTCCGTTCTGAATTATTTGTC 58.817 41.667 0.00 0.00 0.00 3.18
3707 10040 5.045869 TCCCTCCGTTCTGAATTATTTGTCT 60.046 40.000 0.00 0.00 0.00 3.41
3708 10041 5.648092 CCCTCCGTTCTGAATTATTTGTCTT 59.352 40.000 0.00 0.00 0.00 3.01
3709 10042 6.403636 CCCTCCGTTCTGAATTATTTGTCTTG 60.404 42.308 0.00 0.00 0.00 3.02
3710 10043 6.403636 CCTCCGTTCTGAATTATTTGTCTTGG 60.404 42.308 0.00 0.00 0.00 3.61
3711 10044 6.234920 TCCGTTCTGAATTATTTGTCTTGGA 58.765 36.000 0.00 0.00 0.00 3.53
3712 10045 6.884295 TCCGTTCTGAATTATTTGTCTTGGAT 59.116 34.615 0.00 0.00 0.00 3.41
3713 10046 7.393234 TCCGTTCTGAATTATTTGTCTTGGATT 59.607 33.333 0.00 0.00 0.00 3.01
3714 10047 8.028938 CCGTTCTGAATTATTTGTCTTGGATTT 58.971 33.333 0.00 0.00 0.00 2.17
3715 10048 8.853345 CGTTCTGAATTATTTGTCTTGGATTTG 58.147 33.333 0.00 0.00 0.00 2.32
3716 10049 9.696917 GTTCTGAATTATTTGTCTTGGATTTGT 57.303 29.630 0.00 0.00 0.00 2.83
3717 10050 9.912634 TTCTGAATTATTTGTCTTGGATTTGTC 57.087 29.630 0.00 0.00 0.00 3.18
3718 10051 9.300681 TCTGAATTATTTGTCTTGGATTTGTCT 57.699 29.630 0.00 0.00 0.00 3.41
3726 10059 8.777865 TTTGTCTTGGATTTGTCTAGATACAG 57.222 34.615 0.00 0.00 0.00 2.74
3727 10060 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
3728 10061 7.776107 TGTCTTGGATTTGTCTAGATACAGAG 58.224 38.462 0.00 0.00 0.00 3.35
3729 10062 7.147828 TGTCTTGGATTTGTCTAGATACAGAGG 60.148 40.741 0.00 0.00 0.00 3.69
3730 10063 6.897966 TCTTGGATTTGTCTAGATACAGAGGT 59.102 38.462 0.00 0.00 0.00 3.85
3731 10064 8.059461 TCTTGGATTTGTCTAGATACAGAGGTA 58.941 37.037 0.00 0.00 0.00 3.08
3732 10065 8.783660 TTGGATTTGTCTAGATACAGAGGTAT 57.216 34.615 0.00 0.00 42.86 2.73
3747 10080 7.661536 ACAGAGGTATCTAGCACTAAAATGA 57.338 36.000 0.00 0.00 33.22 2.57
3748 10081 7.721402 ACAGAGGTATCTAGCACTAAAATGAG 58.279 38.462 0.00 0.00 33.22 2.90
3749 10082 7.343316 ACAGAGGTATCTAGCACTAAAATGAGT 59.657 37.037 0.00 0.00 33.22 3.41
3750 10083 7.865385 CAGAGGTATCTAGCACTAAAATGAGTC 59.135 40.741 0.00 0.00 33.22 3.36
3751 10084 7.782644 AGAGGTATCTAGCACTAAAATGAGTCT 59.217 37.037 0.00 0.00 32.54 3.24
3752 10085 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
3753 10086 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
3754 10087 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
3758 10091 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
3761 10094 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
3762 10095 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
3763 10096 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
3764 10097 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
3778 10111 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
3779 10112 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
3780 10113 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
3781 10114 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
3782 10115 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
3783 10116 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
3784 10117 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
3785 10118 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
3786 10119 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
3787 10120 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
3788 10121 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
3790 10123 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
3791 10124 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
3792 10125 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
3793 10126 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
3794 10127 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
3795 10128 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
3796 10129 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
3812 10145 1.135170 GGAACGGAGGGAGTAGAAACG 60.135 57.143 0.00 0.00 0.00 3.60
3817 10150 2.354199 CGGAGGGAGTAGAAACGACTAC 59.646 54.545 0.00 0.00 41.87 2.73
3848 10181 6.549433 AACCTTAAATACTGTATCCGTGGA 57.451 37.500 0.00 0.00 0.00 4.02
3865 10219 0.804364 GGATTTCAGCATGCACGTCA 59.196 50.000 21.98 0.00 34.76 4.35
3881 10235 3.009723 ACGTCAAGGTAGCATTTCCATG 58.990 45.455 0.00 0.00 0.00 3.66
3944 10298 8.180920 AGCATTGTTGAATTTTAAACAAACACC 58.819 29.630 14.90 7.41 46.22 4.16
4024 10378 2.170187 AGGATGCTGAGGAGATCAACAC 59.830 50.000 0.00 0.00 36.85 3.32
4060 10414 5.941555 AGGAAGTCTCTCGGTAATGAAAT 57.058 39.130 0.00 0.00 0.00 2.17
4190 10544 5.779806 ACACTAATGATGAACACGTAAGC 57.220 39.130 0.00 0.00 45.62 3.09
4196 10550 6.991485 AATGATGAACACGTAAGCAAAAAG 57.009 33.333 0.00 0.00 45.62 2.27
4225 10579 7.506328 ACCAAGTTACCTTTGTATTTGAGTC 57.494 36.000 0.00 0.00 29.85 3.36
4226 10580 7.287810 ACCAAGTTACCTTTGTATTTGAGTCT 58.712 34.615 0.00 0.00 29.85 3.24
4227 10581 7.778382 ACCAAGTTACCTTTGTATTTGAGTCTT 59.222 33.333 0.00 0.00 29.85 3.01
4228 10582 8.630037 CCAAGTTACCTTTGTATTTGAGTCTTT 58.370 33.333 0.00 0.00 29.85 2.52
4346 10700 5.381757 TGCAAGGATAACTAACAACCAACT 58.618 37.500 0.00 0.00 0.00 3.16
4411 10765 3.057245 TGTTCCTCTCTGTGTTCTCATCG 60.057 47.826 0.00 0.00 0.00 3.84
4474 10829 2.224314 GCTCTGTGAGGTAAAAGTGTGC 59.776 50.000 0.00 0.00 0.00 4.57
4485 10840 4.508124 GGTAAAAGTGTGCTATCCAGATCG 59.492 45.833 0.00 0.00 0.00 3.69
4494 10849 3.636764 TGCTATCCAGATCGTGAGCTTAA 59.363 43.478 0.00 0.00 0.00 1.85
4553 10908 2.227388 GGTGGTTTGTGCTCTCATTGAG 59.773 50.000 7.38 7.38 45.33 3.02
4623 10978 8.345565 GCCCTTGTGTAAGATAAAAGTATCATG 58.654 37.037 0.00 0.00 38.95 3.07
4783 11142 2.281762 GCTTTCTTGTAGCGGTCATACG 59.718 50.000 0.00 0.00 0.00 3.06
4784 11143 3.766151 CTTTCTTGTAGCGGTCATACGA 58.234 45.455 0.00 0.00 35.47 3.43
4785 11144 4.360563 CTTTCTTGTAGCGGTCATACGAT 58.639 43.478 0.00 0.00 35.47 3.73
4786 11145 5.503662 TTTCTTGTAGCGGTCATACGATA 57.496 39.130 0.00 0.00 35.47 2.92
4835 11194 1.461127 GTAGGTTTCTTGCAGCAGTCG 59.539 52.381 0.00 0.00 0.00 4.18
4845 11204 0.747255 GCAGCAGTCGGGAATCTAGA 59.253 55.000 0.00 0.00 0.00 2.43
4991 11350 4.743493 TCAAAGAACACCAAAGAAAGTGC 58.257 39.130 0.00 0.00 37.51 4.40
5084 11443 0.887933 TTGCTTTCTTTCCATCGGCC 59.112 50.000 0.00 0.00 0.00 6.13
5134 11493 5.389859 TTTAACCCATGACTTGCATCTTG 57.610 39.130 0.00 0.00 34.15 3.02
5137 11496 2.173519 CCCATGACTTGCATCTTGGTT 58.826 47.619 16.77 0.00 40.63 3.67
5194 11553 6.075280 CGTTCCAGGTTTCTTGTTTATTACG 58.925 40.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.539929 GCGGAGGATGATGTGAGGAAG 60.540 57.143 0.00 0.00 0.00 3.46
188 197 2.045438 CCGGCCCACAAGCACATA 60.045 61.111 0.00 0.00 0.00 2.29
202 211 0.451783 GCAGAAAATACACTGGCCGG 59.548 55.000 11.02 11.02 35.05 6.13
230 239 2.154462 CACAACCATTCTCTGTCACCC 58.846 52.381 0.00 0.00 0.00 4.61
233 242 4.422073 AGAACACAACCATTCTCTGTCA 57.578 40.909 0.00 0.00 28.79 3.58
253 274 2.819115 ACATAGCTGAGCATCGTGAAG 58.181 47.619 7.39 0.00 38.61 3.02
287 308 3.498774 ATAAGGCTGCTCCGATCAAAT 57.501 42.857 0.00 0.00 40.77 2.32
326 347 1.133025 GAAAACACTGGATCATGCCGG 59.867 52.381 0.00 0.00 40.29 6.13
337 358 1.247567 AGCCGGATTGGAAAACACTG 58.752 50.000 5.05 0.00 42.00 3.66
344 365 0.407918 AGGGAAAAGCCGGATTGGAA 59.592 50.000 5.31 0.00 42.00 3.53
349 370 0.541764 TTTGCAGGGAAAAGCCGGAT 60.542 50.000 5.05 0.00 37.63 4.18
369 390 5.470777 CCCGTCTGTTTTTGAATTACTGGTA 59.529 40.000 0.00 0.00 0.00 3.25
370 391 4.277423 CCCGTCTGTTTTTGAATTACTGGT 59.723 41.667 0.00 0.00 0.00 4.00
373 394 5.127491 TGACCCGTCTGTTTTTGAATTACT 58.873 37.500 0.00 0.00 0.00 2.24
374 395 5.427036 TGACCCGTCTGTTTTTGAATTAC 57.573 39.130 0.00 0.00 0.00 1.89
376 397 3.243401 GCTGACCCGTCTGTTTTTGAATT 60.243 43.478 4.02 0.00 0.00 2.17
377 398 2.293399 GCTGACCCGTCTGTTTTTGAAT 59.707 45.455 4.02 0.00 0.00 2.57
378 399 1.673920 GCTGACCCGTCTGTTTTTGAA 59.326 47.619 4.02 0.00 0.00 2.69
380 401 1.264288 GAGCTGACCCGTCTGTTTTTG 59.736 52.381 0.00 0.00 0.00 2.44
398 422 0.524862 GCTTGTTGGGTGCATGAGAG 59.475 55.000 0.00 0.00 0.00 3.20
400 424 0.242825 CTGCTTGTTGGGTGCATGAG 59.757 55.000 0.00 0.00 36.07 2.90
565 594 0.413037 TGAATGCCCCACCTGGATTT 59.587 50.000 0.00 0.00 37.39 2.17
848 878 4.988540 GGCTGGTGAAAATTGGAAAGTAAC 59.011 41.667 0.00 0.00 0.00 2.50
856 886 0.958091 TCGTGGCTGGTGAAAATTGG 59.042 50.000 0.00 0.00 0.00 3.16
883 913 3.491447 GCAGCTTGAGTTGACCACAAATT 60.491 43.478 0.00 0.00 37.77 1.82
893 923 2.696506 TCTGAGATGCAGCTTGAGTTG 58.303 47.619 5.67 0.00 44.52 3.16
916 948 3.366052 TCCAGAATTAGGTTGGGAAGC 57.634 47.619 0.00 0.00 32.76 3.86
980 1012 5.231991 AGCATGTGTGTTTAAAAGAAAAGCG 59.768 36.000 0.00 0.00 0.00 4.68
1064 1111 3.114606 TGTGGGAAAGATATGAGAGGCA 58.885 45.455 0.00 0.00 0.00 4.75
1209 1273 5.012561 AGGGAATAGATATCAACACTGAGCC 59.987 44.000 5.32 0.00 34.23 4.70
1325 1390 1.200948 GGCTTGTGTGCTTTCCTCATC 59.799 52.381 0.00 0.00 0.00 2.92
1377 1626 8.155510 AGCATCTAAGCAATCTATTGATCAGAA 58.844 33.333 6.87 0.00 40.14 3.02
1446 1695 0.247736 GGCGACAGGAAGATCTGTGT 59.752 55.000 0.00 0.06 46.76 3.72
1535 1810 0.602905 GTGGTGGAAGAGGTCAACGG 60.603 60.000 0.00 0.00 29.71 4.44
1627 1902 0.107993 TTTGGATCCTCGCTGCTCAG 60.108 55.000 14.23 0.00 0.00 3.35
1628 1903 0.324614 TTTTGGATCCTCGCTGCTCA 59.675 50.000 14.23 0.00 0.00 4.26
1632 1907 0.453390 GCCTTTTTGGATCCTCGCTG 59.547 55.000 14.23 0.62 38.35 5.18
1633 1908 1.026718 CGCCTTTTTGGATCCTCGCT 61.027 55.000 14.23 0.00 38.35 4.93
1637 1912 0.967380 CAGCCGCCTTTTTGGATCCT 60.967 55.000 14.23 0.00 38.35 3.24
1640 1915 1.535204 CCACAGCCGCCTTTTTGGAT 61.535 55.000 0.00 0.00 38.35 3.41
1642 1917 2.339712 CCACAGCCGCCTTTTTGG 59.660 61.111 0.00 0.00 39.35 3.28
1643 1918 1.535204 ATCCCACAGCCGCCTTTTTG 61.535 55.000 0.00 0.00 0.00 2.44
1644 1919 0.831711 AATCCCACAGCCGCCTTTTT 60.832 50.000 0.00 0.00 0.00 1.94
1646 1921 1.228862 AAATCCCACAGCCGCCTTT 60.229 52.632 0.00 0.00 0.00 3.11
1647 1922 1.978617 CAAATCCCACAGCCGCCTT 60.979 57.895 0.00 0.00 0.00 4.35
1649 1924 4.133796 GCAAATCCCACAGCCGCC 62.134 66.667 0.00 0.00 0.00 6.13
1650 1925 1.312371 TAAGCAAATCCCACAGCCGC 61.312 55.000 0.00 0.00 0.00 6.53
1652 1927 0.817654 GGTAAGCAAATCCCACAGCC 59.182 55.000 0.00 0.00 0.00 4.85
1653 1928 1.745653 GAGGTAAGCAAATCCCACAGC 59.254 52.381 0.00 0.00 0.00 4.40
1654 1929 3.071874 TGAGGTAAGCAAATCCCACAG 57.928 47.619 0.00 0.00 0.00 3.66
1655 1930 3.737559 ATGAGGTAAGCAAATCCCACA 57.262 42.857 0.00 0.00 0.00 4.17
1658 1933 4.524328 CCCATTATGAGGTAAGCAAATCCC 59.476 45.833 0.00 0.00 0.00 3.85
1659 1934 5.140454 ACCCATTATGAGGTAAGCAAATCC 58.860 41.667 4.02 0.00 33.52 3.01
1660 1935 6.507023 CAACCCATTATGAGGTAAGCAAATC 58.493 40.000 5.94 0.00 34.45 2.17
1661 1936 5.163416 GCAACCCATTATGAGGTAAGCAAAT 60.163 40.000 16.90 0.00 37.30 2.32
1664 3461 3.287222 GCAACCCATTATGAGGTAAGCA 58.713 45.455 16.90 0.00 37.30 3.91
1666 3463 5.132502 TGATGCAACCCATTATGAGGTAAG 58.867 41.667 5.94 4.27 34.45 2.34
1673 3470 3.700539 TGTTCCTGATGCAACCCATTATG 59.299 43.478 0.00 0.00 33.29 1.90
1674 3471 3.701040 GTGTTCCTGATGCAACCCATTAT 59.299 43.478 0.00 0.00 33.29 1.28
1679 3476 0.539438 TGGTGTTCCTGATGCAACCC 60.539 55.000 0.00 0.00 34.23 4.11
1688 3485 0.112218 TTGTGGGGATGGTGTTCCTG 59.888 55.000 0.00 0.00 35.97 3.86
1695 3492 1.075482 CAGTGCTTGTGGGGATGGT 59.925 57.895 0.00 0.00 0.00 3.55
1710 3514 2.779755 TGGATGAAATACACGGCAGT 57.220 45.000 0.00 0.00 26.77 4.40
1743 3547 1.159713 TGGATCGCCATTGACGCATC 61.160 55.000 0.00 0.00 39.92 3.91
1744 3548 0.747644 TTGGATCGCCATTGACGCAT 60.748 50.000 0.00 0.00 45.46 4.73
1764 3568 0.111253 CCACCTCTGGCCACTCTTTT 59.889 55.000 0.00 0.00 0.00 2.27
1834 3639 4.329545 GTGGGACTTCCGCTGGCA 62.330 66.667 0.00 0.00 42.62 4.92
1856 3661 1.676678 TACTGCTGATCCGTGGCTCC 61.677 60.000 0.00 0.00 0.00 4.70
1960 3766 0.470456 AGGGGAATACGGTATGCGGA 60.470 55.000 0.58 0.00 0.00 5.54
2044 3850 0.800683 TTATCACAACGGCTCGCGAG 60.801 55.000 31.37 31.37 0.00 5.03
2046 3852 0.025001 CTTTATCACAACGGCTCGCG 59.975 55.000 0.00 0.00 0.00 5.87
2133 3939 7.664758 ACCGGTTAGTTTCATATGTAGGATAC 58.335 38.462 0.00 0.00 43.42 2.24
2152 3958 2.433436 GACCTAAGATGCAAACCGGTT 58.567 47.619 15.86 15.86 0.00 4.44
2156 3962 6.431198 TTTATTCGACCTAAGATGCAAACC 57.569 37.500 0.00 0.00 0.00 3.27
2173 3979 7.309920 TCCTCATTTTTACGTTGCCTTTATTC 58.690 34.615 0.00 0.00 0.00 1.75
2178 3984 4.142038 ACTCCTCATTTTTACGTTGCCTT 58.858 39.130 0.00 0.00 0.00 4.35
2180 3986 3.500680 TGACTCCTCATTTTTACGTTGCC 59.499 43.478 0.00 0.00 0.00 4.52
2181 3987 4.742438 TGACTCCTCATTTTTACGTTGC 57.258 40.909 0.00 0.00 0.00 4.17
2182 3988 7.358352 GCAATTTGACTCCTCATTTTTACGTTG 60.358 37.037 0.00 0.00 0.00 4.10
2183 3989 6.640907 GCAATTTGACTCCTCATTTTTACGTT 59.359 34.615 0.00 0.00 0.00 3.99
2220 4028 1.909302 ACATAATAGATCCTGGCCGGG 59.091 52.381 26.30 26.30 0.00 5.73
2225 4033 4.150627 CGTCGCAAACATAATAGATCCTGG 59.849 45.833 0.00 0.00 0.00 4.45
2296 4172 2.846206 TGAGGGCCAACTCTACATCATT 59.154 45.455 6.18 0.00 38.32 2.57
2350 4226 3.284617 TGGCTCCACAATCAATGATCTG 58.715 45.455 0.00 0.40 0.00 2.90
2358 4234 0.321564 CGTTCCTGGCTCCACAATCA 60.322 55.000 0.00 0.00 0.00 2.57
2362 4238 3.241530 AGCGTTCCTGGCTCCACA 61.242 61.111 0.00 0.00 35.37 4.17
2368 4244 2.356818 ATCTAGCGAGCGTTCCTGGC 62.357 60.000 0.00 0.00 44.68 4.85
2370 4246 0.382158 TGATCTAGCGAGCGTTCCTG 59.618 55.000 0.00 0.00 0.00 3.86
2376 4252 1.322865 GATCGTTGATCTAGCGAGCG 58.677 55.000 11.13 0.00 45.16 5.03
2400 4287 4.407945 TCAGCTCATGATCTGATTCCAAGA 59.592 41.667 22.23 1.32 34.69 3.02
2411 4298 7.704271 TCAAATCTGAAATTCAGCTCATGATC 58.296 34.615 17.58 0.00 43.95 2.92
2451 4338 1.567357 GATGAGATCTCCTAGGCCCC 58.433 60.000 20.03 0.00 0.00 5.80
2473 4360 6.540551 GGAGAGATTCTTTATTTGACCCTCAC 59.459 42.308 0.00 0.00 0.00 3.51
2474 4361 6.445139 AGGAGAGATTCTTTATTTGACCCTCA 59.555 38.462 0.00 0.00 0.00 3.86
2507 4394 5.221048 CCGCAAAACCCTATCTATTCCTTTG 60.221 44.000 0.00 0.00 0.00 2.77
2517 4404 1.093496 CCCGTCCGCAAAACCCTATC 61.093 60.000 0.00 0.00 0.00 2.08
2578 4467 2.813908 GGATGGGTGACGCGTGTC 60.814 66.667 20.70 22.00 45.71 3.67
2579 4468 2.954684 ATGGATGGGTGACGCGTGT 61.955 57.895 20.70 0.00 0.00 4.49
2580 4469 2.125147 ATGGATGGGTGACGCGTG 60.125 61.111 20.70 0.00 0.00 5.34
2581 4470 2.125147 CATGGATGGGTGACGCGT 60.125 61.111 13.85 13.85 0.00 6.01
2582 4471 3.576356 GCATGGATGGGTGACGCG 61.576 66.667 3.53 3.53 0.00 6.01
2583 4472 3.211963 GGCATGGATGGGTGACGC 61.212 66.667 0.00 0.00 0.00 5.19
2584 4473 1.524621 GAGGCATGGATGGGTGACG 60.525 63.158 0.00 0.00 0.00 4.35
2585 4474 1.152881 GGAGGCATGGATGGGTGAC 60.153 63.158 0.00 0.00 0.00 3.67
2592 4481 2.087461 GGAAGGGGGAGGCATGGAT 61.087 63.158 0.00 0.00 0.00 3.41
2596 4485 3.411517 CACGGAAGGGGGAGGCAT 61.412 66.667 0.00 0.00 0.00 4.40
2604 4493 0.251430 TAAAAAGGGCCACGGAAGGG 60.251 55.000 6.18 0.00 0.00 3.95
2610 4499 2.874751 CGGCTAAAAAGGGCCACG 59.125 61.111 6.18 0.00 0.00 4.94
2611 4500 2.212900 CTGCGGCTAAAAAGGGCCAC 62.213 60.000 6.18 0.00 0.00 5.01
2613 4502 1.248101 TTCTGCGGCTAAAAAGGGCC 61.248 55.000 0.00 0.00 0.00 5.80
2614 4503 0.601057 TTTCTGCGGCTAAAAAGGGC 59.399 50.000 0.00 0.00 0.00 5.19
2615 4504 3.378911 TTTTTCTGCGGCTAAAAAGGG 57.621 42.857 16.92 0.00 32.39 3.95
2641 4595 2.626743 ACTAGTCGATGGGTATTTCCGG 59.373 50.000 0.00 0.00 37.00 5.14
2642 4596 4.276678 TGTACTAGTCGATGGGTATTTCCG 59.723 45.833 0.00 0.00 37.00 4.30
2644 4598 5.684626 CGTTGTACTAGTCGATGGGTATTTC 59.315 44.000 0.00 0.00 0.00 2.17
2645 4599 5.585390 CGTTGTACTAGTCGATGGGTATTT 58.415 41.667 0.00 0.00 0.00 1.40
2648 4602 2.355756 GCGTTGTACTAGTCGATGGGTA 59.644 50.000 0.00 0.00 0.00 3.69
2650 4604 1.404391 AGCGTTGTACTAGTCGATGGG 59.596 52.381 0.00 0.00 0.00 4.00
2651 4605 2.451132 CAGCGTTGTACTAGTCGATGG 58.549 52.381 10.98 0.00 36.34 3.51
2652 4606 1.846782 GCAGCGTTGTACTAGTCGATG 59.153 52.381 13.67 13.67 41.50 3.84
2655 4609 0.801067 GGGCAGCGTTGTACTAGTCG 60.801 60.000 0.00 0.00 0.00 4.18
2659 4613 0.616371 ATTGGGGCAGCGTTGTACTA 59.384 50.000 0.00 0.00 0.00 1.82
2661 4615 0.170339 GAATTGGGGCAGCGTTGTAC 59.830 55.000 0.00 0.00 0.00 2.90
2662 4616 1.302383 CGAATTGGGGCAGCGTTGTA 61.302 55.000 0.00 0.00 0.00 2.41
2663 4617 2.625823 CGAATTGGGGCAGCGTTGT 61.626 57.895 0.00 0.00 0.00 3.32
2664 4618 1.656818 ATCGAATTGGGGCAGCGTTG 61.657 55.000 0.00 0.00 0.00 4.10
2665 4619 1.376609 GATCGAATTGGGGCAGCGTT 61.377 55.000 0.00 0.00 0.00 4.84
2667 4621 1.779025 CTGATCGAATTGGGGCAGCG 61.779 60.000 0.00 0.00 0.00 5.18
2668 4622 2.028130 CTGATCGAATTGGGGCAGC 58.972 57.895 0.00 0.00 0.00 5.25
2669 4623 0.465097 AGCTGATCGAATTGGGGCAG 60.465 55.000 0.00 6.26 0.00 4.85
2671 4625 1.066152 GAAAGCTGATCGAATTGGGGC 59.934 52.381 0.00 0.00 0.00 5.80
2672 4626 2.615912 GAGAAAGCTGATCGAATTGGGG 59.384 50.000 0.00 0.00 0.00 4.96
2673 4627 3.539604 AGAGAAAGCTGATCGAATTGGG 58.460 45.455 0.00 0.00 0.00 4.12
2674 4628 6.481313 TGAATAGAGAAAGCTGATCGAATTGG 59.519 38.462 0.00 0.00 0.00 3.16
2675 4629 7.307278 CCTGAATAGAGAAAGCTGATCGAATTG 60.307 40.741 0.00 0.00 0.00 2.32
2683 4637 3.110705 AGGCCTGAATAGAGAAAGCTGA 58.889 45.455 3.11 0.00 0.00 4.26
2684 4638 3.557228 AGGCCTGAATAGAGAAAGCTG 57.443 47.619 3.11 0.00 0.00 4.24
2688 4642 5.590259 GCATGTTAAGGCCTGAATAGAGAAA 59.410 40.000 5.69 0.00 0.00 2.52
2694 4648 6.154192 TGAAATTGCATGTTAAGGCCTGAATA 59.846 34.615 5.69 2.98 30.04 1.75
2721 4675 1.108727 CAGAGTTGCTTTGTGCCCCA 61.109 55.000 0.00 0.00 42.00 4.96
2750 4704 0.318441 TGGCTTCGTCCAGAGAACTG 59.682 55.000 0.00 0.00 43.12 3.16
2759 4713 0.322546 ATTCCTTGGTGGCTTCGTCC 60.323 55.000 0.00 0.00 35.26 4.79
2769 4723 5.499004 TCAGCTTGTAAGTATTCCTTGGT 57.501 39.130 0.00 0.00 34.46 3.67
2790 4744 1.668419 AATAGGCAGCATCCACGTTC 58.332 50.000 0.00 0.00 0.00 3.95
2801 4755 5.413499 CCAAACCATTCTCAAAATAGGCAG 58.587 41.667 0.00 0.00 0.00 4.85
2804 4758 5.127682 CCTCCCAAACCATTCTCAAAATAGG 59.872 44.000 0.00 0.00 0.00 2.57
2810 4764 2.875296 CACCTCCCAAACCATTCTCAA 58.125 47.619 0.00 0.00 0.00 3.02
2817 4771 2.391130 ACCTGCACCTCCCAAACCA 61.391 57.895 0.00 0.00 0.00 3.67
2822 4776 2.382770 ACAACACCTGCACCTCCCA 61.383 57.895 0.00 0.00 0.00 4.37
2823 4777 1.898574 CACAACACCTGCACCTCCC 60.899 63.158 0.00 0.00 0.00 4.30
2824 4778 1.898574 CCACAACACCTGCACCTCC 60.899 63.158 0.00 0.00 0.00 4.30
2840 4794 2.100197 CTCCTCTGTCATTACGGACCA 58.900 52.381 0.00 0.00 36.03 4.02
2844 4798 1.067821 GCCTCTCCTCTGTCATTACGG 59.932 57.143 0.00 0.00 0.00 4.02
2880 4834 3.751518 GAGAAGGTTCTGTAAAGGCCAA 58.248 45.455 5.01 0.00 37.73 4.52
2883 4837 3.314541 TCGAGAAGGTTCTGTAAAGGC 57.685 47.619 0.00 0.00 37.73 4.35
2964 4927 6.135454 TGATTCAATAATAACTGGGGCACAT 58.865 36.000 0.00 0.00 0.00 3.21
2981 4944 7.026631 ACAAGTTTCAACGAATCTGATTCAA 57.973 32.000 25.32 12.38 39.22 2.69
3077 5040 1.338337 AGATCGAGCCAATCCTGTACG 59.662 52.381 0.00 0.00 0.00 3.67
3083 5046 1.043816 TGAGGAGATCGAGCCAATCC 58.956 55.000 0.00 0.00 0.00 3.01
3093 5056 2.758736 AGCAGTGTTGTGAGGAGATC 57.241 50.000 0.00 0.00 0.00 2.75
3100 5063 1.419381 TCCCTGTAGCAGTGTTGTGA 58.581 50.000 0.00 0.00 0.00 3.58
3101 5064 2.146342 CTTCCCTGTAGCAGTGTTGTG 58.854 52.381 0.00 0.00 0.00 3.33
3106 5069 2.234908 AGTTAGCTTCCCTGTAGCAGTG 59.765 50.000 0.00 0.00 41.11 3.66
3109 5072 2.426024 CGTAGTTAGCTTCCCTGTAGCA 59.574 50.000 0.00 0.00 41.11 3.49
3111 5074 3.181489 CCACGTAGTTAGCTTCCCTGTAG 60.181 52.174 0.00 0.00 41.61 2.74
3114 5077 1.739371 GCCACGTAGTTAGCTTCCCTG 60.739 57.143 0.00 0.00 41.61 4.45
3116 5079 0.804933 CGCCACGTAGTTAGCTTCCC 60.805 60.000 0.00 0.00 41.61 3.97
3211 5175 1.651987 ACATCATTCGTTACAGCCGG 58.348 50.000 0.00 0.00 0.00 6.13
3214 5178 7.891183 ATAAGGATACATCATTCGTTACAGC 57.109 36.000 0.00 0.00 41.41 4.40
3280 5244 4.331968 TCTGATTTATCTGCCCGTGTTTT 58.668 39.130 0.00 0.00 0.00 2.43
3281 5245 3.950397 TCTGATTTATCTGCCCGTGTTT 58.050 40.909 0.00 0.00 0.00 2.83
3285 5494 5.013079 TGGATATTCTGATTTATCTGCCCGT 59.987 40.000 7.60 0.00 0.00 5.28
3302 5511 8.846943 TGTCGTTGCAAGAATATATGGATATT 57.153 30.769 0.00 0.00 40.33 1.28
3303 5512 8.846943 TTGTCGTTGCAAGAATATATGGATAT 57.153 30.769 0.00 0.00 0.00 1.63
3304 5513 8.846943 ATTGTCGTTGCAAGAATATATGGATA 57.153 30.769 0.00 0.00 0.00 2.59
3305 5514 7.750229 ATTGTCGTTGCAAGAATATATGGAT 57.250 32.000 0.00 0.00 0.00 3.41
3307 5516 9.729023 TTAAATTGTCGTTGCAAGAATATATGG 57.271 29.630 0.00 0.00 0.00 2.74
3323 5573 8.725046 GCGAATTTGAAGTAGATTAAATTGTCG 58.275 33.333 0.00 0.00 34.07 4.35
3359 5611 7.315890 CCCCTCATGTTTGAAGTAGATTTTTC 58.684 38.462 0.00 0.00 0.00 2.29
3386 5638 3.512516 GGAGTTGCATCGGCCTGC 61.513 66.667 9.99 9.99 42.62 4.85
3387 5639 3.197790 CGGAGTTGCATCGGCCTG 61.198 66.667 0.00 0.00 40.13 4.85
3388 5640 3.706373 ACGGAGTTGCATCGGCCT 61.706 61.111 0.00 0.00 37.78 5.19
3404 7672 2.677979 GCTTTGCGGTTCGGAGGAC 61.678 63.158 0.00 0.00 0.00 3.85
3493 8263 0.180406 ACAGGAGTGGCACGTCTTTT 59.820 50.000 12.71 0.00 0.00 2.27
3499 8269 0.668706 CTCAAGACAGGAGTGGCACG 60.669 60.000 12.71 0.00 31.79 5.34
3523 8293 5.480642 ACATCTCCTCATGTGGCTATAAG 57.519 43.478 9.02 1.36 35.57 1.73
3544 8314 6.027749 CCTGCTCGTTCCACATTTTTATTAC 58.972 40.000 0.00 0.00 0.00 1.89
3562 8332 2.176273 CCTGCGTACATGCCTGCTC 61.176 63.158 0.00 0.00 0.00 4.26
3575 8345 0.040958 GACAAGTGCAAGAACCTGCG 60.041 55.000 0.00 0.00 45.74 5.18
3577 8347 2.542411 GCAAGACAAGTGCAAGAACCTG 60.542 50.000 0.00 0.00 41.80 4.00
3583 8353 1.202325 TGCAAGCAAGACAAGTGCAAG 60.202 47.619 0.00 0.00 44.74 4.01
3589 8359 4.365723 ACAGAAATTGCAAGCAAGACAAG 58.634 39.130 13.35 5.85 39.47 3.16
3617 9853 1.029947 GCGGATAAGTTGTGGGGGTG 61.030 60.000 0.00 0.00 0.00 4.61
3619 9855 0.463833 GAGCGGATAAGTTGTGGGGG 60.464 60.000 0.00 0.00 0.00 5.40
3670 10003 3.147629 ACGGAGGGAGTAGATCATAACG 58.852 50.000 0.00 0.00 0.00 3.18
3682 10015 5.186198 ACAAATAATTCAGAACGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
3683 10016 5.045869 AGACAAATAATTCAGAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
3684 10017 5.186198 AGACAAATAATTCAGAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
3685 10018 6.403636 CCAAGACAAATAATTCAGAACGGAGG 60.404 42.308 0.00 0.00 0.00 4.30
3686 10019 6.371548 TCCAAGACAAATAATTCAGAACGGAG 59.628 38.462 0.00 0.00 0.00 4.63
3687 10020 6.234920 TCCAAGACAAATAATTCAGAACGGA 58.765 36.000 0.00 0.00 0.00 4.69
3688 10021 6.494893 TCCAAGACAAATAATTCAGAACGG 57.505 37.500 0.00 0.00 0.00 4.44
3689 10022 8.853345 CAAATCCAAGACAAATAATTCAGAACG 58.147 33.333 0.00 0.00 0.00 3.95
3690 10023 9.696917 ACAAATCCAAGACAAATAATTCAGAAC 57.303 29.630 0.00 0.00 0.00 3.01
3691 10024 9.912634 GACAAATCCAAGACAAATAATTCAGAA 57.087 29.630 0.00 0.00 0.00 3.02
3692 10025 9.300681 AGACAAATCCAAGACAAATAATTCAGA 57.699 29.630 0.00 0.00 0.00 3.27
3700 10033 9.388506 CTGTATCTAGACAAATCCAAGACAAAT 57.611 33.333 0.00 0.00 0.00 2.32
3701 10034 8.593679 TCTGTATCTAGACAAATCCAAGACAAA 58.406 33.333 0.00 0.00 0.00 2.83
3702 10035 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
3703 10036 7.147828 CCTCTGTATCTAGACAAATCCAAGACA 60.148 40.741 0.00 0.00 0.00 3.41
3704 10037 7.147811 ACCTCTGTATCTAGACAAATCCAAGAC 60.148 40.741 0.00 0.00 0.00 3.01
3705 10038 6.897966 ACCTCTGTATCTAGACAAATCCAAGA 59.102 38.462 0.00 0.00 0.00 3.02
3706 10039 7.118496 ACCTCTGTATCTAGACAAATCCAAG 57.882 40.000 0.00 0.00 0.00 3.61
3707 10040 8.783660 ATACCTCTGTATCTAGACAAATCCAA 57.216 34.615 0.00 0.00 31.99 3.53
3708 10041 8.410673 GATACCTCTGTATCTAGACAAATCCA 57.589 38.462 0.00 0.00 46.54 3.41
3721 10054 9.368416 TCATTTTAGTGCTAGATACCTCTGTAT 57.632 33.333 0.00 0.00 40.41 2.29
3722 10055 8.762481 TCATTTTAGTGCTAGATACCTCTGTA 57.238 34.615 0.00 0.00 32.66 2.74
3723 10056 7.343316 ACTCATTTTAGTGCTAGATACCTCTGT 59.657 37.037 0.00 0.00 32.66 3.41
3724 10057 7.721402 ACTCATTTTAGTGCTAGATACCTCTG 58.279 38.462 0.00 0.00 32.66 3.35
3725 10058 7.782644 AGACTCATTTTAGTGCTAGATACCTCT 59.217 37.037 0.00 0.00 35.39 3.69
3726 10059 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
3727 10060 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
3728 10061 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
3732 10065 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
3735 10068 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
3736 10069 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
3737 10070 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
3738 10071 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
3754 10087 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
3755 10088 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
3756 10089 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
3757 10090 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
3758 10091 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
3759 10092 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
3760 10093 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
3761 10094 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
3762 10095 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
3764 10097 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
3765 10098 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
3766 10099 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
3767 10100 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
3768 10101 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
3769 10102 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
3770 10103 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
3771 10104 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
3772 10105 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
3773 10106 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
3774 10107 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
3775 10108 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
3776 10109 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
3777 10110 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
3778 10111 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
3779 10112 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
3780 10113 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3781 10114 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3782 10115 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3783 10116 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3784 10117 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3785 10118 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3786 10119 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3787 10120 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
3788 10121 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
3789 10122 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
3790 10123 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
3791 10124 1.135170 GTTTCTACTCCCTCCGTTCCG 60.135 57.143 0.00 0.00 0.00 4.30
3792 10125 1.135170 CGTTTCTACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
3793 10126 1.815003 TCGTTTCTACTCCCTCCGTTC 59.185 52.381 0.00 0.00 0.00 3.95
3794 10127 1.543358 GTCGTTTCTACTCCCTCCGTT 59.457 52.381 0.00 0.00 0.00 4.44
3795 10128 1.172175 GTCGTTTCTACTCCCTCCGT 58.828 55.000 0.00 0.00 0.00 4.69
3796 10129 1.461559 AGTCGTTTCTACTCCCTCCG 58.538 55.000 0.00 0.00 0.00 4.63
3797 10130 3.377798 CAGTAGTCGTTTCTACTCCCTCC 59.622 52.174 12.11 0.00 45.77 4.30
3798 10131 4.009002 ACAGTAGTCGTTTCTACTCCCTC 58.991 47.826 12.11 0.00 45.77 4.30
3799 10132 4.031636 ACAGTAGTCGTTTCTACTCCCT 57.968 45.455 12.11 0.00 45.77 4.20
3800 10133 4.458642 AGAACAGTAGTCGTTTCTACTCCC 59.541 45.833 12.11 7.03 45.77 4.30
3801 10134 5.625921 AGAACAGTAGTCGTTTCTACTCC 57.374 43.478 12.11 7.26 45.77 3.85
3802 10135 7.536964 GGTTTAGAACAGTAGTCGTTTCTACTC 59.463 40.741 12.11 5.43 45.77 2.59
3804 10137 7.366513 AGGTTTAGAACAGTAGTCGTTTCTAC 58.633 38.462 6.94 6.94 40.14 2.59
3805 10138 7.516198 AGGTTTAGAACAGTAGTCGTTTCTA 57.484 36.000 0.00 0.00 0.00 2.10
3806 10139 6.402456 AGGTTTAGAACAGTAGTCGTTTCT 57.598 37.500 0.00 0.00 0.00 2.52
3823 10156 8.076910 TCCACGGATACAGTATTTAAGGTTTA 57.923 34.615 0.00 0.00 0.00 2.01
3843 10176 0.521867 CGTGCATGCTGAAATCCACG 60.522 55.000 20.33 13.60 39.75 4.94
3848 10181 1.200716 CCTTGACGTGCATGCTGAAAT 59.799 47.619 20.33 0.00 0.00 2.17
3881 10235 2.550606 TCAACGATACACCCAAAACTGC 59.449 45.455 0.00 0.00 0.00 4.40
3889 10243 3.058501 CCACTTTGTTCAACGATACACCC 60.059 47.826 0.00 0.00 0.00 4.61
3944 10298 6.147821 ACAACACAAGCTGCAGTAAGTATAAG 59.852 38.462 16.64 1.89 0.00 1.73
4024 10378 6.292150 AGAGACTTCCTAGTGTTTTTCTTGG 58.708 40.000 0.00 0.00 33.84 3.61
4105 10459 8.548025 TGATTGAGGAGACAAATTATGGAGTTA 58.452 33.333 0.00 0.00 33.44 2.24
4346 10700 3.309296 CAACCCTAGGAGCTCAGGATAA 58.691 50.000 19.32 0.00 33.42 1.75
4374 10728 1.278238 GAACATCTGTTACGGCCTCG 58.722 55.000 0.00 0.00 38.56 4.63
4474 10829 4.979197 GTGTTAAGCTCACGATCTGGATAG 59.021 45.833 0.00 0.00 0.00 2.08
4485 10840 3.120511 GCTAGCACAAGTGTTAAGCTCAC 60.121 47.826 10.63 0.00 36.80 3.51
4494 10849 5.551233 TCTGAATTAAGCTAGCACAAGTGT 58.449 37.500 18.83 0.09 0.00 3.55
4553 10908 4.380841 TCAGTACCACCACGTTCATATC 57.619 45.455 0.00 0.00 0.00 1.63
4623 10978 4.882671 TTCTCACAAGAACTTTCACAGC 57.117 40.909 0.00 0.00 36.59 4.40
4835 11194 6.514048 GCACTTGCATGTAAATCTAGATTCCC 60.514 42.308 18.19 11.89 41.59 3.97
4905 11264 4.734398 TTGGTCAGAGTGCACAAATTTT 57.266 36.364 21.04 0.00 0.00 1.82
4991 11350 6.403964 CCATATGTGATATGCCCATTTTCTCG 60.404 42.308 1.24 0.00 40.96 4.04
5194 11553 6.417191 TGTCTGCGGTTTAAATAAGATGAC 57.583 37.500 0.00 0.00 0.00 3.06
5210 11569 1.284982 CCGTCTTGTTCCTGTCTGCG 61.285 60.000 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.